RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COPS9 (Homo sapiens)

Ensembl gene IDs: ENSG00000172428

Ensembl transcript IDs: ENST00000307266.7, ENST00000403160.4, ENST00000489698.1

Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GCGCCACATGGCAGATCTAGACGCCGGAGGACCGCGCCTCTGTGGTaGCCGCCCGCTGGGGTGCTCCCGGCCGCCGGCGCGTCCGCGGCC +
Preference number: 5 (lower is better)
Translates to: APHGRSRRRRTAPLW*PPAGVLPAAGASAA
Trigger: GGCCGCGGACGCGCCGGCGGCCGGGAGCACCCCAGCGGGCGGGCACCACAGAGGCGCGGTCCTCCGGCGTCTAGATCTGCCATGTGGCGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS CCA 90 bp CCCGGCCGCCGGCGCGTCCGCGGCCACCGGCGTTTGTCTTTGCGCTaGCGAGGGCGGGCGTCTGCAACGCCTCTGATGGGCGGCCGGGCG +
Preference number: 5 (lower is better)
Translates to: PGRRRVRGHRRLSLR*RGRASATPLMGGRA
Trigger: CGCCCGGCCGCCCATCAGAGGCGTTGCAGACGCCCGCCCTCGCCAGCGCAAAGACAAACGCCGGTGGCCGCGGACGCGCCGGCGGCCGGG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS CCA 90 bp CGCGCGCCACATGGCAGATCTAGACGCCGGAGGACCGCGCCTCTGTaGTGCCCGCCCGCTGGGGTGCTCCCGGCCGCCGGCGCGTCCGCG +
Preference number: 5 (lower is better)
Translates to: RAPHGRSRRRRTAPL*CPPAGVLPAAGASA
Trigger: CGCGGACGCGCCGGCGGCCGGGAGCACCCCAGCGGGCGGGCACCACAGAGGCGCGGTCCTCCGGCGTCTAGATCTGCCATGTGGCGCGCG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS GCA 90 bp CTAGACGCCGGAGGACCGCGCCTCTGTGGTGCCCGCCCGCTGGGGTaGTCCCGGCCGCCGGCGCGTCCGCGGCCACCGGCGTTTGTCTTT +
Preference number: 5 (lower is better)
Translates to: LDAGGPRLCGARPLG*SRPPARPRPPAFVF
Trigger: AAAGACAAACGCCGGTGGCCGCGGACGCGCCGGCGGCCGGGAGCACCCCAGCGGGCGGGCACCACAGAGGCGCGGTCCTCCGGCGTCTAG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS CCA 90 bp CCGTGGGGGCACCCAGCAGGCACTCAACCCTCAGGCTGCGCCTCCTaGTCCCCCGGGCTAGGGCACACGCTTCCCGCCGCGGTCGGTCGC +
Preference number: 5 (lower is better)
Translates to: PWGHPAGTQPSGCAS*SPGLGHTLPAAVGR
Trigger: GCGACCGACCGCGGCGGGAAGCGTGTGCCCTAGCCCGGGGGACCAGGAGGCGCAGCCTGAGGGTTGAGTGCCTGCTGGGTGCCCCCACGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000489698.1
CDS GCA 90 bp CCGCGGCCACCGGCGTTTGTCTTTGCGCTGGCGAGGGCGGGCGTCTaGAACGCCTCTGATGGGCGGCCGGGCGGCCACGGGGAGAAAAGG +
Preference number: 5 (lower is better)
Translates to: PRPPAFVFALARAGV*NASDGRPGGHGEKR
Trigger: CCTTTTCTCCCCGTGGCCGCCCGGCCGCCCATCAGAGGCGTTGCAGACGCCCGCCCTCGCCAGCGCAAAGACAAACGCCGGTGGCCGCGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS GCA 90 bp CGGTCGGTCGCCGCCTTTCACCAGGTGCTCGGAGAAACCGGGATTTaGTCTCCGCGGGGCAGGGAGCCTGGGAGCCGCGCCCATCGCCCA +
Preference number: 5 (lower is better)
