Pregenerated sensors for CTXN1 (Homo sapiens)
Ensembl gene IDs: ENSG00000178531Ensembl transcript IDs: ENST00000318978.6
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGGCCTTCGGGCTCCGTCTCCGGGACAGGCGGTGCAGGGCAAATTaGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGCCCCGC | + |
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Preference number: 1 (lower is better) Translates to: QAFGLRLRDRRCRAN*YAASAPWARESLPR Trigger: GCGGGGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCCGGAGACGGAGCCCGAAGGCCTG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR CCA 90 bp | CTGTCCCGCCACGGCAGGCGCCACGCATCCTCGACACAGCCGCCATaGCAGGCCTTCGGGCTCCGTCTCCGGGACAGGCGGTGCAGGGCA | + |
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Preference number: 1 (lower is better) Translates to: LSRHGRRHASSTQPP*QAFGLRLRDRRCRA Trigger: TGCCCTGCACCGCCTGTCCCGGAGACGGAGCCCGAAGGCCTGCCATGGCGGCTGTGTCGAGGATGCGTGGCGCCTGCCGTGGCGGGACAG 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR CCA 90 bp | CGGGACAGGCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTaGGCCCGGGAGAGCCTGCCCCGCAGGGACCAGAGCCCAAGGACG | + |
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Preference number: 1 (lower is better) Translates to: RDRRCRANWYAASAP*ARESLPRRDQSPRT Trigger: CGTCCTTGGGCTCTGGTCCCTGCGGGGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR GCA 90 bp | GGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTaGCCCGCAGGGACCAGAGCCCAAGGACGGGCTCAACACTCAGTC | + |
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Preference number: 1 (lower is better) Translates to: GQIGMQRPPRGPGRA*PAGTRAQGRAQHSV Trigger: GACTGAGTGTTGAGCCCGTCCTTGGGCTCTGGTCCCTGCGGGGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR CAA 90 bp | GCAGGCCTTCGGGCTCCGTCTCCGGGACAGGCGGTGCAGGGCAAATaGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGCCCCG | + |
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Preference number: 2 (lower is better) Translates to: AGLRAPSPGQAVQGK*VCSVRPVGPGEPAP Trigger: CGGGGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCCGGAGACGGAGCCCGAAGGCCTGC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR-3UTR TCA 90 bp | AGGCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCTCCGGGGCGGGATCCTaGGCGCAGTCCTGGCCCCGC | + |
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Preference number: 2 (lower is better) Translates to: RRCRANWYAASAPWARESSGAGS*AQSWPR Trigger: GCGGGGCCAGGACTGCGCTCAGGATCCCGCCCCGGA...GCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR-3UTR CCA 90 bp | GCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGCCCCGAGCCACTTACACGCTaGGGAGGGGGCGGTGCGGGG | + |
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Preference number: 2 (lower is better) Translates to: AGQIGMQRPPRGPGRACPEPLTR*GGGGAG Trigger: CCCCGCACCGCCCCCTCCCCAGCGTGTAAGTGGCTC...GGGGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR-3UTR CCA 90 bp | CCGTCTCCGGGACAGGCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGATAAAGGCACGAGGTaGGGCTCCGGCCAGGCCAGG | + |
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Preference number: 2 (lower is better) Translates to: PSPGQAVQGKLVCSVRPVDKGTR*GSGQAR Trigger: CCTGGCCTGGCCGGAGCCCCACCTCGTGCCTTTATC...CACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCCGGAGACGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR-3UTR CCA 90 bp | TCCCCACTTCCAGGGACGCACAATAGCAGAGCCACTTACACGCTGGGGAGGGGGATTCAGAGTCGGGGGTaGGGGCCAGCCGGGCGGGTG | + |
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Preference number: 2 (lower is better) Translates to: SPLPGTHNSRATYTLGRGIQSRG*GPAGRV Trigger: CACCCGCCCGGCTGGCCCCCACCCCCGACTCTGAAT...CCCCCTCCCCAGCGTGTAAGTGGCTCTGCTATTGTGCGTCCCTGGAAGTGGGGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR-3UTR TCA 90 bp | TCCGTCTCCGGGACAGGCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTCAGTCAAGGTGGGGTTaGCGACGGCCAGACAACAGG | + |
