RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CPM (Homo sapiens)

Ensembl gene IDs: ENSG00000135678

Ensembl transcript IDs: ENST00000338356.7, ENST00000546373.5, ENST00000546556.1, ENST00000546912.1, ENST00000547134.5, ENST00000547924.1, ENST00000548262.5, ENST00000548954.5, ENST00000549691.1, ENST00000549781.1, ENST00000551568.6, ENST00000551728.5, ENST00000551897.5

Found 347 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGCAGGAAGAGCAGCTCTAGGGGGAACAGGATGAGTATCTCCACATaGTGGGTTGGAGGTACCTGTGAGTCACATCCAGGTGGATGTGTC +
Preference number: 1 (lower is better)
Translates to: SRKSSSRGNRMSIST*WVGGTCESHPGGCV
Trigger: GACACATCCACCTGGATGTGACTCACAGGTACCTCCAACCCATCATGTGGAGATACTCATCCTGTTCCCCCTAGAGCTGCTCTTCCTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR TCA 90 bp GAAGGCTGGGAGCAAGGGACCAGTAAGCTGTTGCAGCAGTGCAGGTaGGATATGAGGCCTCAACTCTGCAGTGTTGACAACCATAGAGAG +
Preference number: 1 (lower is better)
Translates to: EGWEQGTSKLLQQCR*DMRPQLCSVDNHRE
Trigger: CTCTCTATGGTTGTCAACACTGCAGAGTTGAGGCCTCATATCTCACCTGCACTGCTGCAACAGCTTACTGGTCCCTTGCTCCCAGCCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR TCA 90 bp GAGAGAGAGAATGCAGCAGGAAGAGCAGCTCTAGGGGGAACAGGATaGGTATCTCCACATGATGGGTTGGAGGTACCTGTGAGTCACATC +
Preference number: 1 (lower is better)
Translates to: ERENAAGRAALGGTG*VSPHDGLEVPVSHI
Trigger: GATGTGACTCACAGGTACCTCCAACCCATCATGTGGAGATACTCATCCTGTTCCCCCTAGAGCTGCTCTTCCTGCTGCATTCTCTCTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR TCA 90 bp CTTCAGGAAGATCGTGGAGTTTCTCCAGTCAAGGTCCCACTAGAGTaGGTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCA +
Preference number: 1 (lower is better)
Translates to: LQEDRGVSPVKVPLE*VRVAVTWSEQSLIP
Trigger: TGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAACTCACTCTAGTGGGACCTTGACTGGAGAAACTCCACGATCTTCCTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
3UTR TCA 90 bp GAGCAAAGAGAAAGGGTCCCTAACCCCAGACTGCCTGCGAAGAGGTaGAATGGAATTGAATGGGATTATGGTCAGCCAAGGCTTCCTAGT +
Preference number: 1 (lower is better)
Translates to: EQRERVPNPRLPAKR*NGIEWDYGQPRLPS
Trigger: ACTAGGAAGCCTTGGCTGACCATAATCCCATTCAATTCCATTTCACCTCTTCGCAGGCAGTCTGGGGTTAGGGACCCTTTCTCTTTGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR GCA 90 bp ATTATCAAATGGGTAACTGGCCACGAGGGCACCACCATGGAGGTTTaGAGAGAGGACAAACGTCTCTGTTTTCAGCCACTTCATGACTGC +
Preference number: 1 (lower is better)
Translates to: IIKWVTGHEGTTMEV*REDKRLCFQPLHDC
Trigger: GCAGTCATGAAGTGGCTGAAAACAGAGACGTTTGTCCTCTCTGCAAACCTCCATGGTGGTGCCCTCGTGGCCAGTTACCCATTTGATAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551728.5
3UTR CCA 90 bp AGTATAATGCCCCAGTTGCTTGAACACCATTATCAAATGGGTAACTaGCCACGAGGGCACCACCATGGAGGTTTGCAGAGAGGACAAACG +
Preference number: 1 (lower is better)
Translates to: SIMPQLLEHHYQMGN*PRGHHHGGLQRGQT
Trigger: CGTTTGTCCTCTCTGCAAACCTCCATGGTGGTGCCCTCGTGGCCAGTTACCCATTTGATAATGGTGTTCAAGCAACTGGGGCATTATACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551728.5
3UTR TCA 90 bp GGAGGTTTGCAGAGAGGACAAACGTCTCTGTTTTCAGCCACTTCATaGCTGCCACAGTTTCAGGCTGCCTTGAGACATTATTATATTCAA +
Preference number: 1 (lower is better)
Translates to: GGLQRGQTSLFSATS*LPQFQAALRHYYIQ
Trigger: TTGAATATAATAATGTCTCAAGGCAGCCTGAAACTGTGGCAGTCATGAAGTGGCTGAAAACAGAGACGTTTGTCCTCTCTGCAAACCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
3UTR GCA 90 bp AAATGCTCCTGTAGCTCTTCATTCCTTTGTCGTTCTCACTCTCCATaGCAGTATGTCTCATTTCTAGATCCCATAGAACTTTCAATTGAA +
Preference number: 1 (lower is better)
Translates to: KCSCSSSFLCRSHSP*QYVSFLDPIELSIE
Trigger: TTCAATTGAAAGTTCTATGGGATCTAGAAATGAGACATACTGGCATGGAGAGTGAGAACGACAAAGGAATGAAGAGCTACAGGAGCATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR GCA 90 bp ACCAGACTTCTCAATAAGCAACTTATCTATTGCAGTAAGACAATATaGTATGCTTATCTTTCTGGATTCCCCAGGAAGAGATACTTCCAA +
Preference number: 1 (lower is better)
Translates to: TRLLNKQLIYCSKTI*YAYLSGFPRKRYFQ
Trigger: TTGGAAGTATCTCTTCCTGGGGAATCCAGAAAGATAAGCATAGCATATTGTCTTACTGCAATAGATAAGTTGCTTATTGAGAAGTCTGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR TCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCACTCCTAACCTCAGGGTaGTCCGCCCACCTTGGCCTC +
Preference number: 2 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGALLTSG*SAHLGL
Trigger: GAGGCCAAGGTGGGCGGATCACCCTGAGGTTAGGAG...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAAGCCTCCCCAGTAGCTaGGATTACAGGCATGCACCA +
Preference number: 2 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGASLPSS*DYRHAP
Trigger: TGGTGCATGCCTGTAATCCCAGCTACTGGGGAGGCT...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR GCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAGGACCAGTAAGCTGTTaGAGCAGTGCAGGTGAGATA +
Preference number: 2 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGAGPVSC*SSAGEI
Trigger: TATCTCACCTGCACTGCTGCAACAGCTTACTGGTCC...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR TCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCACAATTCCCAGTCCTATaGTCATTTCTCCCTTCTTCT +
Preference number: 2 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGAQFPVL*SFLPSS
Trigger: AGAAGAAGGGAGAAATGATCATAGGACTGGGAATTG...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR CAA 90 bp AAAGGGTCCCTAACCCCAGACTGCCTGCGAAGAGGTGAAATGGAATaGAATGGGATTATGGTCAGCCAAGGCTTCCTAGTGGAGCTGCTA +
Preference number: 2 (lower is better)
Translates to: KGSLTPDCLRRGEME*NGIMVSQGFLVELL
Trigger: TAGCAGCTCCACTAGGAAGCCTTGGCTGACCATAATCCCATTCAATTCCATTTCACCTCTTCGCAGGCAGTCTGGGGTTAGGGACCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR TCA 90 bp CACCATTATCAAATGGGTAACTGGCCACGAGGGCACCACCATGGAGGTTTGCAGGGTTCATGGAAGGCATaGTGTGTATCCGGGTACTAT +
Preference number: 2 (lower is better)
Translates to: HHYQMGNWPRGHHHGGLQGSWKA*CVSGYY
Trigger: ATAGTACCCGGATACACATCATGCCTTCCATGAACC...CTGCAAACCTCCATGGTGGTGCCCTCGTGGCCAGTTACCCATTTGATAATGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000551728.5
3UTR-3UTR GCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTAGCCTCCTGAAAGGCTaGGATTACAGGTGCCCGCCA +
Preference number: 2 (lower is better)
Translates to: SSIETQSYPFRPVFSWATSLLKG*DYRCPP
Trigger: TGGCGGGCACCTGTAATCGCAGCCTTTCAGGAGGCT...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCACAGGCTGGAGTACAATaGCGCAATCCCGGCTCACTG +
Preference number: 2 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSQAGVQ*RNPGSL
Trigger: CAGTGAGCCGGGATTGCGCCATTGTACTCCAGCCTG...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR TCA 90 bp GACAAACGTCTCTGTTTTCAGCCACTTCATGACTGCCACAGTTTCAGGCTGCCTAACAGTCAGGCTTTTTaGCGGCTTCAAATCCATCTG +
Preference number: 2 (lower is better)
Translates to: DKRLCFQPLHDCHSFRLPNSQAF*RLQIHL
Trigger: CAGATGGATTTGAAGCCGTCAAAAAGCCTGACTGTT...AGGCAGCCTGAAACTGTGGCAGTCATGAAGTGGCTGAAAACAGAGACGTTTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
3UTR-3UTR TCA 90 bp AGGACAAACGTCTCTGTTTTCAGCCACTTCATGACTGCCACAGTTTCAGGCTGCAACAGTCAGGCTTTTTaGCGGCTTCAAATCCATCTG +
Preference number: 2 (lower is better)
Translates to: RTNVSVFSHFMTATVSGCNSQAF*RLQIHL
Trigger: CAGATGGATTTGAAGCCGTCAAAAAGCCTGACTGTT...GCAGCCTGAAACTGTGGCAGTCATGAAGTGGCTGAAAACAGAGACGTTTGTCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
3UTR-3UTR GCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTCAAGGTGTGAGCCACTaGTCCTGGCCTTATGGTGAA +
Preference number: 2 (lower is better)
Translates to: SSIETQSYPFRPVFSWATQGVSH*SWPYGE
Trigger: TTCACCATAAGGCCAGGAGCAGTGGCTCACACCTTG...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR TCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAGGTGGTCCCAGTAATTaGGAGAGAGAATGCAGCAGG +
Preference number: 2 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSGGPSN*ERECSR
Trigger: CCTGCTGCATTCTCTCTCTCAATTACTGGGACCACC...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAGTGAGCCACTGCTCCTaGCCTTATGGTGAAGTCTTG +
Preference number: 2 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSVSHCS*PYGEVL
Trigger: CAAGACTTCACCATAAGGCCAGGAGCAGTGGCTCAC...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCACTTCTTCACCCAGGCTaGAGTACAATGGCGCAATCC +
Preference number: 2 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSLLHPG*STMAQS
Trigger: GGATTGCGCCATTGTACTCCAGCCTGGGTGAAGAAG...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR TCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGTGCAGTAACCTGGAGTaGGCAATCCCTGATTCCAGG +
Preference number: 2 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKCSNLE*AIPDSR
Trigger: CCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCA...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
3UTR-3UTR TCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTTGCAGTAACCTGGAGTaGGCAATCCCTGATTCCAGG +
Preference number: 2 (lower is better)
Translates to: QLCSVDNHREQRAEFINICSNLE*AIPDSR
Trigger: CCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCA...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR TCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAAATGTGTGGCGGATTTaGATCCAGGGCTTCTGCCTT +
Preference number: 2 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSNVWRI*IQGFCL
Trigger: AAGGCAGAAGCCCTGGATTCAAATCCGCCACACATT...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR GCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTCAAGGTGTGAGCCACTaGTCCTGGCCTTATGGTGAA +
Preference number: 2 (lower is better)
Translates to: QLCSVDNHREQRAEFINIQGVSH*SWPYGE
Trigger: TTCACCATAAGGCCAGGAGCAGTGGCTCACACCTTG...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR GCA 90 bp AACGTCTCTGTTTTCAGCCACTTCATGACTGCCACAGTTTCAGGCTGCCTTGAGAATTTTCCCTTCCGATaGTGTAATAACAGTCAGGCT +
Preference number: 2 (lower is better)
Translates to: NVSVFSHFMTATVSGCLENFPFR*CNNSQA
Trigger: AGCCTGACTGTTATTACAGCATCGGAAGGGAAAATT...CTCAAGGCAGCCTGAAACTGTGGCAGTCATGAAGTGGCTGAAAACAGAGACGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
3UTR-3UTR GCA 90 bp CACCACCATGGAGGTTTGCAGAGAGGACAAACGTCTCTGTTTTCAGCCACTTCAGCCACAGTTTCAGGCTaGCTTGAGACATTATTATAT +
Preference number: 2 (lower is better)
Translates to: HHHGGLQRGQTSLFSATSATVSG*LETLLY
Trigger: ATATAATAATGTCTCAAGGCAGCCTGAAACTGTGGC...TGAAGTGGCTGAAAACAGAGACGTTTGTCCTCTCTGCAAACCTCCATGGTGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
3UTR-3UTR CCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTAGGGTTGCAGTAACCTaGAGTGAGCAATCCCTGATT +
Preference number: 2 (lower is better)
Translates to: SSIETQSYPFRPVFSWATRVAVT*SEQSLI
Trigger: AATCAGGGATTGCTCACTCCAGGTTACTGCAACCCT...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTCTAGGGAAACGGCTCTaGAGAGAGAGGGGCTTTCTT +
Preference number: 2 (lower is better)
Translates to: QLCSVDNHREQRAEFINILGKRL*RERGFL
Trigger: AAGAAAGCCCCTCTCTCTCCAGAGCCGTTTCCCTAG...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR TCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAGGAGTGAGCAATCCCTaGTTCCAGGTGGTGATGTGG +
Preference number: 2 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIGVSNP*FQVVMW
Trigger: CCACATCACCACCTGGAATCAGGGATTGCTCACTCC...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
3UTR-3UTR TCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATGGAGTGAGCAATCCCTaGTTCCAGGTGGTGATGTGG +
Preference number: 2 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHGVSNP*FQVVMW
Trigger: CCACATCACCACCTGGAATCAGGGATTGCTCACTCC...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
3UTR-3UTR CCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATGCCCTAGGCAGTTTCTaGGAAGGACTGGGAGTAGCA +
Preference number: 2 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYALGSF*EGLGVA
Trigger: TGCTACTCCCAGTCCTTCCCAGAAACTGCCTAGGGC...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR TCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCACTCCTGGCCTTATGGTaGAGTCTTGTATGTAGAAGA +