Translates to: RSVAAFHQVLGETGI*SPRGREPGSRAHRP
Trigger: TGGGCGATGGGCGCGGCTCCCAGGCTCCCTGCCCCGCGGAGAGCAAATCCCGGTTTCTCCGAGCACCTGGTGAAAGGCGGCGACCGACCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000489698.1
CDS GCA 90 bp AGGGCACACGCTTCCCGCCGCGGTCGGTCGCCGCCTTTCACCAGGTaGTCGGAGAAACCGGGATTTGCTCTCCGCGGGGCAGGGAGCCTG +
Preference number: 5 (lower is better)
Translates to: RAHASRRGRSPPFTR*SEKPGFALRGAGSL
Trigger: CAGGCTCCCTGCCCCGCGGAGAGCAAATCCCGGTTTCTCCGAGCACCTGGTGAAAGGCGGCGACCGACCGCGGCGGGAAGCGTGTGCCCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000489698.1
CDS TCA 90 bp GGCGTTTGTCTTTGCGCTGGCGAGGGCGGGCGTCTGCAACGCCTCTaGTGGGCGGCCGGGCGGCCACGGGGAGAAAAGGCTGCCAGCAAT +
Preference number: 5 (lower is better)
Translates to: GVCLCAGEGGRLQRL*WAAGRPRGEKAASN
Trigger: ATTGCTGGCAGCCTTTTCTCCCCGTGGCCGCCCGGCCGCCCATCAGAGGCGTTGCAGACGCCCGCCCTCGCCAGCGCAAAGACAAACGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS GCA 90 bp CGCTCTGCTGCCTTCCCACGGACCCCGTGCTCCGACTGCCCTCGCTaGAGTGCGGGAACCATGGAGGACTGCTGGCTTGTCCTGGGCAGT +
Preference number: 5 (lower is better)
Translates to: RSAAFPRTPCSDCPR*SAGTMEDCWLVLGS
Trigger: ACTGCCCAGGACAAGCCAGCAGTCCTCCATGGTTCCCGCACTGCAGCGAGGGCAGTCGGAGCACGGGGTCCGTGGGAAGGCAGCAGAGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS GCA 90 bp ACCACAGGCCGCTCTGCTGCCTTCCCACGGACCCCGTGCTCCGACTaGCCTCGCTGCAGTGCGGGAACCATGGAGGACTGCTGGCTTGTC +
Preference number: 5 (lower is better)
Translates to: TTGRSAAFPRTPCSD*PRCSAGTMEDCWLV
Trigger: GACAAGCCAGCAGTCCTCCATGGTTCCCGCACTGCAGCGAGGGCAGTCGGAGCACGGGGTCCGTGGGAAGGCAGCAGAGCGGCCTGTGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS GCA 90 bp TCTTCCGACACCACAGGCCGCTCTGCTGCCTTCCCACGGACCCCGTaGTCCGACTGCCCTCGCTGCAGTGCGGGAACCATGGAGGACTGC +
Preference number: 5 (lower is better)
Translates to: SSDTTGRSAAFPRTP*SDCPRCSAGTMEDC
Trigger: GCAGTCCTCCATGGTTCCCGCACTGCAGCGAGGGCAGTCGGAGCACGGGGTCCGTGGGAAGGCAGCAGAGCGGCCTGTGGTGTCGGAAGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS GCA 90 bp CCCGTTCAGTTCACATCTCTCTTCCGACACCACAGGCCGCTCTGCTaGCTTCCCACGGACCCCGTGCTCCGACTGCCCTCGCTGCAGTGC +
Preference number: 5 (lower is better)
Translates to: PVQFTSLFRHHRPLC*LPTDPVLRLPSLQC
Trigger: GCACTGCAGCGAGGGCAGTCGGAGCACGGGGTCCGTGGGAAGGCAGCAGAGCGGCCTGTGGTGTCGGAAGAGAGATGTGAACTGAACGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS CCA 90 bp CACGGACCCCGTGCTCCGACTGCCCTCGCTGCAGTGCGGGAACCATaGAGGACTGCTGGCTTGTCCTGGGCAGTCCTGAGCTGTGGATGT +
Preference number: 5 (lower is better)
Translates to: HGPRAPTALAAVREP*RTAGLSWAVLSCGC
