Pregenerated sensors for CASC23 (Homo sapiens)

Ensembl gene IDs: ENSG00000255420

Ensembl transcript IDs: ENST00000534076.2

Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GAGCTTTTCCAATTGGCAACACCACCATGGGTTGTCACACACTGTTaGTGGGAGAATGAAGTGAGTCCTCATGCAACTCCACCGGGAGGG	+
Preference number: 5 (lower is better) Translates to: ELFQLATPPWVVTHC*WENEVSPHATPPGG Trigger: CCCTCCCGGTGGAGTTGCATGAGGACTCACTTCATTCTCCCAGCAACAGTGTGTGACAACCCATGGTGGTGTTGCCAATTGGAAAAGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS CCA 90 bp	TCCTATCGCTCCTCTGTGCAGAGCAGCTCATCTCTGCAGATGAACTaGGACCCTTCCTGCCATAACCAAAGGGCCATGAATCAGCTTTCA	+
Preference number: 5 (lower is better) Translates to: SYRSSVQSSSSLQMN*DPSCHNQRAMNQLS Trigger: TGAAAGCTGATTCATGGCCCTTTGGTTATGGCAGGAAGGGTCCCAGTTCATCTGCAGAGATGAGCTGCTCTGCACAGAGGAGCGATAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS TCA 90 bp	TGGGGCAGCGAGGCCAGTTACACAGGCTTTGTATGTCTCCATGACTaGCTCCTCATTAAGAGCTTTGGACAACAAGGCTTGGGTGAGCTT	+
Preference number: 5 (lower is better) Translates to: WGSEASYTGFVCLHD*LLIKSFGQQGLGEL Trigger: AAGCTCACCCAAGCCTTGTTGTCCAAAGCTCTTAATGAGGAGTCAGTCATGGAGACATACAAAGCCTGTGTAACTGGCCTCGCTGCCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS TCA 90 bp	TACCTATGGCTCTTTTTAAAGGTGAGCAAAGTGGTTCCAGCTGTGTaGAGGCAGTCCTTGGAGAAGAGGTGCAGGTGCTTGAGTTTTGGG	+
Preference number: 5 (lower is better) Translates to: YLWLFLKVSKVVPAV*RQSLEKRCRCLSFG Trigger: CCCAAAACTCAAGCACCTGCACCTCTTCTCCAAGGACTGCCTTCACACAGCTGGAACCACTTTGCTCACCTTTAAAAAGAGCCATAGGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS GCA 90 bp	TCTGTGCAGAGCAGCTCATCTCTGCAGATGAACTGGGACCCTTCCTaGCATAACCAAAGGGCCATGAATCAGCTTTCAAGGAAAAAGAAC	+
Preference number: 5 (lower is better) Translates to: SVQSSSSLQMNWDPS*HNQRAMNQLSRKKN Trigger: GTTCTTTTTCCTTGAAAGCTGATTCATGGCCCTTTGGTTATGGCAGGAAGGGTCCCAGTTCATCTGCAGAGATGAGCTGCTCTGCACAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS TCA 90 bp	AGTACTTCCACCATGACCAGTTTAAAGCTACCAACAGGATATCTCTaGATATGGAGTTGGGAAGAGTTGCTAACAATCAGCTTTTGGAAC	+
Preference number: 5 (lower is better) Translates to: STSTMTSLKLPTGYL*IWSWEELLTISFWN Trigger: GTTCCAAAAGCTGATTGTTAGCAACTCTTCCCAACTCCATATTCAGAGATATCCTGTTGGTAGCTTTAAACTGGTCATGGTGGAAGTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS CCA 72 bp	GTGAGTCCTCATGCAACTCCACCGGGAGGGTTCACTTaGAAGCCTGTGGTTTCTCCTGGCTTTGCTCCAAAG	+
Preference number: 6 (lower is better) Translates to: VSPHATPPGGFT*KPVVSPGFAPK Trigger: CTTTGGAGCAAAGCCAGGAGAAACCACAGGCTTCCAAGTGAACCCTCCCGGTGGAGTTGCATGAGGACTCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS TCA 72 bp	ACCACCATGGGTTGTCACACACTGTTGCTGGGAGAATaGAGTGAGTCCTCATGCAACTCCACCGGGAGGGTT	+
Preference number: 6 (lower is better) Translates to: TTMGCHTLLLGE*SESSCNSTGRV Trigger: AACCCTCCCGGTGGAGTTGCATGAGGACTCACTTCATTCTCCCAGCAACAGTGTGTGACAACCCATGGTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS TCA 72 bp	CATGGGTTGTCACACACTGTTGCTGGGAGAATGAAGTaGGTCCTCATGCAACTCCACCGGGAGGGTTCACTT	+
Preference number: 6 (lower is better) Translates to: HGLSHTVAGRMK*VLMQLHREGSL Trigger: AAGTGAACCCTCCCGGTGGAGTTGCATGAGGACTCACTTCATTCTCCCAGCAACAGTGTGTGACAACCCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS CCA 72 bp	TTGGCAACACCACCATGGGTTGTCACACACTGTTGCTaGGAGAATGAAGTGAGTCCTCATGCAACTCCACCG	+
Preference number: 6 (lower is better) Translates to: LATPPWVVTHCC*ENEVSPHATPP Trigger: CGGTGGAGTTGCATGAGGACTCACTTCATTCTCCCAGCAACAGTGTGTGACAACCCATGGTGGTGTTGCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS CCA 72 bp	GGCTTGGGTGAGCTTTTCCAATTGGCAACACCACCATaGGTTGTCACACACTGTTGCTGGGAGAATGAAGTG	+