Preference number: 2 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSLLALW*SLVCRR
Trigger: TCTTCTACATACAAGACTTCACCATAAGGCCAGGAG...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR GCA 90 bp CATCAGGCGTTAAGCTTCGGGAGTATAATGCCCCAGTTGCTTGAACACCATTATAATTTTCCCTTCCGATaGTGTAATAACAGTCAGGCT +
Preference number: 2 (lower is better)
Translates to: HQALSFGSIMPQLLEHHYNFPFR*CNNSQA
Trigger: AGCCTGACTGTTATTACAGCATCGGAAGGGAAAATT...ATAATGGTGTTCAAGCAACTGGGGCATTATACTCCCGAAGCTTAACGCCTGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000551728.5
3UTR-3UTR CCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGAGGGTTGCAGTAACCTaGAGTGAGCAATCCCTGATT +
Preference number: 2 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKRVAVT*SEQSLI
Trigger: AATCAGGGATTGCTCACTCCAGGTTACTGCAACCCT...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
3UTR-3UTR CCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATGTGCTGTGTGGACGATaGACTGAAGAGGAGAAGGCT +
Preference number: 2 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYVLCGR*TEEEKA
Trigger: AGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCAC...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR GCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCACGTTCTCACTCTCCATaGCAGTATGTCTCATTTCTA +
Preference number: 2 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSRSHSP*QYVSFL
Trigger: TAGAAATGAGACATACTGGCATGGAGAGTGAGAACG...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR CAA 90 bp ATAATACAATGTTGTAAATCCAATAGTAGAGATAACCAGTTTATTTaGGGGAGCAAAGAGAAAGGGTCCCTAACCCCAGACTGCCTGCGA +
Preference number: 2 (lower is better)
Translates to: IIQCCKSNSRDNQFI*GSKEKGSLTPDCLR
Trigger: TCGCAGGCAGTCTGGGGTTAGGGACCCTTTCTCTTTGCTCCCCAAAATAAACTGGTTATCTCTACTATTGGATTTACAACATTGTATTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR TCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTCAATTCCCAGTCCTATaGTCATTTCTCCCTTCTTCT +
Preference number: 2 (lower is better)
Translates to: QLCSVDNHREQRAEFINIQFPVL*SFLPSS
Trigger: AGAAGAAGGGAGAAATGATCATAGGACTGGGAATTG...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR TCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCATTGACCTGTATGCTTTaGAGCTCTATAGAGACACAA +
Preference number: 2 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSLTCML*SSIETQ
Trigger: TTGTGTCTCTATAGAGCTTCAAAGCATACAGGTCAA...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR TCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATCTGCCTGCGAAGAGGTaGAATGGAATTGAATGGGAT +
Preference number: 2 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYLPAKR*NGIEWD
Trigger: ATCCCATTCAATTCCATTTCACCTCTTCGCAGGCAG...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAGGGTTGCAGTAACCTaGAGTGAGCAATCCCTGATT +
Preference number: 2 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHRVAVT*SEQSLI
Trigger: AATCAGGGATTGCTCACTCCAGGTTACTGCAACCCT...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
3UTR-3UTR GCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAGAAAGGAAAGAAATCTaGTCACCAGAGTTGCTATTT +
Preference number: 2 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSERKEI*SPELLF
Trigger: AAATAGCAACTCTGGTGAGCAGATTTCTTTCCTTTC...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR GCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCATTGGTTATCATCTATTaGTGCTGCACAAATTACCAG +
Preference number: 2 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSLVIIY*CCTNYQ
Trigger: CTGGTAATTTGTGCAGCAGCAATAGATGATAACCAA...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR GCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAATCATCTATTGCTGCTaGACAAATTACCAGATTTCA +
Preference number: 2 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSIIYCC*TNYQIS
Trigger: TGAAATCTGGTAATTTGTGCAGCAGCAATAGATGAT...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATTGGGCCACTAAGATGTaGTTACATATTTTCTCTCAC +
Preference number: 2 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYWATKM*LHIFSH
Trigger: GTGAGAGAAAATATGTAACCACATCTTAGTGGCCCA...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATCTAGAGTTACATCTTTaGAGTCATCAGCCTAATGGA +
Preference number: 2 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYLELHL*SHQPNG
Trigger: TCCATTAGGCTGATGACTCCAAAGATGTAACTCTAG...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR GCA 90 bp TTCTTGAAGCATAGGTATGTGCAAGATATTGAAAAACATCATCATCAGGCGTTAGCCACAGTTTCAGGCTaGCTTGAGACATTATTATAT +
Preference number: 2 (lower is better)
Translates to: FLKHRYVQDIEKHHHQALATVSG*LETLLY
Trigger: ATATAATAATGTCTCAAGGCAGCCTGAAACTGTGGC...TAACGCCTGATGATGATGTTTTTCAATATCTTGCACATACCTATGCTTCAAGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000551728.5
3UTR-3UTR GCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATGTTATCATCTATTGCTaGTGCACAAATTACCAGATT +
Preference number: 2 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYVIIYC*CTNYQI
Trigger: AATCTGGTAATTTGTGCAGCAGCAATAGATGATAAC...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR CCA 72 bp GGTACCTGTGAGTCACATCCAGGTGGATGTGTCCTGTaGGCAGTGGGACGCGAGTCTGAAGCTCAGGCAAGA +
Preference number: 3 (lower is better)
Translates to: GTCESHPGGCVL*AVGRESEAQAR
Trigger: TCTTGCCTGAGCTTCAGACTCGCGTCCCACTGCCCACAGGACACATCCACCTGGATGTGACTCACAGGTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR TCA 72 bp AGGTGGATGTGTCCTGTGGGCAGTGGGACGCGAGTCTaGAGCTCAGGCAAGAGGCTAGAGTTACATCTTTGG +
Preference number: 3 (lower is better)
Translates to: RWMCPVGSGTRV*SSGKRLELHLW
Trigger: CCAAAGATGTAACTCTAGCCTCTTGCCTGAGCTTCAGACTCGCGTCCCACTGCCCACAGGACACATCCACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR CCA 72 bp CCCCAGTTGCTTGAACACCATTATCAAATGGGTAACTaGCCACGAGGGCACCACCATGGAGGTTTGCAGAGA +
Preference number: 3 (lower is better)
Translates to: PQLLEHHYQMGN*PRGHHHGGLQR
Trigger: TCTCTGCAAACCTCCATGGTGGTGCCCTCGTGGCCAGTTACCCATTTGATAATGGTGTTCAAGCAACTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551728.5
3UTR-3UTR CAA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAATTGACCTGTATGCTTaGAAGCTCTATAGAGACACA +
Preference number: 3 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGAIDLYA*KLYRDT
Trigger: TGTGTCTCTATAGAGCTTCAAAGCATACAGGTCAAT...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CAA 90 bp CACCATTATCAAATGGGTAACTGGCCACGAGGGCACCACCATGGAGGTTTGCAGGTGATTTCAGGGTCTTaGCCATCACTGGTTACGAGA +
Preference number: 3 (lower is better)
Translates to: HHYQMGNWPRGHHHGGLQVISGS*PSLVTR
Trigger: TCTCGTAACCAGTGATGGCAAAGACCCTGAAATCAC...CTGCAAACCTCCATGGTGGTGCCCTCGTGGCCAGTTACCCATTTGATAATGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000551728.5
3UTR TCA 72 bp GATCGTGGAGTTTCTCCAGTCAAGGTCCCACTAGAGTaGGTTAGGGTTGCAGTAACCTGGAGTGAGCAATCC +
Preference number: 3 (lower is better)
Translates to: DRGVSPVKVPLE*VRVAVTWSEQS
Trigger: GGATTGCTCACTCCAGGTTACTGCAACCCTAACTCACTCTAGTGGGACCTTGACTGGAGAAACTCCACGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
3UTR TCA 72 bp GAAAGGGTCCCTAACCCCAGACTGCCTGCGAAGAGGTaGAATGGAATTGAATGGGATTATGGTCAGCCAAGG +
Preference number: 3 (lower is better)
Translates to: ERVPNPRLPAKR*NGIEWDYGQPR
Trigger: CCTTGGCTGACCATAATCCCATTCAATTCCATTTCACCTCTTCGCAGGCAGTCTGGGGTTAGGGACCCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR GCA 72 bp TTGGGGAGCAAAGAGAAAGGGTCCCTAACCCCAGACTaGCTGCGAAGAGGTGAAATGGAATTGAATGGGATT +
Preference number: 3 (lower is better)
Translates to: LGSKEKGSLTPD*LRRGEMELNGI
Trigger: AATCCCATTCAATTCCATTTCACCTCTTCGCAGGCAGTCTGGGGTTAGGGACCCTTTCTCTTTGCTCCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CAA 90 bp AGGACAAACGTCTCTGTTTTCAGCCACTTCATGACTGCCACAGTTTCAGGCTGCGTGATTTCAGGGTCTTaGCCATCACTGGTTACGAGA +
Preference number: 3 (lower is better)
Translates to: RTNVSVFSHFMTATVSGCVISGS*PSLVTR
Trigger: TCTCGTAACCAGTGATGGCAAAGACCCTGAAATCAC...GCAGCCTGAAACTGTGGCAGTCATGAAGTGGCTGAAAACAGAGACGTTTGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
3UTR-3UTR CAA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCATCCCAGGTTCCTAGCTaGGTGGTCCCAGTAATTGAG +
Preference number: 3 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSSQVPS*VVPVIE
Trigger: CTCAATTACTGGGACCACCAAGCTAGGAACCTGGGA...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR CCA 72 bp CATGAAAACACTCTTCTGTCAGCGTTCATAGTGAGCTaGGAGGTTGCCTACGCATTAAGACCTAGCTTCATA +
Preference number: 3 (lower is better)
Translates to: HENTLLSAFIVS*EVAYALRPSFI
Trigger: TATGAAGCTAGGTCTTAATGCGTAGGCAACCTCCCAGCTCACTATGAACGCTGACAGAAGAGTGTTTTCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CAA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAGTCTCCTGGCACCCCTaGTTCATTCATTCATTCAGT +
Preference number: 3 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSVSWHP*FIHSFS
Trigger: ACTGAATGAATGAATGAACAAGGGGTGCCAGGAGAC...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR CCA 72 bp GAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTaGGCCACTAAGATGTGGTTACATATTTTCTCTCAC +
Preference number: 3 (lower is better)
Translates to: ETQSYPFRPVFS*ATKMWLHIFSH
Trigger: GTGAGAGAAAATATGTAACCACATCTTAGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CAA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATCTCAACTCTGCAGTGTaGACAACCATAGAGAGCAGA +
Preference number: 3 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYLNSAV*TTIESR
Trigger: TCTGCTCTCTATGGTTGTCAACACTGCAGAGTTGAG...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CAA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAACCACATATTGCTTATaGTGGAATTTGGAAACATCC +
Preference number: 3 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSTTYCL*WNLETS
Trigger: GGATGTTTCCAAATTCCACAATAAGCAATATGTGGT...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CAA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTACCACATATTGCTTATaGTGGAATTTGGAAACATCC +
Preference number: 3 (lower is better)
Translates to: QLCSVDNHREQRAEFINITTYCL*WNLETS
Trigger: GGATGTTTCCAAATTCCACAATAAGCAATATGTGGT...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR-3UTR CAA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATAACTACAACCAGTTGTaGACTTTTGTTTCAAGTGGC +
Preference number: 3 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYNYNQL*TFVSSG
Trigger: GCCACTTGAAACAAAAGTCAACAACTGGTTGTAGTT...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR TCA 72 bp CAATTGAAAGTAATAACCAAGGCAACTCACTTTCCATaGGTAATACACCACACTTCTAGAAATCAGCCTATA +
Preference number: 3 (lower is better)
Translates to: QLKVITKATHFP*VIHHTSRNQPI
Trigger: TATAGGCTGATTTCTAGAAGTGTGGTGTATTACTCATGGAAAGTGAGTTGCCTTGGTTATTACTTTCAATTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAGGAGTGAGCAATCCCTaGTTCCAGGTGGTGATGTGG +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGAGVSNP*FQVVMW
Trigger: CCACATCACCACCTGGAATCAGGGATTGCTCACTCC...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCATGCAGTAACCTGGAGTaGGCAATCCCTGATTCCAGG +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGACSNLE*AIPDSR
Trigger: CCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCA...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCATGCAGTGCAGTGATGTaGTCTTGGCTCACTGCAACC +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGACSAVM*SWLTAT
Trigger: GGTTGCAGTGAGCCAAGATCACATCACTGCACTGCA...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCACAAGGTGTGAGCCACTaGTCCTGGCCTTATGGTGAA +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGAQGVSH*SWPYGE
Trigger: TTCACCATAAGGCCAGGAGCAGTGGCTCACACCTTG...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAGTGATCTTGGCTCACTaGAACCTCTGCCTTCTGGGT +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGAVILAH*NLCLLG
Trigger: ACCCAGAAGGCAGAGGTTGCAGTGAGCCAAGATCAC...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAAATGTGTGGCGGATTTaGATCCAGGGCTTCTGCCTT +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGANVWRI*IQGFCL