Trigger: ACATCCACAGCTCAGGACTGCCCAGGACAAGCCAGCAGTCCTCCATGGTTCCCGCACTGCAGCGAGGGCAGTCGGAGCACGGGGTCCGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS GCA 90 bp TCTCCCGTTCAGTTCACATCTCTCTTCCGACACCACAGGCCGCTCTaGTGCCTTCCCACGGACCCCGTGCTCCGACTGCCCTCGCTGCAG +
Preference number: 5 (lower is better)
Translates to: SPVQFTSLFRHHRPL*CLPTDPVLRLPSLQ
Trigger: CTGCAGCGAGGGCAGTCGGAGCACGGGGTCCGTGGGAAGGCAGCAGAGCGGCCTGTGGTGTCGGAAGAGAGATGTGAACTGAACGGGAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS GCA 90 bp GGGCGGCCACGGGGAGAAAAGGCTGCCAGCAATGGGAGCAGTGCCTaGAGAGCACGCCTCCGACCAGAGGCCGGATCCAGAATAAAGAAG +
Preference number: 5 (lower is better)
Translates to: GRPRGEKAASNGSSA*RARLRPEAGSRIKK
Trigger: CTTCTTTATTCTGGATCCGGCCTCTGGTCGGAGGCGTGCTCTGCAGGCACTGCTCCCATTGCTGGCAGCCTTTTCTCCCCGTGGCCGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS GCA 90 bp CCGTGCTCCGACTGCCCTCGCTGCAGTGCGGGAACCATGGAGGACTaGTGGCTTGTCCTGGGCAGTCCTGAGCTGTGGATGTCATCATCA +
Preference number: 5 (lower is better)
Translates to: PCSDCPRCSAGTMED*WLVLGSPELWMSSS
Trigger: TGATGATGACATCCACAGCTCAGGACTGCCCAGGACAAGCCAGCAGTCCTCCATGGTTCCCGCACTGCAGCGAGGGCAGTCGGAGCACGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS TCA 90 bp CAGACTCTGCCGCAAAGACGGCCGGGTTCACAGGAGCCCAGGGCTTaGCCTTCAGACGTTTGTCTGAAGAAGACACACTCGCGGCCAGTG +
Preference number: 5 (lower is better)
Translates to: QTLPQRRPGSQEPRA*PSDVCLKKTHSRPV
Trigger: CACTGGCCGCGAGTGTGTCTTCTTCAGACAAACGTCTGAAGGTCAAGCCCTGGGCTCCTGTGAACCCGGCCGTCTTTGCGGCAGAGTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS GCA 90 bp CGCCCCCTGCCCATGGCCTGTGCTCCCAAACGCTCTGTCCAAAGCTaGCACTTCTCTCCCGTTCAGTTCACATCTCTCTTCCGACACCAC +
Preference number: 5 (lower is better)
Translates to: RPLPMACAPKRSVQS*HFSPVQFTSLFRHH
Trigger: GTGGTGTCGGAAGAGAGATGTGAACTGAACGGGAGAGAAGTGGCAGCTTTGGACAGAGCGTTTGGGAGCACAGGCCATGGGCAGGGGGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS CCA 90 bp TGCTCCGACTGCCCTCGCTGCAGTGCGGGAACCATGGAGGACTGCTaGCTTGTCCTGGGCAGTCCTGAGCTGTGGATGTCATCATCATCA +
Preference number: 5 (lower is better)
Translates to: CSDCPRCSAGTMEDC*LVLGSPELWMSSSS
Trigger: TGATGATGATGACATCCACAGCTCAGGACTGCCCAGGACAAGCCAGCAGTCCTCCATGGTTCCCGCACTGCAGCGAGGGCAGTCGGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS TCA 90 bp TCAGACGTTTGTCTGAAGAAGACACACTCGCGGCCAGTGAGCAGATaGAGAGGTGAAAGCAAACCAGGGCCCCACGGCCGCTGCACCCCT +
Preference number: 5 (lower is better)
Translates to: SDVCLKKTHSRPVSR*RGESKPGPHGRCTP
