RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for C1D (Homo sapiens)

Ensembl gene IDs: ENSG00000197223

Ensembl transcript IDs: ENST00000355848.7, ENST00000407324.5, ENST00000410067.8, ENST00000470189.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp TCAGTGACTTCCTCTTCATGTGTCATAGAAAGAGTTCAACATGCTTTACAAAATACCTGCCATTATGGCTaGCTTAGAAAAATACCTCAC +
Preference number: 4 (lower is better)
Translates to: SVTSSSCVIERVQHALQNTCHYG*LRKIPH
Trigger: GTGAGGTATTTTTCTAAGTCAGCCATAATGGCAGGT...ATTTTGTAAAGCATGTTGAACTCTTTCTATGACACATGAAGAGGAAGTCACTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000355848.7
CDS GCA 90 bp GCTGTGGTCCCCATCATGTGCTGTAGACTGTCACCGCAGAGCCCTTaGTCACTACCACAGTGGCTGTTCTTTCTGCATGGGTCAGTGCAA +
Preference number: 5 (lower is better)
Translates to: AVVPIMCCRLSPQSP*SLPQWLFFLHGSVQ
Trigger: TTGCACTGACCCATGCAGAAAGAACAGCCACTGTGGTAGTGAGCAAGGGCTCTGCGGTGACAGTCTACAGCACATGATGGGGACCACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470189.2
CDS CCA 90 bp TTTCAATCATATAAACAATACACCAGTCCCATTGAGTACTTGCTGTaGTCCCCATCATGTGCTGTAGACTGTCACCGCAGAGCCCTTGCT +
Preference number: 5 (lower is better)
Translates to: FQSYKQYTSPIEYLL*SPSCAVDCHRRALA
Trigger: AGCAAGGGCTCTGCGGTGACAGTCTACAGCACATGATGGGGACCACAGCAAGTACTCAATGGGACTGGTGTATTGTTTATATGATTGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470189.2
CDS CCA 90 bp CACTTTCCACCCTTCTATCTTTATTCCTTCTTCAAACCTTCTCAGTaGTTTGATGGCAAGGTCCTTGCAGTCATCATGAACCATGAAATC +
Preference number: 5 (lower is better)
Translates to: HFPPFYLYSFFKPSQ*FDGKVLAVIMNHEI
Trigger: GATTTCATGGTTCATGATGACTGCAAGGACCTTGCCATCAAACCACTGAGAAGGTTTGAAGAAGGAATAAAGATAGAAGGGTGGAAAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470189.2
CDS TCA 90 bp CTGAATCATGGAGAGACACTATGCAACTTTAGACTACCTACAGCTTaGCTTTCATTATATGGGAGAATTAACCCATTATTTTCCAGGTCT +
Preference number: 5 (lower is better)
Translates to: LNHGETLCNFRLPTA*LSLYGRINPLFSRS
Trigger: AGACCTGGAAAATAATGGGTTAATTCTCCCATATAATGAAAGTCAAGCTGTAGGTAGTCTAAAGTTGCATAGTGTCTCTCCATGATTCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470189.2
CDS-3UTR CAA 90 bp TCAGTGACTTCCTCTTCATGTGTCATAGAAAGAGTTCAACATGCTTTACAAAATACAGGTACACTACACTaGATCTTAACAGTAACACAT +
Preference number: 5 (lower is better)
Translates to: SVTSSSCVIERVQHALQNTGTLH*ILTVTH
Trigger: ATGTGTTACTGTTAAGATCAAGTGTAGTGTACCTGT...ATTTTGTAAAGCATGTTGAACTCTTTCTATGACACATGAAGAGGAAGTCACTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000355848.7
ENST00000410067.8
CDS CCA 72 bp TCACCACTCAGTAAGGTGTGGCTGAGACTGAGTACCTaGGTTGCGGGGATGCTGCCCAGTAACCCTAACAGA +
Preference number: 6 (lower is better)
Translates to: SPLSKVWLRLST*VAGMLPSNPNR
