RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CRCP (Homo sapiens)

Ensembl gene IDs: ENSG00000241258

Ensembl transcript IDs: ENST00000338592.5, ENST00000360415.7, ENST00000395326.8, ENST00000398684.6, ENST00000431089.6, ENST00000486848.1, ENST00000492264.1

Found 262 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATCCTCTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATaGAACGCCGGGGCCAGCTGTGCTCTTCTATGCTGGGTCCTCTTC +
Preference number: 1 (lower is better)
Translates to: ILSTSRKWLPGLLTS*NAGASCALLCWVLF
Trigger: GAAGAGGACCCAGCATAGAAGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR GCA 90 bp TCTGCAGGCAGAATGCTGGTGACGGTGTGGAGAAGAGCTTCAATCTaGTCCTCCGTGAGCCGCTCTTCACTCTCTTCCACCATCAGCTGG +
Preference number: 1 (lower is better)
Translates to: SAGRMLVTVWRRASI*SSVSRSSLSSTISW
Trigger: CCAGCTGATGGTGGAAGAGAGTGAAGAGCGGCTCACGGAGGAGCAGATTGAAGCTCTTCTCCACACCGTCACCAGCATTCTGCCTGCAGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR GCA 90 bp ATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTaGTCTTCTATGCTGGGTCCTCTTCGTCCATTGCCACATTGCTGT +
Preference number: 1 (lower is better)
Translates to: MAARPSDFMKRRGQL*SSMLGPLRPLPHCC
Trigger: ACAGCAATGTGGCAATGGACGAAGAGGACCCAGCATAGAAGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR CCA 90 bp GAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTaGGGTGGTCAGAAAGGCAGCCAACACTGTTTCTGCTGCCACTGT +
Preference number: 1 (lower is better)
Translates to: EYEAPALGCCLRAGK*GGQKGSQHCFCCHC
Trigger: ACAGTGGCAGCAGAAACAGTGTTGGCTGCCTTTCTGACCACCCCACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR TCA 90 bp AATAAACAATCCTCTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTaGCTTCATGAAACGCCGGGGCCAGCTGTGCTCTTCTATGCTGGG +
Preference number: 1 (lower is better)
Translates to: NKQSSQRPGNGCQAF*LHETPGPAVLFYAG
Trigger: CCCAGCATAGAAGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATTGTTTATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR GCA 90 bp AGGCAGCCAACACTGTTTCTGCTGCCACTGTCACTAAGCCTGGAGTaGCCGTTTTCAACTGCAGTGATCTGGTCCCTAACATTTAGCCTA +
Preference number: 1 (lower is better)
Translates to: RQPTLFLLPLSLSLE*PFSTAVIWSLTFSL
Trigger: TAGGCTAAATGTTAGGGACCAGATCACTGCAGTTGAAAACGGGCACTCCAGGCTTAGTGACAGTGGCAGCAGAAACAGTGTTGGCTGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR CCA 90 bp CCACTGTCACTAAGCCTGGAGTGCCCGTTTTCAACTGCAGTGATCTaGTCCCTAACATTTAGCCTAAACAGTGAGCTGGTAAACAAAGCC +
Preference number: 1 (lower is better)
Translates to: PLSLSLECPFSTAVI*SLTFSLNSELVNKA
Trigger: GGCTTTGTTTACCAGCTCACTGTTTAGGCTAAATGTTAGGGACCAGATCACTGCAGTTGAAAACGGGCACTCCAGGCTTAGTGACAGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR CCA 90 bp TTTAAAGGAACAAACAATTTGACTGTTGTGCAAATGAGGCTTACCTaGTCTGAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCA +
Preference number: 1 (lower is better)
Translates to: FKGTNNLTVVQMRLT*SEYEAPALGCCLRA
Trigger: TGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTCAGACCAGGTAAGCCTCATTTGCACAACAGTCAAATTGTTTGTTCCTTTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR TCA 90 bp ACCATCAGCTGGATCTCCACAGCAGTCACAGGCCGGTGGTTCAGCAGCTGGAGCGGCCTTCTGACTTCATaGAACGCCGGGGCCAGCTGT +
Preference number: 2 (lower is better)
Translates to: TISWISTAVTGRWFSSWSGLLTS*NAGASC
Trigger: ACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCC...GCTCCAGCTGCTGAACCACCGGCCTGTGACTGCTGTGGAGATCCAGCTGATGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR-3UTR GCA 90 bp CCTGGTCTGAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTCGCCGGGGCCAGCTGTaGTCTTCTATGCTGGGTCCT +
Preference number: 2 (lower is better)
Translates to: PGLNMKHLPWAAVSGQESRRGQL*SSMLGP
Trigger: AGGACCCAGCATAGAAGAGCACAGCTGGCCCCGGCG...ACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTCAGACCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR-3UTR CCA 90 bp CCAGCTACTCAGGAGGCTAAGGCACCAGAATCGCTTGAATCTGGGAGGCAGAGGAGACCTCCCCACAACTaGGGCAAAGGCCGTGGAGGA +
Preference number: 2 (lower is better)
Translates to: PATQEAKAPESLESGRQRRPPHN*GKGRGG
Trigger: TCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCT...CCTCTGCCTCCCAGATTCAAGCGATTCTGGTGCCTTAGCCTCCTGAGTAGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR TCA 90 bp GGAAAGTGGGGTGGTCAGAAAGGCAGCCAACACTGTTTCTGCTGCCACTGTCACGGCCTTCTGACTTCATaGAACGCCGGGGCCAGCTGT +
Preference number: 2 (lower is better)
Translates to: GKWGGQKGSQHCFCCHCHGLLTS*NAGASC
Trigger: ACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCC...GTGACAGTGGCAGCAGAAACAGTGTTGGCTGCCTTTCTGACCACCCCACTTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR GCA 90 bp GCACAGAGACCTCCCCACAACTGGGGCAAAGGCCGTGGAGGAAATCTTTCAAGCCCACCTTCAGCTCTCTaGCCTGACAACCTCAGCCTG +
Preference number: 2 (lower is better)
Translates to: AQRPPHNWGKGRGGNLSSPPSAL*PDNLSL
Trigger: CAGGCTGAGGTTGTCAGGGCAGAGAGCTGAAGGTGG...GCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
3UTR-3UTR TCA 90 bp CTCTGCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAAGGCACGGCCTTCTGACTTCATaGAACGCCGGGGCCAGCTGT +
Preference number: 2 (lower is better)
Translates to: LCPDNLSLFSPCFFSPRHGLLTS*NAGASC
Trigger: ACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCC...GTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
3UTR-3UTR TCA 90 bp GGTGTGGGCCGCTACACCTGGCCCCAATCTGGTACTTTCAATGTTGCCTATAAAGGCTGCCAGGCCTTCTaGCTTCATGAAACGCCGGGG +
Preference number: 2 (lower is better)
Translates to: GVGRYTWPQSGTFNVAYKGCQAF*LHETPG
Trigger: CCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCC...TTTATAGGCAACATTGAAAGTACCAGATTGGGGCCAGGTGTAGCGGCCCACACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR TCA 90 bp GAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTGGGGTGGTGAAATTCCTCTAAGGTaGGCCAAGGTCAGTGGCTCA +
Preference number: 2 (lower is better)
Translates to: EYEAPALGCCLRAGKWGGEIPLR*AKVSGS
Trigger: TGAGCCACTGACCTTGGCTCACCTTAGAGGAATTTC...ACCACCCCACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CCA 90 bp GCACAGAGACCTCCCCACAACTGGGGCAAAGGCCGTGGAGGAAATCTTTCAAGCTCAACGTCCAGGAAATaGCTGCCAGGCCTTCTGACT +
Preference number: 2 (lower is better)
Translates to: AQRPPHNWGKGRGGNLSSSTSRK*LPGLLT
Trigger: AGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGA...GCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
3UTR-3UTR CCA 90 bp CCAGCTACTCAGGAGGCTAAGGCACCAGAATCGCTTGAATCTGGGAGGCAGAGGCTGGGGCAAAGGCCGTaGAGGAAATCTTTCAAGCAC +
Preference number: 2 (lower is better)
Translates to: PATQEAKAPESLESGRQRLGQRP*RKSFKH
Trigger: GTGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAG...CCTCTGCCTCCCAGATTCAAGCGATTCTGGTGCCTTAGCCTCCTGAGTAGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CCA 90 bp GGGGCTCTAGAGCTGTTGAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTAGACCTCCCCACAACTaGGGCAAAGGCCGTGGAGGA +
Preference number: 2 (lower is better)
Translates to: GALELLKDWPGRFFSYLCRPPHN*GKGRGG
Trigger: TCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCT...ACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CCA 90 bp CCAGCAGAGAAAAGGGGCTCTAGAGCTGTTGAAGGATTGGCCAGGCCGGTTCTTCTGGGGCAAAGGCCGTaGAGGAAATCTTTCAAGCAC +
Preference number: 2 (lower is better)
Translates to: PAEKRGSRAVEGLARPVLLGQRP*RKSFKH
Trigger: GTGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAG...AAGAACCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCCTTTTCTCTGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR GCA 90 bp CCTGGTCTGAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTCCACAAAGCCAGGCCTaGTGGGATGAGGATAAAAAT +
Preference number: 2 (lower is better)
Translates to: PGLNMKHLPWAAVSGQESPQSQA*WDEDKN
Trigger: ATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGG...ACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTCAGACCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CCA 90 bp GGTCTGAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTGGGAAACTAATTAGGACATaGCCCACCAAAGGCGACACA +
Preference number: 2 (lower is better)
Translates to: GLNMKHLPWAAVSGQESGKLIRT*PTKGDT
Trigger: TGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTT...CCCACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTCAGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR GCA 90 bp GGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGCCACCTTCAGCTCTCTaGCCTGACAACCTCAGCCTG +
Preference number: 2 (lower is better)
Translates to: GQAGSFLISVVLEEIPLRPPSAL*PDNLSL
Trigger: CAGGCTGAGGTTGTCAGGGCAGAGAGCTGAAGGTGG...CCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR GCA 90 bp AATCCTCTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCCAGACTTCCAACAGTaGTCTGGGCCCCTTAGTAAG +
Preference number: 2 (lower is better)
Translates to: NPLNVQEMAARPSDFMKRPDFQQ*SGPLSK
Trigger: CTTACTAAGGGGCCCAGAGCACTGTTGGAAGTCTGG...GCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
3UTR-3UTR CCA 90 bp AATCCTCTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCTGGGGCAAAGGCCGTaGAGGAAATCTTTCAAGCAC +
Preference number: 2 (lower is better)
Translates to: NPLNVQEMAARPSDFMKRLGQRP*RKSFKH
Trigger: GTGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAG...GCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
3UTR-3UTR CCA 90 bp GGTCTGAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTGGGTCAACTGCAGTGATCTaGTCCCTAACATTTAGCCTA +
Preference number: 2 (lower is better)
Translates to: GLNMKHLPWAAVSGQESGSTAVI*SLTFSL
Trigger: TAGGCTAAATGTTAGGGACCAGATCACTGCAGTTGA...CCCACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTCAGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CCA 90 bp CCAGCTACTCAGGAGGCTAAGGCACCAGAATCGCTTGAATCTGGGAGGCAGAGGCAACAACCACATGCCTaGGGCAACTATACTTTCCAA +
Preference number: 2 (lower is better)
Translates to: PATQEAKAPESLESGRQRQQPHA*GNYTFQ
Trigger: TTGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTG...CCTCTGCCTCCCAGATTCAAGCGATTCTGGTGCCTTAGCCTCCTGAGTAGCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR TCA 90 bp AAGCAGATGAAACTAATTAGGACATGGCCCACCAAAGGCGACACAAGCATTTTCGGCCTTCTGACTTCATaGAACGCCGGGGCCAGCTGT +
Preference number: 2 (lower is better)
Translates to: KQMKLIRTWPTKGDTSIFGLLTS*NAGASC
Trigger: ACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCC...GAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCATCTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
3UTR-3UTR TCA 90 bp GGGGCTCTAGAGCTGTTGAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTGAAATTCCTCTAAGGTaGGCCAAGGTCAGTGGCTCA +
Preference number: 2 (lower is better)
Translates to: GALELLKDWPGRFFSYLCEIPLR*AKVSGS
Trigger: TGAGCCACTGACCTTGGCTCACCTTAGAGGAATTTC...ACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR TCA 90 bp GCACAGAGACCTCCCCACAACTGGGGCAAAGGCCGTGGAGGAAATCTTTCAAGCAGATCAGTTAGTAACTaGAATACCTGTAGTCCCAGC +
Preference number: 2 (lower is better)
Translates to: AQRPPHNWGKGRGGNLSSRSVSN*NTCSPS
Trigger: GCTGGGACTACAGGTATTTCAGTTACTAACTGATCT...GCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR-3UTR CCA 90 bp GGAAAGTGGGGTGGTCAGAAAGGCAGCCAACACTGTTTCTGCTGCCACTGTCACCAAAGCCAGGCCTGCTaGGATGAGGATAAAAATCAA +