Trigger: AGGGGTGCAGCGGCCGTGGGGCCCTGGTTTGCTTTCACCTCTTCATCTGCTCACTGGCCGCGAGTGTGTCTTCTTCAGACAAACGTCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS GCA 90 bp AGCGGATGTTCTCTGCATCTGGTAAACATTAGCGCCTCCGCCCCCTaGCCATGGCCTGTGCTCCCAAACGCTCTGTCCAAAGCTGCCACT +
Preference number: 5 (lower is better)
Translates to: SGCSLHLVNISASAP*PWPVLPNALSKAAT
Trigger: AGTGGCAGCTTTGGACAGAGCGTTTGGGAGCACAGGCCATGGGCAGGGGGCGGAGGCGCTAATGTTTACCAGATGCAGAGAACATCCGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS CCA 90 bp TGTTCTCTGCATCTGGTAAACATTAGCGCCTCCGCCCCCTGCCCATaGCCTGTGCTCCCAAACGCTCTGTCCAAAGCTGCCACTTCTCTC +
Preference number: 5 (lower is better)
Translates to: CSLHLVNISASAPCP*PVLPNALSKAATSL
Trigger: GAGAGAAGTGGCAGCTTTGGACAGAGCGTTTGGGAGCACAGGCCATGGGCAGGGGGCGGAGGCGCTAATGTTTACCAGATGCAGAGAACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS TCA 90 bp GCAACGGATGGTGTTTCATCACTCTTAAAACATTTACCCCTCCAGTaGGTAGAAACTGATATTGTGCTGTCTTCGCTGACCTCTCGCCTG +
Preference number: 5 (lower is better)
Translates to: ATDGVSSLLKHLPLQ*VETDIVLSSLTSRL
Trigger: CAGGCGAGAGGTCAGCGAAGACAGCACAATATCAGTTTCTACTCACTGGAGGGGTAAATGTTTTAAGAGTGATGAAACACCATCCGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS TCA 90 bp TGTTTCATCACTCTTAAAACATTTACCCCTCCAGTGAGTAGAAACTaGTATTGTGCTGTCTTCGCTGACCTCTCGCCTGCTTCTTGTGGT +
Preference number: 5 (lower is better)
Translates to: CFITLKTFTPPVSRN*YCAVFADLSPASCG
Trigger: ACCACAAGAAGCAGGCGAGAGGTCAGCGAAGACAGCACAATATCAGTTTCTACTCACTGGAGGGGTAAATGTTTTAAGAGTGATGAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS GCA 72 bp GGCAGATCTAGACGCCGGAGGACCGCGCCTCTGTGGTaGCCGCCCGCTGGGGTGCTCCCGGCCGCCGGCGCG +
Preference number: 6 (lower is better)
Translates to: GRSRRRRTAPLW*PPAGVLPAAGA
Trigger: CGCGCCGGCGGCCGGGAGCACCCCAGCGGGCGGGCACCACAGAGGCGCGGTCCTCCGGCGTCTAGATCTGCC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS CAA 72 bp GCTCCCGGCCGCCGGCGCGTCCGCGGCCACCGGCGTTaGTCTTTGCGCTGGCGAGGGCGGGCGTCTGCAACG +
Preference number: 6 (lower is better)
Translates to: APGRRRVRGHRR*SLRWRGRASAT
Trigger: CGTTGCAGACGCCCGCCCTCGCCAGCGCAAAGACAAACGCCGGTGGCCGCGGACGCGCCGGCGGCCGGGAGC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS CAA 90 bp GGTGCTCCCGGCCGCCGGCGCGTCCGCGGCCACCGGCGTTTGTCTTaGCGCTGGCGAGGGCGGGCGTCTGCAACGCCTCTGATGGGCGGC +
Preference number: 6 (lower is better)
Translates to: GAPGRRRVRGHRRLS*RWRGRASATPLMGG
Trigger: GCCGCCCATCAGAGGCGTTGCAGACGCCCGCCCTCGCCAGCGCAAAGACAAACGCCGGTGGCCGCGGACGCGCCGGCGGCCGGGAGCACC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS CAA 90 bp CGCTGGGGTGCTCCCGGCCGCCGGCGCGTCCGCGGCCACCGGCGTTaGTCTTTGCGCTGGCGAGGGCGGGCGTCTGCAACGCCTCTGATG +
