Pregenerated sensors for C1D (Homo sapiens)
Ensembl gene IDs: ENSG00000197223Ensembl transcript IDs: ENST00000355848.7, ENST00000407324.5, ENST00000410067.8, ENST00000470189.2
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR TCA 90 bp | TCAGTGACTTCCTCTTCATGTGTCATAGAAAGAGTTCAACATGCTTTACAAAATACCTGCCATTATGGCTaGCTTAGAAAAATACCTCAC | + |
Preference number: 4 (lower is better) Translates to: SVTSSSCVIERVQHALQNTCHYG*LRKIPH Trigger: GTGAGGTATTTTTCTAAGTCAGCCATAATGGCAGGT...ATTTTGTAAAGCATGTTGAACTCTTTCTATGACACATGAAGAGGAAGTCACTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000355848.7 |
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CDS GCA 90 bp | GCTGTGGTCCCCATCATGTGCTGTAGACTGTCACCGCAGAGCCCTTaGTCACTACCACAGTGGCTGTTCTTTCTGCATGGGTCAGTGCAA | + |
Preference number: 5 (lower is better) Translates to: AVVPIMCCRLSPQSP*SLPQWLFFLHGSVQ Trigger: TTGCACTGACCCATGCAGAAAGAACAGCCACTGTGGTAGTGAGCAAGGGCTCTGCGGTGACAGTCTACAGCACATGATGGGGACCACAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470189.2 |
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CDS CCA 90 bp | TTTCAATCATATAAACAATACACCAGTCCCATTGAGTACTTGCTGTaGTCCCCATCATGTGCTGTAGACTGTCACCGCAGAGCCCTTGCT | + |
Preference number: 5 (lower is better) Translates to: FQSYKQYTSPIEYLL*SPSCAVDCHRRALA Trigger: AGCAAGGGCTCTGCGGTGACAGTCTACAGCACATGATGGGGACCACAGCAAGTACTCAATGGGACTGGTGTATTGTTTATATGATTGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470189.2 |
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CDS CCA 90 bp | CACTTTCCACCCTTCTATCTTTATTCCTTCTTCAAACCTTCTCAGTaGTTTGATGGCAAGGTCCTTGCAGTCATCATGAACCATGAAATC | + |
Preference number: 5 (lower is better) Translates to: HFPPFYLYSFFKPSQ*FDGKVLAVIMNHEI Trigger: GATTTCATGGTTCATGATGACTGCAAGGACCTTGCCATCAAACCACTGAGAAGGTTTGAAGAAGGAATAAAGATAGAAGGGTGGAAAGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000470189.2 |
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CDS TCA 90 bp | CTGAATCATGGAGAGACACTATGCAACTTTAGACTACCTACAGCTTaGCTTTCATTATATGGGAGAATTAACCCATTATTTTCCAGGTCT | + |
Preference number: 5 (lower is better) Translates to: LNHGETLCNFRLPTA*LSLYGRINPLFSRS Trigger: AGACCTGGAAAATAATGGGTTAATTCTCCCATATAATGAAAGTCAAGCTGTAGGTAGTCTAAAGTTGCATAGTGTCTCTCCATGATTCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470189.2 |
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CDS-3UTR CAA 90 bp | TCAGTGACTTCCTCTTCATGTGTCATAGAAAGAGTTCAACATGCTTTACAAAATACAGGTACACTACACTaGATCTTAACAGTAACACAT | + |
Preference number: 5 (lower is better) Translates to: SVTSSSCVIERVQHALQNTGTLH*ILTVTH Trigger: ATGTGTTACTGTTAAGATCAAGTGTAGTGTACCTGT...ATTTTGTAAAGCATGTTGAACTCTTTCTATGACACATGAAGAGGAAGTCACTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000355848.7 ENST00000410067.8 |
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CDS CCA 72 bp | TCACCACTCAGTAAGGTGTGGCTGAGACTGAGTACCTaGGTTGCGGGGATGCTGCCCAGTAACCCTAACAGA | + |
Preference number: 6 (lower is better) Translates to: SPLSKVWLRLST*VAGMLPSNPNR Trigger: TCTGTTAGGGTTACTGGGCAGCATCCCCGCAACCCAGGTACTCAGTCTCAGCCACACCTTACTGAGTGGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000407324.5 |