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Preference number: 2 (lower is better) Translates to: SVSGTGGAGQIGMQRPPRQSRWG*RRPDNR Trigger: CCTGTTGTCTGGCCGTCGTCAACCCCACCTTGACTG...ACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCCGGAGACGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR-3UTR CCA 90 bp | TCCCCACTTCCAGGGACGCACAATAGCAGAGCCACTTACACGCTGGGGAGGGGGGGCCAGGAAGGGACATaGGAGGGGTCTCGAGGGGGA | + |
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Preference number: 2 (lower is better) Translates to: SPLPGTHNSRATYTLGRGGQEGT*EGSRGG Trigger: TCCCCCTCGAGACCCCTCCCATGTCCCTTCCTGGCC...CCCCCTCCCCAGCGTGTAAGTGGCTCTGCTATTGTGCGTCCCTGGAAGTGGGGA 64% GC, longest homopolymer 7 nt, total homopolymer stretches 24 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR-3UTR TCA 90 bp | GCTTTTATTATCATGTTCGGCTCAGAGGCAGGGAGGAGTGGAACGGCATGGGAGGGCCAGCCGGGCGGGTaGGATGCGCAGAGAGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: AFIIMFGSEAGRSGTAWEGQPGG*DAQRGR Trigger: CCTTCCTCTCTGCGCATCTCACCCGCCCGGCTGGCC...CTCCCATGCCGTTCCACTCCTCCCTGCCTCTGAGCCGAACATGATAATAAAAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR GCA 72 bp | GGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTaGCCCGCAGGGACCAGAGCCCAAGGACGGGCTCAA | + |
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Preference number: 3 (lower is better) Translates to: GMQRPPRGPGRA*PAGTRAQGRAQ Trigger: TTGAGCCCGTCCTTGGGCTCTGGTCCCTGCGGGGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR CCA 72 bp | CACGGCAGGCGCCACGCATCCTCGACACAGCCGCCATaGCAGGCCTTCGGGCTCCGTCTCCGGGACAGGCGG | + |
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Preference number: 3 (lower is better) Translates to: HGRRHASSTQPP*QAFGLRLRDRR Trigger: CCGCCTGTCCCGGAGACGGAGCCCGAAGGCCTGCCATGGCGGCTGTGTCGAGGATGCGTGGCGCCTGCCGTG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR GCA 72 bp | CCGTCTCCGGGACAGGCGGTGCAGGGCAAATTGGTATaGAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGCC | + |
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Preference number: 3 (lower is better) Translates to: PSPGQAVQGKLV*SVRPVGPGEPA Trigger: GGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCCGGAGACGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR CCA 72 bp | CGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTaGGCCCGGGAGAGCCTGCCCCGCAGGGACCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: RCRANWYAASAP*ARESLPRRDQS Trigger: GCTCTGGTCCCTGCGGGGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR-3UTR CAA 90 bp | GCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGCCCCTCAGTCAAGGTGGGGTaGACGACGGCCAGACAACAG | + |
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Preference number: 3 (lower is better) Translates to: AGQIGMQRPPRGPGRACPSVKVG*TTARQQ Trigger: CTGTTGTCTGGCCGTCGTCAACCCCACCTTGACTGA...GGGGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR-3UTR CAA 90 bp | GCTTTTATTATCATGTTCGGCTCAGAGGCAGGGAGGAGTGGAACGGCATGGGAGGCGGTGCAGGGCAAATaGGTATGCAGCGTCCGCCCC | + |
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Preference number: 3 (lower is better) Translates to: AFIIMFGSEAGRSGTAWEAVQGK*VCSVRP Trigger: GGGGCGGACGCTGCATACCAATTTGCCCTGCACCGC...CTCCCATGCCGTTCCACTCCTCCCTGCCTCTGAGCCGAACATGATAATAAAAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CCA 90 bp | GGGACAGGCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGTGGCAGGAGGGCGGATaGGGGGCAGCGGTGGGCACC | + |