Preference number: 6 (lower is better) Translates to: GLGELFQLATPP*VVTHCCWENEV Trigger: CACTTCATTCTCCCAGCAACAGTGTGTGACAACCCATGGTGGTGTTGCCAATTGGAAAAGCTCACCCAAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS CCA 72 bp	GGCCATCCCAGCATGGAGGCAGATCCTAGGTACCTATaGCTCTTTTTAAAGGTGAGCAAAGTGGTTCCAGCT	+
Preference number: 6 (lower is better) Translates to: GHPSMEADPRYL*LFLKVSKVVPA Trigger: AGCTGGAACCACTTTGCTCACCTTTAAAAAGAGCCATAGGTACCTAGGATCTGCCTCCATGCTGGGATGGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS CAA 72 bp	AGCTACACCTCAACGTTGTCTACACACAAGGCAAGGTaGCTTCGCTCTTTCACTCCTGCACCTGTCAGGCTT	+
Preference number: 6 (lower is better) Translates to: SYTSTLSTHKAR*LRSFTPAPVRL Trigger: AAGCCTGACAGGTGCAGGAGTGAAAGAGCGAAGCAACCTTGCCTTGTGTGTAGACAACGTTGAGGTGTAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS TCA 72 bp	CTCTTTTTAAAGGTGAGCAAAGTGGTTCCAGCTGTGTaGAGGCAGTCCTTGGAGAAGAGGTGCAGGTGCTTG	+
Preference number: 6 (lower is better) Translates to: LFLKVSKVVPAV*RQSLEKRCRCL Trigger: CAAGCACCTGCACCTCTTCTCCAAGGACTGCCTTCACACAGCTGGAACCACTTTGCTCACCTTTAAAAAGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS CCA 72 bp	GCTTTGGACAACAAGGCTTGGGTGAGCTTTTCCAATTaGCAACACCACCATGGGTTGTCACACACTGTTGCT	+
Preference number: 6 (lower is better) Translates to: ALDNKAWVSFSN*QHHHGLSHTVA Trigger: AGCAACAGTGTGTGACAACCCATGGTGGTGTTGCCAATTGGAAAAGCTCACCCAAGCCTTGTTGTCCAAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS CAA 72 bp	AGCTTTGGACAACAAGGCTTGGGTGAGCTTTTCCAATaGGCAACACCACCATGGGTTGTCACACACTGTTGC	+
Preference number: 6 (lower is better) Translates to: SFGQQGLGELFQ*ATPPWVVTHCC Trigger: GCAACAGTGTGTGACAACCCATGGTGGTGTTGCCAATTGGAAAAGCTCACCCAAGCCTTGTTGTCCAAAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS CCA 72 bp	ACTGACTCCTCATTAAGAGCTTTGGACAACAAGGCTTaGGTGAGCTTTTCCAATTGGCAACACCACCATGGG	+
Preference number: 6 (lower is better) Translates to: TDSSLRALDNKA*VSFSNWQHHHG Trigger: CCCATGGTGGTGTTGCCAATTGGAAAAGCTCACCCAAGCCTTGTTGTCCAAAGCTCTTAATGAGGAGTCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS CAA 72 bp	ACAGGGAAACCCTGGAATACAAGCTACACCTCAACGTaGTCTACACACAAGGCAAGGTTGCTTCGCTCTTTC	+
Preference number: 6 (lower is better) Translates to: TGKPWNTSYTST*STHKARLLRSF Trigger: GAAAGAGCGAAGCAACCTTGCCTTGTGTGTAGACAACGTTGAGGTGTAGCTTGTATTCCAGGGTTTCCCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS CAA 90 bp	ATATCTCTGAATATGGAGTTGGGAAGAGTTGCTAACAATCAGCTTTaGGAACTAGCCAGTGTCAGCACATCACTGAATGCTGCTAGGGAG	+
Preference number: 6 (lower is better) Translates to: ISLNMELGRVANNQL*ELASVSTSLNAARE Trigger: CTCCCTAGCAGCATTCAGTGATGTGCTGACACTGGCTAGTTCCAAAAGCTGATTGTTAGCAACTCTTCCCAACTCCATATTCAGAGATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS CAA 72 bp	AATATGGAGTTGGGAAGAGTTGCTAACAATCAGCTTTaGGAACTAGCCAGTGTCAGCACATCACTGAATGCT	+
Preference number: 6 (lower is better) Translates to: NMELGRVANNQL*ELASVSTSLNA Trigger: AGCATTCAGTGATGTGCTGACACTGGCTAGTTCCAAAAGCTGATTGTTAGCAACTCTTCCCAACTCCATATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS CAA 90 bp	CATGACCAGTTTAAAGCTACCAACAGGATATCTCTGAATATGGAGTaGGGAAGAGTTGCTAACAATCAGCTTTTGGAACTAGCCAGTGTC	+
Preference number: 6 (lower is better) Translates to: HDQFKATNRISLNME*GRVANNQLLELASV Trigger: GACACTGGCTAGTTCCAAAAGCTGATTGTTAGCAACTCTTCCCAACTCCATATTCAGAGATATCCTGTTGGTAGCTTTAAACTGGTCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534076.2
CDS TCA 72 bp	ACCATGACCAGTTTAAAGCTACCAACAGGATATCTCTaGATATGGAGTTGGGAAGAGTTGCTAACAATCAGC	+
Preference number: 6 (lower is better) Translates to: TMTSLKLPTGYL*IWSWEELLTIS Trigger: GCTGATTGTTAGCAACTCTTCCCAACTCCATATTCAGAGATATCCTGTTGGTAGCTTTAAACTGGTCATGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534076.2

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