Preference number: 2 (lower is better)
Translates to: GKWGGQKGSQHCFCCHCHQSQAC*DEDKNQ
Trigger: TTGATTTTTATCCTCATCCCAGCAGGCCTGGCTTTG...GTGACAGTGGCAGCAGAAACAGTGTTGGCTGCCTTTCTGACCACCCCACTTTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CCA 90 bp GGTGTGGGCCGCTACACCTGGCCCCAATCTGGTACTTTCAATGTTGCCTATAAAATGCTGGTGACGGTGTaGAGAAGAGCTTCAATCTGC +
Preference number: 2 (lower is better)
Translates to: GVGRYTWPQSGTFNVAYKMLVTV*RRASIC
Trigger: GCAGATTGAAGCTCTTCTCCACACCGTCACCAGCAT...TTTATAGGCAACATTGAAAGTACCAGATTGGGGCCAGGTGTAGCGGCCCACACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR-3UTR GCA 90 bp TCAGCTCTCTGCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCACCACAAAGCCAGGCCTaGTGGGATGAGGATAAAAAT +
Preference number: 2 (lower is better)
Translates to: SALCPDNLSLFSPCFFSPPQSQA*WDEDKN
Trigger: ATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGG...TGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGCAGAGAGCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
3UTR-3UTR GCA 90 bp TCAGCAATATTCGCAGGACCTAAGGCAACAACCACATGCCTGGGGCAACTATACAGCTGTGCTCTTCTATaGTGGGTCCTCTTCGTCCAT +
Preference number: 2 (lower is better)
Translates to: SAIFAGPKATTTCLGQLYSCALL*WVLFVH
Trigger: ATGGACGAAGAGGACCCAGCATAGAAGAGCACAGCT...GTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTCCTGCGAATATTGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR-3UTR CCA 90 bp GACTCTAACCAGACTTCCAACAGTGCTCTGGGCCCCTTAGTAAGTTCCCAGGGACAAAGCCAGGCCTGCTaGGATGAGGATAAAAATCAA +
Preference number: 2 (lower is better)
Translates to: DSNQTSNSALGPLVSSQGQSQAC*DEDKNQ
Trigger: TTGATTTTTATCCTCATCCCAGCAGGCCTGGCTTTG...TCCCTGGGAACTTACTAAGGGGCCCAGAGCACTGTTGGAAGTCTGGTTAGAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
3UTR-3UTR CCA 90 bp GACTCTAACCAGACTTCCAACAGTGCTCTGGGCCCCTTAGTAAGTTCCCAGGGAAAACTAATTAGGACATaGCCCACCAAAGGCGACACA +
Preference number: 2 (lower is better)
Translates to: DSNQTSNSALGPLVSSQGKLIRT*PTKGDT
Trigger: TGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTT...TCCCTGGGAACTTACTAAGGGGCCCAGAGCACTGTTGGAAGTCTGGTTAGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
3UTR-3UTR CCA 90 bp GGGGCTCTAGAGCTGTTGAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTGGAGCTTCTCAGCTTTaGTCAACTTGTGGCTTTTCA +
Preference number: 2 (lower is better)
Translates to: GALELLKDWPGRFFSYLCGASQL*STCGFS
Trigger: TGAAAAGCCACAAGTTGACCAAAGCTGAGAAGCTCC...ACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR-3UTR CCA 90 bp AAGCAGATGAAACTAATTAGGACATGGCCCACCAAAGGCGACACAAGCATTTTCCGGTGGTTCAGCAGCTaGAGCTTCTCAGCTTTGGTC +
Preference number: 2 (lower is better)
Translates to: KQMKLIRTWPTKGDTSIFRWFSS*SFSALV
Trigger: GACCAAAGCTGAGAAGCTCCAGCTGCTGAACCACCG...GAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCATCTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR-3UTR TCA 90 bp GGGCAGGAGGGTTGGAAGAGAAGTAATCCAATTAGCATTGAAAATAAGAGCGCCGAAATTCCTCTAAGGTaGGCCAAGGTCAGTGGCTCA +
Preference number: 2 (lower is better)
Translates to: GQEGWKRSNPISIENKSAEIPLR*AKVSGS
Trigger: TGAGCCACTGACCTTGGCTCACCTTAGAGGAATTTC...GGCGCTCTTATTTTCAATGCTAATTGGATTACTTCTCTTCCAACCCTCCTGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR TCA 90 bp CGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGTGAGCCAACAATCTGCTCCTCCGTaGGCCGCTCTTCACTCTCTT +
Preference number: 2 (lower is better)
Translates to: RFFSYLCCSRGNSSKVSQQSAPP*AALHSL
Trigger: AAGAGAGTGAAGAGCGGCTCACGGAGGAGCAGATTG...TTGGCTCACCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR-3UTR CCA 90 bp TTGAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCAACGTCCAGGAAATaGCTGCCAGGCCTTCTGACT +
Preference number: 2 (lower is better)
Translates to: LKDWPGRFFSYLCCSRGNSTSRK*LPGLLT
Trigger: AGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGA...ATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CCA 90 bp TCAGCAATATTCGCAGGACCTAAGGCAACAACCACATGCCTGGGGCAACTATACCAAAGCCAGGCCTGCTaGGATGAGGATAAAAATCAA +
Preference number: 2 (lower is better)
Translates to: SAIFAGPKATTTCLGQLYQSQAC*DEDKNQ
Trigger: TTGATTTTTATCCTCATCCCAGCAGGCCTGGCTTTG...GTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTCCTGCGAATATTGCTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CCA 90 bp GCAGTGATCTGGTCCCTAACATTTAGCCTAAACAGTGAGCTGGTAAACAAAGCCGAGCTGTTGAAGGATTaGCCAGGCCGGTTCTTTTCT +
Preference number: 2 (lower is better)
Translates to: AVIWSLTFSLNSELVNKAELLKD*PGRFFS
Trigger: AGAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTC...GGCTTTGTTTACCAGCTCACTGTTTAGGCTAAATGTTAGGGACCAGATCACTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR GCA 90 bp ACTGCAGTGATCTGGTCCCTAACATTTAGCCTAAACAGTGAGCTGGTAAACAAACCAGACTTCCAACAGTaGTCTGGGCCCCTTAGTAAG +
Preference number: 2 (lower is better)
Translates to: TAVIWSLTFSLNSELVNKPDFQQ*SGPLSK
Trigger: CTTACTAAGGGGCCCAGAGCACTGTTGGAAGTCTGG...TTTGTTTACCAGCTCACTGTTTAGGCTAAATGTTAGGGACCAGATCACTGCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CCA 90 bp TATTCAGTGTTAAAAAGAGACATTACGACTAGCCTGGCCAATATGGCAAAACCCGGCCTCCCGAGTAGCTaGGATTACAGGAATGTGCCA +
Preference number: 2 (lower is better)
Translates to: YSVLKRDITTSLANMAKPGLPSS*DYRNVP
Trigger: TGGCACATTCCTGTAATCCCAGCTACTCGGGAGGCC...GGGTTTTGCCATATTGGCCAGGCTAGTCGTAATGTCTCTTTTTAACACTGAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR GCA 90 bp AAGCAGATGAAACTAATTAGGACATGGCCCACCAAAGGCGACACAAGCATTTTCCCACAAAGCCAGGCCTaGTGGGATGAGGATAAAAAT +
Preference number: 2 (lower is better)
Translates to: KQMKLIRTWPTKGDTSIFPQSQA*WDEDKN
Trigger: ATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGG...GAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCATCTGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
3UTR-3UTR CCA 90 bp GCAGTGATCTGGTCCCTAACATTTAGCCTAAACAGTGAGCTGGTAAACAAAGCCAAACTAATTAGGACATaGCCCACCAAAGGCGACACA +
Preference number: 2 (lower is better)
Translates to: AVIWSLTFSLNSELVNKAKLIRT*PTKGDT
Trigger: TGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTT...GGCTTTGTTTACCAGCTCACTGTTTAGGCTAAATGTTAGGGACCAGATCACTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CCA 90 bp GGGCAGGAGGGTTGGAAGAGAAGTAATCCAATTAGCATTGAAAATAAGAGCGCCAAACTAATTAGGACATaGCCCACCAAAGGCGACACA +
Preference number: 2 (lower is better)
Translates to: GQEGWKRSNPISIENKSAKLIRT*PTKGDT
Trigger: TGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTT...GGCGCTCTTATTTTCAATGCTAATTGGATTACTTCTCTTCCAACCCTCCTGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CCA 90 bp TATTCAGTGTTAAAAAGAGACATTACGACTAGCCTGGCCAATATGGCAAAACCCGAGCTGTTGAAGGATTaGCCAGGCCGGTTCTTTTCT +
Preference number: 2 (lower is better)
Translates to: YSVLKRDITTSLANMAKPELLKD*PGRFFS
Trigger: AGAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTC...GGGTTTTGCCATATTGGCCAGGCTAGTCGTAATGTCTCTTTTTAACACTGAATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CCA 90 bp TATTCAGTGTTAAAAAGAGACATTACGACTAGCCTGGCCAATATGGCAAAACCCTGTGCTCTTCTATGCTaGGTCCTCTTCGTCCATTGC +
Preference number: 2 (lower is better)
Translates to: YSVLKRDITTSLANMAKPCALLC*VLFVHC
Trigger: GCAATGGACGAAGAGGACCCAGCATAGAAGAGCACA...GGGTTTTGCCATATTGGCCAGGCTAGTCGTAATGTCTCTTTTTAACACTGAATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR-3UTR GCA 90 bp AAAGGAACAAACAATTTGACTGTTGTGCAAATGAGGCTTACCTGGTCTGAATATCCAGACTTCCAACAGTaGTCTGGGCCCCTTAGTAAG +
Preference number: 2 (lower is better)
Translates to: KGTNNLTVVQMRLTWSEYPDFQQ*SGPLSK
Trigger: CTTACTAAGGGGCCCAGAGCACTGTTGGAAGTCTGG...ATATTCAGACCAGGTAAGCCTCATTTGCACAACAGTCAAATTGTTTGTTCCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CCA 90 bp TATTCAGTGTTAAAAAGAGACATTACGACTAGCCTGGCCAATATGGCAAAACCCCAACAACCACATGCCTaGGGCAACTATACTTTCCAA +
Preference number: 2 (lower is better)
Translates to: YSVLKRDITTSLANMAKPQQPHA*GNYTFQ
Trigger: TTGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTG...GGGTTTTGCCATATTGGCCAGGCTAGTCGTAATGTCTCTTTTTAACACTGAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CCA 90 bp AAGAAAAACCACCTAACATATTCAGTGTTAAAAAGAGACATTACGACTAGCCTGCAAATGAGGCTTACCTaGTCTGAATATGAAGCACCT +
Preference number: 2 (lower is better)
Translates to: KKNHLTYSVLKRDITTSLQMRLT*SEYEAP
Trigger: AGGTGCTTCATATTCAGACCAGGTAAGCCTCATTTG...CAGGCTAGTCGTAATGTCTCTTTTTAACACTGAATATGTTAGGTGGTTTTTCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
3UTR TCA 72 bp ACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATaGAACGCCGGGGCCAGCTGTGCTCTTCTATGCTGG +
Preference number: 3 (lower is better)
Translates to: TSRKWLPGLLTS*NAGASCALLCW
Trigger: CCAGCATAGAAGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR TCA 72 bp TCCTCTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTaGCTTCATGAAACGCCGGGGCCAGCTGTGCTCTTC +
Preference number: 3 (lower is better)
Translates to: SSQRPGNGCQAF*LHETPGPAVLF
Trigger: GAAGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR GCA 72 bp AGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTaGTCTTCTATGCTGGGTCCTCTTCGTCCATTGCCA +
Preference number: 3 (lower is better)
Translates to: RPSDFMKRRGQL*SSMLGPLRPLP
Trigger: TGGCAATGGACGAAGAGGACCCAGCATAGAAGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR-3UTR CAA 90 bp CCAGCTACTCAGGAGGCTAAGGCACCAGAATCGCTTGAATCTGGGAGGCAGAGGAGAGCTGTTGAAGGATaGGCCAGGCCGGTTCTTTTC +
Preference number: 3 (lower is better)
Translates to: PATQEAKAPESLESGRQRRAVEG*ARPVLF
Trigger: GAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTCT...CCTCTGCCTCCCAGATTCAAGCGATTCTGGTGCCTTAGCCTCCTGAGTAGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
3UTR CCA 72 bp ATCTCCACAGCAGTCACAGGCCGGTGGTTCAGCAGCTaGAGCTTCTCAGCTTTGGTCAACTTGTGGCTTTTC +
Preference number: 3 (lower is better)
Translates to: ISTAVTGRWFSS*SFSALVNLWLF
Trigger: GAAAAGCCACAAGTTGACCAAAGCTGAGAAGCTCCAGCTGCTGAACCACCGGCCTGTGACTGCTGTGGAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR CCA 72 bp AAGTTCCCAGGGAAGCAGATGAAACTAATTAGGACATaGCCCACCAAAGGCGACACAAGCATTTTCCCCGCT +
Preference number: 3 (lower is better)
Translates to: KFPGKQMKLIRT*PTKGDTSIFPA
Trigger: AGCGGGGAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCATCTGCTTCCCTGGGAACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
3UTR-3UTR CAA 90 bp GGAAAGTGGGGTGGTCAGAAAGGCAGCCAACACTGTTTCTGCTGCCACTGTCACCTTTTCTTATCTCTGTaGTTCTCGAGGAAATTCCTC +
Preference number: 3 (lower is better)
Translates to: GKWGGQKGSQHCFCCHCHLFLSL*FSRKFL
Trigger: GAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAG...GTGACAGTGGCAGCAGAAACAGTGTTGGCTGCCTTTCTGACCACCCCACTTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR CCA 72 bp CTAAGCCTGGAGTGCCCGTTTTCAACTGCAGTGATCTaGTCCCTAACATTTAGCCTAAACAGTGAGCTGGTA +
Preference number: 3 (lower is better)
Translates to: LSLECPFSTAVI*SLTFSLNSELV
Trigger: TACCAGCTCACTGTTTAGGCTAAATGTTAGGGACCAGATCACTGCAGTTGAAAACGGGCACTCCAGGCTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR CCA 72 bp ACAAACAATTTGACTGTTGTGCAAATGAGGCTTACCTaGTCTGAATATGAAGCACCTGCCCTGGGCTGCTGT +
Preference number: 3 (lower is better)
Translates to: TNNLTVVQMRLT*SEYEAPALGCC