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CDS CCA 72 bp | AGACTGTCACCGCAGAGCCCTTGCTCACTACCACAGTaGCTGTTCTTTCTGCATGGGTCAGTGCAACCAGGT | + |
Preference number: 6 (lower is better) Translates to: RLSPQSPCSLPQ*LFFLHGSVQPG Trigger: ACCTGGTTGCACTGACCCATGCAGAAAGAACAGCCACTGTGGTAGTGAGCAAGGGCTCTGCGGTGACAGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000470189.2 |
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CDS TCA 72 bp | ATGGGTCAGTGCAACCAGGTAGGTGGGCTTGTACATTaGCTCCTCATCCTTTCTTTCCCAATTGGTGACCTC | + |
Preference number: 6 (lower is better) Translates to: MGQCNQVGGLVH*LLILSFPIGDL Trigger: GAGGTCACCAATTGGGAAAGAAAGGATGAGGAGTCAATGTACAAGCCCACCTACCTGGTTGCACTGACCCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000470189.2 |
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CDS GCA 72 bp | AGAGGTAGAGACAGACGGAGAGGGCATGAGAAAACTTaGTTCTCTTCACCACTCAGTAAGGTGTGGCTGAGA | + |
Preference number: 6 (lower is better) Translates to: RGRDRRRGHEKT*FSSPLSKVWLR Trigger: TCTCAGCCACACCTTACTGAGTGGTGAAGAGAAGCAAGTTTTCTCATGCCCTCTCCGTCTGTCTCTACCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000407324.5 |
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CDS CAA 90 bp | CACCCCTTTCAATCATATAAACAATACACCAGTCCCATTGAGTACTaGCTGTGGTCCCCATCATGTGCTGTAGACTGTCACCGCAGAGCC | + |
Preference number: 6 (lower is better) Translates to: HPFQSYKQYTSPIEY*LWSPSCAVDCHRRA Trigger: GGCTCTGCGGTGACAGTCTACAGCACATGATGGGGACCACAGCAAGTACTCAATGGGACTGGTGTATTGTTTATATGATTGAAAGGGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470189.2 |
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CDS CCA 72 bp | TATAAACAATACACCAGTCCCATTGAGTACTTGCTGTaGTCCCCATCATGTGCTGTAGACTGTCACCGCAGA | + |
Preference number: 6 (lower is better) Translates to: YKQYTSPIEYLL*SPSCAVDCHRR Trigger: TCTGCGGTGACAGTCTACAGCACATGATGGGGACCACAGCAAGTACTCAATGGGACTGGTGTATTGTTTATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470189.2 |
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CDS CAA 72 bp | CAATCATATAAACAATACACCAGTCCCATTGAGTACTaGCTGTGGTCCCCATCATGTGCTGTAGACTGTCAC | + |
Preference number: 6 (lower is better) Translates to: QSYKQYTSPIEY*LWSPSCAVDCH Trigger: GTGACAGTCTACAGCACATGATGGGGACCACAGCAAGTACTCAATGGGACTGGTGTATTGTTTATATGATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470189.2 |
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CDS CCA 72 bp | CCCTTCTATCTTTATTCCTTCTTCAAACCTTCTCAGTaGTTTGATGGCAAGGTCCTTGCAGTCATCATGAAC | + |
Preference number: 6 (lower is better) Translates to: PFYLYSFFKPSQ*FDGKVLAVIMN Trigger: GTTCATGATGACTGCAAGGACCTTGCCATCAAACCACTGAGAAGGTTTGAAGAAGGAATAAAGATAGAAGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000470189.2 |
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CDS TCA 72 bp | GGAGAGACACTATGCAACTTTAGACTACCTACAGCTTaGCTTTCATTATATGGGAGAATTAACCCATTATTT | + |
Preference number: 6 (lower is better) Translates to: GETLCNFRLPTA*LSLYGRINPLF Trigger: AAATAATGGGTTAATTCTCCCATATAATGAAAGTCAAGCTGTAGGTAGTCTAAAGTTGCATAGTGTCTCTCC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000470189.2 |