Trigger: AAGGCAGAAGCCCTGGATTCAAATCCGCCACACATT...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAGCGTTCATAGTGAGCTaGGAGGTTGCCTACGCATTA +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGAAFIVS*EVAYAL
Trigger: TAATGCGTAGGCAACCTCCCAGCTCACTATGAACGC...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGAAGCCGGAAAGGCGTTaGGCAGGGAGGTGGCTTGGG +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVKPERR*AGRWLG
Trigger: CCCAAGCCACCTCCCTGCCCAACGCCTTTCCGGCTT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGCCGTGTTGGCCAGGCTaGTCTCGAGCTCCTGACCTC +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVPCWPG*SRAPDL
Trigger: GAGGTCAGGAGCTCGAGACCAGCCTGGCCAACACGG...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGCTGGTCTTGAGCTCCTaGCCTCAAGTGATCCGCCCG +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVLVLSS*PQVIRP
Trigger: CGGGCGGATCACTTGAGGTCAGGAGCTCAAGACCAG...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCACTCCTGGCCTTATGGTaGAGTCTTGTATGTAGAAGA +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGALLALW*SLVCRR
Trigger: TCTTCTACATACAAGACTTCACCATAAGGCCAGGAG...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCACCTAGCTTCATAAAATaGCTCAAAGCCCTAGGCAGT +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGAPSFIK*LKALGS
Trigger: ACTGCCTAGGGCTTTGAGTCATTTTATGAAGCTAGG...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAAATTCTGTGTTCCTTTaGAAACCGCCCCACAACAAG +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGANSVFL*KPPHNK
Trigger: CTTGTTGTGGGGCGGTTTCCAAAGGAACACAGAATT...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGCAGGCTGGAGTACAATaGCGCAATCCCGGCTCACTG +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVQAGVQ*RNPGSL
Trigger: CAGTGAGCCGGGATTGCGCCATTGTACTCCAGCCTG...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAAGGGGCTTTCTTAATTaGCCTGTATGCTTTGAAGCT +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGARGFLN*PVCFEA
Trigger: AGCTTCAAAGCATACAGGTCAATTAAGAAAGCCCCT...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAAATTCAATGCCCAGTTaGAAAATTGCTTGGGGCTTG +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGANSMPS*KIAWGL
Trigger: CAAGCCCCAAGCAATTTTTCAACTGGGCATTGAATT...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGACGAGGGCACCACCATaGAGGTTTGCAGAGAGGACA +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVTRAPP*RFAERT
Trigger: TGTCCTCTCTGCAAACCTCCATGGTGGTGCCCTCGT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCATCTTGCATTCCACCTTaGAGTGGATACCAAGAGTAT +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGASCIPP*SGYQEY
Trigger: ATACTCTTGGTATCCACTCCAAGGTGGAATGCAAGA...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAAGAGCACTGAAGTTCTaGGATTTCTCCGGAATAATC +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGARALKF*DFSGII
Trigger: GATTATTCCGGAGAAATCCCAGAACTTCAGTGCTCT...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGAGCCTCCCCAGTAGCTaGGATTACAGGCATGCACCA +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVSLPSS*DYRHAP
Trigger: TGGTGCATGCCTGTAATCCCAGCTACTGGGGAGGCT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp GTTTGCAGAGAGGACAAACGTCTCTGTTTTCAGCCACTTCATGACTGCCACAGTCCTGGCGGTGGTAGTTaGAATCCAGCGCAGCTACCA +
Preference number: 4 (lower is better)
Translates to: VCREDKRLCFQPLHDCHSPGGGS*NPAQLP
Trigger: TGGTAGCTGCGCTGGATTTCAACTACCACCGCCAGG...ACTGTGGCAGTCATGAAGTGGCTGAAAACAGAGACGTTTGTCCTCTCTGCAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS-3UTR TCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAACTACAACCAGTTGTTaGCTTTTGTTTCAAGTGGCT +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGATTTSC*LLFQVA
Trigger: AGCCACTTGAAACAAAAGTCAACAACTGGTTGTAGT...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGCTTCTTCACCCAGGCTaGAGTACAATGGCGCAATCC +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVLLHPG*STMAQS
Trigger: GGATTGCGCCATTGTACTCCAGCCTGGGTGAAGAAG...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTAAGCCGGAAAGGCGTTaGGCAGGGAGGTGGCTTGGG +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATKPERR*AGRWLG
Trigger: CCCAAGCCACCTCCCTGCCCAACGCCTTTCCGGCTT...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGGCAACCTCTGCCTTCTaGGTTCAGGCGATTTCTCCT +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVATSAF*VQAISP
Trigger: AGGAGAAATCGCCTGAACCCAGAAGGCAGAGGTTGC...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCACTATGCTTATCTTTCTaGATTCCCCAGGAAGAGATA +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGALCLSF*IPQEEI
Trigger: TATCTCTTCCTGGGGAATCCAGAAAGATAAGCATAG...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp TTTGCAGAGAGGACAAACGTCTCTGTTTTCAGCCACTTCATGACTGCCACAGTTCCTGGCGGTGGTAGTTaGAATCCAGCGCAGCTACCA +
Preference number: 4 (lower is better)
Translates to: FAERTNVSVFSHFMTATVPGGGS*NPAQLP
Trigger: TGGTAGCTGCGCTGGATTTCAACTACCACCGCCAGG...AACTGTGGCAGTCATGAAGTGGCTGAAAACAGAGACGTTTGTCCTCTCTGCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS-3UTR TCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCACTCCTAACCTCAGGGTaGTCCGCCCACCTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSLLTSG*SAHLGL
Trigger: GAGGCCAAGGTGGGCGGATCACCCTGAGGTTAGGAG...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCATTGGTTATCATCTATTaGTGCTGCACAAATTACCAG +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGALVIIY*CCTNYQ
Trigger: CTGGTAATTTGTGCAGCAGCAATAGATGATAACCAA...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGGGAGTAGCAGTCTCCTaGCACCCCTTGTTCATTCAT +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVGVAVS*HPLFIH
Trigger: ATGAATGAACAAGGGGTGCCAGGAGACTGCTACTCC...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGATGAGTATCTCCACATaGTGGGTTGGAGGTACCTGT +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVMSIST*WVGGTC
Trigger: ACAGGTACCTCCAACCCATCATGTGGAGATACTCAT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp AGGACAAACGTCTCTGTTTTCAGCCACTTCATGACTGCCACAGTTTCAGGCTGCACCACCATGGAGGTTTaGAGAGAGGACAAACGTCTC +
Preference number: 4 (lower is better)
Translates to: RTNVSVFSHFMTATVSGCTTMEV*REDKRL
Trigger: GAGACGTTTGTCCTCTCTGCAAACCTCCATGGTGGT...GCAGCCTGAAACTGTGGCAGTCATGAAGTGGCTGAAAACAGAGACGTTTGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS-3UTR CCA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCACTTCCACAATTACATTaGGTAATGGATTTCCATTCT +
Preference number: 4 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGALPQLH*VMDFHS
Trigger: AGAATGGAAATCCATTACCCAATGTAATTGTGGAAG...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGCACCTTTGTGATGTGTaGATCATGTCCAGGGACTGT +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVHLCDV*IMSRDC
Trigger: ACAGTCCCTGGACATGATCCACACATCACAAAGGTG...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGAGGGTTGCAGTAACCTaGAGTGAGCAATCCCTGATT +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVRVAVT*SEQSLI
Trigger: AATCAGGGATTGCTCACTCCAGGTTACTGCAACCCT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
CDS-3UTR CCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTCCGTGTTGGCCAGGCTaGTCTCGAGCTCCTGACCTC +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFINIPCWPG*SRAPDL
Trigger: GAGGTCAGGAGCTCGAGACCAGCCTGGCCAACACGG...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR CAA 72 bp CTAACCCCAGACTGCCTGCGAAGAGGTGAAATGGAATaGAATGGGATTATGGTCAGCCAAGGCTTCCTAGTG +
Preference number: 4 (lower is better)
Translates to: LTPDCLRRGEME*NGIMVSQGFLV
Trigger: CACTAGGAAGCCTTGGCTGACCATAATCCCATTCAATTCCATTTCACCTCTTCGCAGGCAGTCTGGGGTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTGGAGTGAGCAATCCCTaGTTCCAGGTGGTGATGTGG +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATGVSNP*FQVVMW
Trigger: CCACATCACCACCTGGAATCAGGGATTGCTCACTCC...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp TGCAGAGAGGACAAACGTCTCTGTTTTCAGCCACTTCATGACTGCCACAGTTTCACCACCATGGAGGTTTaGAGAGAGGACAAACGTCTC +
Preference number: 4 (lower is better)
Translates to: CREDKRLCFQPLHDCHSFTTMEV*REDKRL
Trigger: GAGACGTTTGTCCTCTCTGCAAACCTCCATGGTGGT...GAAACTGTGGCAGTCATGAAGTGGCTGAAAACAGAGACGTTTGTCCTCTCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS-3UTR GCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGAGAAGGAAGAAATGCTaGTCAGAGAGGCCAAGAAGA +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVRRKKC*SERPRR
Trigger: TCTTCTTGGCCTCTCTGAGCAGCATTTCTTCCTTCT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546373.5
CDS-3UTR CCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGAATTCTGTGTTCCTTTaGAAACCGCCCCACAACAAG +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVNSVFL*KPPHNK
Trigger: CTTGTTGTGGGGCGGTTTCCAAAGGAACACAGAATT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTCCTGGCGGTGGTAGTTaGAATCCAGCGCAGCTACCA +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFINIPGGGS*NPAQLP
Trigger: TGGTAGCTGCGCTGGATTTCAACTACCACCGCCAGG...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGTACTGTGTAAGTGAGTaGCAGAACTGTAGTTTTGGG +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVYCVSE*QNCSFG
Trigger: CCCAAAACTACAGTTCTGTCACTCACTTACACAGTA...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp CACCACCATGGAGGTTTGCAGAGAGGACAAACGTCTCTGTTTTCAGCCACTTCAAACAGTCAGGCTTTTTaGCGGCTTCAAATCCATCTG +
Preference number: 4 (lower is better)
Translates to: HHHGGLQRGQTSLFSATSNSQAF*RLQIHL
Trigger: CAGATGGATTTGAAGCCGTCAAAAAGCCTGACTGTT...TGAAGTGGCTGAAAACAGAGACGTTTGTCCTCTCTGCAAACCTCCATGGTGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS-3UTR TCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTTGCAGTAACCTGGAGTaGGCAATCCCTGATTCCAGG +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATCSNLE*AIPDSR
Trigger: CCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCA...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATCTCCTAACCTCAGGGTaGTCCGCCCACCTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHLLTSG*SAHLGL
Trigger: GAGGCCAAGGTGGGCGGATCACCCTGAGGTTAGGAG...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATACTCCTAACCTCAGGGTaGTCCGCCCACCTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHILLTSG*SAHLGL
Trigger: GAGGCCAAGGTGGGCGGATCACCCTGAGGTTAGGAG...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTTGGTCAGGCTGGTTTTaGACTCCTAACCTCAGGGTG +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATWSGWF*TPNLRV
Trigger: CACCCTGAGGTTAGGAGTTCAAAACCAGCCTGACCA...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGGTGTGGACGATGGACTaGAGAGGAGAAGGCTGGGAG +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKVWTMD*RGEGWE
Trigger: CTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACAC...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGACCGTGCCTGACTGCTaGTTTCTAAATACCATTTCA +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVTVPDC*FLNTIS
Trigger: TGAAATGGTATTTAGAAAGCAGCAGTCAGGCACGGT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGAGAGCACTGAAGTTCTaGGATTTCTCCGGAATAATC +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVRALKF*DFSGII
Trigger: GATTATTCCGGAGAAATCCCAGAACTTCAGTGCTCT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGAGGCCTGTATTTTCTTaGGCCACTAAGATGTGGTTA +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVRPVFS*ATKMWL
Trigger: TAACCACATCTTAGTGGCCCAAGAAAATACAGGCCT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTCTAGGGAAACGGCTCTaGAGAGAGAGGGGCTTTCTT +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATLGKRL*RERGFL
Trigger: AAGAAAGCCCCTCTCTCTCCAGAGCCGTTTCCCTAG...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTGTGCTGTGTGGACGATaGACTGAAGAGGAGAAGGCT +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATVLCGR*TEEEKA
Trigger: AGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCAC...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AACGTCTCTGTTTTCAGCCACTTCATGACTGCCACAGTTTCAGGCTGCCTTGAGTACTGTGTAAGTGAGTaGCAGAACTGTAGTTTTGGG +