Trigger: ACAGCAGCCCAGGGCAGGTGCTTCATATTCAGACCAGGTAAGCCTCATTTGCACAACAGTCAAATTGTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CAA 90 bp TGTGGAAAATCCGATTTTCAGCAATATTCGCAGGACCTAAGGCAACAACCACATTGGAGCTTCTCAGCTTaGGTCAACTTGTGGCTTTTC +
Preference number: 3 (lower is better)
Translates to: CGKSDFQQYSQDLRQQPHWSFSA*VNLWLF
Trigger: GAAAAGCCACAAGTTGACCAAAGCTGAGAAGCTCCA...ATGTGGTTGTTGCCTTAGGTCCTGCGAATATTGCTGAAAATCGGATTTTCCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR GCA 72 bp TCAGCAATATTCGCAGGACCTAAGGCAACAACCACATaGCTGGGGCAACTATACTTTCCAAATCCTGAATAT +
Preference number: 3 (lower is better)
Translates to: SAIFAGPKATTT*LGQLYFPNPEY
Trigger: ATATTCAGGATTTGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTCCTGCGAATATTGCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
3UTR-3UTR CAA 90 bp TATTCAGTGTTAAAAAGAGACATTACGACTAGCCTGGCCAATATGGCAAAACCCGGTCCTCTTCGTCCATaGCCACATTGCTGTTTGTAT +
Preference number: 3 (lower is better)
Translates to: YSVLKRDITTSLANMAKPGPLRP*PHCCLY
Trigger: ATACAAACAGCAATGTGGCAATGGACGAAGAGGACC...GGGTTTTGCCATATTGGCCAGGCTAGTCGTAATGTCTCTTTTTAACACTGAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR-3UTR CAA 90 bp CGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGTGAGCCAATCGTCCATTGCCACATaGCTGTTTGTATTCTTCTTC +
Preference number: 3 (lower is better)
Translates to: RFFSYLCCSRGNSSKVSQSSIAT*LFVFFF
Trigger: GAAGAAGAATACAAACAGCAATGTGGCAATGGACGA...TTGGCTCACCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
3UTR CCA 72 bp CAATATTCGCAGGACCTAAGGCAACAACCACATGCCTaGGGCAACTATACTTTCCAAATCCTGAATATTAAA +
Preference number: 3 (lower is better)
Translates to: QYSQDLRQQPHA*GNYTFQILNIK
Trigger: TTTAATATTCAGGATTTGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTCCTGCGAATATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp GAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCTCTCATCCTTCACTTCCATaGCGTCCCGCCTCGTCGCCC +
Preference number: 4 (lower is better)
Translates to: EMAARPSDFMKRRGQLCSHPSLP*RPASSP
Trigger: GGGCGACGAGGCGGGACGTCATGGAAGTGAAGGATG...AGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp CTTCATGAAACGCCGGGGCCAGCTGTGCTCTTCTATGCTGGGTCCTCTTCGTCCCATCCTTCACTTCCATaGCGTCCCGCCTCGTCGCCC +
Preference number: 4 (lower is better)
Translates to: LHETPGPAVLFYAGSSSSHPSLP*RPASSP
Trigger: GGGCGACGAGGCGGGACGTCATGGAAGTGAAGGATG...GGACGAAGAGGACCCAGCATAGAAGAGCACAGCTGGCCCCGGCGTTTCATGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
CDS-3UTR CCA 90 bp CTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCGGGGACTGGGATGGATaGACGGGCAGGAGGGTTGGA +
Preference number: 4 (lower is better)
Translates to: LNVQEMAARPSDFMKRRGGDWDG*TGRRVG
Trigger: TCCAACCCTCCTGCCCGTCCATCCATCCCAGTCCCC...GCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCTCTAGACCTCCCCACAACTaGGGCAAAGGCCGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: EMAARPSDFMKRRGQLCSRPPHN*GKGRGG
Trigger: TCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCT...AGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR TCA 90 bp TGCACAGAGACCTCCCCACAACTGGGGCAAAGGCCGTGGAGGAAATCTTTCAAGGGCTGCCAGGCCTTCTaGCTTCATGAAACGCCGGGG +
Preference number: 4 (lower is better)
Translates to: CTETSPQLGQRPWRKSFKGCQAF*LHETPG
Trigger: CCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCC...CTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR TCA 90 bp CCTGGTCTGAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTAGGCAGAGGTTGCAGTaGGCCTGGATGGTGCCACTG +
Preference number: 4 (lower is better)
Translates to: PGLNMKHLPWAAVSGQESRQRLQ*AWMVPL
Trigger: CAGTGGCACCATCCAGGCTCACTGCAACCTCTGCCT...ACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTCAGACCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360415.7
CDS-3UTR TCA 90 bp GTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGCTGGTCTTGAACTCCTaGCCTCATGATCCGCTAGCC +
Preference number: 4 (lower is better)
Translates to: VQEMAARPSDFMKRRGQLLVLNS*PHDPLA
Trigger: GGCTAGCGGATCATGAGGTCAGGAGTTCAAGACCAG...CAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp GAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCTCTCCACCTTCAGCTCTCTaGCCTGACAACCTCAGCCTG +
Preference number: 4 (lower is better)
Translates to: EMAARPSDFMKRRGQLCSPPSAL*PDNLSL
Trigger: CAGGCTGAGGTTGTCAGGGCAGAGAGCTGAAGGTGG...AGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp CAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCCGGTGGTTCAGCAGCTaGAGCTTCTCAGCTTTGGTC +
Preference number: 4 (lower is better)
Translates to: QEMAARPSDFMKRRGQLCRWFSS*SFSALV
Trigger: GACCAAAGCTGAGAAGCTCCAGCTGCTGAACCACCG...GCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp GCACAGAGACCTCCCCACAACTGGGGCAAAGGCCGTGGAGGAAATCTTTCAAGCAGACCTCCCCACAACTaGGGCAAAGGCCGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: AQRPPHNWGKGRGGNLSSRPPHN*GKGRGG
Trigger: TCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCT...GCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR TCA 90 bp CCAGCAGAGAAAAGGGGCTCTAGAGCTGTTGAAGGATTGGCCAGGCCGGTTCTTGGCCTTCTGACTTCATaGAACGCCGGGGCCAGCTGT +
Preference number: 4 (lower is better)
Translates to: PAEKRGSRAVEGLARPVLGLLTS*NAGASC
Trigger: ACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCC...AAGAACCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCCTTTTCTCTGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp CTCTGCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAAGGCACCGCCGGGGCCAGCTGTaGTCTTCTATGCTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: LCPDNLSLFSPCFFSPRHRRGQL*SSMLGP
Trigger: AGGACCCAGCATAGAAGAGCACAGCTGGCCCCGGCG...GTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR GCA 90 bp GGTCTGAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTGGGAGTGAGCAGAGATCGTaGCACTGCACTCCTGGGCAA +
Preference number: 4 (lower is better)
Translates to: GLNMKHLPWAAVSGQESGSEQRS*HCTPGQ
Trigger: TTGCCCAGGAGTGCAGTGGCACGATCTCTGCTCACT...CCCACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTCAGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCTCTCGGTGGTTCAGCAGCTaGAGCTTCTCAGCTTTGGTC +
Preference number: 4 (lower is better)
Translates to: EMAARPSDFMKRRGQLCSRWFSS*SFSALV
Trigger: GACCAAAGCTGAGAAGCTCCAGCTGCTGAACCACCG...AGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp GTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTCAACGTCCAGGAAATaGCTGCCAGGCCTTCTGACT +
Preference number: 4 (lower is better)
Translates to: VQEMAARPSDFMKRRGQLSTSRK*LPGLLT
Trigger: AGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGA...CAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR CCA 90 bp GAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTGGGGTGGTAGCCTCCCGAGTAGCTaGGATCACAGGCATGCAACA +
Preference number: 4 (lower is better)
Translates to: EYEAPALGCCLRAGKWGGSLPSS*DHRHAT
Trigger: TGTTGCATGCCTGTGATCCCAGCTACTCGGGAGGCT...ACCACCCCACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp GACTCTAACCAGACTTCCAACAGTGCTCTGGGCCCCTTAGTAAGTTCCCAGGGAGGCCTTCTGACTTCATaGAACGCCGGGGCCAGCTGT +
Preference number: 4 (lower is better)
Translates to: DSNQTSNSALGPLVSSQGGLLTS*NAGASC
Trigger: ACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCC...TCCCTGGGAACTTACTAAGGGGCCCAGAGCACTGTTGGAAGTCTGGTTAGAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR TCA 90 bp AATCCTCTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCTCTCAGCTACTTCCATaGCGTCCCGCCTCGTCGCCC +
Preference number: 4 (lower is better)
Translates to: NPLNVQEMAARPSDFMKRSQLLP*RPASSP
Trigger: GGGCGACGAGGCGGGACGTCATGGAAGTAGCTGAGA...GCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000398684.6
CDS-3UTR GCA 90 bp GGAAAGTGGGGTGGTCAGAAAGGCAGCCAACACTGTTTCTGCTGCCACTGTCACCTCGTCGCCCCTAGCTaGCAGCAGACAAAGAACCTC +
Preference number: 4 (lower is better)
Translates to: GKWGGQKGSQHCFCCHCHLVAPS*QQTKNL
Trigger: GAGGTTCTTTGTCTGCTGGCAGCTAGGGGCGACGAG...GTGACAGTGGCAGCAGAAACAGTGTTGGCTGCCTTTCTGACCACCCCACTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp CAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCAGCTGTGCTCTTCTATaGTGGGTCCTCTTCGTCCAT +
Preference number: 4 (lower is better)
Translates to: QEMAARPSDFMKRRGQLCSCALL*WVLFVH
Trigger: ATGGACGAAGAGGACCCAGCATAGAAGAGCACAGCT...GCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR GCA 90 bp GAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTGGGGTGGTCCAGACTTCCAACAGTaGTCTGGGCCCCTTAGTAAG +
Preference number: 4 (lower is better)
Translates to: EYEAPALGCCLRAGKWGGPDFQQ*SGPLSK
Trigger: CTTACTAAGGGGCCCAGAGCACTGTTGGAAGTCTGG...ACCACCCCACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp AATCCTCTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCCGGGAGGCAGAGGTTaGAGTGAGCCTGGATGGTGC +
Preference number: 4 (lower is better)
Translates to: NPLNVQEMAARPSDFMKRPGGRG*SEPGWC
Trigger: GCACCATCCAGGCTCACTGCAACCTCTGCCTCCCGG...GCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360415.7
CDS-3UTR GCA 90 bp GGTCTGAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTGGGTTGCCCAGGCTGGAGTaGAATGGTGCAATCTTGGCT +
Preference number: 4 (lower is better)
Translates to: GLNMKHLPWAAVSGQESGLPRLE*NGAILA
Trigger: AGCCAAGATTGCACCATTGCACTCCAGCCTGGGCAA...CCCACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTCAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGATGCTGGTGACGGTGTaGAGAAGAGCTTCAATCTGC +
Preference number: 4 (lower is better)
Translates to: VQEMAARPSDFMKRRGQLMLVTV*RRASIC
Trigger: GCAGATTGAAGCTCTTCTCCACACCGTCACCAGCAT...CAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR CCA 90 bp CAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCTGTGCTCTTCTATGCTaGGTCCTCTTCGTCCATTGC +
Preference number: 4 (lower is better)
Translates to: QEMAARPSDFMKRRGQLCCALLC*VLFVHC
Trigger: GCAATGGACGAAGAGGACCCAGCATAGAAGAGCACA...GCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR CCA 90 bp CTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCTCAACGTCCAGGAAATaGCTGCCAGGCCTTCTGACT +
Preference number: 4 (lower is better)
Translates to: LNVQEMAARPSDFMKRRGSTSRK*LPGLLT
Trigger: AGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGA...GCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR CCA 90 bp GAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCTCTCTGGGGCAAAGGCCGTaGAGGAAATCTTTCAAGCAC +
Preference number: 4 (lower is better)
Translates to: EMAARPSDFMKRRGQLCSLGQRP*RKSFKH
Trigger: GTGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAG...AGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR TCA 90 bp AATCCTCTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCGGCCTTCTGACTTCATaGAACGCCGGGGCCAGCTGT +
Preference number: 4 (lower is better)
Translates to: NPLNVQEMAARPSDFMKRGLLTS*NAGASC
Trigger: ACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCC...GCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR TCA 90 bp GCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAAGGCACAAATGGCTGCCAGGCCTTCTaGCTTCATGAAACGCCGGGG +
Preference number: 4 (lower is better)
Translates to: ALTTSACFHHVSSPQGTNGCQAF*LHETPG