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Preference number: 4 (lower is better) Translates to: GTGGAGQIGMQRPPRGPGWQEGG*GAAVGT Trigger: GGTGCCCACCGCTGCCCCCCATCCGCCCTCCTGCCA...CCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR GCA 90 bp | GCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGCGAACACCGTGCGCTaGTCCGCGTCCAGGCCCGCG | + |
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Preference number: 4 (lower is better) Translates to: AVQGKLVCSVRPVGPGEPANTVR*SASRPA Trigger: CGCGGGCCTGGACGCGGAGCAGCGCACGGTGTTCGC...AGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CCA 90 bp | CGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGATCGCCGCGCGCCCCTaGCTTCGACCCGGACGGGGA | + |
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Preference number: 4 (lower is better) Translates to: RCRANWYAASAPWARESLIAARP*LRPGRG Trigger: TCCCCGTCCGGGTCGAAGCCAGGGGCGCGCGGCGAT...CAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CCA 90 bp | AGGCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCGCGCTGACCTGTCCTaGGGCCCGGGTTGGGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: RRCRANWYAASAPWARESRADLS*GPGWGQ Trigger: CTGCCCCCAACCCGGGCCCCAGGACAGGTCAGCGCG...GCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR TCA 90 bp | TCCGTCTCCGGGACAGGCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTTCCGGGGCGGGATCCTaGGCGCAGTCCTGGCCCCGC | + |
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Preference number: 4 (lower is better) Translates to: SVSGTGGAGQIGMQRPPRSGAGS*AQSWPR Trigger: GCGGGGCCAGGACTGCGCTCAGGATCCCGCCCCGGA...ACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCCGGAGACGGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CCA 90 bp | GCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTATTCAGAGTCGGGGGTaGGGGCCAGCCGGGCGGGTG | + |
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Preference number: 4 (lower is better) Translates to: AVQGKLVCSVRPVGPGEPIQSRG*GPAGRV Trigger: CACCCGCCCGGCTGGCCCCCACCCCCGACTCTGAAT...AGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CCA 90 bp | CTCCGTCTCCGGGACAGGCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGGAGCCACTTACACGCTaGGGAGGGGGCGGTGCGGGG | + |
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Preference number: 4 (lower is better) Translates to: LRLRDRRCRANWYAASAPEPLTR*GGGGAG Trigger: CCCCGCACCGCCCCCTCCCCAGCGTGTAAGTGGCTC...CGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCCGGAGACGGAG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR TCA 90 bp | CGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGGGTTGGGGGCAGAAATaGGCCTGCCCACGCTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: RCRANWYAASAPWARESLGWGQK*ACPRCP Trigger: GGGACAGCGTGGGCAGGCTCATTTCTGCCCCCAACC...CAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR GCA 90 bp | GCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGCCCCAGGGGTCGAGCAGGATaGGCACGCAGCGCACCATCA | + |
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Preference number: 4 (lower is better) Translates to: AGQIGMQRPPRGPGRACPRGRAG*ARSAPS Trigger: TGATGGTGCGCTGCGTGCGCATCCTGCTCGACCCCT...GGGGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CCA 90 bp | TGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGCCCTCGAGCGCCTCCTTGTaGTCGGTCCAGGACGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: CRANWYAASAPWARESLPSSASL*SVQDEA Trigger: CGCCTCGTCCTGGACCGACCACAAGGAGGCGCTCGA...GGGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CCA 90 bp | GCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGGCCAGGAAGGGACATaGGAGGGGTCTCGAGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: AVQGKLVCSVRPVGPGEPGQEGT*EGSRGG Trigger: TCCCCCTCGAGACCCCTCCCATGTCCCTTCCTGGCC...AGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CCA 90 bp | GGGACAGGCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGCGGTGCAGGGCAAATTaGTATGCAGCGTCCGCCCCG | + |