Preference number: 4 (lower is better)
Translates to: NVSVFSHFMTATVSGCLEYCVSE*QNCSFG
Trigger: CCCAAAACTACAGTTCTGTCACTCACTTACACAGTA...CTCAAGGCAGCCTGAAACTGTGGCAGTCATGAAGTGGCTGAAAACAGAGACGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS-3UTR TCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGAGGATATTTACAGCATaGCAGCTCCAACGTAATTTC +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVRIFTA*QLQRNF
Trigger: GAAATTACGTTGGAGCTGTCATGCTGTAAATATCCT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGCCTTTAGTTACTTGCTaGATACACAGGATTAAGGAG +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVPLVTC*IHRIKE
Trigger: CTCCTTAATCCTGTGTATTCAGCAAGTAACTAAAGG...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGACAGTCTCATCTCCATaGATATTTGCCACGTATTTG +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVTVSSP*IFATYL
Trigger: CAAATACGTGGCAAATATGCATGGAGATGAGACTGT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR GCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGGCTCACTGCAACCTCTaGCTTCTGGGTTCAGGCGAT +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKAHCNL*LLGSGD
Trigger: ATCGCCTGAACCCAGAAGGCAGAGGTTGCAGTGAGC...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTACGAGGGCACCACCATaGAGGTTTGCAGAGAGGACA +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFINITRAPP*RFAERT
Trigger: TGTCCTCTCTGCAAACCTCCATGGTGGTGCCCTCGT...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGACGAGGGCACCACCATaGAGGTTTGCAGAGAGGACA +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKTRAPP*RFAERT
Trigger: TGTCCTCTCTGCAAACCTCCATGGTGGTGCCCTCGT...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTTATCAAATGGGTAACTaGCCACGAGGGCACCACCAT +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATYQMGN*PRGHHH
Trigger: ATGGTGGTGCCCTCGTGGCCAGTTACCCATTTGATA...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATGGTGGATGTGTCCTGTaGGCAGTGGGACGCGAGTCT +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYGGCVL*AVGRES
Trigger: AGACTCGCGTCCCACTGCCCACAGGACACATCCACC...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTGGAGTAGCAGTCTCCTaGCACCCCTTGTTCATTCAT +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATGVAVS*HPLFIH
Trigger: ATGAATGAACAAGGGGTGCCAGGAGACTGCTACTCC...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGCAAAGGAACGCAGCTTaGCCTCCCAAAGTGCTGGGA +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKQRNAA*PPKVLG
Trigger: TCCCAGCACTTTGGGAGGCCAAGCTGCGTTCCTTTG...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546556.1
CDS-3UTR TCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATCCTGGCGGTGGTAGTTaGAATCCAGCGCAGCTACCA +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHPGGGS*NPAQLP
Trigger: TGGTAGCTGCGCTGGATTTCAACTACCACCGCCAGG...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATCCTGGCGGTGGTAGTTaGAATCCAGCGCAGCTACCA +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYPGGGS*NPAQLP
Trigger: TGGTAGCTGCGCTGGATTTCAACTACCACCGCCAGG...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp ACTGCCACAGTTTCAGGCTGCCTTGAGACATTATTATATTCAAAAGCATCGGGGGGTTCATGGAAGGCATaGTGTGTATCCGGGTACTAT +
Preference number: 4 (lower is better)
Translates to: TATVSGCLETLLYSKASGGSWKA*CVSGYY
Trigger: ATAGTACCCGGATACACATCATGCCTTCCATGAACC...CCCCGATGCTTTTGAATATAATAATGTCTCAAGGCAGCCTGAAACTGTGGCAGT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS-3UTR TCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGTGGTCAGGCTGGTTTTaGACTCCTAACCTCAGGGTG +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKWSGWF*TPNLRV
Trigger: CACCCTGAGGTTAGGAGTTCAAAACCAGCCTGACCA...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTTGGTCAGGCTGGTTTTaGACTCCTAACCTCAGGGTG +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFINIWSGWF*TPNLRV
Trigger: CACCCTGAGGTTAGGAGTTCAAAACCAGCCTGACCA...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGGGTGGTCCCAGTAATTaGGAGAGAGAATGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKGGPSN*ERECSR
Trigger: CCTGCTGCATTCTCTCTCTCAATTACTGGGACCACC...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATGTGTGGACGATGGACTaGAGAGGAGAAGGCTGGGAG +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHVWTMD*RGEGWE
Trigger: CTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACAC...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTCTGCCTGCGAAGAGGTaGAATGGAATTGAATGGGAT +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATLPAKR*NGIEWD
Trigger: ATCCCATTCAATTCCATTTCACCTCTTCGCAGGCAG...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAATGAGCCACCGTGCCTaGCTGCTGCTTTCTAAATAC +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSMSHRA*LLLSKY
Trigger: GTATTTAGAAAGCAGCAGTCAGGCACGGTGGCTCAT...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAAGCCTCCTGAAAGGCTaGGATTACAGGTGCCCGCCA +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHISLLKG*DYRCPP
Trigger: TGGCGGGCACCTGTAATCGCAGCCTTTCAGGAGGCT...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR GCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAGCCTCCTGAAAGGCTaGGATTACAGGTGCCCGCCA +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHSLLKG*DYRCPP
Trigger: TGGCGGGCACCTGTAATCGCAGCCTTTCAGGAGGCT...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR GCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGGTGATCTTGGCTCACTaGAACCTCTGCCTTCTGGGT +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKVILAH*NLCLLG
Trigger: ACCCAGAAGGCAGAGGTTGCAGTGAGCCAAGATCAC...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp ACTATTGATCAGATTTGTGATTTCAGGGTCTTTGCCATCACTGGTTACGAGATAACGAGGGCACCACCATaGAGGTTTGCAGAGAGGACA +
Preference number: 4 (lower is better)
Translates to: TIDQICDFRVFAITGYEITRAPP*RFAERT
Trigger: TGTCCTCTCTGCAAACCTCCATGGTGGTGCCCTCGT...TATCTCGTAACCAGTGATGGCAAAGACCCTGAAATCACAAATCTGATCAATAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS-3UTR CCA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGACTCTCCATATTTGTTaGTTCTATAGGGGCAGATAT +
Preference number: 4 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVTLHIC*FYRGRY
Trigger: ATATCTGCCCCTATAGAACCAACAAATATGGAGAGT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTCACCTTTGTGATGTGTaGATCATGTCCAGGGACTGT +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATHLCDV*IMSRDC
Trigger: ACAGTCCCTGGACATGATCCACACATCACAAAGGTG...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGGTGAGCCACTGCTCCTaGCCTTATGGTGAAGTCTTG +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKVSHCS*PYGEVL
Trigger: CAAGACTTCACCATAAGGCCAGGAGCAGTGGCTCAC...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
CDS-3UTR CCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATCAGGCTGGAGTACAATaGCGCAATCCCGGCTCACTG +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYQAGVQ*RNPGSL
Trigger: CAGTGAGCCGGGATTGCGCCATTGTACTCCAGCCTG...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAGCGTTCATAGTGAGCTaGGAGGTTGCCTACGCATTA +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSAFIVS*EVAYAL
Trigger: TAATGCGTAGGCAACCTCCCAGCTCACTATGAACGC...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp ATTTTCCCTTCCGATGCTGTAATAACAGTCAGGCTTTTTGACGGCTTCAAATCCGGTTCATGGAAGGCATaGTGTGTATCCGGGTACTAT +
Preference number: 4 (lower is better)
Translates to: IFPSDAVITVRLFDGFKSGSWKA*CVSGYY
Trigger: ATAGTACCCGGATACACATCATGCCTTCCATGAACC...GGATTTGAAGCCGTCAAAAAGCCTGACTGTTATTACAGCATCGGAAGGGAAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS-3UTR TCA 90 bp ACTGCCACAGTTTCAGGCTGCCTTGAGACATTATTATATTCAAAAGCATCGGGGAACAGTCAGGCTTTTTaGCGGCTTCAAATCCATCTG +
Preference number: 4 (lower is better)
Translates to: TATVSGCLETLLYSKASGNSQAF*RLQIHL
Trigger: CAGATGGATTTGAAGCCGTCAAAAAGCCTGACTGTT...CCCCGATGCTTTTGAATATAATAATGTCTCAAGGCAGCCTGAAACTGTGGCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS-3UTR TCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATGGTTGGAGGTACCTGTaGGTCACATCCAGGTGGATG +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHGWRYL*VTSRWM
Trigger: CATCCACCTGGATGTGACTCACAGGTACCTCCAACC...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAATGAGTATCTCCACATaGTGGGTTGGAGGTACCTGT +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSMSIST*WVGGTC
Trigger: ACAGGTACCTCCAACCCATCATGTGGAGATACTCAT...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTGGACCAGTAAGCTGTTaGAGCAGTGCAGGTGAGATA +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFINIGPVSC*SSAGEI
Trigger: TATCTCACCTGCACTGCTGCAACAGCTTACTGGTCC...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTTATCAAATGGGTAACTaGCCACGAGGGCACCACCAT +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFINIYQMGN*PRGHHH
Trigger: ATGGTGGTGCCCTCGTGGCCAGTTACCCATTTGATA...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp CATCGGGGAAATTTCGATTCAAGTCATACTGGTTATAATTTTCCCTTCCGATGCTATCAAATGGGTAACTaGCCACGAGGGCACCACCAT +
Preference number: 4 (lower is better)
Translates to: HRGNFDSSHTGYNFPFRCYQMGN*PRGHHH
Trigger: ATGGTGGTGCCCTCGTGGCCAGTTACCCATTTGATA...GCATCGGAAGGGAAAATTATAACCAGTATGACTTGAATCGAAATTTCCCCGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000551728.5
CDS-3UTR CCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAAGGGTTGCAGTAACCTaGAGTGAGCAATCCCTGATT +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSRVAVT*SEQSLI
Trigger: AATCAGGGATTGCTCACTCCAGGTTACTGCAACCCT...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAGCCTCCCCAGTAGCTaGGATTACAGGCATGCACCA +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHSLPSS*DYRHAP
Trigger: TGGTGCATGCCTGTAATCCCAGCTACTGGGGAGGCT...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAGCCCTAGGCAGTTTCTaGGAAGGACTGGGAGTAGCA +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIALGSF*EGLGVA
Trigger: TGCTACTCCCAGTCCTTCCCAGAAACTGCCTAGGGC...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp TTCCCTTCCGATGCTGTAATAACAGTCAGGCTTTTTGACGGCTTCAAATCCATCTACTGTGTAAGTGAGTaGCAGAACTGTAGTTTTGGG +
Preference number: 4 (lower is better)
Translates to: FPSDAVITVRLFDGFKSIYCVSE*QNCSFG
Trigger: CCCAAAACTACAGTTCTGTCACTCACTTACACAGTA...GATGGATTTGAAGCCGTCAAAAAGCCTGACTGTTATTACAGCATCGGAAGGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS-3UTR TCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGGGTTCATGGAAGGCATaGTGTGTATCCGGGTACTAT +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKGSWKA*CVSGYY
Trigger: ATAGTACCCGGATACACATCATGCCTTCCATGAACC...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAAACAGTCAGGCTTTTTaGCGGCTTCAAATCCATCTG +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSNSQAF*RLQIHL
Trigger: CAGATGGATTTGAAGCCGTCAAAAAGCCTGACTGTT...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATATGCAGTAACCTGGAGTaGGCAATCCCTGATTCCAGG +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHICSNLE*AIPDSR
Trigger: CCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCA...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
CDS-3UTR TCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTAGGGGCTTTCTTAATTaGCCTGTATGCTTTGAAGCT +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATRGFLN*PVCFEA
Trigger: AGCTTCAAAGCATACAGGTCAATTAAGAAAGCCCCT...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAGGTGGTCCCAGTAATTaGGAGAGAGAATGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIGGPSN*ERECSR
Trigger: CCTGCTGCATTCTCTCTCTCAATTACTGGGACCACC...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTCTTGGGTACCTGGTTTaGCCACAGTTAGAATATCAT +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATLGYLV*PQLEYH
Trigger: ATGATATTCTAACTGTGGTCAAACCAGGTACCCAAG...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATTGCAGTGCAGTGATGTaGTCTTGGCTCACTGCAACC +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYCSAVM*SWLTAT