Trigger: CCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCC...ATTTGTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR TCA 90 bp GTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGGTTTTTCCATGTTGGTaGGGCTGGTCTCAAACTCCT +
Preference number: 4 (lower is better)
Translates to: VQEMAARPSDFMKRRGQLVFPCW*GWSQTP
Trigger: AGGAGTTTGAGACCAGCCTCACCAACATGGAAAAAC...CAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp TCAGCAATATTCGCAGGACCTAAGGCAACAACCACATGCCTGGGGCAACTATACCGCCGGGGCCAGCTGTaGTCTTCTATGCTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: SAIFAGPKATTTCLGQLYRRGQL*SSMLGP
Trigger: AGGACCCAGCATAGAAGAGCACAGCTGGCCCCGGCG...GTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTCCTGCGAATATTGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp GGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGCCCGGAACCTCGCGCTaGGCGTTCCCCTTTTTCGGG +
Preference number: 4 (lower is better)
Translates to: GQAGSFLISVVLEEIPLRPGTSR*AFPFFG
Trigger: CCCGAAAAAGGGGAACGCGCAGCGCGAGGTTCCGGG...CCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000360415.7
CDS-3UTR CCA 90 bp CTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCTGTGCTCTTCTATGCTaGGTCCTCTTCGTCCATTGC +
Preference number: 4 (lower is better)
Translates to: LNVQEMAARPSDFMKRRGCALLC*VLFVHC
Trigger: GCAATGGACGAAGAGGACCCAGCATAGAAGAGCACA...GCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR CCA 90 bp GCACAGAGACCTCCCCACAACTGGGGCAAAGGCCGTGGAGGAAATCTTTCAAGCCTGGGGCAAAGGCCGTaGAGGAAATCTTTCAAGCAC +
Preference number: 4 (lower is better)
Translates to: AQRPPHNWGKGRGGNLSSLGQRP*RKSFKH
Trigger: GTGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAG...GCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp GAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCTCTGAGCTGTTGAAGGATTaGCCAGGCCGGTTCTTTTCT +
Preference number: 4 (lower is better)
Translates to: EMAARPSDFMKRRGQLCSELLKD*PGRFFS
Trigger: AGAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTC...AGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp CTCTGCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAAGGCACTGCAGTGAGCCTGGATaGTGCCACTGTACTCCAGCC +
Preference number: 4 (lower is better)
Translates to: LCPDNLSLFSPCFFSPRHCSEPG*CHCTPA
Trigger: GGCTGGAGTACAGTGGCACCATCCAGGCTCACTGCA...GTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGCAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000360415.7
CDS-3UTR CCA 90 bp GGACCTAAGGCAACAACCACATGCCTGGGGCAACTATACTTTCCAAATCCTGAAGCCTGGGGACTGGGATaGATGGACGGGCAGGAGGGT +
Preference number: 4 (lower is better)
Translates to: GPKATTTCLGQLYFPNPEAWGLG*MDGQEG
Trigger: ACCCTCCTGCCCGTCCATCCATCCCAGTCCCCAGGC...TTCAGGATTTGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp TCAGCTCTCTGCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAAAGATGCCTGGGGACTaGGATGGATGGACGGGCAGG +
Preference number: 4 (lower is better)
Translates to: SALCPDNLSLFSPCFFSPKMPGD*DGWTGR
Trigger: CCTGCCCGTCCATCCATCCCAGTCCCCAGGCATCTT...TGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGCAGAGAGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GGTGTGGGCCGCTACACCTGGCCCCAATCTGGTACTTTCAATGTTGCCTATAAACCCTGTCGGCCAGGCTaGAGTGCAATGCACGATCTG +
Preference number: 4 (lower is better)
Translates to: GVGRYTWPQSGTFNVAYKPCRPG*SAMHDL
Trigger: CAGATCGTGCATTGCACTCCAGCCTGGCCGACAGGG...TTTATAGGCAACATTGAAAGTACCAGATTGGGGCCAGGTGTAGCGGCCCACACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp CTCTGCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAAGGCACCTGGTCTTGAACTCCTaGCCTCATGATCCGCTAGCC +
Preference number: 4 (lower is better)
Translates to: LCPDNLSLFSPCFFSPRHLVLNS*PHDPLA
Trigger: GGCTAGCGGATCATGAGGTCAGGAGTTCAAGACCAG...GTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp ATGAAACTAATTAGGACATGGCCCACCAAAGGCGACACAAGCATTTTCCCCGCTCGCCGGGGCCAGCTGTaGTCTTCTATGCTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: MKLIRTWPTKGDTSIFPARRGQL*SSMLGP
Trigger: AGGACCCAGCATAGAAGAGCACAGCTGGCCCCGGCG...AGCGGGGAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR GCA 90 bp CTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCCACAAAGCCAGGCCTaGTGGGATGAGGATAAAAAT +
Preference number: 4 (lower is better)
Translates to: LNVQEMAARPSDFMKRRGPQSQA*WDEDKN
Trigger: ATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGG...GCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR GCA 90 bp AATCCTCTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCCACCTTCAGCTCTCTaGCCTGACAACCTCAGCCTG +
Preference number: 4 (lower is better)
Translates to: NPLNVQEMAARPSDFMKRPPSAL*PDNLSL
Trigger: CAGGCTGAGGTTGTCAGGGCAGAGAGCTGAAGGTGG...GCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR GCA 90 bp CCTGGTCTGAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTTCACTAAGCCTGGAGTaGCCGTTTTCAACTGCAGTG +
Preference number: 4 (lower is better)
Translates to: PGLNMKHLPWAAVSGQESSLSLE*PFSTAV
Trigger: CACTGCAGTTGAAAACGGGCACTCCAGGCTTAGTGA...ACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTCAGACCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp AGGGGCTCTAGAGCTGTTGAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGCTCTGTCGCCCAGGCTaGATCTCGGCTTACTGCAAC +
Preference number: 4 (lower is better)
Translates to: RGSRAVEGLARPVLFLSLLCRPG*ISAYCN
Trigger: GTTGCAGTAAGCCGAGATCCAGCCTGGGCGACAGAG...CAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000360415.7
CDS-3UTR TCA 90 bp GTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAAAAATCGGCCTTCTGACTTCATaGAACGCCGGGGCCAGCTGT +
Preference number: 4 (lower is better)
Translates to: VMYPTNHKARPAGMRIKIGLLTS*NAGASC
Trigger: ACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCC...GATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR TCA 90 bp ATTTTTGTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAGGCTGCCAGGCCTTCTaGCTTCATGAAACGCCGGGG +
Preference number: 4 (lower is better)
Translates to: IFVMYPTNHKARPAGMRIGCQAF*LHETPG
Trigger: CCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCC...TATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCACAAAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR TCA 90 bp GGGGCTCTAGAGCTGTTGAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTGGCACCAGAATCGCTTaGATCTGGGAGGCAGAGGTT +
Preference number: 4 (lower is better)
Translates to: GALELLKDWPGRFFSYLCGTRIA*IWEAEV
Trigger: AACCTCTGCCTCCCAGATTCAAGCGATTCTGGTGCC...ACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp ATTTTTGTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATACGCCGGGGCCAGCTGTaGTCTTCTATGCTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: IFVMYPTNHKARPAGMRIRRGQL*SSMLGP
Trigger: AGGACCCAGCATAGAAGAGCACAGCTGGCCCCGGCG...TATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCACAAAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR GCA 90 bp CTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCAAGGCAACAACCACATaGCTGGGGCAACTATACTTT +
Preference number: 4 (lower is better)
Translates to: LNVQEMAARPSDFMKRRGKATTT*LGQLYF
Trigger: AAAGTATAGTTGCCCCAGGCATGTGGTTGTTGCCTT...GCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp AATCCTCTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCAGTGAGCAGAGATCGTaGCACTGCACTCCTGGGCAA +
Preference number: 4 (lower is better)
Translates to: NPLNVQEMAARPSDFMKRSEQRS*HCTPGQ
Trigger: TTGCCCAGGAGTGCAGTGGCACGATCTCTGCTCACT...GCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTGGGGTGGTCAAAGCCAGGCCTGCTaGGATGAGGATAAAAATCAA +
Preference number: 4 (lower is better)
Translates to: EYEAPALGCCLRAGKWGGQSQAC*DEDKNQ
Trigger: TTGATTTTTATCCTCATCCCAGCAGGCCTGGCTTTG...ACCACCCCACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGAGACCTCCCCACAACTaGGGCAAAGGCCGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: GQAGSFLISVVLEEIPLRRPPHN*GKGRGG
Trigger: TCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCT...CCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCTCTAAACTAATTAGGACATaGCCCACCAAAGGCGACACA +
Preference number: 4 (lower is better)
Translates to: EMAARPSDFMKRRGQLCSKLIRT*PTKGDT
Trigger: TGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTT...AGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp GTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTCAACTGCAGTGATCTaGTCCCTAACATTTAGCCTA +
Preference number: 4 (lower is better)
Translates to: VQEMAARPSDFMKRRGQLSTAVI*SLTFSL
Trigger: TAGGCTAAATGTTAGGGACCAGATCACTGCAGTTGA...CAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp CCTGGTCTGAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTGACGGGCAGGAGGGTTaGAAGAGAAGTAATCCAATT +
Preference number: 4 (lower is better)
Translates to: PGLNMKHLPWAAVSGQESDGQEG*KRSNPI
Trigger: AATTGGATTACTTCTCTTCCAACCCTCCTGCCCGTC...ACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTCAGACCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp TTGAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATGCCTGGGGACTGGGATaGATGGACGGGCAGGAGGGT +
Preference number: 4 (lower is better)
Translates to: LKDWPGRFFSYLCCSRGNAWGLG*MDGQEG
Trigger: ACCCTCCTGCCCGTCCATCCATCCCAGTCCCCAGGC...ATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp ATGAAACTAATTAGGACATGGCCCACCAAAGGCGACACAAGCATTTTCCCCGCTAAGATGCCTGGGGACTaGGATGGATGGACGGGCAGG +
Preference number: 4 (lower is better)
Translates to: MKLIRTWPTKGDTSIFPAKMPGD*DGWTGR
Trigger: CCTGCCCGTCCATCCATCCCAGTCCCCAGGCATCTT...AGCGGGGAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAAAAATCCCCTGTCGGCCAGGCTaGAGTGCAATGCACGATCTG +
Preference number: 4 (lower is better)
Translates to: VMYPTNHKARPAGMRIKIPCRPG*SAMHDL
Trigger: CAGATCGTGCATTGCACTCCAGCCTGGCCGACAGGG...GATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp GCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAAGGCACAAATCAATCTGCTCCTCCGTaGGCCGCTCTTCACTCTCTT +
Preference number: 4 (lower is better)
Translates to: ALTTSACFHHVSSPQGTNQSAPP*AALHSL
Trigger: AAGAGAGTGAAGAGCGGCTCACGGAGGAGCAGATTG...ATTTGTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR TCA 90 bp GACCTAAGGCAACAACCACATGCCTGGGGCAACTATACTTTCCAAATCCTGAATGGCCTTCTGACTTCATaGAACGCCGGGGCCAGCTGT +
Preference number: 4 (lower is better)
Translates to: DLRQQPHAWGNYTFQILNGLLTS*NAGASC
Trigger: ACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCC...ATTCAGGATTTGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp TTGAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATGGCTGCCAGGCCTTCTaGCTTCATGAAACGCCGGGG +
Preference number: 4 (lower is better)
Translates to: LKDWPGRFFSYLCCSRGNGCQAF*LHETPG
Trigger: CCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCC...ATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp CTCTGCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAAGGCACGAAATTCCTCTAAGGTaGGCCAAGGTCAGTGGCTCA +
Preference number: 4 (lower is better)
Translates to: LCPDNLSLFSPCFFSPRHEIPLR*AKVSGS
Trigger: TGAGCCACTGACCTTGGCTCACCTTAGAGGAATTTC...GTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR GCA 90 bp GTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAAAAATCCTCGTCGCCCCTAGCTaGCAGCAGACAAAGAACCTC +
