Pregenerated sensors for CCDC172 (Homo sapiens)
Ensembl gene IDs: ENSG00000182645Ensembl transcript IDs: ENST00000333254.4
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGATCCGTTGTAACGGGTACCATTCATATATCTATCACAAAGATTTaGTTCTCAGATATTCTGATCAAATCTCAGATGGCTGATCAATTC | + |
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Preference number: 1 (lower is better) Translates to: GSVVTGTIHISITKI*FSDILIKSQMADQF Trigger: GAATTGATCAGCCATCTGAGATTTGATCAGAATATCTGAGAATCAAATCTTTGTGATAGATATATGAATGGTACCCGTTACAACGGATCC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| 3UTR-3UTR TCA 90 bp | TTGTCCCACGGTTCTGCAGGCTGTACAGGAAGCATAGTGACTTCTGCTTCTAGGAAGAATAGGACAGCTTaGGGTTCAGGGGCATATAAG | + |
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Preference number: 2 (lower is better) Translates to: LSHGSAGCTGSIVTSASRKNRTA*GSGAYK Trigger: CTTATATGCCCCTGAACCTCAAGCTGTCCTATTCTT...CCTAGAAGCAGAAGTCACTATGCTTCCTGTACAGCCTGCAGAACCGTGGGACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| 3UTR-3UTR TCA 90 bp | TCATACGGTGGCAGCAGGAGCAAAGTGGAGAAGTGCTATACACTAGTAAACAACGTGCTAAGCTATTCATaGGAAACCCACCCCCATGAC | + |
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Preference number: 2 (lower is better) Translates to: SYGGSRSKVEKCYTLVNNVLSYS*ETHPHD Trigger: GTCATGGGGGTGGGTTTCTCATGAATAGCTTAGCAC...GTTGTTTACTAGTGTATAGCACTTCTCCACTTTGCTCCTGCTGCCACCGTATGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| 3UTR-3UTR CCA 90 bp | ACAACTAGCTCTCAGGAGAACTCAAGGACAGTACCAAGAAGAATGGTGCTAAGCACCCACCTCCAACAGTaGGGATCACAATTCAACATG | + |
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Preference number: 2 (lower is better) Translates to: TTSSQENSRTVPRRMVLSTHLQQ*GSQFNM Trigger: CATGTTGAATTGTGATCCCCACTGTTGGAGGTGGGT...GCTTAGCACCATTCTTCTTGGTACTGTCCTTGAGTTCTCCTGAGAGCTAGTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| 3UTR-3UTR CCA 90 bp | TTTACAAAGAACACAAGTTTAATTGTCCCACGGTTCTGCAGGCTGTACAGGAAGAGACATCTCATACGGTaGCAGCAGGAGCAAAGTGGA | + |
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Preference number: 2 (lower is better) Translates to: FTKNTSLIVPRFCRLYRKRHLIR*QQEQSG Trigger: TCCACTTTGCTCCTGCTGCCACCGTATGAGATGTCT...CTTCCTGTACAGCCTGCAGAACCGTGGGACAATTAAACTTGTGTTCTTTGTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| 3UTR CCA 72 bp | ACTGAAGGCAAAGGGGGAGTGAGACATCTCATACGGTaGCAGCAGGAGCAAAGTGGAGAAGTGCTATACACT | + |
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Preference number: 3 (lower is better) Translates to: TEGKGGVRHLIR*QQEQSGEVLYT Trigger: AGTGTATAGCACTTCTCCACTTTGCTCCTGCTGCCACCGTATGAGATGTCTCACTCCCCCTTTGCCTTCAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| 3UTR TCA 72 bp | GGACCCACCTCCAACAGTGGGGATCACAATTCAACATaGGATTTGGGCATGGACACAGATCCAAACCATATT | + |
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Preference number: 3 (lower is better) Translates to: GPTSNSGDHNST*DLGMDTDPNHI Trigger: AATATGGTTTGGATCTGTGTCCATGCCCAAATCTCATGTTGAATTGTGATCCCCACTGTTGGAGGTGGGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| 3UTR TCA 72 bp | AGGACAGTACCAAGAAGAATGGTGCTAAGCTATTCATaGGAAACCCACCCCCATGACCCAATCACCTCCTAT | + |