Trigger: GGTTGCAGTGAGCCAAGATCACATCACTGCACTGCA...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATACAAGGTGTGAGCCACTaGTCCTGGCCTTATGGTGAA +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIQGVSH*SWPYGE
Trigger: TTCACCATAAGGCCAGGAGCAGTGGCTCACACCTTG...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
CDS-3UTR GCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTGCCCAGTTGAAAAATTaGTTGGGGCTTGATAGCAAA +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATAQLKN*LGLDSK
Trigger: TTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp TTCTTGAAGCATAGGTATGTGCAAGATATTGAAAAACATCATCATCAGGCGTTAACGAGGGCACCACCATaGAGGTTTGCAGAGAGGACA +
Preference number: 4 (lower is better)
Translates to: FLKHRYVQDIEKHHHQALTRAPP*RFAERT
Trigger: TGTCCTCTCTGCAAACCTCCATGGTGGTGCCCTCGT...TAACGCCTGATGATGATGTTTTTCAATATCTTGCACATACCTATGCTTCAAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000551728.5
CDS-3UTR CCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGAACACCATTATCAAATaGGTAACTGGCCACGAGGGC +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKNTIIK*VTGHEG
Trigger: GCCCTCGTGGCCAGTTACCCATTTGATAATGGTGTT...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTAACACCATTATCAAATaGGTAACTGGCCACGAGGGC +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFININTIIK*VTGHEG
Trigger: GCCCTCGTGGCCAGTTACCCATTTGATAATGGTGTT...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATGTGAGCCACTGCTCCTaGCCTTATGGTGAAGTCTTG +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYVSHCS*PYGEVL
Trigger: CAAGACTTCACCATAAGGCCAGGAGCAGTGGCTCAC...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATCTTCTTCACCCAGGCTaGAGTACAATGGCGCAATCC +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYLLHPG*STMAQS
Trigger: GGATTGCGCCATTGTACTCCAGCCTGGGTGAAGAAG...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATGTGCTGTGTGGACGATaGACTGAAGAGGAGAAGGCT +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHVLCGR*TEEEKA
Trigger: AGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCAC...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATGCAACCTCTGCCTTCTaGGTTCAGGCGATTTCTCCT +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHATSAF*VQAISP
Trigger: AGGAGAAATCGCCTGAACCCAGAAGGCAGAGGTTGC...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGAACAGTCAGGCTTTTTaGCGGCTTCAAATCCATCTG +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKNSQAF*RLQIHL
Trigger: CAGATGGATTTGAAGCCGTCAAAAAGCCTGACTGTT...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGCTCCTGGCCTTATGGTaGAGTCTTGTATGTAGAAGA +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKLLALW*SLVCRR
Trigger: TCTTCTACATACAAGACTTCACCATAAGGCCAGGAG...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
CDS-3UTR TCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTGAGGTGAAATGGAATTaGATGGGATTATGGTCAGCC +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFINIEVKWN*MGLWSA
Trigger: GGCTGACCATAATCCCATTCAATTCCATTTCACCTC...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAGCAACTCACTTTCCATaGGTAATACACCACACTTCT +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSATHFP*VIHHTS
Trigger: AGAAGTGTGGTGTATTACTCATGGAAAGTGAGTTGC...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATATGAGCCACCGTGCCTaGCTGCTGCTTTCTAAATAC +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHMSHRA*LLLSKY
Trigger: GTATTTAGAAAGCAGCAGTCAGGCACGGTGGCTCAT...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAAATGTGTGGCGGATTTaGATCCAGGGCTTCTGCCTT +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHINVWRI*IQGFCL
Trigger: AAGGCAGAAGCCCTGGATTCAAATCCGCCACACATT...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCACATCTTTCCTCCACCTaGACAAGCACCAAAAATGTA +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSHLSST*TSTKNV
Trigger: TACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATG...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp TTCCCTTCCGATGCTGTAATAACAGTCAGGCTTTTTGACGGCTTCAAATCCATCGCCACAGTTTCAGGCTaGCTTGAGACATTATTATAT +
Preference number: 4 (lower is better)
Translates to: FPSDAVITVRLFDGFKSIATVSG*LETLLY
Trigger: ATATAATAATGTCTCAAGGCAGCCTGAAACTGTGGC...GATGGATTTGAAGCCGTCAAAAAGCCTGACTGTTATTACAGCATCGGAAGGGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS-3UTR GCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATACCACCATGGAGGTTTaGAGAGAGGACAAACGTCTC +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHTTMEV*REDKRL
Trigger: GAGACGTTTGTCCTCTCTGCAAACCTCCATGGTGGT...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR GCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAACCACCATGGAGGTTTaGAGAGAGGACAAACGTCTC +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHITTMEV*REDKRL
Trigger: GAGACGTTTGTCCTCTCTGCAAACCTCCATGGTGGT...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR GCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATACCACCATGGAGGTTTaGAGAGAGGACAAACGTCTC +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYTTMEV*REDKRL
Trigger: GAGACGTTTGTCCTCTCTGCAAACCTCCATGGTGGT...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAGGGATAGAATCCAATTaGCCTTGGAATGGAAGTAGA +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSGIESN*PWNGSR
Trigger: TCTACTTCCATTCCAAGGGCAATTGGATTCTATCCC...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAGGACCAGTAAGCTGTTaGAGCAGTGCAGGTGAGATA +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIGPVSC*SSAGEI
Trigger: TATCTCACCTGCACTGCTGCAACAGCTTACTGGTCC...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAGCCCAGTTGAAAAATTaGTTGGGGCTTGATAGCAAA +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSAQLKN*LGLDSK
Trigger: TTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATACGCAGAAGGAAGAAATaGTGCTCAGAGAGGCCAAGA +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIRRRKK*CSERPR
Trigger: TCTTGGCCTCTCTGAGCAGCATTTCTTCCTTCTGCG...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546373.5
CDS-3UTR CCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATATATCAAATGGGTAACTaGCCACGAGGGCACCACCAT +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIYQMGN*PRGHHH
Trigger: ATGGTGGTGCCCTCGTGGCCAGTTACCCATTTGATA...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCACATTCCACCTTGGAGTaGATACCAAGAGTATCCATT +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSHSTLE*IPRVSI
Trigger: AATGGATACTCTTGGTATCCACTCCAAGGTGGAATG...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAAGGCCTGTATTTTCTTaGGCCACTAAGATGTGGTTA +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSRPVFS*ATKMWL
Trigger: TAACCACATCTTAGTGGCCCAAGAAAATACAGGCCT...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
3UTR CAA 72 bp TGTTGTAAATCCAATAGTAGAGATAACCAGTTTATTTaGGGGAGCAAAGAGAAAGGGTCCCTAACCCCAGAC +
Preference number: 4 (lower is better)
Translates to: CCKSNSRDNQFI*GSKEKGSLTPD
Trigger: GTCTGGGGTTAGGGACCCTTTCTCTTTGCTCCCCAAAATAAACTGGTTATCTCTACTATTGGATTTACAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATGGTTCATGGAAGGCATaGTGTGTATCCGGGTACTAT +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHGSWKA*CVSGYY
Trigger: ATAGTACCCGGATACACATCATGCCTTCCATGAACC...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAGGTGGTGATGTGGGTTaGGTTTCACATTTTACTTTA +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSGGDVG*VSHFTL
Trigger: TAAAGTAAAATGTGAAACTCAACCCACATCACCACC...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCACCTTTAGTTACTTGCTaGATACACAGGATTAAGGAG +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSPLVTC*IHRIKE
Trigger: CTCCTTAATCCTGTGTATTCAGCAAGTAACTAAAGG...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTAATTCAATGCCCAGTTaGAAAATTGCTTGGGGCTTG +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFININSMPS*KIAWGL
Trigger: CAAGCCCCAAGCAATTTTTCAACTGGGCATTGAATT...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTCATCTTTCCTCCACCTaGACAAGCACCAAAAATGTA +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFINIHLSST*TSTKNV
Trigger: TACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATG...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGGGGATAGAATCCAATTaGCCTTGGAATGGAAGTAGA +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKGIESN*PWNGSR
Trigger: TCTACTTCCATTCCAAGGGCAATTGGATTCTATCCC...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR GCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGCGTTCTCACTCTCCATaGCAGTATGTCTCATTTCTA +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKRSHSP*QYVSFL
Trigger: TAGAAATGAGACATACTGGCATGGAGAGTGAGAACG...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTACCGTGCCTGACTGCTaGTTTCTAAATACCATTTCA +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFINITVPDC*FLNTIS
Trigger: TGAAATGGTATTTAGAAAGCAGCAGTCAGGCACGGT...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAACACCATTATCAAATaGGTAACTGGCCACGAGGGC +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHNTIIK*VTGHEG
Trigger: GCCCTCGTGGCCAGTTACCCATTTGATAATGGTGTT...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTCATTCCACCTTGGAGTaGATACCAAGAGTATCCATT +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFINIHSTLE*IPRVSI
Trigger: AATGGATACTCTTGGTATCCACTCCAAGGTGGAATG...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGTCTTGCATTCCACCTTaGAGTGGATACCAAGAGTAT +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKSCIPP*SGYQEY
Trigger: ATACTCTTGGTATCCACTCCAAGGTGGAATGCAAGA...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATCACCTTTGTGATGTGTaGATCATGTCCAGGGACTGT +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHHLCDV*IMSRDC
Trigger: ACAGTCCCTGGACATGATCCACACATCACAAAGGTG...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTAGAGCACTGAAGTTCTaGGATTTCTCCGGAATAATC +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFINIRALKF*DFSGII
Trigger: GATTATTCCGGAGAAATCCCAGAACTTCAGTGCTCT...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCATGGGCCACTAAGATGTaGTTACATATTTTCTCTCAC +
Preference number: 4 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSWATKM*LHIFSH
Trigger: GTGAGAGAAAATATGTAACCACATCTTAGTGGCCCA...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGTATTTGCCACGTATTTaGACTCTGGAATCCCAATTC +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKYLPRI*TLESQF
Trigger: GAATTGGGATTCCAGAGTTCAAATACGTGGCAAATA...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAACAGTCAGGCTTTTTaGCGGCTTCAAATCCATCTG +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHNSQAF*RLQIHL
Trigger: CAGATGGATTTGAAGCCGTCAAAAAGCCTGACTGTT...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGGGTGGTGATGTGGGTTaGGTTTCACATTTTACTTTA +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKGGDVG*VSHFTL
Trigger: TAAAGTAAAATGTGAAACTCAACCCACATCACCACC...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
CDS-3UTR TCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGTTGACCTGTATGCTTTaGAGCTCTATAGAGACACAA +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKLTCML*SSIETQ
Trigger: TTGTGTCTCTATAGAGCTTCAAAGCATACAGGTCAA...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATGAGGTGAAATGGAATTaGATGGGATTATGGTCAGCC +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYEVKWN*MGLWSA
Trigger: GGCTGACCATAATCCCATTCAATTCCATTTCACCTC...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATACCTAGCTTCATAAAATaGCTCAAAGCCCTAGGCAGT +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIPSFIK*LKALGS
Trigger: ACTGCCTAGGGCTTTGAGTCATTTTATGAAGCTAGG...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTAATTTTCCCTTCCGATaGTGTAATAACAGTCAGGCT +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFININFPFR*CNNSQA
Trigger: AGCCTGACTGTTATTACAGCATCGGAAGGGAAAATT...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATATGAGGCCTCAACTCTaGAGTGTTGACAACCATAGA +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYMRPQL*SVDNHR