Preference number: 4 (lower is better)
Translates to: VMYPTNHKARPAGMRIKILVAPS*QQTKNL
Trigger: GAGGTTCTTTGTCTGCTGGCAGCTAGGGGCGACGAG...GATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
CDS-3UTR GCA 90 bp CAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCCGTCCATTGCCACATTaGTGTTTGTATTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: QEMAARPSDFMKRRGQLCRPLPH*CLYSSS
Trigger: AGAAGAAGAATACAAACAGCAATGTGGCAATGGACG...GCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR GCA 90 bp GGAAAGTGGGGTGGTCAGAAAGGCAGCCAACACTGTTTCTGCTGCCACTGTCACCCACAAAGCCAGGCCTaGTGGGATGAGGATAAAAAT +
Preference number: 4 (lower is better)
Translates to: GKWGGQKGSQHCFCCHCHPQSQA*WDEDKN
Trigger: ATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGG...GTGACAGTGGCAGCAGAAACAGTGTTGGCTGCCTTTCTGACCACCCCACTTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp ATGAAACTAATTAGGACATGGCCCACCAAAGGCGACACAAGCATTTTCCCCGCTCCACCTTCAGCTCTCTaGCCTGACAACCTCAGCCTG +
Preference number: 4 (lower is better)
Translates to: MKLIRTWPTKGDTSIFPAPPSAL*PDNLSL
Trigger: CAGGCTGAGGTTGTCAGGGCAGAGAGCTGAAGGTGG...AGCGGGGAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR GCA 90 bp GTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAAAAATCAGTGAGCCTGGATGGTaGCACTGTACTCCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: VMYPTNHKARPAGMRIKISEPGW*HCTPAW
Trigger: CCAGGCTGGAGTACAGTGGCACCATCCAGGCTCACT...GATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000360415.7
CDS-3UTR CCA 90 bp CTTCATGAAACGCCGGGGCCAGCTGTGCTCTTCTATGCTGGGTCCTCTTCGTCCACAATTTCAGGACTCTaGTGCCTGCATGGTGTTTTT +
Preference number: 4 (lower is better)
Translates to: LHETPGPAVLFYAGSSSSTISGL*CLHGVF
Trigger: AAAAACACCATGCAGGCACCAGAGTCCTGAAATTGT...GGACGAAGAGGACCCAGCATAGAAGAGCACAGCTGGCCCCGGCGTTTCATGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
CDS-3UTR CCA 90 bp GAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCAGACCTCCCCACAACTaGGGCAAAGGCCGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: EGLARPVLFLSLLFSRKFRPPHN*GKGRGG
Trigger: TCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCT...GAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GACTCTAACCAGACTTCCAACAGTGCTCTGGGCCCCTTAGTAAGTTCCCAGGGAGAGCTGTTGAAGGATTaGCCAGGCCGGTTCTTTTCT +
Preference number: 4 (lower is better)
Translates to: DSNQTSNSALGPLVSSQGELLKD*PGRFFS
Trigger: AGAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTC...TCCCTGGGAACTTACTAAGGGGCCCAGAGCACTGTTGGAAGTCTGGTTAGAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp CTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCGTCCATTGCCACATTaGTGTTTGTATTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: LNVQEMAARPSDFMKRRGRPLPH*CLYSSS
Trigger: AGAAGAAGAATACAAACAGCAATGTGGCAATGGACG...GCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR GCA 90 bp CGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGTGAGCCAAGTGGGGGAGTGTCCCTaGATCCTTCCACCAGGCCGA +
Preference number: 4 (lower is better)
Translates to: RFFSYLCCSRGNSSKVSQVGECP*ILPPGR
Trigger: TCGGCCTGGTGGAAGGATGCAGGGACACTCCCCCAC...TTGGCTCACCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000360415.7
CDS-3UTR GCA 90 bp GGAAAGTGGGGTGGTCAGAAAGGCAGCCAACACTGTTTCTGCTGCCACTGTCACAAGGCAACAACCACATaGCTGGGGCAACTATACTTT +
Preference number: 4 (lower is better)
Translates to: GKWGGQKGSQHCFCCHCHKATTT*LGQLYF
Trigger: AAAGTATAGTTGCCCCAGGCATGTGGTTGTTGCCTT...GTGACAGTGGCAGCAGAAACAGTGTTGGCTGCCTTTCTGACCACCCCACTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GCACAGAGACCTCCCCACAACTGGGGCAAAGGCCGTGGAGGAAATCTTTCAAGCACAATTTCAGGACTCTaGTGCCTGCATGGTGTTTTT +
Preference number: 4 (lower is better)
Translates to: AQRPPHNWGKGRGGNLSSTISGL*CLHGVF
Trigger: AAAAACACCATGCAGGCACCAGAGTCCTGAAATTGT...GCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp GGAAAGTGGGGTGGTCAGAAAGGCAGCCAACACTGTTTCTGCTGCCACTGTCACGGAGCTTCTCAGCTTTaGTCAACTTGTGGCTTTTCA +
Preference number: 4 (lower is better)
Translates to: GKWGGQKGSQHCFCCHCHGASQL*STCGFS
Trigger: TGAAAAGCCACAAGTTGACCAAAGCTGAGAAGCTCC...GTGACAGTGGCAGCAGAAACAGTGTTGGCTGCCTTTCTGACCACCCCACTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp TCAGCTCTCTGCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAATGCTGGTGACGGTGTaGAGAAGAGCTTCAATCTGC +
Preference number: 4 (lower is better)
Translates to: SALCPDNLSLFSPCFFSPMLVTV*RRASIC
Trigger: GCAGATTGAAGCTCTTCTCCACACCGTCACCAGCAT...TGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGCAGAGAGCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp TGCACAGAGACCTCCCCACAACTGGGGCAAAGGCCGTGGAGGAAATCTTTCAAGAAACTAATTAGGACATaGCCCACCAAAGGCGACACA +
Preference number: 4 (lower is better)
Translates to: CTETSPQLGQRPWRKSFKKLIRT*PTKGDT
Trigger: TGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTT...CTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp GACCTAAGGCAACAACCACATGCCTGGGGCAACTATACTTTCCAAATCCTGAATGTGCCACTGCACTCCTaGGCAACACAGCGAGACTGT +
Preference number: 4 (lower is better)
Translates to: DLRQQPHAWGNYTFQILNVPLHS*ATQRDC
Trigger: ACAGTCTCGCTGTGTTGCCCAGGAGTGCAGTGGCAC...ATTCAGGATTTGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAAAAATCCGGTGGTTCAGCAGCTaGAGCTTCTCAGCTACTTCC +
Preference number: 4 (lower is better)
Translates to: VMYPTNHKARPAGMRIKIRWFSS*SFSATS
Trigger: GGAAGTAGCTGAGAAGCTCCAGCTGCTGAACCACCG...GATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000398684.6
CDS-3UTR TCA 90 bp GCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAAGGCACAAATGAAATTCCTCTAAGGTaGGCCAAGGTCAGTGGCTCA +
Preference number: 4 (lower is better)
Translates to: ALTTSACFHHVSSPQGTNEIPLR*AKVSGS
Trigger: TGAGCCACTGACCTTGGCTCACCTTAGAGGAATTTC...ATTTGTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR TCA 90 bp GAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCTCTAAACAGGGAAGAAAGTaGATGTGGAAAATCCGATTT +
Preference number: 4 (lower is better)
Translates to: EMAARPSDFMKRRGQLCSKQGRK*MWKIRF
Trigger: AAATCGGATTTTCCACATTCACTTTCTTCCCTGTTT...AGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp CCAGCAGAGAAAAGGGGCTCTAGAGCTGTTGAAGGATTGGCCAGGCCGGTTCTTAGAGAGAGACAACAATaGGACAGATTGGCACATGTA +
Preference number: 4 (lower is better)
Translates to: PAEKRGSRAVEGLARPVLRERQQ*DRLAHV
Trigger: TACATGTGCCAATCTGTCTCATTGTTGTCTCTCTCT...AAGAACCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCCTTTTCTCTGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp GAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCGGCACCAGAATCGCTTaGATCTGGGAGGCAGAGGTT +
Preference number: 4 (lower is better)
Translates to: EGLARPVLFLSLLFSRKFGTRIA*IWEAEV
Trigger: AACCTCTGCCTCCCAGATTCAAGCGATTCTGGTGCC...GAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp GCACAGAGACCTCCCCACAACTGGGGCAAAGGCCGTGGAGGAAATCTTTCAAGCCGTCCATTGCCACATTaGTGTTTGTATTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: AQRPPHNWGKGRGGNLSSRPLPH*CLYSSS
Trigger: AGAAGAAGAATACAAACAGCAATGTGGCAATGGACG...GCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR GCA 90 bp GCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAAGGCACAAATAGCTGTGCTCTTCTATaGTGGGTCCTCTTCGTCCAT +
Preference number: 4 (lower is better)
Translates to: ALTTSACFHHVSSPQGTNSCALL*WVLFVH
Trigger: ATGGACGAAGAGGACCCAGCATAGAAGAGCACAGCT...ATTTGTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR GCA 90 bp AATCCTCTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCCACAAAGCCAGGCCTaGTGGGATGAGGATAAAAAT +
Preference number: 4 (lower is better)
Translates to: NPLNVQEMAARPSDFMKRPQSQA*WDEDKN
Trigger: ATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGG...GCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR GCA 90 bp ATATTCGCAGGACCTAAGGCAACAACCACATGCCTGGGGCAACTATACTTTCCACCAGACTTCCAACAGTaGTCTGGGCCCCTTAGTAAG +
Preference number: 4 (lower is better)
Translates to: IFAGPKATTTCLGQLYFPPDFQQ*SGPLSK
Trigger: CTTACTAAGGGGCCCAGAGCACTGTTGGAAGTCTGG...TGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTCCTGCGAATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp GTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAAAAATCCCAGACTTCCAACAGTaGTCTGGGCCCCTTAGTAAG +
Preference number: 4 (lower is better)
Translates to: VMYPTNHKARPAGMRIKIPDFQQ*SGPLSK
Trigger: CTTACTAAGGGGCCCAGAGCACTGTTGGAAGTCTGG...GATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR GCA 90 bp TTGAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCGGCCAGGCTGGAGTaGAATGCACGATCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: LKDWPGRFFSYLCCSRGNSARLE*NARSGS
Trigger: TGAGCCAGATCGTGCATTGCACTCCAGCCTGGCCGA...ATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GCAGTGATCTGGTCCCTAACATTTAGCCTAAACAGTGAGCTGGTAAACAAAGCCCGGTGGTTCAGCAGCTaGAGCTTCTCAGCTTTGGTC +
Preference number: 4 (lower is better)
Translates to: AVIWSLTFSLNSELVNKARWFSS*SFSALV
Trigger: GACCAAAGCTGAGAAGCTCCAGCTGCTGAACCACCG...GGCTTTGTTTACCAGCTCACTGTTTAGGCTAAATGTTAGGGACCAGATCACTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAAGGCACAAATATGCTGGTGACGGTGTaGAGAAGAGCTTCAATCTGC +
Preference number: 4 (lower is better)
Translates to: ALTTSACFHHVSSPQGTNMLVTV*RRASIC
Trigger: GCAGATTGAAGCTCTTCTCCACACCGTCACCAGCAT...ATTTGTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp GGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGTCAACGTCCAGGAAATaGCTGCCAGGCCTTCTGACT +
Preference number: 4 (lower is better)
Translates to: GQAGSFLISVVLEEIPLRSTSRK*LPGLLT
Trigger: AGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGA...CCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAAAAATCTCAACGTCCAGGAAATaGCTGCCAGGCCTTCTGACT +
Preference number: 4 (lower is better)
Translates to: VMYPTNHKARPAGMRIKISTSRK*LPGLLT
Trigger: AGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGA...GATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR CCA 90 bp GTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAAAAATCCTGGGGCAAAGGCCGTaGAGGAAATCTTTCAAGCAC +
Preference number: 4 (lower is better)
Translates to: VMYPTNHKARPAGMRIKILGQRP*RKSFKH
Trigger: GTGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAG...GATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp CCAGCAGAGAAAAGGGGCTCTAGAGCTGTTGAAGGATTGGCCAGGCCGGTTCTTTCAACTGCAGTGATCTaGTCCCTAACATTTAGCCTA +
Preference number: 4 (lower is better)
Translates to: PAEKRGSRAVEGLARPVLSTAVI*SLTFSL
Trigger: TAGGCTAAATGTTAGGGACCAGATCACTGCAGTTGA...AAGAACCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCCTTTTCTCTGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp ATTTTTGTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAGGCCTCCCGAGTAGCTaGGATTACAGGAATGTGCCA +
Preference number: 4 (lower is better)
Translates to: IFVMYPTNHKARPAGMRIGLPSS*DYRNVP
Trigger: TGGCACATTCCTGTAATCCCAGCTACTCGGGAGGCC...TATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCACAAAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp CTCTGCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAAGGCACACATTACGACTAGCCTaGCCAATATGGCAAAACCCT +