Preference number: 6 (lower is better)
Translates to: RWGAPGRRRVRGHRR*SLRWRGRASATPLM
Trigger: CATCAGAGGCGTTGCAGACGCCCGCCCTCGCCAGCGCAAAGACAAACGCCGGTGGCCGCGGACGCGCCGGCGGCCGGGAGCACCCCAGCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS CCA 72 bp CATGGCAGATCTAGACGCCGGAGGACCGCGCCTCTGTaGTGCCCGCCCGCTGGGGTGCTCCCGGCCGCCGGC +
Preference number: 6 (lower is better)
Translates to: HGRSRRRRTAPL*CPPAGVLPAAG
Trigger: GCCGGCGGCCGGGAGCACCCCAGCGGGCGGGCACCACAGAGGCGCGGTCCTCCGGCGTCTAGATCTGCCATG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS CAA 72 bp GGCCGCCGGCGCGTCCGCGGCCACCGGCGTTTGTCTTaGCGCTGGCGAGGGCGGGCGTCTGCAACGCCTCTG +
Preference number: 6 (lower is better)
Translates to: GRRRVRGHRRLS*RWRGRASATPL
Trigger: CAGAGGCGTTGCAGACGCCCGCCCTCGCCAGCGCAAAGACAAACGCCGGTGGCCGCGGACGCGCCGGCGGCC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS GCA 72 bp CCGGCGTTTGTCTTTGCGCTGGCGAGGGCGGGCGTCTaGAACGCCTCTGATGGGCGGCCGGGCGGCCACGGG +
Preference number: 6 (lower is better)
Translates to: PAFVFALARAGV*NASDGRPGGHG
Trigger: CCCGTGGCCGCCCGGCCGCCCATCAGAGGCGTTGCAGACGCCCGCCCTCGCCAGCGCAAAGACAAACGCCGG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS CCA 72 bp CGGCGCGTCCGCGGCCACCGGCGTTTGTCTTTGCGCTaGCGAGGGCGGGCGTCTGCAACGCCTCTGATGGGC +
Preference number: 6 (lower is better)
Translates to: RRVRGHRRLSLR*RGRASATPLMG
Trigger: GCCCATCAGAGGCGTTGCAGACGCCCGCCCTCGCCAGCGCAAAGACAAACGCCGGTGGCCGCGGACGCGCCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS CCA 72 bp CACCCAGCAGGCACTCAACCCTCAGGCTGCGCCTCCTaGTCCCCCGGGCTAGGGCACACGCTTCCCGCCGCG +
Preference number: 6 (lower is better)
Translates to: HPAGTQPSGCAS*SPGLGHTLPAA
Trigger: CGCGGCGGGAAGCGTGTGCCCTAGCCCGGGGGACCAGGAGGCGCAGCCTGAGGGTTGAGTGCCTGCTGGGTG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000489698.1
CDS CAA 90 bp GCGGTCGGTCGCCGCCTTTCACCAGGTGCTCGGAGAAACCGGGATTaGCTCTCCGCGGGGCAGGGAGCCTGGGAGCCGCGCCCATCGCCC +
Preference number: 6 (lower is better)
Translates to: AVGRRLSPGARRNRD*LSAGQGAWEPRPSP
Trigger: GGGCGATGGGCGCGGCTCCCAGGCTCCCTGCCCCGCGGAGAGCAAATCCCGGTTTCTCCGAGCACCTGGTGAAAGGCGGCGACCGACCGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000489698.1
CDS TCA 72 bp CTTTGCGCTGGCGAGGGCGGGCGTCTGCAACGCCTCTaGTGGGCGGCCGGGCGGCCACGGGGAGAAAAGGCT +
Preference number: 6 (lower is better)
Translates to: LCAGEGGRLQRL*WAAGRPRGEKA
Trigger: AGCCTTTTCTCCCCGTGGCCGCCCGGCCGCCCATCAGAGGCGTTGCAGACGCCCGCCCTCGCCAGCGCAAAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS GCA 72 bp GCCCGGTGCTGCCTCCCGCCGCGGGCCCCCATGGGGTaGTGCAGCCATCGAAGAGCAGCAAACGCAACTCCT +