Trigger: TCTATGGTTGTCAACACTGCAGAGTTGAGGCCTCAT...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATATGAGGCCTCAACTCTaGAGTGTTGACAACCATAGA +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHMRPQL*SVDNHR
Trigger: TCTATGGTTGTCAACACTGCAGAGTTGAGGCCTCAT...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTATCATCTATTGCTGCTaGACAAATTACCAGATTTCA +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATIIYCC*TNYQIS
Trigger: TGAAATCTGGTAATTTGTGCAGCAGCAATAGATGAT...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAATTCTGTGTTCCTTTaGAAACCGCCCCACAACAAG +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHNSVFL*KPPHNK
Trigger: CTTGTTGTGGGGCGGTTTCCAAAGGAACACAGAATT...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp TTCTTGAAGCATAGGTATGTGCAAGATATTGAAAAACATCATCATCAGGCGTTAAACACCATTATCAAATaGGTAACTGGCCACGAGGGC +
Preference number: 4 (lower is better)
Translates to: FLKHRYVQDIEKHHHQALNTIIK*VTGHEG
Trigger: GCCCTCGTGGCCAGTTACCCATTTGATAATGGTGTT...TAACGCCTGATGATGATGTTTTTCAATATCTTGCACATACCTATGCTTCAAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000551728.5
CDS-3UTR CCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTCTTCCACAATTACATTaGGTAATGGATTTCCATTCT +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATLPQLH*VMDFHS
Trigger: AGAATGGAAATCCATTACCCAATGTAATTGTGGAAG...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTAAATTAAATAGACCTTaGCCTCAAAGAGCTCACATT +
Preference number: 4 (lower is better)
Translates to: SSIETQSYPFRPVFSWATKLNRP*PQRAHI
Trigger: AATGTGAGCTCTTTGAGGCCAAGGTCTATTTAATTT...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATTACTGTGTAAGTGAGTaGCAGAACTGTAGTTTTGGG +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYYCVSE*QNCSFG
Trigger: CCCAAAACTACAGTTCTGTCACTCACTTACACAGTA...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATTACTGTGTAAGTGAGTaGCAGAACTGTAGTTTTGGG +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHYCVSE*QNCSFG
Trigger: CCCAAAACTACAGTTCTGTCACTCACTTACACAGTA...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATGCAACTCACTTTCCATaGGTAATACACCACACTTCT +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYATHFP*VIHHTS
Trigger: AGAAGTGTGGTGTATTACTCATGGAAAGTGAGTTGC...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATCTTGGGTACCTGGTTTaGCCACAGTTAGAATATCAT +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYLGYLV*PQLEYH
Trigger: ATGATATTCTAACTGTGGTCAAACCAGGTACCCAAG...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATAAAAGGAATTATAGCTaGACTAGAGCTGGAGGAGCA +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYKRNYS*TRAGGA
Trigger: TGCTCCTCCAGCTCTAGTTCAGCTATAATTCCTTTT...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAAAAGGAATTATAGCTaGACTAGAGCTGGAGGAGCA +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHKRNYS*TRAGGA
Trigger: TGCTCCTCCAGCTCTAGTTCAGCTATAATTCCTTTT...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp AGCATCGGGGAAATTTCGATTCAAGTCATACTGGTTATAATTTTCCCTTCCGATGCCACAGTTTCAGGCTaGCTTGAGACATTATTATAT +
Preference number: 4 (lower is better)
Translates to: SIGEISIQVILVIIFPSDATVSG*LETLLY
Trigger: ATATAATAATGTCTCAAGGCAGCCTGAAACTGTGGC...ATCGGAAGGGAAAATTATAACCAGTATGACTTGAATCGAAATTTCCCCGATGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS-3UTR GCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATGGGATAGAATCCAATTaGCCTTGGAATGGAAGTAGA +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYGIESN*PWNGSR
Trigger: TCTACTTCCATTCCAAGGGCAATTGGATTCTATCCC...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATCGTTCTCACTCTCCATaGCAGTATGTCTCATTTCTA +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYRSHSP*QYVSFL
Trigger: TAGAAATGAGACATACTGGCATGGAGAGTGAGAACG...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGTTGGTTATCATCTATTaGTGCTGCACAAATTACCAG +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKLVIIY*CCTNYQ
Trigger: CTGGTAATTTGTGCAGCAGCAATAGATGATAACCAA...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATGGTCTTTGCCATCACTaGTTACGAGATAGTCAATCA +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYGLCHH*LRDSQS
Trigger: TGATTGACTATCTCGTAACCAGTGATGGCAAAGACC...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAGGTCTTTGCCATCACTaGTTACGAGATAGTCAATCA +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIGLCHH*LRDSQS
Trigger: TGATTGACTATCTCGTAACCAGTGATGGCAAAGACC...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATCATTCCACCTTGGAGTaGATACCAAGAGTATCCATT +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHHSTLE*IPRVSI
Trigger: AATGGATACTCTTGGTATCCACTCCAAGGTGGAATG...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATTCTTGCATTCCACCTTaGAGTGGATACCAAGAGTAT +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHSCIPP*SGYQEY
Trigger: ATACTCTTGGTATCCACTCCAAGGTGGAATGCAAGA...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTATAACCAGTTTATTTTaGGGAGCAAAGAGAAAGGGT +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFINIITSLF*GAKRKG
Trigger: ACCCTTTCTCTTTGCTCCCCAAAATAAACTGGTTAT...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATATATTTGCCACGTATTTaGACTCTGGAATCCCAATTC +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIYLPRI*TLESQF
Trigger: GAATTGGGATTCCAGAGTTCAAATACGTGGCAAATA...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATTATTTGCCACGTATTTaGACTCTGGAATCCCAATTC +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHYLPRI*TLESQF
Trigger: GAATTGGGATTCCAGAGTTCAAATACGTGGCAAATA...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAAGGATATTTACAGCATaGCAGCTCCAACGTAATTTC +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIRIFTA*QLQRNF
Trigger: GAAATTACGTTGGAGCTGTCATGCTGTAAATATCCT...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR TCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATAGGATATTTACAGCATaGCAGCTCCAACGTAATTTC +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYRIFTA*QLQRNF
Trigger: GAAATTACGTTGGAGCTGTCATGCTGTAAATATCCT...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATGGTGGTGATGTGGGTTaGGTTTCACATTTTACTTTA +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHGGDVG*VSHFTL
Trigger: TAAAGTAAAATGTGAAACTCAACCCACATCACCACC...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
CDS-3UTR TCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAGGTGGTGATGTGGGTTaGGTTTCACATTTTACTTTA +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIGGDVG*VSHFTL
Trigger: TAAAGTAAAATGTGAAACTCAACCCACATCACCACC...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
CDS-3UTR TCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATTTGACCTGTATGCTTTaGAGCTCTATAGAGACACAA +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYLTCML*SSIETQ
Trigger: TTGTGTCTCTATAGAGCTTCAAAGCATACAGGTCAA...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR TCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATACTACAACCAGTTGTTaGCTTTTGTTTCAAGTGGCT +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYTTTSC*LLFQVA
Trigger: AGCCACTTGAAACAAAAGTCAACAACTGGTTGTAGT...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATACAGTCTCATCTCCATaGATATTTGCCACGTATTTG +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHTVSSP*IFATYL
Trigger: CAAATACGTGGCAAATATGCATGGAGATGAGACTGT...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR GCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATACAGTCTCATCTCCATaGATATTTGCCACGTATTTG +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYTVSSP*IFATYL
Trigger: CAAATACGTGGCAAATATGCATGGAGATGAGACTGT...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAAATTTTCCCTTCCGATaGTGTAATAACAGTCAGGCT +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHINFPFR*CNNSQA
Trigger: AGCCTGACTGTTATTACAGCATCGGAAGGGAAAATT...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR GCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATGCCACAGTTTCAGGCTaGCTTGAGACATTATTATAT +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHATVSG*LETLLY
Trigger: ATATAATAATGTCTCAAGGCAGCCTGAAACTGTGGC...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR GCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAGCCACAGTTTCAGGCTaGCTTGAGACATTATTATAT +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIATVSG*LETLLY
Trigger: ATATAATAATGTCTCAAGGCAGCCTGAAACTGTGGC...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR GCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATACCCTTTACACCTAGGTaGACCTGCTTTATATATTCA +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIPFTPR*TCFIYS
Trigger: TGAATATATAAAGCAGGTGCACCTAGGTGTAAAGGG...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR GCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATCCCTTTACACCTAGGTaGACCTGCTTTATATATTCA +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYPFTPR*TCFIYS
Trigger: TGAATATATAAAGCAGGTGCACCTAGGTGTAAAGGG...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTGTTATCATCTATTGCTaGTGCACAAATTACCAGATT +
Preference number: 4 (lower is better)
Translates to: QLCSVDNHREQRAEFINIVIIYC*CTNYQI
Trigger: AATCTGGTAATTTGTGCAGCAGCAATAGATGATAAC...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATACTAGAGTTACATCTTTaGAGTCATCAGCCTAATGGA +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHILELHL*SHQPNG
Trigger: TCCATTAGGCTGATGACTCCAAAGATGTAACTCTAG...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGAAATTAAATAGACCTTaGCCTCAAAGAGCTCACATT +
Preference number: 4 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKKLNRP*PQRAHI
Trigger: AATGTGAGCTCTTTGAGGCCAAGGTCTATTTAATTT...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATACTATGCTTATCTTTCTaGATTCCCCAGGAAGAGATA +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHILCLSF*IPQEEI
Trigger: TATCTCTTCCTGGGGAATCCAGAAAGATAAGCATAG...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR GCA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAGAAAGGAAAGAAATCTaGTCACCAGAGTTGCTATTT +
Preference number: 4 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIERKEI*SPELLF
Trigger: AAATAGCAACTCTGGTGAGCAGATTTCTTTCCTTTC...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATACTCTCCATATTTGTTaGTTCTATAGGGGCAGATAT +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHTLHIC*FYRGRY
Trigger: ATATCTGCCCCTATAGAACCAACAAATATGGAGAGT...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CCA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATATAACCAGTTTATTTTaGGGAGCAAAGAGAAAGGGT +
Preference number: 4 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYITSLF*GAKRKG
Trigger: ACCCTTTCTCTTTGCTCCCCAAAATAAACTGGTTAT...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CCA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATCTTCCACAATTACATTaGGTAATGGATTTCCATTCT +
Preference number: 4 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHLPQLH*VMDFHS
Trigger: AGAATGGAAATCCATTACCCAATGTAATTGTGGAAG...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAGTGATTTCAGGGTCTTaGCCATCACTGGTTACGAGA +
Preference number: 5 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGAVISGS*PSLVTR
Trigger: TCTCGTAACCAGTGATGGCAAAGACCCTGAAATCAC...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS TCA 90 bp CAACAGTCTTCAAAAACGCTTCCATCCCTTCCTGGCGGTGGTAGTTaGAATCCAGCGCAGCTACCAAAGGCAGCAACAGCCCTAGCCAGA +
Preference number: 5 (lower is better)
Translates to: QQSSKTLPSLPGGGS*NPAQLPKAATALAR
Trigger: TCTGGCTAGGGCTGTTGCTGCCTTTGGTAGCTGCGCTGGATTTCAACTACCACCGCCAGGAAGGGATGGAAGCGTTTTTGAAGACTGTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000547134.5
ENST00000547924.1
ENST00000548262.5
ENST00000548954.5
ENST00000549781.1
ENST00000551568.6
ENST00000551728.5
CDS-3UTR CAA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAAGAGGTGAAATGGAATaGAATGGGATTATGGTCAGC +
Preference number: 5 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGARGEME*NGIMVS