Preference number: 4 (lower is better)
Translates to: LCPDNLSLFSPCFFSPRHTLRLA*PIWQNP
Trigger: AGGGTTTTGCCATATTGGCCAGGCTAGTCGTAATGT...GTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGCAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
3UTR CAA 72 bp CTCTTCTATGCTGGGTCCTCTTCGTCCATTGCCACATaGCTGTTTGTATTCTTCTTCTGCTCAGCCTCTGGC +
Preference number: 4 (lower is better)
Translates to: LFYAGSSSSIAT*LFVFFFCSASG
Trigger: GCCAGAGGCTGAGCAGAAGAAGAATACAAACAGCAATGTGGCAATGGACGAAGAGGACCCAGCATAGAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360415.7
CDS-3UTR GCA 90 bp ACTGCAGTGATCTGGTCCCTAACATTTAGCCTAAACAGTGAGCTGGTAAACAAACTCGTCGCCCCTAGCTaGCAGCAGACAAAGAACCTC +
Preference number: 4 (lower is better)
Translates to: TAVIWSLTFSLNSELVNKLVAPS*QQTKNL
Trigger: GAGGTTCTTTGTCTGCTGGCAGCTAGGGGCGACGAG...TTTGTTTACCAGCTCACTGTTTAGGCTAAATGTTAGGGACCAGATCACTGCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp GTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAAAAATCAGCTGTGCTCTTCTATaGTGGGTCCTCTTCGTCCAT +
Preference number: 4 (lower is better)
Translates to: VMYPTNHKARPAGMRIKISCALL*WVLFVH
Trigger: ATGGACGAAGAGGACCCAGCATAGAAGAGCACAGCT...GATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR GCA 90 bp GTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAAAAATCTCACTAAGCCTGGAGTaGCCGTTTTCAACTGCAGTG +
Preference number: 4 (lower is better)
Translates to: VMYPTNHKARPAGMRIKISLSLE*PFSTAV
Trigger: CACTGCAGTTGAAAACGGGCACTCCAGGCTTAGTGA...GATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp GGGCAGGAGGGTTGGAAGAGAAGTAATCCAATTAGCATTGAAAATAAGAGCGCCTTGCCCAGGCTGGAGTaGAATGGTGCAATCTTGGCT +
Preference number: 4 (lower is better)
Translates to: GQEGWKRSNPISIENKSALPRLE*NGAILA
Trigger: AGCCAAGATTGCACCATTGCACTCCAGCCTGGGCAA...GGCGCTCTTATTTTCAATGCTAATTGGATTACTTCTCTTCCAACCCTCCTGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp CGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGTGAGCCAATCGGCCAGGCTGGAGTaGAATGCACGATCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: RFFSYLCCSRGNSSKVSQSARLE*NARSGS
Trigger: TGAGCCAGATCGTGCATTGCACTCCAGCCTGGCCGA...TTGGCTCACCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp ATGAAACTAATTAGGACATGGCCCACCAAAGGCGACACAAGCATTTTCCCCGCTATGCTGGTGACGGTGTaGAGAAGAGCTTCAATCTGC +
Preference number: 4 (lower is better)
Translates to: MKLIRTWPTKGDTSIFPAMLVTV*RRASIC
Trigger: GCAGATTGAAGCTCTTCTCCACACCGTCACCAGCAT...AGCGGGGAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp GTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAAAAATCATGCTGGTGACGGTGTaGAGAAGAGCTTCAATCTGC +
Preference number: 4 (lower is better)
Translates to: VMYPTNHKARPAGMRIKIMLVTV*RRASIC
Trigger: GCAGATTGAAGCTCTTCTCCACACCGTCACCAGCAT...GATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR TCA 90 bp AAAGGAACAAACAATTTGACTGTTGTGCAAATGAGGCTTACCTGGTCTGAATATCATCCTTCACTTCCATaGCGTCCCGCCTCGTCGCCC +
Preference number: 4 (lower is better)
Translates to: KGTNNLTVVQMRLTWSEYHPSLP*RPASSP
Trigger: GGGCGACGAGGCGGGACGTCATGGAAGTGAAGGATG...ATATTCAGACCAGGTAAGCCTCATTTGCACAACAGTCAAATTGTTTGTTCCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp ACTGCAGTGATCTGGTCCCTAACATTTAGCCTAAACAGTGAGCTGGTAAACAAACAATCTGCTCCTCCGTaGGCCGCTCTTCACTCTCTT +
Preference number: 4 (lower is better)
Translates to: TAVIWSLTFSLNSELVNKQSAPP*AALHSL
Trigger: AAGAGAGTGAAGAGCGGCTCACGGAGGAGCAGATTG...TTTGTTTACCAGCTCACTGTTTAGGCTAAATGTTAGGGACCAGATCACTGCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp GAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCGAAATTCCTCTAAGGTaGGCCAAGGTCAGTGGCTCA +
Preference number: 4 (lower is better)
Translates to: EGLARPVLFLSLLFSRKFEIPLR*AKVSGS
Trigger: TGAGCCACTGACCTTGGCTCACCTTAGAGGAATTTC...GAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp AATCCTCTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCAGAGAGAGACAACAATaGGACAGATTGGCACATGTA +
Preference number: 4 (lower is better)
Translates to: NPLNVQEMAARPSDFMKRRERQQ*DRLAHV
Trigger: TACATGTGCCAATCTGTCTCATTGTTGTCTCTCTCT...GCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp TTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGTGAGCCAAGGTCTCGTCGCCCCTAGCTaGCAGCAGACAAAGAACCTC +
Preference number: 4 (lower is better)
Translates to: FFSYLCCSRGNSSKVSQGLVAPS*QQTKNL
Trigger: GAGGTTCTTTGTCTGCTGGCAGCTAGGGGCGACGAG...ACCTTGGCTCACCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp GATGAGGATAAAAATCAAATAAACAATCCTCTCAACGTCCAGGAAATGGCTGCCCTCAGCCTCTGGCTCTaGAGGCAGAATGCTGGTGAC +
Preference number: 4 (lower is better)
Translates to: DEDKNQINNPLNVQEMAALSLWL*RQNAGD
Trigger: GTCACCAGCATTCTGCCTGCAGAGCCAGAGGCTGAG...GGCAGCCATTTCCTGGACGTTGAGAGGATTGTTTATTTGATTTTTATCCTCATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR GCA 90 bp GAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCAGCTGTGCTCTTCTATaGTGGGTCCTCTTCGTCCAT +
Preference number: 4 (lower is better)
Translates to: EGLARPVLFLSLLFSRKFSCALL*WVLFVH
Trigger: ATGGACGAAGAGGACCCAGCATAGAAGAGCACAGCT...GAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp GTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAAAAATCCCACAAAGCCAGGCCTaGTGGGATGAGGATAAAAAT +
Preference number: 4 (lower is better)
Translates to: VMYPTNHKARPAGMRIKIPQSQA*WDEDKN
Trigger: ATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGG...GATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR GCA 90 bp GGACCTAAGGCAACAACCACATGCCTGGGGCAACTATACTTTCCAAATCCTGAACCACAAAGCCAGGCCTaGTGGGATGAGGATAAAAAT +
Preference number: 4 (lower is better)
Translates to: GPKATTTCLGQLYFPNPEPQSQA*WDEDKN
Trigger: ATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGG...TTCAGGATTTGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp ATTTTTGTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATATGTGCTCTTCTATGCTaGGTCCTCTTCGTCCATTGC +
Preference number: 4 (lower is better)
Translates to: IFVMYPTNHKARPAGMRICALLC*VLFVHC
Trigger: GCAATGGACGAAGAGGACCCAGCATAGAAGAGCACA...TATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCACAAAAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR CCA 90 bp AATCCTCTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCAAATGAGGCTTACCTaGTCTGAATATGAAGCACCT +
Preference number: 4 (lower is better)
Translates to: NPLNVQEMAARPSDFMKRQMRLT*SEYEAP
Trigger: AGGTGCTTCATATTCAGACCAGGTAAGCCTCATTTG...GCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GGGGCTCTAGAGCTGTTGAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTCAAATGAGGCTTACCTaGTCTGAATATGAAGCACCT +
Preference number: 4 (lower is better)
Translates to: GALELLKDWPGRFFSYLCQMRLT*SEYEAP
Trigger: AGGTGCTTCATATTCAGACCAGGTAAGCCTCATTTG...ACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp TGTGGAAAATCCGATTTTCAGCAATATTCGCAGGACCTAAGGCAACAACCACATGGCCTCCCGAGTAGCTaGGATTACAGGAATGTGCCA +
Preference number: 4 (lower is better)
Translates to: CGKSDFQQYSQDLRQQPHGLPSS*DYRNVP
Trigger: TGGCACATTCCTGTAATCCCAGCTACTCGGGAGGCC...ATGTGGTTGTTGCCTTAGGTCCTGCGAATATTGCTGAAAATCGGATTTTCCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAAGGCACAAATCAACAACCACATGCCTaGGGCAACTATACTTTCCAA +
Preference number: 4 (lower is better)
Translates to: ALTTSACFHHVSSPQGTNQQPHA*GNYTFQ
Trigger: TTGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTG...ATTTGTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp CGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGTGAGCCAAAGCCTCCCGAGTAGCTaGGATCACAGGCATGCAACA +
Preference number: 4 (lower is better)
Translates to: RFFSYLCCSRGNSSKVSQSLPSS*DHRHAT
Trigger: TGTTGCATGCCTGTGATCCCAGCTACTCGGGAGGCT...TTGGCTCACCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GGTGTGGGCCGCTACACCTGGCCCCAATCTGGTACTTTCAATGTTGCCTATAAAAACAATGAGACAGATTaGCACATGTATGCCCTGAGA +
Preference number: 4 (lower is better)
Translates to: GVGRYTWPQSGTFNVAYKNNETD*HMYALR
Trigger: TCTCAGGGCATACATGTGCCAATCTGTCTCATTGTT...TTTATAGGCAACATTGAAAGTACCAGATTGGGGCCAGGTGTAGCGGCCCACACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp ATTTTTGTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAGTTTTTCCATGTTGGTaGGGCTGGTCTCAAACTCCT +
Preference number: 4 (lower is better)
Translates to: IFVMYPTNHKARPAGMRIVFPCW*GWSQTP
Trigger: AGGAGTTTGAGACCAGCCTCACCAACATGGAAAAAC...TATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCACAAAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp GGTGTGGGCCGCTACACCTGGCCCCAATCTGGTACTTTCAATGTTGCCTATAAACGTCCATTGCCACATTaGTGTTTGTATTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: GVGRYTWPQSGTFNVAYKRPLPH*CLYSSS
Trigger: AGAAGAAGAATACAAACAGCAATGTGGCAATGGACG...TTTATAGGCAACATTGAAAGTACCAGATTGGGGCCAGGTGTAGCGGCCCACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp TTGAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTGTGCTCTTCTATGCTaGGTCCTCTTCGTCCATTGC +
Preference number: 4 (lower is better)
Translates to: LKDWPGRFFSYLCCSRGNCALLC*VLFVHC
Trigger: GCAATGGACGAAGAGGACCCAGCATAGAAGAGCACA...ATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp TTGAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATGAGCTGTTGAAGGATTaGCCAGGCCGGTTCTTTTCT +
Preference number: 4 (lower is better)
Translates to: LKDWPGRFFSYLCCSRGNELLKD*PGRFFS
Trigger: AGAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTC...ATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCGACGGGCAGGAGGGTTaGAAGAGAAGTAATCCAATT +
Preference number: 4 (lower is better)
Translates to: EGLARPVLFLSLLFSRKFDGQEG*KRSNPI
Trigger: AATTGGATTACTTCTCTTCCAACCCTCCTGCCCGTC...GAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GACCTAAGGCAACAACCACATGCCTGGGGCAACTATACTTTCCAAATCCTGAATCACCTGGCCCCAATCTaGTACTTTCAATGTTGCCTA +
Preference number: 4 (lower is better)
Translates to: DLRQQPHAWGNYTFQILNHLAPI*YFQCCL
Trigger: TAGGCAACATTGAAAGTACCAGATTGGGGCCAGGTG...ATTCAGGATTTGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp ATGAAACTAATTAGGACATGGCCCACCAAAGGCGACACAAGCATTTTCCCCGCTACATTACGACTAGCCTaGCCAATATGGCAAAACCCT +
Preference number: 4 (lower is better)
Translates to: MKLIRTWPTKGDTSIFPATLRLA*PIWQNP
Trigger: AGGGTTTTGCCATATTGGCCAGGCTAGTCGTAATGT...AGCGGGGAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp ACTGCAGTGATCTGGTCCCTAACATTTAGCCTAAACAGTGAGCTGGTAAACAAAGAAATTCCTCTAAGGTaGGCCAAGGTCAGTGGCTCA +
Preference number: 4 (lower is better)
Translates to: TAVIWSLTFSLNSELVNKEIPLR*AKVSGS
Trigger: TGAGCCACTGACCTTGGCTCACCTTAGAGGAATTTC...TTTGTTTACCAGCTCACTGTTTAGGCTAAATGTTAGGGACCAGATCACTGCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp AAGCAGATGAAACTAATTAGGACATGGCCCACCAAAGGCGACACAAGCATTTTCGTTTTTCCATGTTGGTaGGGCTGGTCTCAAACTCCT +
Preference number: 4 (lower is better)
Translates to: KQMKLIRTWPTKGDTSIFVFPCW*GWSQTP
Trigger: AGGAGTTTGAGACCAGCCTCACCAACATGGAAAAAC...GAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCATCTGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp AATCCTCTCAACGTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCAAACAGGGAAGAAAGTaGATGTGGAAAATCCGATTT +
Preference number: 4 (lower is better)