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Preference number: 3 (lower is better) Translates to: RTVPRRMVLSYS*ETHPHDPITSY Trigger: ATAGGAGGTGATTGGGTCATGGGGGTGGGTTTCTCATGAATAGCTTAGCACCATTCTTCTTGGTACTGTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| 3UTR GCA 72 bp | TTTACAAAGAACACAAGTTTAATTGTCCCACGGTTCTaGAGGCTGTACAGGAAGCATAGTGACTTCTGCTTC | + |
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Preference number: 3 (lower is better) Translates to: FTKNTSLIVPRF*RLYRKHSDFCF Trigger: GAAGCAGAAGTCACTATGCTTCCTGTACAGCCTGCAGAACCGTGGGACAATTAAACTTGTGTTCTTTGTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR TCA 90 bp | CACCCCCATGACCCAATCACCTCCTATCAGGACCCACCTCCAACAGTGGGGATCGTGCTAAGCTATTCATaGGAAACCCACCCCCATGAC | + |
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Preference number: 4 (lower is better) Translates to: HPHDPITSYQDPPPTVGIVLSYS*ETHPHD Trigger: GTCATGGGGGTGGGTTTCTCATGAATAGCTTAGCAC...GATCCCCACTGTTGGAGGTGGGTCCTGATAGGAGGTGATTGGGTCATGGGGGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR TCA 90 bp | TGGCAGCAGGAGCAAAGTGGAGAAGTGCTATACACTAGTAAACAACTAGCTCTCCGACTCTCCTCCGCCTaGTGCTCGGTGAAGATGATG | + |
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Preference number: 4 (lower is better) Translates to: WQQEQSGEVLYTSKQLALRLSSA*CSVKMM Trigger: CATCATCTTCACCGAGCATCAGGCGGAGGAGAGTCG...GAGAGCTAGTTGTTTACTAGTGTATAGCACTTCTCCACTTTGCTCCTGCTGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR GCA 90 bp | CACCCCCATGACCCAATCACCTCCTATCAGGACCCACCTCCAACAGTGGGGATCCTGAAGATCTTTCTGTaGCAATGTCAACTCCAAAAA | + |
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Preference number: 4 (lower is better) Translates to: HPHDPITSYQDPPPTVGILKIFL*QCQLQK Trigger: TTTTTGGAGTTGACATTGGCACAGAAAGATCTTCAG...GATCCCCACTGTTGGAGGTGGGTCCTGATAGGAGGTGATTGGGTCATGGGGGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR GCA 90 bp | AGACATCTCATACGGTGGCAGCAGGAGCAAAGTGGAGAAGTGCTATACACTAGTATTGTCCCACGGTTCTaGAGGCTGTACAGGAAGCAT | + |
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Preference number: 4 (lower is better) Translates to: RHLIRWQQEQSGEVLYTSIVPRF*RLYRKH Trigger: ATGCTTCCTGTACAGCCTGCAGAACCGTGGGACAAT...ACTAGTGTATAGCACTTCTCCACTTTGCTCCTGCTGCCACCGTATGAGATGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR CCA 90 bp | TTTACAAAGAACACAAGTTTAATTGTCCCACGGTTCTGCAGGCTGTACAGGAAGGCTCATCTCAGGGCCTaGCTCCTGCGATCCTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: FTKNTSLIVPRFCRLYRKAHLRA*LLRSFS Trigger: AGAAAAGGATCGCAGGAGCCAGGCCCTGAGATGAGC...CTTCCTGTACAGCCTGCAGAACCGTGGGACAATTAAACTTGTGTTCTTTGTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR CCA 90 bp | GAACTCAAGGACAGTACCAAGAAGAATGGTGCTAAGCTATTCATGAGAAACCCAGCTTTTGAGGGCGTCTaGGCAGCAGCCATTTCTGTA | + |
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Preference number: 4 (lower is better) Translates to: ELKDSTKKNGAKLFMRNPAFEGV*AAAISV Trigger: TACAGAAATGGCTGCTGCCCAGACGCCCTCAAAAGC...TGGGTTTCTCATGAATAGCTTAGCACCATTCTTCTTGGTACTGTCCTTGAGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR CCA 90 bp | ACCCCATATTTCCCACAAGGATCCGTTGTAACGGGTACCATTCATATATCTATCAACTCTGAGGATCCTTaGCTTTTGAGGGCGTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: TPYFPQGSVVTGTIHISINSEDP*LLRASG Trigger: CCCAGACGCCCTCAAAAGCCAAGGATCCTCAGAGTT...GATAGATATATGAATGGTACCCGTTACAACGGATCCTTGTGGGAAATATGGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR TCA 90 bp | TCATACGGTGGCAGCAGGAGCAAAGTGGAGAAGTGCTATACACTAGTAAACAACAAGAATAGGACAGCTTaGGGTTCAGGGGCATATAAG | + |