Trigger: GCTGACCATAATCCCATTCAATTCCATTTCACCTCT...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAAGTATAATGCCCCAGTaGCTTGAACACCATTATCAA +
Preference number: 5 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGASIMPQ*LEHHYQ
Trigger: TTGATAATGGTGTTCAAGCAACTGGGGCATTATACT...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCATCATGTTGGGATTTCTaGAAGCATAGGTATGTGCAA +
Preference number: 5 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGASCWDF*KHRYVQ
Trigger: TTGCACATACCTATGCTTCAAGAAATCCCAACATGA...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGTCCCAGGTTCCTAGCTaGGTGGTCCCAGTAATTGAG +
Preference number: 5 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVSQVPS*VVPVIE
Trigger: CTCAATTACTGGGACCACCAAGCTAGGAACCTGGGA...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCAAACTACAACCAGTTGTaGACTTTTGTTTCAAGTGGC +
Preference number: 5 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGANYNQL*TFVSSG
Trigger: GCCACTTGAAACAAAAGTCAACAACTGGTTGTAGTT...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCACTCATAGTGGAGAACTaGAGAAGCATTAGTACTTCA +
Preference number: 5 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGALIVEN*RSISTS
Trigger: TGAAGTACTAATGCTTCTCAAGTTCTCCACTATGAG...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp CCCCTTCCCCAGTGCTGTGTGGACGATGGACTGAAGAGGAGAAGGCTGGGAGCATGTATAGAGGAATCATaGGGCATGAAGGATTTGATA +
Preference number: 5 (lower is better)
Translates to: PLPQCCVDDGLKRRRLGACIEES*GMKDLI
Trigger: TATCAAATCCTTCATGCCCAATGATTCCTCTATACA...TGCTCCCAGCCTTCTCCTCTTCAGTCCATCGTCCACACAGCACTGGGGAAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTAAAGCCGGAAAGGCGTaGGGCAGGGAGGTGGCTTGG +
Preference number: 5 (lower is better)
Translates to: QLCSVDNHREQRAEFINIKAGKA*GREVAW
Trigger: CCAAGCCACCTCCCTGCCCAACGCCTTTCCGGCTTT...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGATCTTGCATTCCACCTaGGAGTGGATACCAAGAGTA +
Preference number: 5 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVILHST*EWIPRV
Trigger: TACTCTTGGTATCCACTCCAAGGTGGAATGCAAGAT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGGCTTGGGTACCTGGTTaGACCACAGTTAGAATATCA +
Preference number: 5 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVAWVPG*TTVRIS
Trigger: TGATATTCTAACTGTGGTCAAACCAGGTACCCAAGC...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAAAAGCCGGAAAGGCGTaGGGCAGGGAGGTGGCTTGG +
Preference number: 5 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIKAGKA*GREVAW
Trigger: CCAAGCCACCTCCCTGCCCAACGCCTTTCCGGCTTT...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGAGTATAATGCCCCAGTaGCTTGAACACCATTATCAA +
Preference number: 5 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVSIMPQ*LEHHYQ
Trigger: TTGATAATGGTGTTCAAGCAACTGGGGCATTATACT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGTCATGTTGGGATTTCTaGAAGCATAGGTATGTGCAA +
Preference number: 5 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVSCWDF*KHRYVQ
Trigger: TTGCACATACCTATGCTTCAAGAAATCCCAACATGA...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGCAGTTGAAAAATTGCTaGGGGCTTGATAGCAAATCA +
Preference number: 5 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVQLKNC*GLDSKS
Trigger: TGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTG...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCAGAATGTGTGGCGGATTaGAATCCAGGGCTTCTGCCT +
Preference number: 5 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSECVAD*NPGLLP
Trigger: AGGCAGAAGCCCTGGATTCAAATCCGCCACACATTC...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATGCAAAGGAACGCAGCTaGGCCTCCCAAAGTGCTGGG +
Preference number: 5 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHAKERS*ASQSAG
Trigger: CCCAGCACTTTGGGAGGCCAAGCTGCGTTCCTTTGC...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546556.1
CDS CCA 90 bp ATTTGCCACGTATTTGAACTCTGGAATCCCAATTCTGTGTTCCTTTaGAAACCGCCCCACAACAAGAACCCACAGGTTTCTACCTTTCAC +
Preference number: 5 (lower is better)
Translates to: ICHVFELWNPNSVFL*KPPHNKNPQVSTFH
Trigger: GTGAAAGGTAGAAACCTGTGGGTTCTTGTTGTGGGGCGGTTTCCAAAGGAACACAGAATTGGGATTCCAGAGTTCAAATACGTGGCAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000548262.5
ENST00000548954.5
ENST00000551568.6
CDS-3UTR CAA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGATATTTGCCACGTATTaGAACTCTGGAATCCCAATT +
Preference number: 5 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVIFATY*NSGIPI
Trigger: AATTGGGATTCCAGAGTTCAAATACGTGGCAAATAT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp GTTAGGGTTGCAGTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGACTTCCACAATTACATaGGGTAATGGATTTCCATTC +
Preference number: 5 (lower is better)
Translates to: VRVAVTWSEQSLIPGGDVTSTIT*GNGFPF
Trigger: GAATGGAAATCCATTACCCAATGTAATTGTGGAAGT...CACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTACTGCAACCCTAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTGTCTCCTGGCACCCCTaGTTCATTCATTCATTCAGT +
Preference number: 5 (lower is better)
Translates to: SSIETQSYPFRPVFSWATVSWHP*FIHSFS
Trigger: ACTGAATGAATGAATGAACAAGGGGTGCCAGGAGAC...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGGAATGTGTGGCGGATTaGAATCCAGGGCTTCTGCCT +
Preference number: 5 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKECVAD*NPGLLP
Trigger: AGGCAGAAGCCCTGGATTCAAATCCGCCACACATTC...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS TCA 90 bp CCGCCCAACAGTCTTTCACAGATTTCCCAATACTGTGTAAGTGAGTaGCAGAACTGTAGTTTTGGGCAACAGTCTTCAAAAACGCTTCCA +
Preference number: 5 (lower is better)
Translates to: PPNSLSQISQYCVSE*QNCSFGQQSSKTLP
Trigger: TGGAAGCGTTTTTGAAGACTGTTGCCCAAAACTACAGTTCTGTCACTCACTTACACAGTATTGGGAAATCTGTGAAAGACTGTTGGGCGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS CCA 90 bp ATTTGCCACGTATTTGAACTCTGGAATCCCAATTCTGTGTTCCTTTaGAAACCGCCCCACAACAAGAACCCACAGGTTTCTTTCACAGAT +
Preference number: 5 (lower is better)
Translates to: ICHVFELWNPNSVFL*KPPHNKNPQVSFTD
Trigger: ATCTGTGAAAGAAACCTGTGGGTTCTTGTTGTGGGGCGGTTTCCAAAGGAACACAGAATTGGGATTCCAGAGTTCAAATACGTGGCAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000547924.1
CDS-3UTR CAA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTGATGTAGTTGTAATCTaGCATTCCACCTTGGAGTGG +
Preference number: 5 (lower is better)
Translates to: SSIETQSYPFRPVFSWATDVVVI*HSTLEW
Trigger: CCACTCCAAGGTGGAATGCAAGATTACAACTACATC...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS TCA 90 bp ATTCCAAAAGGATGGAAGCTTCTCCTCACGAGGATATTTACAGCATaGCAGCTCCAACGTAATTTCAAAACACTGGGCCCAGATGTAGTT +
Preference number: 5 (lower is better)
Translates to: IPKGWKLLLTRIFTA*QLQRNFKTLGPDVV
Trigger: AACTACATCTGGGCCCAGTGTTTTGAAATTACGTTGGAGCTGTCATGCTGTAAATATCCTCGTGAGGAGAAGCTTCCATCCTTTTGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546912.1
ENST00000551568.6
ENST00000551897.5
CDS-3UTR CAA 90 bp CATCAGGCGTTAAGCTTCGGGAGTATAATGCCCCAGTTGCTTGAACACCATTATTCATGTTGGGATTTCTaGAAGCATAGGTATGTGCAA +
Preference number: 5 (lower is better)
Translates to: HQALSFGSIMPQLLEHHYSCWDF*KHRYVQ
Trigger: TTGCACATACCTATGCTTCAAGAAATCCCAACATGA...ATAATGGTGTTCAAGCAACTGGGGCATTATACTCCCGAAGCTTAACGCCTGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551728.5
CDS-3UTR CAA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATTCCCAGGTTCCTAGCTaGGTGGTCCCAGTAATTGAG +
Preference number: 5 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYSQVPS*VVPVIE
Trigger: CTCAATTACTGGGACCACCAAGCTAGGAACCTGGGA...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGCTCAACTCTGCAGTGTaGACAACCATAGAGAGCAGA +
Preference number: 5 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKLNSAV*TTIESR
Trigger: TCTGCTCTCTATGGTTGTCAACACTGCAGAGTTGAG...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS TCA 90 bp ACCCACAGGTTTCTTTCACAGATTTCCCAATACTGTGTAAGTGAGTaGCAGAACTGTAGTTTTGGGCAACAGTCTTCAAAAACGCTTCCA +
Preference number: 5 (lower is better)
Translates to: THRFLSQISQYCVSE*QNCSFGQQSSKTLP
Trigger: TGGAAGCGTTTTTGAAGACTGTTGCCCAAAACTACAGTTCTGTCACTCACTTACACAGTATTGGGAAATCTGTGAAAGAAACCTGTGGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000547924.1
ENST00000549781.1
CDS-3UTR CAA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGATCTTGCATTCCACCTaGGAGTGGATACCAAGAGTA +
Preference number: 5 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKILHST*EWIPRV
Trigger: TACTCTTGGTATCCACTCCAAGGTGGAATGCAAGAT...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGGATGTAGTTGTAATCTaGCATTCCACCTTGGAGTGG +
Preference number: 5 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKDVVVI*HSTLEW
Trigger: CCACTCCAAGGTGGAATGCAAGATTACAACTACATC...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTGTAAATGAGCAGTACTaGTTAGGTAAGTGTCTTCCA +
Preference number: 5 (lower is better)
Translates to: SSIETQSYPFRPVFSWATVNEQY*LGKCLP
Trigger: TGGAAGACACTTACCTAACAAGTACTGCTCATTTAC...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTATTGACCTGTATGCTTaGAAGCTCTATAGAGACACA +
Preference number: 5 (lower is better)
Translates to: SSIETQSYPFRPVFSWATIDLYA*KLYRDT
Trigger: TGTGTCTCTATAGAGCTTCAAAGCATACAGGTCAAT...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS TCA 90 bp ACAGGTTTCTACCTTTCACAGATTTCCCAATACTGTGTAAGTGAGTaGCAGAACTGTAGTTTTGGGCAACAGTCTTCAAAAACGCTTCCA +
Preference number: 5 (lower is better)
Translates to: TGFYLSQISQYCVSE*QNCSFGQQSSKTLP
Trigger: TGGAAGCGTTTTTGAAGACTGTTGCCCAAAACTACAGTTCTGTCACTCACTTACACAGTATTGGGAAATCTGTGAAAGGTAGAAACCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000548262.5
ENST00000548954.5
ENST00000551568.6
CDS CCA 90 bp ACTGAAGTTCTGGGATTTCTCCGGAATAATCACCTTTGTGATGTGTaGATCATGTCCAGGGACTGTAACATTTATTATATAAGACCCAGG +
Preference number: 5 (lower is better)
Translates to: TEVLGFLRNNHLCDV*IMSRDCNIYYIRPR
Trigger: CCTGGGTCTTATATAATAAATGTTACAGTCCCTGGACATGATCCACACATCACAAAGGTGATTATTCCGGAGAAATCCCAGAACTTCAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAGTGATTTCAGGGTCTTaGCCATCACTGGTTACGAGA +
Preference number: 5 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIVISGS*PSLVTR
Trigger: TCTCGTAACCAGTGATGGCAAAGACCCTGAAATCAC...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp AGCTCTATAGAGACACAATCTTATCCCTTCAGGCCTGTATTTTCTTGGGCCACTACTTCCACAATTACATaGGGTAATGGATTTCCATTC +
Preference number: 5 (lower is better)
Translates to: SSIETQSYPFRPVFSWATTSTIT*GNGFPF
Trigger: GAATGGAAATCCATTACCCAATGTAATTGTGGAAGT...AGTGGCCCAAGAAAATACAGGCCTGAAGGGATAAGATTGTGTCTCTATAGAGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATACTCAACTCTGCAGTGTaGACAACCATAGAGAGCAGA +
Preference number: 5 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHILNSAV*TTIESR
Trigger: TCTGCTCTCTATGGTTGTCAACACTGCAGAGTTGAG...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTAGAGGTGAAATGGAATaGAATGGGATTATGGTCAGC +
Preference number: 5 (lower is better)
Translates to: QLCSVDNHREQRAEFINIRGEME*NGIMVS
Trigger: GCTGACCATAATCCCATTCAATTCCATTTCACCTCT...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTGATAACCAGTTTATTTaGGGGAGCAAAGAGAAAGGG +
Preference number: 5 (lower is better)
Translates to: QLCSVDNHREQRAEFINIDNQFI*GSKEKG
Trigger: CCCTTTCTCTTTGCTCCCCAAAATAAACTGGTTATC...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATGTCTCCTGGCACCCCTaGTTCATTCATTCATTCAGT +
Preference number: 5 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYVSWHP*FIHSFS
Trigger: ACTGAATGAATGAATGAACAAGGGGTGCCAGGAGAC...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp TCATCTTTCCTCCACCTGAACAAGCACCAAAAATGTAGCATCTCTTACCAGTCACTCATAGTGGAGAACTaGAGAAGCATTAGTACTTCA +
Preference number: 5 (lower is better)
Translates to: SSFLHLNKHQKCSISYQSLIVEN*RSISTS
Trigger: TGAAGTACTAATGCTTCTCAAGTTCTCCACTATGAG...TGACTGGTAAGAGATGCTACATTTTTGGTGCTTGTTCAGGTGGAGGAAAGATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS TCA 90 bp GTAACCTGGAGTGAGCAATCCCTGATTCCAGGTGGTGATGTGGGTTaGGTTTCACATTTTACTTTATTTGAAGAATATGTGCAAAAGACT +