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Preference number: 4 (lower is better) Translates to: GTGGAGQIGMQRPPRGPGRCRAN*YAASAP Trigger: CGGGGCGGACGCTGCATACCAATTTGCCCTGCACCG...CCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR TCA 90 bp | CGCAGGGACCAGAGCCCAAGGACGGGCTCAACACTCAGTCAAGGTGGGGTTGACGGCCAGCCGGGCGGGTaGGATGCGCAGAGAGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: RRDQSPRTGSTLSQGGVDGQPGG*DAQRGR Trigger: CCTTCCTCTCTGCGCATCTCACCCGCCCGGCTGGCC...GTCAACCCCACCTTGACTGAGTGTTGAGCCCGTCCTTGGGCTCTGGTCCCTGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR GCA 90 bp | GAGAGCCTGCCCCGCAGGGACCAGAGCCCAAGGACGGGCTCAACACTCAGTCAACGAAGGCGAACACCGTaGGCTGCTCCGCGTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: ESLPRRDQSPRTGSTLSQRRRTP*AAPRPG Trigger: GCCTGGACGCGGAGCAGCGCACGGTGTTCGCCTTCG...TTGACTGAGTGTTGAGCCCGTCCTTGGGCTCTGGTCCCTGCGGGGCAGGCTCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR GCA 90 bp | CTCCGTCTCCGGGACAGGCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGCAGGGCAAATTGGTATaGAGCGTCCGCCCCGTGGGC | + |
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Preference number: 4 (lower is better) Translates to: LRLRDRRCRANWYAASAPQGKLV*SVRPVG Trigger: GCCCACGGGGCGGACGCTGCATACCAATTTGCCCTG...CGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCCGGAGACGGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CCA 90 bp | TCCGTCTCCGGGACAGGCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTAGGAGTGGAACGGCATaGGAGGGCTGCGGGAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: SVSGTGGAGQIGMQRPPRRSGTA*EGCGRH Trigger: GTGCCTCCCGCAGCCCTCCCATGCCGTTCCACTCCT...ACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCCGGAGACGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR GCA 90 bp | GAGAGCCTGCCCCGCAGGGACCAGAGCCCAAGGACGGGCTCAACACTCAGTCAAAGGACGAGGCGGGCATaGGGCTGTAGGGGTCGAGCA | + |
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Preference number: 4 (lower is better) Translates to: ESLPRRDQSPRTGSTLSQRTRRA*GCRGRA Trigger: TGCTCGACCCCTACAGCCGCATGCCCGCCTCGTCCT...TTGACTGAGTGTTGAGCCCGTCCTTGGGCTCTGGTCCCTGCGGGGCAGGCTCTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR GCA 90 bp | TGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGCCCCTCCGGGACAGGCGGTaGAGGGCAAATTGGTATGCA | + |
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Preference number: 4 (lower is better) Translates to: CRANWYAASAPWARESLPLRDRR*RANWYA Trigger: TGCATACCAATTTGCCCTGCACCGCCTGTCCCGGAG...GGGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CCA 90 bp | CGCAGGGACCAGAGCCCAAGGACGGGCTCAACACTCAGTCAAGGTGGGGTTGACTCCACGTCGCGCTCATaGCTCACATCGCCGCGCGCC | + |
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Preference number: 4 (lower is better) Translates to: RRDQSPRTGSTLSQGGVDSTSRS*LTSPRA Trigger: GGCGCGCGGCGATGTGAGCCATGAGCGCGACGTGGA...GTCAACCCCACCTTGACTGAGTGTTGAGCCCGTCCTTGGGCTCTGGTCCCTGCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CCA 90 bp | CGCAGGGACCAGAGCCCAAGGACGGGCTCAACACTCAGTCAAGGTGGGGTTGACTCGACACAGCCGCCATaGCAGGCCTTCGGGCTCCGT | + |
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Preference number: 4 (lower is better) Translates to: RRDQSPRTGSTLSQGGVDSTQPP*QAFGLR Trigger: ACGGAGCCCGAAGGCCTGCCATGGCGGCTGTGTCGA...GTCAACCCCACCTTGACTGAGTGTTGAGCCCGTCCTTGGGCTCTGGTCCCTGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| 3UTR CAA 72 bp | GCCCAAGGACGGGCTCAACACTCAGTCAAGGTGGGGTaGACGACGGCCAGACAACAGGGGAGGGAGGAGGGA | + |