Trigger: TCTGTTAGGGTTACTGGGCAGCATCCCCGCAACCCAGGTACTCAGTCTCAGCCACACCTTACTGAGTGGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000407324.5
CDS CCA 72 bp AGACTGTCACCGCAGAGCCCTTGCTCACTACCACAGTaGCTGTTCTTTCTGCATGGGTCAGTGCAACCAGGT +
Preference number: 6 (lower is better)
Translates to: RLSPQSPCSLPQ*LFFLHGSVQPG
Trigger: ACCTGGTTGCACTGACCCATGCAGAAAGAACAGCCACTGTGGTAGTGAGCAAGGGCTCTGCGGTGACAGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470189.2
CDS TCA 72 bp ATGGGTCAGTGCAACCAGGTAGGTGGGCTTGTACATTaGCTCCTCATCCTTTCTTTCCCAATTGGTGACCTC +
Preference number: 6 (lower is better)
Translates to: MGQCNQVGGLVH*LLILSFPIGDL
Trigger: GAGGTCACCAATTGGGAAAGAAAGGATGAGGAGTCAATGTACAAGCCCACCTACCTGGTTGCACTGACCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470189.2
CDS GCA 72 bp AGAGGTAGAGACAGACGGAGAGGGCATGAGAAAACTTaGTTCTCTTCACCACTCAGTAAGGTGTGGCTGAGA +
Preference number: 6 (lower is better)
Translates to: RGRDRRRGHEKT*FSSPLSKVWLR
Trigger: TCTCAGCCACACCTTACTGAGTGGTGAAGAGAAGCAAGTTTTCTCATGCCCTCTCCGTCTGTCTCTACCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000407324.5
CDS CAA 90 bp CACCCCTTTCAATCATATAAACAATACACCAGTCCCATTGAGTACTaGCTGTGGTCCCCATCATGTGCTGTAGACTGTCACCGCAGAGCC +
Preference number: 6 (lower is better)
Translates to: HPFQSYKQYTSPIEY*LWSPSCAVDCHRRA
Trigger: GGCTCTGCGGTGACAGTCTACAGCACATGATGGGGACCACAGCAAGTACTCAATGGGACTGGTGTATTGTTTATATGATTGAAAGGGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000470189.2
CDS CCA 72 bp TATAAACAATACACCAGTCCCATTGAGTACTTGCTGTaGTCCCCATCATGTGCTGTAGACTGTCACCGCAGA +
Preference number: 6 (lower is better)
Translates to: YKQYTSPIEYLL*SPSCAVDCHRR
Trigger: TCTGCGGTGACAGTCTACAGCACATGATGGGGACCACAGCAAGTACTCAATGGGACTGGTGTATTGTTTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470189.2
CDS CAA 72 bp CAATCATATAAACAATACACCAGTCCCATTGAGTACTaGCTGTGGTCCCCATCATGTGCTGTAGACTGTCAC +
Preference number: 6 (lower is better)
Translates to: QSYKQYTSPIEY*LWSPSCAVDCH
Trigger: GTGACAGTCTACAGCACATGATGGGGACCACAGCAAGTACTCAATGGGACTGGTGTATTGTTTATATGATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470189.2
CDS CCA 72 bp CCCTTCTATCTTTATTCCTTCTTCAAACCTTCTCAGTaGTTTGATGGCAAGGTCCTTGCAGTCATCATGAAC +
Preference number: 6 (lower is better)
Translates to: PFYLYSFFKPSQ*FDGKVLAVIMN
Trigger: GTTCATGATGACTGCAAGGACCTTGCCATCAAACCACTGAGAAGGTTTGAAGAAGGAATAAAGATAGAAGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470189.2
CDS TCA 72 bp GGAGAGACACTATGCAACTTTAGACTACCTACAGCTTaGCTTTCATTATATGGGAGAATTAACCCATTATTT +
Preference number: 6 (lower is better)
Translates to: GETLCNFRLPTA*LSLYGRINPLF
Trigger: AAATAATGGGTTAATTCTCCCATATAATGAAAGTCAAGCTGTAGGTAGTCTAAAGTTGCATAGTGTCTCTCC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470189.2