Translates to: NPLNVQEMAARPSDFMKRKQGRK*MWKIRF
Trigger: AAATCGGATTTTCCACATTCACTTTCTTCCCTGTTT...GCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp GGGCAGGAGGGTTGGAAGAGAAGTAATCCAATTAGCATTGAAAATAAGAGCGCCGGCACATGTATGCCCTaGGAAATAAATCAACAGCTC +
Preference number: 4 (lower is better)
Translates to: GQEGWKRSNPISIENKSAGTCMP*EINQQL
Trigger: GAGCTGTTGATTTATTTCTCAGGGCATACATGTGCC...GGCGCTCTTATTTTCAATGCTAATTGGATTACTTCTCTTCCAACCCTCCTGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR TCA 90 bp GAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCGGCACATGTATGCCCTaGGAAATAAATCAACAGCTC +
Preference number: 4 (lower is better)
Translates to: EGLARPVLFLSLLFSRKFGTCMP*EINQQL
Trigger: GAGCTGTTGATTTATTTCTCAGGGCATACATGTGCC...GAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp TTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGTGAGCCAAGGTCCAGACTTCCAACAGTaGTCTGGGCCCCTTAGTAAG +
Preference number: 4 (lower is better)
Translates to: FFSYLCCSRGNSSKVSQGPDFQQ*SGPLSK
Trigger: CTTACTAAGGGGCCCAGAGCACTGTTGGAAGTCTGG...ACCTTGGCTCACCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR GCA 90 bp TGTGGAAAATCCGATTTTCAGCAATATTCGCAGGACCTAAGGCAACAACCACATTCACTAAGCCTGGAGTaGCCGTTTTCAACTGCAGTG +
Preference number: 4 (lower is better)
Translates to: CGKSDFQQYSQDLRQQPHSLSLE*PFSTAV
Trigger: CACTGCAGTTGAAAACGGGCACTCCAGGCTTAGTGA...ATGTGGTTGTTGCCTTAGGTCCTGCGAATATTGCTGAAAATCGGATTTTCCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp CTCTTCTATGCTGGGTCCTCTTCGTCCATTGCCACATTGCTGTTTGTATTCTTCGGAGCTTCTCAGCTTTaGTCAACTTGTGGCTTTTCA +
Preference number: 4 (lower is better)
Translates to: LFYAGSSSSIATLLFVFFGASQL*STCGFS
Trigger: TGAAAAGCCACAAGTTGACCAAAGCTGAGAAGCTCC...GAAGAATACAAACAGCAATGTGGCAATGGACGAAGAGGACCCAGCATAGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000360415.7
CDS-3UTR CCA 90 bp GATGAGGATAAAAATCAAATAAACAATCCTCTCAACGTCCAGGAAATGGCTGCCTCAACGTCCAGGAAATaGCTGCCAGGCCTTCTGACT +
Preference number: 4 (lower is better)
Translates to: DEDKNQINNPLNVQEMAASTSRK*LPGLLT
Trigger: AGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGA...GGCAGCCATTTCCTGGACGTTGAGAGGATTGTTTATTTGATTTTTATCCTCATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR CCA 90 bp ATTTTTGTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATACAAAGCCAGGCCTGCTaGGATGAGGATAAAAATCAA +
Preference number: 4 (lower is better)
Translates to: IFVMYPTNHKARPAGMRIQSQAC*DEDKNQ
Trigger: TTGATTTTTATCCTCATCCCAGCAGGCCTGGCTTTG...TATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCACAAAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR CCA 90 bp GATGAGGATAAAAATCAAATAAACAATCCTCTCAACGTCCAGGAAATGGCTGCCCTGGGGCAAAGGCCGTaGAGGAAATCTTTCAAGCAC +
Preference number: 4 (lower is better)
Translates to: DEDKNQINNPLNVQEMAALGQRP*RKSFKH
Trigger: GTGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAG...GGCAGCCATTTCCTGGACGTTGAGAGGATTGTTTATTTGATTTTTATCCTCATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp ATGAAACTAATTAGGACATGGCCCACCAAAGGCGACACAAGCATTTTCCCCGCTCAAATGAGGCTTACCTaGTCTGAATATGAAGCACCT +
Preference number: 4 (lower is better)
Translates to: MKLIRTWPTKGDTSIFPAQMRLT*SEYEAP
Trigger: AGGTGCTTCATATTCAGACCAGGTAAGCCTCATTTG...AGCGGGGAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp GATGAGGATAAAAATCAAATAAACAATCCTCTCAACGTCCAGGAAATGGCTGCCTGTGCTCTTCTATGCTaGGTCCTCTTCGTCCATTGC +
Preference number: 4 (lower is better)
Translates to: DEDKNQINNPLNVQEMAACALLC*VLFVHC
Trigger: GCAATGGACGAAGAGGACCCAGCATAGAAGAGCACA...GGCAGCCATTTCCTGGACGTTGAGAGGATTGTTTATTTGATTTTTATCCTCATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR CCA 90 bp AAGCAGATGAAACTAATTAGGACATGGCCCACCAAAGGCGACACAAGCATTTTCCAAAGCCAGGCCTGCTaGGATGAGGATAAAAATCAA +
Preference number: 4 (lower is better)
Translates to: KQMKLIRTWPTKGDTSIFQSQAC*DEDKNQ
Trigger: TTGATTTTTATCCTCATCCCAGCAGGCCTGGCTTTG...GAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCATCTGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp AAGCAGATGAAACTAATTAGGACATGGCCCACCAAAGGCGACACAAGCATTTTCAAACTAATTAGGACATaGCCCACCAAAGGCGACACA +
Preference number: 4 (lower is better)
Translates to: KQMKLIRTWPTKGDTSIFKLIRT*PTKGDT
Trigger: TGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTT...GAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTTCATCTGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp CTCTTCTATGCTGGGTCCTCTTCGTCCATTGCCACATTGCTGTTTGTATTCTTCTCAACTGCAGTGATCTaGTCCCTAACATTTAGCCTA +
Preference number: 4 (lower is better)
Translates to: LFYAGSSSSIATLLFVFFSTAVI*SLTFSL
Trigger: TAGGCTAAATGTTAGGGACCAGATCACTGCAGTTGA...GAAGAATACAAACAGCAATGTGGCAATGGACGAAGAGGACCCAGCATAGAAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000360415.7
CDS-3UTR CCA 90 bp GCAGTGATCTGGTCCCTAACATTTAGCCTAAACAGTGAGCTGGTAAACAAAGCCAACAATGAGACAGATTaGCACATGTATGCCCTGAGA +
Preference number: 4 (lower is better)
Translates to: AVIWSLTFSLNSELVNKANNETD*HMYALR
Trigger: TCTCAGGGCATACATGTGCCAATCTGTCTCATTGTT...GGCTTTGTTTACCAGCTCACTGTTTAGGCTAAATGTTAGGGACCAGATCACTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp CGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGTGAGCCAACAAAGCCAGGCCTGCTaGGATGAGGATAAAAATCAA +
Preference number: 4 (lower is better)
Translates to: RFFSYLCCSRGNSSKVSQQSQAC*DEDKNQ
Trigger: TTGATTTTTATCCTCATCCCAGCAGGCCTGGCTTTG...TTGGCTCACCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp CGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGTGAGCCAACAACAACCACATGCCTaGGGCAACTATACTTTCCAA +
Preference number: 4 (lower is better)
Translates to: RFFSYLCCSRGNSSKVSQQQPHA*GNYTFQ
Trigger: TTGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTG...TTGGCTCACCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp TATTCAGTGTTAAAAAGAGACATTACGACTAGCCTGGCCAATATGGCAAAACCCCACCTGGCCCCAATCTaGTACTTTCAATGTTGCCTA +
Preference number: 4 (lower is better)
Translates to: YSVLKRDITTSLANMAKPHLAPI*YFQCCL
Trigger: TAGGCAACATTGAAAGTACCAGATTGGGGCCAGGTG...GGGTTTTGCCATATTGGCCAGGCTAGTCGTAATGTCTCTTTTTAACACTGAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CCA 90 bp CGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGTGAGCCAAACAATTTCAGGACTCTaGTGCCTGCATGGTGTTTTT +
Preference number: 4 (lower is better)
Translates to: RFFSYLCCSRGNSSKVSQTISGL*CLHGVF
Trigger: AAAAACACCATGCAGGCACCAGAGTCCTGAAATTGT...TTGGCTCACCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CCA 90 bp TATTCAGTGTTAAAAAGAGACATTACGACTAGCCTGGCCAATATGGCAAAACCCAAACTAATTAGGACATaGCCCACCAAAGGCGACACA +
Preference number: 4 (lower is better)
Translates to: YSVLKRDITTSLANMAKPKLIRT*PTKGDT
Trigger: TGTGTCGCCTTTGGTGGGCCATGTCCTAATTAGTTT...GGGTTTTGCCATATTGGCCAGGCTAGTCGTAATGTCTCTTTTTAACACTGAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR GCA 90 bp ACTGCAGTGATCTGGTCCCTAACATTTAGCCTAAACAGTGAGCTGGTAAACAAACGTCCATTGCCACATTaGTGTTTGTATTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: TAVIWSLTFSLNSELVNKRPLPH*CLYSSS
Trigger: AGAAGAAGAATACAAACAGCAATGTGGCAATGGACG...TTTGTTTACCAGCTCACTGTTTAGGCTAAATGTTAGGGACCAGATCACTGCAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
3UTR CAA 72 bp GGCAGGAGGGTTGGAAGAGAAGTAATCCAATTAGCATaGAAAATAAGAGCGCCAATTTGGAAAATCGAATGT +
Preference number: 4 (lower is better)
Translates to: GRRVGREVIQLA*KIRAPIWKIEC
Trigger: ACATTCGATTTTCCAAATTGGCGCTCTTATTTTCAATGCTAATTGGATTACTTCTCTTCCAACCCTCCTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS GCA 90 bp TTGGCATCCTTCACTTCCATGACGTCCCGCCTCGTCGCCCCTAGCTaGCAGCAGACAAAGAACCTCACACTTCACAGCTGTCTCCGCCGC +
Preference number: 5 (lower is better)
Translates to: LASFTSMTSRLVAPS*QQTKNLTLHSCLRR
Trigger: GCGGCGGAGACAGCTGTGAAGTGTGAGGTTCTTTGTCTGCTGGCAGCTAGGGGCGACGAGGCGGGACGTCATGGAAGTGAAGGATGCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000486848.1
CDS GCA 90 bp AGCTTCTCAGCTACTTCCATGACGTCCCGCCTCGTCGCCCCTAGCTaGCAGCAGACAAAGAACCTCACACTTCACAGCTGTCTCCGCCGC +
Preference number: 5 (lower is better)
Translates to: SFSATSMTSRLVAPS*QQTKNLTLHSCLRR
Trigger: GCGGCGGAGACAGCTGTGAAGTGTGAGGTTCTTTGTCTGCTGGCAGCTAGGGGCGACGAGGCGGGACGTCATGGAAGTAGCTGAGAAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000398684.6
CDS-3UTR CAA 90 bp GTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGAGAGCTGTTGAAGGATaGGCCAGGCCGGTTCTTTTC +
Preference number: 5 (lower is better)
Translates to: VQEMAARPSDFMKRRGQLRAVEG*ARPVLF
Trigger: GAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTCT...CAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CAA 90 bp GACTCTAACCAGACTTCCAACAGTGCTCTGGGCCCCTTAGTAAGTTCCCAGGGAGGGGCTCTAGAGCTGTaGAAGGATTGGCCAGGCCGG +
Preference number: 5 (lower is better)
Translates to: DSNQTSNSALGPLVSSQGGALEL*KDWPGR
Trigger: CCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCC...TCCCTGGGAACTTACTAAGGGGCCCAGAGCACTGTTGGAAGTCTGGTTAGAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CAA 90 bp TCAGCTCTCTGCCCTGACAACCTCAGCCTGTTTTCACCATGTTTCTTCTCCCCAGGGGCTCTAGAGCTGTaGAAGGATTGGCCAGGCCGG +
Preference number: 5 (lower is better)
Translates to: SALCPDNLSLFSPCFFSPGALEL*KDWPGR
Trigger: CCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCC...TGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGCAGAGAGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CAA 90 bp GTCCAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGGGTCCTCTTCGTCCATaGCCACATTGCTGTTTGTAT +
Preference number: 5 (lower is better)
Translates to: VQEMAARPSDFMKRRGQLGPLRP*PHCCLY
Trigger: ATACAAACAGCAATGTGGCAATGGACGAAGAGGACC...CAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR CAA 90 bp GCACAGAGACCTCCCCACAACTGGGGCAAAGGCCGTGGAGGAAATCTTTCAAGCAGAGCTGTTGAAGGATaGGCCAGGCCGGTTCTTTTC +
Preference number: 5 (lower is better)
Translates to: AQRPPHNWGKGRGGNLSSRAVEG*ARPVLF
Trigger: GAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTCT...GCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CAA 90 bp GAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTGGGGTGGTTGGAGCTTCTCAGCTTaGGTCAACTTGTGGCTTTTC +
Preference number: 5 (lower is better)
Translates to: EYEAPALGCCLRAGKWGGWSFSA*VNLWLF
Trigger: GAAAAGCCACAAGTTGACCAAAGCTGAGAAGCTCCA...ACCACCCCACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CAA 90 bp GAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCTCTTGGAGCTTCTCAGCTTaGGTCAACTTGTGGCTTTTC +
Preference number: 5 (lower is better)
Translates to: EMAARPSDFMKRRGQLCSWSFSA*VNLWLF
Trigger: GAAAAGCCACAAGTTGACCAAAGCTGAGAAGCTCCA...AGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CAA 90 bp GAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCTCTGGTCCTCTTCGTCCATaGCCACATTGCTGTTTGTAT +
Preference number: 5 (lower is better)
Translates to: EMAARPSDFMKRRGQLCSGPLRP*PHCCLY
Trigger: ATACAAACAGCAATGTGGCAATGGACGAAGAGGACC...AGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000398684.6
ENST00000431089.6
CDS-3UTR CAA 90 bp TGCACAGAGACCTCCCCACAACTGGGGCAAAGGCCGTGGAGGAAATCTTTCAAGTGGAGCTTCTCAGCTTaGGTCAACTTGTGGCTTTTC +
Preference number: 5 (lower is better)
Translates to: CTETSPQLGQRPWRKSFKWSFSA*VNLWLF