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Preference number: 4 (lower is better) Translates to: AQGRAQHSVKVG*TTARQQGREEG Trigger: TCCCTCCTCCCTCCCCTGTTGTCTGGCCGTCGTCAACCCCACCTTGACTGAGTGTTGAGCCCGTCCTTGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CCA 90 bp | AGCCCAAGGACGGGCTCAACACTCAGTCAAGGTGGGGTTGACGACGGCCAGACAGATAAAGGCACGAGGTaGGGCTCCGGCCAGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: SPRTGSTLSQGGVDDGQTDKGTR*GSGQAR Trigger: CCTGGCCTGGCCGGAGCCCCACCTCGTGCCTTTATC...TGTCTGGCCGTCGTCAACCCCACCTTGACTGAGTGTTGAGCCCGTCCTTGGGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR TCA 90 bp | CGCAGGGACCAGAGCCCAAGGACGGGCTCAACACTCAGTCAAGGTGGGGTTGACCAGTCAAGGTGGGGTTaGCGACGGCCAGACAACAGG | + |
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Preference number: 4 (lower is better) Translates to: RRDQSPRTGSTLSQGGVDQSRWG*RRPDNR Trigger: CCTGTTGTCTGGCCGTCGTCAACCCCACCTTGACTG...GTCAACCCCACCTTGACTGAGTGTTGAGCCCGTCCTTGGGCTCTGGTCCCTGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS GCA 90 bp | CGCGCTCGAGCGCCTCCTTGTGGTCGGTCCAGGACGAGGCGGGCATaGGGCTGTAGGGGTCGAGCAGGATGCGCACGCAGCGCACCATCA | + |
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Preference number: 5 (lower is better) Translates to: RARAPPCGRSRTRRA*GCRGRAGCARSAPS Trigger: TGATGGTGCGCTGCGTGCGCATCCTGCTCGACCCCTACAGCCGCATGCCCGCCTCGTCCTGGACCGACCACAAGGAGGCGCTCGAGCGCG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CAA 90 bp | CGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGGTCCTGGGGCCCGGGTaGGGGGCAGAAATGAGCCTG | + |
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Preference number: 5 (lower is better) Translates to: RCRANWYAASAPWARESLVLGPG*GAEMSL Trigger: CAGGCTCATTTCTGCCCCCAACCCGGGCCCCAGGAC...CAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CAA 90 bp | GGGACAGGCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGTCAGTCAAGGTGGGGTaGACGACGGCCAGACAACAG | + |
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Preference number: 5 (lower is better) Translates to: GTGGAGQIGMQRPPRGPGSVKVG*TTARQQ Trigger: CTGTTGTCTGGCCGTCGTCAACCCCACCTTGACTGA...CCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CAA 90 bp | AGCCCAAGGACGGGCTCAACACTCAGTCAAGGTGGGGTTGACGACGGCCAGACACGCTCGAGCGCCTCCTaGTGGTCGGTCCAGGACGAG | + |
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Preference number: 5 (lower is better) Translates to: SPRTGSTLSQGGVDDGQTRSSAS*WSVQDE Trigger: CTCGTCCTGGACCGACCACAAGGAGGCGCTCGAGCG...TGTCTGGCCGTCGTCAACCCCACCTTGACTGAGTGTTGAGCCCGTCCTTGGGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS-3UTR CAA 90 bp | TCCCCACTTCCAGGGACGCACAATAGCAGAGCCACTTACACGCTGGGGAGGGGGGCGGTGCAGGGCAAATaGGTATGCAGCGTCCGCCCC | + |
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Preference number: 5 (lower is better) Translates to: SPLPGTHNSRATYTLGRGAVQGK*VCSVRP Trigger: GGGGCGGACGCTGCATACCAATTTGCCCTGCACCGC...CCCCCTCCCCAGCGTGTAAGTGGCTCTGCTATTGTGCGTCCCTGGAAGTGGGGA 64% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS CCA 72 bp | GCAGGGGCTCCGGCGACAGCGTCCACGTCGCGCTCATaGCTCACATCGCCGCGCGCCCCTGGCTTCGACCCG | + |
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Preference number: 6 (lower is better) Translates to: AGAPATASTSRS*LTSPRAPGFDP Trigger: CGGGTCGAAGCCAGGGGCGCGCGGCGATGTGAGCCATGAGCGCGACGTGGACGCTGTCGCCGGAGCCCCTGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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| CDS GCA 72 bp | ACGAGGCGGGCATGCGGCTGTAGGGGTCGAGCAGGATaGGCACGCAGCGCACCATCAACAGCACCAGCACCA | + |
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Preference number: 6 (lower is better) Translates to: TRRACGCRGRAG*ARSAPSTAPAP Trigger: TGGTGCTGGTGCTGTTGATGGTGCGCTGCGTGCGCATCCTGCTCGACCCCTACAGCCGCATGCCCGCCTCGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000318978.6 |
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