Pregenerated sensors for CPS1-IT1 (Homo sapiens)
Ensembl gene IDs: ENSG00000280837Ensembl transcript IDs: ENST00000628368.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTTGTTACTGTTGGAGCAGTACGTACCTTGATGACTAAGCCTCCCTaGATATTGAGGGGCCGAGAAAAAGCAGAGGACTCAGACCCAGAC | + |
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Preference number: 5 (lower is better) Translates to: LVTVGAVRTLMTKPP*ILRGREKAEDSDPD Trigger: GTCTGGGTCTGAGTCCTCTGCTTTTTCTCGGCCCCTCAATATCCAGGGAGGCTTAGTCATCAAGGTACGTACTGCTCCAACAGTAACAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS GCA 90 bp | GAGGACTGCGCACCAATCTCTGGCTCCATAGTCTGCTCCTTCCAATaGACAAGGGTGGAACCAGAAAACCCACGTCTAGCATTCTATATT | + |
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Preference number: 5 (lower is better) Translates to: EDCAPISGSIVCSFQ*TRVEPENPRLAFYI Trigger: AATATAGAATGCTAGACGTGGGTTTTCTGGTTCCACCCTTGTGCATTGGAAGGAGCAGACTATGGAGCCAGAGATTGGTGCGCAGTCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS TCA 90 bp | GAGAAAGAACATGAATCTGGAGAAATGAAAGAGGTGATGTACGTCTaGTTCTACAGTGGGGAGGACTGCGCACCAATCTCTGGCTCCATA | + |
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Preference number: 5 (lower is better) Translates to: EKEHESGEMKEVMYV*FYSGEDCAPISGSI Trigger: TATGGAGCCAGAGATTGGTGCGCAGTCCTCCCCACTGTAGAATCAGACGTACATCACCTCTTTCATTTCTCCAGATTCATGTTCTTTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS TCA 90 bp | AAAAGTACAAAGGGAGTGCGGTACATTGGCAGCAGAGATAGATGTTaGGGCAGGAGAATTTTGGAGTTCTCTGAACGCACACCAAATAAA | + |
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Preference number: 5 (lower is better) Translates to: KSTKGVRYIGSRDRC*GRRILEFSERTPNK Trigger: TTTATTTGGTGTGCGTTCAGAGAACTCCAAAATTCTCCTGCCTCAACATCTATCTCTGCTGCCAATGTACCGCACTCCCTTTGTACTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS GCA 90 bp | TTCATTCCATCAGCTGTCGTATTCTTTCAACTTCAGACCCCTATGTaGCACAAAATGATGGAGACAGGTAGCTTTAGTGGCCATCTATTC | + |
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Preference number: 5 (lower is better) Translates to: FIPSAVVFFQLQTPM*HKMMETGSFSGHLF Trigger: GAATAGATGGCCACTAAAGCTACCTGTCTCCATCATTTTGTGGCACATAGGGGTCTGAAGTTGAAAGAATACGACAGCTGATGGAATGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS TCA 90 bp | TCTAGCACCCCCATGTGGCTTAATTGGAGTGGTTTCATAGGCATTTaGAATCAGTTGCCTGAAACTGAGAACAGTAGAACAGACTATAAT | + |
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Preference number: 5 (lower is better) Translates to: SSTPMWLNWSGFIGI*NQLPETENSRTDYN Trigger: ATTATAGTCTGTTCTACTGTTCTCAGTTTCAGGCAACTGATTTCAAATGCCTATGAAACCACTCCAATTAAGCCACATGGGGGTGCTAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS TCA 90 bp | CAGCTGTCGTATTCTTTCAACTTCAGACCCCTATGTGCCACAAAATaGTGGAGACAGGTAGCTTTAGTGGCCATCTATTCTTGTTATTTA | + |
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Preference number: 5 (lower is better) Translates to: QLSYSFNFRPLCATK*WRQVALVAIYSCYL Trigger: TAAATAACAAGAATAGATGGCCACTAAAGCTACCTGTCTCCATCATTTTGTGGCACATAGGGGTCTGAAGTTGAAAGAATACGACAGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS TCA 90 bp | ATAATGAGTTCAGGGTTTAGGTTTGCTAACGCCGTGGATCATCTGTaGGTTCCACTTCAGGTTTACTTTAGCTTTTGCTATATAATAGAC | + |
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Preference number: 5 (lower is better) Translates to: IMSSGFRFANAVDHL*VPLQVYFSFCYIID Trigger: GTCTATTATATAGCAAAAGCTAAAGTAAACCTGAAGTGGAACTCACAGATGATCCACGGCGTTAGCAAACCTAAACCCTGAACTCATTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS GCA 90 bp | TTAATCCTCCAAGGACCTTTTTCACTATCAATATACCCTTATTTATaGTTAGTTAGAATCTCAACCTGCCTTCTGGTTGTAACGAAAACT | + |
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Preference number: 5 (lower is better) Translates to: LILQGPFSLSIYPYL*LVRISTCLLVVTKT Trigger: AGTTTTCGTTACAACCAGAAGGCAGGTTGAGATTCTAACTAAGCATAAATAAGGGTATATTGATAGTGAAAAAGGTCCTTGGAGGATTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS CCA 72 bp | CTGATTCTACAGTGGGGAGGACTGCGCACCAATCTCTaGCTCCATAGTCTGCTCCTTCCAATGCACAAGGGT | + |