Preference number: 6 (lower is better)
Translates to: ARCCLPPRAPMG*CSHRRAANATP
Trigger: AGGAGTTGCGTTTGCTGCTCTTCGATGGCTGCAGCACCCCATGGGGGCCCGCGGCGGGAGGCAGCACCGGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000489698.1
CDS GCA 72 bp CCCACGGACCCCGTGCTCCGACTGCCCTCGCTGCAGTaGGGGAACCATGGAGGACTGCTGGCTTGTCCTGGG +
Preference number: 6 (lower is better)
Translates to: PTDPVLRLPSLQ*GNHGGLLACPG
Trigger: CCCAGGACAAGCCAGCAGTCCTCCATGGTTCCCGCACTGCAGCGAGGGCAGTCGGAGCACGGGGTCCGTGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS GCA 72 bp CGCTCTGCTGCCTTCCCACGGACCCCGTGCTCCGACTaGCCTCGCTGCAGTGCGGGAACCATGGAGGACTGC +
Preference number: 6 (lower is better)
Translates to: RSAAFPRTPCSD*PRCSAGTMEDC
Trigger: GCAGTCCTCCATGGTTCCCGCACTGCAGCGAGGGCAGTCGGAGCACGGGGTCCGTGGGAAGGCAGCAGAGCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS GCA 72 bp GCTTCCCGCCGCGGTCGGTCGCCGCCTTTCACCAGGTaGTCGGAGAAACCGGGATTTGCTCTCCGCGGGGCA +
Preference number: 6 (lower is better)
Translates to: ASRRGRSPPFTR*SEKPGFALRGA
Trigger: TGCCCCGCGGAGAGCAAATCCCGGTTTCTCCGAGCACCTGGTGAAAGGCGGCGACCGACCGCGGCGGGAAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000489698.1
CDS GCA 72 bp CGGTGCTGCCTCCCGCCGCGGGCCCCCATGGGGTGCTaGAGCCATCGAAGAGCAGCAAACGCAACTCCTCTG +
Preference number: 6 (lower is better)
Translates to: RCCLPPRAPMGC*SHRRAANATPL
Trigger: CAGAGGAGTTGCGTTTGCTGCTCTTCGATGGCTGCAGCACCCCATGGGGGCCCGCGGCGGGAGGCAGCACCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000489698.1
CDS GCA 72 bp GCCTTCCCACGGACCCCGTGCTCCGACTGCCCTCGCTaGAGTGCGGGAACCATGGAGGACTGCTGGCTTGTC +
Preference number: 6 (lower is better)
Translates to: AFPRTPCSDCPR*SAGTMEDCWLV
Trigger: GACAAGCCAGCAGTCCTCCATGGTTCCCGCACTGCAGCGAGGGCAGTCGGAGCACGGGGTCCGTGGGAAGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS CCA 72 bp CGTGCTCCGACTGCCCTCGCTGCAGTGCGGGAACCATaGAGGACTGCTGGCTTGTCCTGGGCAGTCCTGAGC +
Preference number: 6 (lower is better)
Translates to: RAPTALAAVREP*RTAGLSWAVLS
Trigger: GCTCAGGACTGCCCAGGACAAGCCAGCAGTCCTCCATGGTTCCCGCACTGCAGCGAGGGCAGTCGGAGCACG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS GCA 72 bp TTCACATCTCTCTTCCGACACCACAGGCCGCTCTGCTaGCTTCCCACGGACCCCGTGCTCCGACTGCCCTCG +
Preference number: 6 (lower is better)
Translates to: FTSLFRHHRPLC*LPTDPVLRLPS
Trigger: CGAGGGCAGTCGGAGCACGGGGTCCGTGGGAAGGCAGCAGAGCGGCCTGTGGTGTCGGAAGAGAGATGTGAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS GCA 72 bp CGGGGAGAAAAGGCTGCCAGCAATGGGAGCAGTGCCTaGAGAGCACGCCTCCGACCAGAGGCCGGATCCAGA +