Preference number: 5 (lower is better)
Translates to: VTWSEQSLIPGGDVG*VSHFTLFEEYVQKT
Trigger: AGTCTTTTGCACATATTCTTCAAATAAAGTAAAATGTGAAACTCAACCCACATCACCACCTGGAATCAGGGATTGCTCACTCCAGGTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
CDS GCA 90 bp GGAATCATTGGGCATGAAGGATTTGATACTGGGATAGAATCCAATTaGCCTTGGAATGGAAGTAGAATATCCTTTTTAAGAGCACTGAAG +
Preference number: 5 (lower is better)
Translates to: GIIGHEGFDTGIESN*PWNGSRISFLRALK
Trigger: CTTCAGTGCTCTTAAAAAGGATATTCTACTTCCATTCCAAGGGCAATTGGATTCTATCCCAGTATCAAATCCTTCATGCCCAATGATTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTAGTATAATGCCCCAGTaGCTTGAACACCATTATCAA +
Preference number: 5 (lower is better)
Translates to: QLCSVDNHREQRAEFINISIMPQ*LEHHYQ
Trigger: TTGATAATGGTGTTCAAGCAACTGGGGCATTATACT...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGTCATGTTGGGATTTCTaGAAGCATAGGTATGTGCAA +
Preference number: 5 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKSCWDF*KHRYVQ
Trigger: TTGCACATACCTATGCTTCAAGAAATCCCAACATGA...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAATCTTGCATTCCACCTaGGAGTGGATACCAAGAGTA +
Preference number: 5 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIILHST*EWIPRV
Trigger: TACTCTTGGTATCCACTCCAAGGTGGAATGCAAGAT...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATGATGTAGTTGTAATCTaGCATTCCACCTTGGAGTGG +
Preference number: 5 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYDVVVI*HSTLEW
Trigger: CCACTCCAAGGTGGAATGCAAGATTACAACTACATC...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGGTAAATGAGCAGTACTaGTTAGGTAAGTGTCTTCCA +
Preference number: 5 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKVNEQY*LGKCLP
Trigger: TGGAAGACACTTACCTAACAAGTACTGCTCATTTAC...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
CDS-3UTR CAA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGAACTACAACCAGTTGTaGACTTTTGTTTCAAGTGGC +
Preference number: 5 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKNYNQL*TFVSSG
Trigger: GCCACTTGAAACAAAAGTCAACAACTGGTTGTAGTT...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGCAGTTGAAAAATTGCTaGGGGCTTGATAGCAAATCA +
Preference number: 5 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKQLKNC*GLDSKS
Trigger: TGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTG...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATGCTTGGGTACCTGGTTaGACCACAGTTAGAATATCA +
Preference number: 5 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHAWVPG*TTVRIS
Trigger: TGATATTCTAACTGTGGTCAAACCAGGTACCCAAGC...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGATATTTGCCACGTATTaGAACTCTGGAATCCCAATT +
Preference number: 5 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKIFATY*NSGIPI
Trigger: AATTGGGATTCCAGAGTTCAAATACGTGGCAAATAT...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp ACTATTGATCAGATTTGTGATTTCAGGGTCTTTGCCATCACTGGTTACGAGATAAGTATAATGCCCCAGTaGCTTGAACACCATTATCAA +
Preference number: 5 (lower is better)
Translates to: TIDQICDFRVFAITGYEISIMPQ*LEHHYQ
Trigger: TTGATAATGGTGTTCAAGCAACTGGGGCATTATACT...TATCTCGTAACCAGTGATGGCAAAGACCCTGAAATCACAAATCTGATCAATAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551728.5
CDS-3UTR CAA 90 bp TTGAGTGTAAATGAGCAGTACTTGTTAGGTAAGTGTCTTCCATTCACCGTCAAGTGTATAGAGGAATCATaGGGCATGAAGGATTTGATA +
Preference number: 5 (lower is better)
Translates to: LSVNEQYLLGKCLPFTVKCIEES*GMKDLI
Trigger: TATCAAATCCTTCATGCCCAATGATTCCTCTATACA...CTTGACGGTGAATGGAAGACACTTACCTAACAAGTACTGCTCATTTACACTCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATGATAACCAGTTTATTTaGGGGAGCAAAGAGAAAGGG +
Preference number: 5 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYDNQFI*GSKEKG
Trigger: CCCTTTCTCTTTGCTCCCCAAAATAAACTGGTTATC...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp CAACTCTGCAGTGTTGACAACCATAGAGAGCAGAGAGCAGAATTCATCAATATTTTTGGTTATCATCTATaGCTGCTGCACAAATTACCA +
Preference number: 5 (lower is better)
Translates to: QLCSVDNHREQRAEFINIFGYHL*LLHKLP
Trigger: TGGTAATTTGTGCAGCAGCAATAGATGATAACCAAA...AATATTGATGAATTCTGCTCTCTGCTCTCTATGGTTGTCAACACTGCAGAGTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAGAATTCAATGCCCAGTaGAAAAATTGCTTGGGGCTT +
Preference number: 5 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIEFNAQ*KNCLGL
Trigger: AAGCCCCAAGCAATTTTTCAACTGGGCATTGAATTC...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAGTAAATGAGCAGTACTaGTTAGGTAAGTGTCTTCCA +
Preference number: 5 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIVNEQY*LGKCLP
Trigger: TGGAAGACACTTACCTAACAAGTACTGCTCATTTAC...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
CDS-3UTR CAA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATGTAAATGAGCAGTACTaGTTAGGTAAGTGTCTTCCA +
Preference number: 5 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHVNEQY*LGKCLP
Trigger: TGGAAGACACTTACCTAACAAGTACTGCTCATTTAC...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
CDS-3UTR CAA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATATTGACCTGTATGCTTaGAAGCTCTATAGAGACACA +
Preference number: 5 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYIDLYA*KLYRDT
Trigger: TGTGTCTCTATAGAGCTTCAAAGCATACAGGTCAAT...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAATATTTGCCACGTATTaGAACTCTGGAATCCCAATT +
Preference number: 5 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHIIFATY*NSGIPI
Trigger: AATTGGGATTCCAGAGTTCAAATACGTGGCAAATAT...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATACTTCCACAATTACATaGGGTAATGGATTTCCATTC +
Preference number: 5 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYTSTIT*GNGFPF
Trigger: GAATGGAAATCCATTACCCAATGTAATTGTGGAAGT...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATATGTATAGAGGAATCATaGGGCATGAAGGATTTGATA +
Preference number: 5 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHICIEES*GMKDLI
Trigger: TATCAAATCCTTCATGCCCAATGATTCCTCTATACA...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS-3UTR CAA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATACCACATATTGCTTATaGTGGAATTTGGAAACATCC +
Preference number: 5 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHTTYCL*WNLETS
Trigger: GGATGTTTCCAAATTCCACAATAAGCAATATGTGGT...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
CDS-3UTR CAA 90 bp AGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAACCACATATTGCTTATaGTGGAATTTGGAAACATCC +
Preference number: 5 (lower is better)
Translates to: SVFHSPSRLNHSFHYHHITTYCL*WNLETS
Trigger: GGATGTTTCCAAATTCCACAATAAGCAATATGTGGT...TATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546556.1
ENST00000551568.6
CDS-3UTR CAA 90 bp GCCCAGTTGAAAAATTGCTTGGGGCTTGATAGCAAATCAAGTTTCATCTTATATTTTGGTTATCATCTATaGCTGCTGCACAAATTACCA +
Preference number: 5 (lower is better)
Translates to: AQLKNCLGLDSKSSFILYFGYHL*LLHKLP
Trigger: TGGTAATTTGTGCAGCAGCAATAGATGATAACCAAA...ATATAAGATGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTTTCAACTGGGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS-3UTR CAA 90 bp AAGTGTCTTCCATTCACCGTCAAGACTGAATCATTCTTTTCATTATCACCACATAAAATTGCTTGGGGCTaGATAGCAAATCAAGTTTCA +
Preference number: 5 (lower is better)
Translates to: KCLPFTVKTESFFSLSPHKIAWG*IANQVS
Trigger: TGAAACTTGATTTGCTATCAAGCCCCAAGCAATTTT...ATGTGGTGATAATGAAAAGAATGATTCAGTCTTGACGGTGAATGGAAGACACTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000338356.7
ENST00000551568.6
CDS TCA 72 bp TCAAAAACGCTTCCATCCCTTCCTGGCGGTGGTAGTTaGAATCCAGCGCAGCTACCAAAGGCAGCAACAGCC +
Preference number: 6 (lower is better)
Translates to: SKTLPSLPGGGS*NPAQLPKAATA
Trigger: GGCTGTTGCTGCCTTTGGTAGCTGCGCTGGATTTCAACTACCACCGCCAGGAAGGGATGGAAGCGTTTTTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000547134.5
ENST00000547924.1
ENST00000548262.5
ENST00000548954.5
ENST00000549781.1
ENST00000551568.6
ENST00000551728.5
CDS CAA 90 bp GCAGCAACAGCCCTAGCCAGAGGCACGGGAAGTCCATGTTCTTGTTaGATTGTAGGTCATAAGACCCCCATTCCAGAAAGGGTCCTGTCC +
Preference number: 6 (lower is better)
Translates to: AATALARGTGSPCSC*IVGHKTPIPERVLS
Trigger: GGACAGGACCCTTTCTGGAATGGGGGTCTTATGACCTACAATCAAACAAGAACATGGACTTCCCGTGCCTCTGGCTAGGGCTGTTGCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546373.5
CDS CAA 72 bp GCCCTAGCCAGAGGCACGGGAAGTCCATGTTCTTGTTaGATTGTAGGTCATAAGACCCCCATTCCAGAAAGG +
Preference number: 6 (lower is better)
Translates to: ALARGTGSPCSC*IVGHKTPIPER
Trigger: CCTTTCTGGAATGGGGGTCTTATGACCTACAATCAAACAAGAACATGGACTTCCCGTGCCTCTGGCTAGGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546373.5
CDS CAA 90 bp GAAATGCTGCTCAGAGAGGCCAAGAAGAATCTAGACAGACAGGCCTaGCTGGGTTTCCTCACTCCATCTTGCAATGCTCTTTTCTTTTCC +
Preference number: 6 (lower is better)
Translates to: EMLLREAKKNLDRQA*LGFLTPSCNALFFS
Trigger: GGAAAAGAAAAGAGCATTGCAAGATGGAGTGAGGAAACCCAGCAAGGCCTGTCTGTCTAGATTCTTCTTGGCCTCTCTGAGCAGCATTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000549691.1
CDS CCA 72 bp CAGGCAAGAGAAGGAGATAATACTCTCCATATTTGTTaGTTCTATAGGGGCAGATATGTTTTCTGTCTTGGA +
Preference number: 6 (lower is better)
Translates to: QAREGDNTLHIC*FYRGRYVFCLG
Trigger: TCCAAGACAGAAAACATATCTGCCCCTATAGAACCAACAAATATGGAGAGTATTATCTCCTTCTCTTGCCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
ENST00000551897.5
CDS TCA 72 bp TACCTTTCACAGATTTCCCAATACTGTGTAAGTGAGTaGCAGAACTGTAGTTTTGGGCAACAGTCTTCAAAA +
Preference number: 6 (lower is better)
Translates to: YLSQISQYCVSE*QNCSFGQQSSK
Trigger: TTTTGAAGACTGTTGCCCAAAACTACAGTTCTGTCACTCACTTACACAGTATTGGGAAATCTGTGAAAGGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000548262.5
ENST00000548954.5
ENST00000551568.6
CDS TCA 72 bp AGTCTTTCACAGATTTCCCAATACTGTGTAAGTGAGTaGCAGAACTGTAGTTTTGGGCAACAGTCTTCAAAA +
Preference number: 6 (lower is better)
Translates to: SLSQISQYCVSE*QNCSFGQQSSK
Trigger: TTTTGAAGACTGTTGCCCAAAACTACAGTTCTGTCACTCACTTACACAGTATTGGGAAATCTGTGAAAGACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547134.5
ENST00000551728.5
CDS CCA 72 bp CTGGGATTTCTCCGGAATAATCACCTTTGTGATGTGTaGATCATGTCCAGGGACTGTAACATTTATTATATA +
Preference number: 6 (lower is better)
Translates to: LGFLRNNHLCDV*IMSRDCNIYYI
Trigger: TATATAATAAATGTTACAGTCCCTGGACATGATCCACACATCACAAAGGTGATTATTCCGGAGAAATCCCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS CCA 72 bp GAAGGATTTGATACTGGGATAGAATCCAATTGCCCTTaGAATGGAAGTAGAATATCCTTTTTAAGAGCACTG +
Preference number: 6 (lower is better)
Translates to: EGFDTGIESNCP*NGSRISFLRAL
Trigger: CAGTGCTCTTAAAAAGGATATTCTACTTCCATTCCAAGGGCAATTGGATTCTATCCCAGTATCAAATCCTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000551568.6
CDS TCA 72 bp TTTCTTTCACAGATTTCCCAATACTGTGTAAGTGAGTaGCAGAACTGTAGTTTTGGGCAACAGTCTTCAAAA +
Preference number: 6 (lower is better)
Translates to: FLSQISQYCVSE*QNCSFGQQSSK
Trigger: TTTTGAAGACTGTTGCCCAAAACTACAGTTCTGTCACTCACTTACACAGTATTGGGAAATCTGTGAAAGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547924.1
ENST00000549781.1
CDS CAA 90 bp GGATACCAAGAGTATCCATTTGTAACACCATTAGGAAAGTTCATTTaGTTTTTACACTCGTCTCCTTTCTTCATGTTGGGATTTCTTGAA +
Preference number: 6 (lower is better)
Translates to: GYQEYPFVTPLGKFI*FLHSSPFFMLGFLE
Trigger: TTCAAGAAATCCCAACATGAAGAAAGGAGACGAGTGTAAAAACAAAATGAACTTTCCTAATGGTGTTACAAATGGATACTCTTGGTATCC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546912.1
ENST00000551568.6
ENST00000551897.5
CDS CAA 72 bp GAGTATCCATTTGTAACACCATTAGGAAAGTTCATTTaGTTTTTACACTCGTCTCCTTTCTTCATGTTGGGA +
Preference number: 6 (lower is better)
Translates to: EYPFVTPLGKFI*FLHSSPFFMLG
Trigger: TCCCAACATGAAGAAAGGAGACGAGTGTAAAAACAAAATGAACTTTCCTAATGGTGTTACAAATGGATACTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000338356.7
ENST00000546373.5
ENST00000546912.1
ENST00000551568.6
ENST00000551897.5