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Preference number: 4 (lower is better) Translates to: SYGGSRSKVEKCYTLVNNKNRTA*GSGAYK Trigger: CTTATATGCCCCTGAACCTCAAGCTGTCCTATTCTT...GTTGTTTACTAGTGTATAGCACTTCTCCACTTTGCTCCTGCTGCCACCGTATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR TCA 90 bp | TTTACAAAGAACACAAGTTTAATTGTCCCACGGTTCTGCAGGCTGTACAGGAAGGTTTCCAATCATGACTaGAGGCAAAGGGGGAGTGAG | + |
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Preference number: 4 (lower is better) Translates to: FTKNTSLIVPRFCRLYRKVSNHD*RQRGSE Trigger: CTCACTCCCCCTTTGCCTTCAGTCATGATTGGAAAC...CTTCCTGTACAGCCTGCAGAACCGTGGGACAATTAAACTTGTGTTCTTTGTAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR TCA 90 bp | GAAGTGCTATACACTAGTAAACAACTAGCTCTCAGGAGAACTCAAGGACAGTACGGAAGTTTCCAATCATaGCTGAAGGCAAAGGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: EVLYTSKQLALRRTQGQYGSFQS*LKAKGE Trigger: CTCCCCCTTTGCCTTCAGTCATGATTGGAAACTTCC...GTACTGTCCTTGAGTTCTCCTGAGAGCTAGTTGTTTACTAGTGTATAGCACTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR GCA 90 bp | TTTACAAAGAACACAAGTTTAATTGTCCCACGGTTCTGCAGGCTGTACAGGAAGCAGCAAAATGGTACGTaGCAACAAAACCCACGGCCA | + |
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Preference number: 4 (lower is better) Translates to: FTKNTSLIVPRFCRLYRKQQNGT*QQNPRP Trigger: TGGCCGTGGGTTTTGTTGGCACGTACCATTTTGCTG...CTTCCTGTACAGCCTGCAGAACCGTGGGACAATTAAACTTGTGTTCTTTGTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR CCA 90 bp | ACCCCATATTTCCCACAAGGATCCGTTGTAACGGGTACCATTCATATATCTATCAGACATCTCATACGGTaGCAGCAGGAGCAAAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: TPYFPQGSVVTGTIHISIRHLIR*QQEQSG Trigger: TCCACTTTGCTCCTGCTGCCACCGTATGAGATGTCT...GATAGATATATGAATGGTACCCGTTACAACGGATCCTTGTGGGAAATATGGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR TCA 90 bp | AGACATCTCATACGGTGGCAGCAGGAGCAAAGTGGAGAAGTGCTATACACTAGTATAGCCTCAAAGGTTTaGAGAAGCATATTCCTATGG | + |
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Preference number: 4 (lower is better) Translates to: RHLIRWQQEQSGEVLYTSIASKV*RSIFLW Trigger: CCATAGGAATATGCTTCTTCAAACCTTTGAGGCTAT...ACTAGTGTATAGCACTTCTCCACTTTGCTCCTGCTGCCACCGTATGAGATGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR CCA 90 bp | TGGCAGCAGGAGCAAAGTGGAGAAGTGCTATACACTAGTAAACAACTAGCTCTCTGTCTTTCAGCAAAATaGTACGTGCCAACAAAACCC | + |
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Preference number: 4 (lower is better) Translates to: WQQEQSGEVLYTSKQLALCLSAK*YVPTKP Trigger: GGGTTTTGTTGGCACGTACCATTTTGCTGAAAGACA...GAGAGCTAGTTGTTTACTAGTGTATAGCACTTCTCCACTTTGCTCCTGCTGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR CCA 90 bp | GAAGTGCTATACACTAGTAAACAACTAGCTCTCAGGAGAACTCAAGGACAGTACACCCACCTCCAACAGTaGGGATCACAATTCAACATG | + |
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Preference number: 4 (lower is better) Translates to: EVLYTSKQLALRRTQGQYTHLQQ*GSQFNM Trigger: CATGTTGAATTGTGATCCCCACTGTTGGAGGTGGGT...GTACTGTCCTTGAGTTCTCCTGAGAGCTAGTTGTTTACTAGTGTATAGCACTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR TCA 90 bp | ACAACTAGCTCTCAGGAGAACTCAAGGACAGTACCAAGAAGAATGGTGCTAAGCCAAATCTCAGATGGCTaGTCAATTCTCTGTAAGTTA | + |