Preference number: 6 (lower is better)
Translates to: RGEKAASNGSSA*RARLRPEAGSR
Trigger: TCTGGATCCGGCCTCTGGTCGGAGGCGTGCTCTGCAGGCACTGCTCCCATTGCTGGCAGCCTTTTCTCCCCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS GCA 72 bp GACTGCCCTCGCTGCAGTGCGGGAACCATGGAGGACTaGTGGCTTGTCCTGGGCAGTCCTGAGCTGTGGATG +
Preference number: 6 (lower is better)
Translates to: DCPRCSAGTMED*WLVLGSPELWM
Trigger: CATCCACAGCTCAGGACTGCCCAGGACAAGCCAGCAGTCCTCCATGGTTCCCGCACTGCAGCGAGGGCAGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS CCA 72 bp TGCCCTCGCTGCAGTGCGGGAACCATGGAGGACTGCTaGCTTGTCCTGGGCAGTCCTGAGCTGTGGATGTCA +
Preference number: 6 (lower is better)
Translates to: CPRCSAGTMEDC*LVLGSPELWMS
Trigger: TGACATCCACAGCTCAGGACTGCCCAGGACAAGCCAGCAGTCCTCCATGGTTCCCGCACTGCAGCGAGGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS CCA 72 bp CATCTGGTAAACATTAGCGCCTCCGCCCCCTGCCCATaGCCTGTGCTCCCAAACGCTCTGTCCAAAGCTGCC +
Preference number: 6 (lower is better)
Translates to: HLVNISASAPCP*PVLPNALSKAA
Trigger: GGCAGCTTTGGACAGAGCGTTTGGGAGCACAGGCCATGGGCAGGGGGCGGAGGCGCTAATGTTTACCAGATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS TCA 72 bp TGTCTGAAGAAGACACACTCGCGGCCAGTGAGCAGATaGAGAGGTGAAAGCAAACCAGGGCCCCACGGCCGC +
Preference number: 6 (lower is better)
Translates to: CLKKTHSRPVSR*RGESKPGPHGR
Trigger: GCGGCCGTGGGGCCCTGGTTTGCTTTCACCTCTTCATCTGCTCACTGGCCGCGAGTGTGTCTTCTTCAGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS CAA 90 bp TCAGACTCTGCCGCAAAGACGGCCGGGTTCACAGGAGCCCAGGGCTaGACCTTCAGACGTTTGTCTGAAGAAGACACACTCGCGGCCAGT +
Preference number: 6 (lower is better)
Translates to: SDSAAKTAGFTGAQG*TFRRLSEEDTLAAS
Trigger: ACTGGCCGCGAGTGTGTCTTCTTCAGACAAACGTCTGAAGGTCAAGCCCTGGGCTCCTGTGAACCCGGCCGTCTTTGCGGCAGAGTCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS CAA 90 bp CCGACTGCCCTCGCTGCAGTGCGGGAACCATGGAGGACTGCTGGCTaGTCCTGGGCAGTCCTGAGCTGTGGATGTCATCATCATCAAAAA +
Preference number: 6 (lower is better)
Translates to: PTALAAVREPWRTAG*SWAVLSCGCHHHQK
Trigger: TTTTTGATGATGATGACATCCACAGCTCAGGACTGCCCAGGACAAGCCAGCAGTCCTCCATGGTTCCCGCACTGCAGCGAGGGCAGTCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS CAA 90 bp AAGACGGCCGGGTTCACAGGAGCCCAGGGCTTGACCTTCAGACGTTaGTCTGAAGAAGACACACTCGCGGCCAGTGAGCAGATGAAGAGG +
Preference number: 6 (lower is better)
Translates to: KTAGFTGAQGLTFRR*SEEDTLAASEQMKR
Trigger: CCTCTTCATCTGCTCACTGGCCGCGAGTGTGTCTTCTTCAGACAAACGTCTGAAGGTCAAGCCCTGGGCTCCTGTGAACCCGGCCGTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS GCA 72 bp TCTCTGCATCTGGTAAACATTAGCGCCTCCGCCCCCTaGCCATGGCCTGTGCTCCCAAACGCTCTGTCCAAA +