Trigger: GAAAAGCCACAAGTTGACCAAAGCTGAGAAGCTCCA...CTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CAA 90 bp CCAGCAGAGAAAAGGGGCTCTAGAGCTGTTGAAGGATTGGCCAGGCCGGTTCTTGGTCCTCTTCGTCCATaGCCACATTGCTGTTTGTAT +
Preference number: 5 (lower is better)
Translates to: PAEKRGSRAVEGLARPVLGPLRP*PHCCLY
Trigger: ATACAAACAGCAATGTGGCAATGGACGAAGAGGACC...AAGAACCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCCTTTTCTCTGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CAA 90 bp GGGGCTCTAGAGCTGTTGAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTAGAGCTGTTGAAGGATaGGCCAGGCCGGTTCTTTTC +
Preference number: 5 (lower is better)
Translates to: GALELLKDWPGRFFSYLCRAVEG*ARPVLF
Trigger: GAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTCT...ACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS TCA 90 bp CAAGGTGGCCAGATTCTATTCCATGGCATTCCCCACAGCAATCTCTaGAATCCGGCAACTGGGACCACAGGGAGTTCCAGAAAGAAATCC +
Preference number: 5 (lower is better)
Translates to: QGGQILFHGIPHSNL*NPATGTTGSSRKKS
Trigger: GGATTTCTTTCTGGAACTCCCTGTGGTCCCAGTTGCCGGATTTCAGAGATTGCTGTGGGGAATGCCATGGAATAGAATCTGGCCACCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000492264.1
CDS-3UTR CAA 90 bp CCTGGTCTGAATATGAAGCACCTGCCCTGGGCTGCTGTCTCAGGGCAGGAAAGTTCGTCCATTGCCACATaGCTGTTTGTATTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: PGLNMKHLPWAAVSGQESSSIAT*LFVFFF
Trigger: GAAGAAGAATACAAACAGCAATGTGGCAATGGACGA...ACTTTCCTGCCCTGAGACAGCAGCCCAGGGCAGGTGCTTCATATTCAGACCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CAA 90 bp CAGGAAATGGCTGCCAGGCCTTCTGACTTCATGAAACGCCGGGGCCAGCTGTGCAATAAGAGCGCCAATTaGGAAAATCGAATGTCTATG +
Preference number: 5 (lower is better)
Translates to: QEMAARPSDFMKRRGQLCNKSAN*ENRMSM
Trigger: CATAGACATTCGATTTTCCAAATTGGCGCTCTTATT...GCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS CCA 90 bp ATCACAAACACCTTTCTCAGCTCAAGGTGGCCAGATTCTATTCCATaGCATTCCCCACAGCAATCTCTGAAATCCGGCAACTGGGACCAC +
Preference number: 5 (lower is better)
Translates to: ITNTFLSSRWPDSIP*HSPQQSLKSGNWDH
Trigger: GTGGTCCCAGTTGCCGGATTTCAGAGATTGCTGTGGGGAATGCCATGGAATAGAATCTGGCCACCTTGAGCTGAGAAAGGTGTTTGTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000492264.1
CDS CCA 90 bp AAAGCAGCAGGCAGGCAGTCAAGTTGCTTAACCCTGTTTGCTTGGTaGCATCAACCATCAATCACAAACACCTTTCTCAGCTCAAGGTGG +
Preference number: 5 (lower is better)
Translates to: KAAGRQSSCLTLFAW*HQPSITNTFLSSRW
Trigger: CCACCTTGAGCTGAGAAAGGTGTTTGTGATTGATGGTTGATGCCACCAAGCAAACAGGGTTAAGCAACTTGACTGCCTGCCTGCTGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000492264.1
CDS-3UTR CAA 90 bp ATATTCGCAGGACCTAAGGCAACAACCACATGCCTGGGGCAACTATACTTTCCAGGTCCTCTTCGTCCATaGCCACATTGCTGTTTGTAT +
Preference number: 5 (lower is better)
Translates to: IFAGPKATTTCLGQLYFPGPLRP*PHCCLY
Trigger: ATACAAACAGCAATGTGGCAATGGACGAAGAGGACC...TGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTCCTGCGAATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS CCA 90 bp TGGTGGCATCAACCATCAATCACAAACACCTTTCTCAGCTCAAGGTaGCCAGATTCTATTCCATGGCATTCCCCACAGCAATCTCTGAAA +
Preference number: 5 (lower is better)
Translates to: WWHQPSITNTFLSSR*PDSIPWHSPQQSLK
Trigger: TTTCAGAGATTGCTGTGGGGAATGCCATGGAATAGAATCTGGCCACCTTGAGCTGAGAAAGGTGTTTGTGATTGATGGTTGATGCCACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000492264.1
CDS CCA 90 bp TTAAAAGCAGCAGGCAGGCAGTCAAGTTGCTTAACCCTGTTTGCTTaGTGGCATCAACCATCAATCACAAACACCTTTCTCAGCTCAAGG +
Preference number: 5 (lower is better)
Translates to: LKAAGRQSSCLTLFA*WHQPSITNTFLSSR
Trigger: CCTTGAGCTGAGAAAGGTGTTTGTGATTGATGGTTGATGCCACCAAGCAAACAGGGTTAAGCAACTTGACTGCCTGCCTGCTGCTTTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000492264.1
CDS-3UTR CAA 90 bp AAGAAAAACCACCTAACATATTCAGTGTTAAAAAGAGACATTACGACTAGCCTGGGGGCTCTAGAGCTGTaGAAGGATTGGCCAGGCCGG +
Preference number: 5 (lower is better)
Translates to: KKNHLTYSVLKRDITTSLGALEL*KDWPGR
Trigger: CCGGCCTGGCCAATCCTTCAACAGCTCTAGAGCCCC...CAGGCTAGTCGTAATGTCTCTTTTTAACACTGAATATGTTAGGTGGTTTTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS GCA 90 bp CTTTTTAAAAGCAGCAGGCAGGCAGTCAAGTTGCTTAACCCTGTTTaGTTGGTGGCATCAACCATCAATCACAAACACCTTTCTCAGCTC +
Preference number: 5 (lower is better)
Translates to: LFKSSRQAVKLLNPV*LVASTINHKHLSQL
Trigger: GAGCTGAGAAAGGTGTTTGTGATTGATGGTTGATGCCACCAAGCAAACAGGGTTAAGCAACTTGACTGCCTGCCTGCTGCTTTTAAAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000492264.1
CDS-3UTR CAA 90 bp TTGAAGGATTGGCCAGGCCGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTGGAGCTTCTCAGCTTaGGTCAACTTGTGGCTTTTC +
Preference number: 5 (lower is better)
Translates to: LKDWPGRFFSYLCCSRGNWSFSA*VNLWLF
Trigger: GAAAAGCCACAAGTTGACCAAAGCTGAGAAGCTCCA...ATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCGGCCTGGCCAATCCTTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CAA 90 bp ACTGCAGTGATCTGGTCCCTAACATTTAGCCTAAACAGTGAGCTGGTAAACAAAGGTCCTCTTCGTCCATaGCCACATTGCTGTTTGTAT +
Preference number: 5 (lower is better)
Translates to: TAVIWSLTFSLNSELVNKGPLRP*PHCCLY
Trigger: ATACAAACAGCAATGTGGCAATGGACGAAGAGGACC...TTTGTTTACCAGCTCACTGTTTAGGCTAAATGTTAGGGACCAGATCACTGCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CAA 90 bp GTGATGTACCCAACTAACCACAAAGCCAGGCCTGCTGGGATGAGGATAAAAATCCTTTTCTTATCTCTGTaGTTCTCGAGGAAATTCCTC +
Preference number: 5 (lower is better)
Translates to: VMYPTNHKARPAGMRIKILFLSL*FSRKFL
Trigger: GAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAG...GATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CAA 90 bp ATATTCGCAGGACCTAAGGCAACAACCACATGCCTGGGGCAACTATACTTTCCACTTTTCTTATCTCTGTaGTTCTCGAGGAAATTCCTC +
Preference number: 5 (lower is better)
Translates to: IFAGPKATTTCLGQLYFPLFLSL*FSRKFL
Trigger: GAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAG...TGGAAAGTATAGTTGCCCCAGGCATGTGGTTGTTGCCTTAGGTCCTGCGAATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CAA 90 bp GGGCAGGAGGGTTGGAAGAGAAGTAATCCAATTAGCATTGAAAATAAGAGCGCCCTTTTCTTATCTCTGTaGTTCTCGAGGAAATTCCTC +
Preference number: 5 (lower is better)
Translates to: GQEGWKRSNPISIENKSALFLSL*FSRKFL
Trigger: GAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAG...GGCGCTCTTATTTTCAATGCTAATTGGATTACTTCTCTTCCAACCCTCCTGCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS-3UTR CAA 90 bp CGGTTCTTTTCTTATCTCTGTTGTTCTCGAGGAAATTCCTCTAAGGTGAGCCAACTTTTCTTATCTCTGTaGTTCTCGAGGAAATTCCTC +
Preference number: 5 (lower is better)
Translates to: RFFSYLCCSRGNSSKVSQLFLSL*FSRKFL
Trigger: GAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAG...TTGGCTCACCTTAGAGGAATTTCCTCGAGAACAACAGAGATAAGAAAAGAACCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000431089.6
CDS-3UTR CAA 90 bp TATTCAGTGTTAAAAAGAGACATTACGACTAGCCTGGCCAATATGGCAAAACCCAATAAGAGCGCCAATTaGGAAAATCGAATGTCTATG +
Preference number: 5 (lower is better)
Translates to: YSVLKRDITTSLANMAKPNKSAN*ENRMSM
Trigger: CATAGACATTCGATTTTCCAAATTGGCGCTCTTATT...GGGTTTTGCCATATTGGCCAGGCTAGTCGTAATGTCTCTTTTTAACACTGAATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000360415.7
ENST00000395326.8
CDS CCA 72 bp ATCTCCACAGCAGTCACAGGCCGGTGGTTCAGCAGCTaGAGCTTCTCAGCTACTTCCATGACGTCCCGCCTC +
Preference number: 6 (lower is better)
Translates to: ISTAVTGRWFSS*SFSATSMTSRL
Trigger: GAGGCGGGACGTCATGGAAGTAGCTGAGAAGCTCCAGCTGCTGAACCACCGGCCTGTGACTGCTGTGGAGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000398684.6
CDS GCA 72 bp GCTACTTCCATGACGTCCCGCCTCGTCGCCCCTAGCTaGCAGCAGACAAAGAACCTCACACTTCACAGCTGT +
Preference number: 6 (lower is better)
Translates to: ATSMTSRLVAPS*QQTKNLTLHSC
Trigger: ACAGCTGTGAAGTGTGAGGTTCTTTGTCTGCTGGCAGCTAGGGGCGACGAGGCGGGACGTCATGGAAGTAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000398684.6
CDS GCA 72 bp TTCACTTCCATGACGTCCCGCCTCGTCGCCCCTAGCTaGCAGCAGACAAAGAACCTCACACTTCACAGCTGT +
Preference number: 6 (lower is better)
Translates to: FTSMTSRLVAPS*QQTKNLTLHSC
Trigger: ACAGCTGTGAAGTGTGAGGTTCTTTGTCTGCTGGCAGCTAGGGGCGACGAGGCGGGACGTCATGGAAGTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338592.5
ENST00000360415.7
ENST00000395326.8
ENST00000486848.1
CDS CCA 72 bp TGGCATTCCCCACAGCAATCTCTGAAATCCGGCAACTaGGACCACAGGGAGTTCCAGAAAGAAATCCTGGCA +
Preference number: 6 (lower is better)
Translates to: WHSPQQSLKSGN*DHREFQKEILA
Trigger: TGCCAGGATTTCTTTCTGGAACTCCCTGTGGTCCCAGTTGCCGGATTTCAGAGATTGCTGTGGGGAATGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000492264.1
CDS TCA 72 bp CAGATTCTATTCCATGGCATTCCCCACAGCAATCTCTaGAATCCGGCAACTGGGACCACAGGGAGTTCCAGA +
Preference number: 6 (lower is better)
Translates to: QILFHGIPHSNL*NPATGTTGSSR
Trigger: TCTGGAACTCCCTGTGGTCCCAGTTGCCGGATTTCAGAGATTGCTGTGGGGAATGCCATGGAATAGAATCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000492264.1
CDS CCA 72 bp ACCTTTCTCAGCTCAAGGTGGCCAGATTCTATTCCATaGCATTCCCCACAGCAATCTCTGAAATCCGGCAAC +
Preference number: 6 (lower is better)
Translates to: TFLSSRWPDSIP*HSPQQSLKSGN
Trigger: GTTGCCGGATTTCAGAGATTGCTGTGGGGAATGCCATGGAATAGAATCTGGCCACCTTGAGCTGAGAAAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000492264.1
CDS GCA 72 bp AGCAGCAGGCAGGCAGTCAAGTTGCTTAACCCTGTTTaGTTGGTGGCATCAACCATCAATCACAAACACCTT +
Preference number: 6 (lower is better)
Translates to: SSRQAVKLLNPV*LVASTINHKHL
Trigger: AAGGTGTTTGTGATTGATGGTTGATGCCACCAAGCAAACAGGGTTAAGCAACTTGACTGCCTGCCTGCTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000492264.1
CDS CCA 72 bp GGCAGGCAGTCAAGTTGCTTAACCCTGTTTGCTTGGTaGCATCAACCATCAATCACAAACACCTTTCTCAGC +
Preference number: 6 (lower is better)
Translates to: GRQSSCLTLFAW*HQPSITNTFLS
Trigger: GCTGAGAAAGGTGTTTGTGATTGATGGTTGATGCCACCAAGCAAACAGGGTTAAGCAACTTGACTGCCTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000492264.1
CDS CCA 72 bp GCAGGCAGGCAGTCAAGTTGCTTAACCCTGTTTGCTTaGTGGCATCAACCATCAATCACAAACACCTTTCTC +
Preference number: 6 (lower is better)
Translates to: AGRQSSCLTLFA*WHQPSITNTFL
Trigger: GAGAAAGGTGTTTGTGATTGATGGTTGATGCCACCAAGCAAACAGGGTTAAGCAACTTGACTGCCTGCCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000492264.1
CDS CCA 72 bp CAACCATCAATCACAAACACCTTTCTCAGCTCAAGGTaGCCAGATTCTATTCCATGGCATTCCCCACAGCAA +
Preference number: 6 (lower is better)
Translates to: QPSITNTFLSSR*PDSIPWHSPQQ
Trigger: TTGCTGTGGGGAATGCCATGGAATAGAATCTGGCCACCTTGAGCTGAGAAAGGTGTTTGTGATTGATGGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000492264.1
CDS CAA 72 bp AGCAGGCAGGCAGTCAAGTTGCTTAACCCTGTTTGCTaGGTGGCATCAACCATCAATCACAAACACCTTTCT +
Preference number: 6 (lower is better)
Translates to: SRQAVKLLNPVC*VASTINHKHLS
Trigger: AGAAAGGTGTTTGTGATTGATGGTTGATGCCACCAAGCAAACAGGGTTAAGCAACTTGACTGCCTGCCTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000492264.1
CDS CAA 90 bp TTTAAAAGCAGCAGGCAGGCAGTCAAGTTGCTTAACCCTGTTTGCTaGGTGGCATCAACCATCAATCACAAACACCTTTCTCAGCTCAAG +
Preference number: 6 (lower is better)
Translates to: FKSSRQAVKLLNPVC*VASTINHKHLSQLK
Trigger: CTTGAGCTGAGAAAGGTGTTTGTGATTGATGGTTGATGCCACCAAGCAAACAGGGTTAAGCAACTTGACTGCCTGCCTGCTGCTTTTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000492264.1