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Preference number: 4 (lower is better) Translates to: TTSSQENSRTVPRRMVLSQISDG*SILCKL Trigger: TAACTTACAGAGAATTGATCAGCCATCTGAGATTTG...GCTTAGCACCATTCTTCTTGGTACTGTCCTTGAGTTCTCCTGAGAGCTAGTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR TCA 90 bp | GAACTCAAGGACAGTACCAAGAAGAATGGTGCTAAGCTATTCATGAGAAACCCATTTTATAACCAACTCTaGGGATCCTTGGCTTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: ELKDSTKKNGAKLFMRNPFYNQL*GSLAFE Trigger: CTCAAAAGCCAAGGATCCTCAGAGTTGGTTATAAAA...TGGGTTTCTCATGAATAGCTTAGCACCATTCTTCTTGGTACTGTCCTTGAGTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR GCA 90 bp | GAACTCAAGGACAGTACCAAGAAGAATGGTGCTAAGCTATTCATGAGAAACCCAATAACGTCCTCAAGGTaGTCTGTCTTTCAGCAAAAT | + |
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Preference number: 4 (lower is better) Translates to: ELKDSTKKNGAKLFMRNPITSSR*SVFQQN Trigger: ATTTTGCTGAAAGACAGAGCACCTTGAGGACGTTAT...TGGGTTTCTCATGAATAGCTTAGCACCATTCTTCTTGGTACTGTCCTTGAGTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR GCA 90 bp | GAACTCAAGGACAGTACCAAGAAGAATGGTGCTAAGCTATTCATGAGAAACCCAAGCAAAGTGGAGAAGTaGTATACACTAGTAAACAAC | + |
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Preference number: 4 (lower is better) Translates to: ELKDSTKKNGAKLFMRNPSKVEK*YTLVNN Trigger: GTTGTTTACTAGTGTATAGCACTTCTCCACTTTGCT...TGGGTTTCTCATGAATAGCTTAGCACCATTCTTCTTGGTACTGTCCTTGAGTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR CAA 90 bp | GGGAGTGAGACATCTCATACGGTGGCAGCAGGAGCAAAGTGGAGAAGTGCTATAGAGGATCCTTGGCTTTaGAGGGCGTCTGGGCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: GSETSHTVAAGAKWRSAIEDPWL*RASGQQ Trigger: CTGCTGCCCAGACGCCCTCAAAAGCCAAGGATCCTC...TATAGCACTTCTCCACTTTGCTCCTGCTGCCACCGTATGAGATGTCTCACTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR CAA 90 bp | ACAACTAGCTCTCAGGAGAACTCAAGGACAGTACCAAGAAGAATGGTGCTAAGCTCTGCCTCTAGATATTaGGTAGTACAAATGGATTCA | + |
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Preference number: 5 (lower is better) Translates to: TTSSQENSRTVPRRMVLSSASRY*VVQMDS Trigger: TGAATCCATTTGTACTACCAAATATCTAGAGGCAGA...GCTTAGCACCATTCTTCTTGGTACTGTCCTTGAGTTCTCCTGAGAGCTAGTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS-3UTR CAA 90 bp | ACCCCATATTTCCCACAAGGATCCGTTGTAACGGGTACCATTCATATATCTATCTATAGCCTCAAAGGTTaGAAGAAGCATATTCCTATG | + |
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Preference number: 5 (lower is better) Translates to: TPYFPQGSVVTGTIHISIYSLKG*KKHIPM Trigger: CATAGGAATATGCTTCTTCAAACCTTTGAGGCTATA...GATAGATATATGAATGGTACCCGTTACAACGGATCCTTGTGGGAAATATGGGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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| CDS GCA 72 bp | CAGTCCTCTCTCATTTTAGGGATAACGTCCTCAAGGTaGTCTGTCTTTCAGCAAAATGGTACGTGCCAACAA | + |
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Preference number: 6 (lower is better) Translates to: QSSLILGITSSR*SVFQQNGTCQQ Trigger: TTGTTGGCACGTACCATTTTGCTGAAAGACAGAGCACCTTGAGGACGTTATCCCTAAAATGAGAGAGGACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000333254.4 |
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