Preference number: 6 (lower is better)
Translates to: SLHLVNISASAP*PWPVLPNALSK
Trigger: TTTGGACAGAGCGTTTGGGAGCACAGGCCATGGGCAGGGGGCGGAGGCGCTAATGTTTACCAGATGCAGAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS CAA 72 bp GGGTTCACAGGAGCCCAGGGCTTGACCTTCAGACGTTaGTCTGAAGAAGACACACTCGCGGCCAGTGAGCAG +
Preference number: 6 (lower is better)
Translates to: GFTGAQGLTFRR*SEEDTLAASEQ
Trigger: CTGCTCACTGGCCGCGAGTGTGTCTTCTTCAGACAAACGTCTGAAGGTCAAGCCCTGGGCTCCTGTGAACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000403160.4
CDS CAA 72 bp AAGCGTCCTGTGCCCATTTTCCCCTCACTTGTTGCTTaGTTGGTGCCACACAGCGGATGTTCTCTGCATCTG +
Preference number: 6 (lower is better)
Translates to: KRPVPIFPSLVA*LVPHSGCSLHL
Trigger: CAGATGCAGAGAACATCCGCTGTGTGGCACCAACAAAGCAACAAGTGAGGGGAAAATGGGCACAGGACGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS CAA 72 bp TTCTTAAGCGTCCTGTGCCCATTTTCCCCTCACTTGTaGCTTTGTTGGTGCCACACAGCGGATGTTCTCTGC +
Preference number: 6 (lower is better)
Translates to: FLSVLCPFSPHL*LCWCHTADVLC
Trigger: GCAGAGAACATCCGCTGTGTGGCACCAACAAAGCAACAAGTGAGGGGAAAATGGGCACAGGACGCTTAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS CAA 90 bp TCCGTAAACTGTTTCTTAAGCGTCCTGTGCCCATTTTCCCCTCACTaGTTGCTTTGTTGGTGCCACACAGCGGATGTTCTCTGCATCTGG +
Preference number: 6 (lower is better)
Translates to: SVNCFLSVLCPFSPH*LLCWCHTADVLCIW
Trigger: CCAGATGCAGAGAACATCCGCTGTGTGGCACCAACAAAGCAACAAGTGAGGGGAAAATGGGCACAGGACGCTTAAGAAACAGTTTACGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS CAA 90 bp CTGTTTCTTAAGCGTCCTGTGCCCATTTTCCCCTCACTTGTTGCTTaGTTGGTGCCACACAGCGGATGTTCTCTGCATCTGGTAAACATT +
Preference number: 6 (lower is better)
Translates to: LFLKRPVPIFPSLVA*LVPHSGCSLHLVNI
Trigger: AATGTTTACCAGATGCAGAGAACATCCGCTGTGTGGCACCAACAAAGCAACAAGTGAGGGGAAAATGGGCACAGGACGCTTAAGAAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS TCA 72 bp ACTCTTAAAACATTTACCCCTCCAGTGAGTAGAAACTaGTATTGTGCTGTCTTCGCTGACCTCTCGCCTGCT +
Preference number: 6 (lower is better)
Translates to: TLKTFTPPVSRN*YCAVFADLSPA
Trigger: AGCAGGCGAGAGGTCAGCGAAGACAGCACAATATCAGTTTCTACTCACTGGAGGGGTAAATGTTTTAAGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307266.7
CDS GCA 72 bp ATTGGTTCTTCCGTAAACTGTTTCTTAAGCGTCCTGTaGCCATTTTCCCCTCACTTGTTGCTTTGTTGGTGC +
Preference number: 6 (lower is better)
Translates to: IGSSVNCFLSVL*PFSPHLLLCWC
Trigger: GCACCAACAAAGCAACAAGTGAGGGGAAAATGGGCACAGGACGCTTAAGAAACAGTTTACGGAAGAACCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307266.7