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Preference number: 6 (lower is better) Translates to: LILQWGGLRTNL*LHSLLLPMHKG Trigger: ACCCTTGTGCATTGGAAGGAGCAGACTATGGAGCCAGAGATTGGTGCGCAGTCCTCCCCACTGTAGAATCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS GCA 72 bp | GCACCAATCTCTGGCTCCATAGTCTGCTCCTTCCAATaGACAAGGGTGGAACCAGAAAACCCACGTCTAGCA | + |
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Preference number: 6 (lower is better) Translates to: APISGSIVCSFQ*TRVEPENPRLA Trigger: TGCTAGACGTGGGTTTTCTGGTTCCACCCTTGTGCATTGGAAGGAGCAGACTATGGAGCCAGAGATTGGTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS CAA 72 bp | GCAGTACGTACCTTGATGACTAAGCCTCCCTGGATATaGAGGGGCCGAGAAAAAGCAGAGGACTCAGACCCA | + |
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Preference number: 6 (lower is better) Translates to: AVRTLMTKPPWI*RGREKAEDSDP Trigger: TGGGTCTGAGTCCTCTGCTTTTTCTCGGCCCCTCAATATCCAGGGAGGCTTAGTCATCAAGGTACGTACTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS CCA 72 bp | GTTGGAGCAGTACGTACCTTGATGACTAAGCCTCCCTaGATATTGAGGGGCCGAGAAAAAGCAGAGGACTCA | + |
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Preference number: 6 (lower is better) Translates to: VGAVRTLMTKPP*ILRGREKAEDS Trigger: TGAGTCCTCTGCTTTTTCTCGGCCCCTCAATATCCAGGGAGGCTTAGTCATCAAGGTACGTACTGCTCCAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS TCA 72 bp | AAGGGAGTGCGGTACATTGGCAGCAGAGATAGATGTTaGGGCAGGAGAATTTTGGAGTTCTCTGAACGCACA | + |
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Preference number: 6 (lower is better) Translates to: KGVRYIGSRDRC*GRRILEFSERT Trigger: TGTGCGTTCAGAGAACTCCAAAATTCTCCTGCCTCAACATCTATCTCTGCTGCCAATGTACCGCACTCCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS CCA 72 bp | AGAAATGAAAGAGGTGATGTACGTCTGATTCTACAGTaGGGAGGACTGCGCACCAATCTCTGGCTCCATAGT | + |
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Preference number: 6 (lower is better) Translates to: RNERGDVRLILQ*GGLRTNLWLHS Trigger: ACTATGGAGCCAGAGATTGGTGCGCAGTCCTCCCCACTGTAGAATCAGACGTACATCACCTCTTTCATTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS TCA 72 bp | CATGAATCTGGAGAAATGAAAGAGGTGATGTACGTCTaGTTCTACAGTGGGGAGGACTGCGCACCAATCTCT | + |
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Preference number: 6 (lower is better) Translates to: HESGEMKEVMYV*FYSGEDCAPIS Trigger: AGAGATTGGTGCGCAGTCCTCCCCACTGTAGAATCAGACGTACATCACCTCTTTCATTTCTCCAGATTCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS GCA 72 bp | TCAGCTGTCGTATTCTTTCAACTTCAGACCCCTATGTaGCACAAAATGATGGAGACAGGTAGCTTTAGTGGC | + |
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Preference number: 6 (lower is better) Translates to: SAVVFFQLQTPM*HKMMETGSFSG Trigger: GCCACTAAAGCTACCTGTCTCCATCATTTTGTGGCACATAGGGGTCTGAAGTTGAAAGAATACGACAGCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS TCA 72 bp | TCAGGGTTTAGGTTTGCTAACGCCGTGGATCATCTGTaGGTTCCACTTCAGGTTTACTTTAGCTTTTGCTAT | + |
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Preference number: 6 (lower is better) Translates to: SGFRFANAVDHL*VPLQVYFSFCY Trigger: ATAGCAAAAGCTAAAGTAAACCTGAAGTGGAACTCACAGATGATCCACGGCGTTAGCAAACCTAAACCCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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| CDS GCA 72 bp | CAAGGACCTTTTTCACTATCAATATACCCTTATTTATaGTTAGTTAGAATCTCAACCTGCCTTCTGGTTGTA | + |
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Preference number: 6 (lower is better) Translates to: QGPFSLSIYPYL*LVRISTCLLVV Trigger: TACAACCAGAAGGCAGGTTGAGATTCTAACTAAGCATAAATAAGGGTATATTGATAGTGAAAAAGGTCCTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000628368.1 |
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