Pregenerated sensors for AGAP5 (Homo sapiens)
Ensembl gene IDs: ENSG00000172650Ensembl transcript IDs: ENST00000607663.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ACACTTAAAACTGACTTGCCCAAGGTCCCACCAAATAGGAGCAGTTTCTCGTCCCAGCAAAGTTTGGAATaGTTGAGCTGGGGTGAAAAT | + |
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Preference number: 2 (lower is better) Translates to: TLKTDLPKVPPNRSSFSSQQSLE*LSWGEN Trigger: ATTTTCACCCCAGCTCAATCATTCCAAACTTTGCTG...GGACGAGAAACTGCTCCTATTTGGTGGGACCTTGGGCAAGTCAGTTTTAAGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000607663.1 |
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| 3UTR-3UTR GCA 90 bp | GAGGTATCTCCAAGGTCACACTTAAAACTGACTTGCCCAAGGTCCCACCAAATAAGAAGCTTTAATATCTaGCTCATCTTCCACATGAGA | + |
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Preference number: 2 (lower is better) Translates to: EVSPRSHLKLTCPRSHQIRSFNI*LIFHMR Trigger: TCTCATGTGGAAGATGAGGCAGATATTAAAGCTTCT...TATTTGGTGGGACCTTGGGCAAGTCAGTTTTAAGTGTGACCTTGGAGATACCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607663.1 |
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| 3UTR-3UTR CAA 90 bp | ACACTTAAAACTGACTTGCCCAAGGTCCCACCAAATAGGAGCAGTTTCTCGTCCTGGGCATCAAGGTTCTaGGTAAACGTTTCCCAGGTG | + |
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Preference number: 3 (lower is better) Translates to: TLKTDLPKVPPNRSSFSSWASRF*VNVSQV Trigger: CACCTGGGAAACGTTTACCAAGAACCTTGATGCCCA...GGACGAGAAACTGCTCCTATTTGGTGGGACCTTGGGCAAGTCAGTTTTAAGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607663.1 |
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| CDS-3UTR TCA 90 bp | GAGGTATCTCCAAGGTCACACTTAAAACTGACTTGCCCAAGGTCCCACCAAATACAGCAAAGTTTGGAATaGTTGAGCTGGGGTGAAAAT | + |
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Preference number: 4 (lower is better) Translates to: EVSPRSHLKLTCPRSHQIQQSLE*LSWGEN Trigger: ATTTTCACCCCAGCTCAATCATTCCAAACTTTGCTG...TATTTGGTGGGACCTTGGGCAAGTCAGTTTTAAGTGTGACCTTGGAGATACCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000607663.1 |
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| CDS-3UTR CCA 90 bp | GAGGTATCTCCAAGGTCACACTTAAAACTGACTTGCCCAAGGTCCCACCAAATAACTCAAATTAAGCAGTaGCTCTCAAACTTTGCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: EVSPRSHLKLTCPRSHQITQIKQ*LSNFAA Trigger: TGCAGCAAAGTTTGAGAGCCACTGCTTAATTTGAGT...TATTTGGTGGGACCTTGGGCAAGTCAGTTTTAAGTGTGACCTTGGAGATACCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607663.1 |
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| CDS-3UTR GCA 90 bp | GAGGTATCTCCAAGGTCACACTTAAAACTGACTTGCCCAAGGTCCCACCAAATAGCTCAAAGATCTATCTaGATCTCTTTGTGTGATATG | + |
|
Preference number: 4 (lower is better) Translates to: EVSPRSHLKLTCPRSHQIAQRSI*ISLCDM Trigger: CATATCACACAAAGAGATGCAGATAGATCTTTGAGC...TATTTGGTGGGACCTTGGGCAAGTCAGTTTTAAGTGTGACCTTGGAGATACCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607663.1 |
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| CDS-3UTR GCA 90 bp | TTCTTGGTAAACGTTTCCCAGGTGATTTCAATCAGCAGCAAAGTTTGGAATGATGCTCTCAAACTTTGCTaGACATTAAAATCGCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: FLVNVSQVISISSKVWNDALKLC*TLKSPE Trigger: CTCAGGCGATTTTAATGTGCAGCAAAGTTTGAGAGC...ATCATTCCAAACTTTGCTGCTGATTGAAATCACCTGGGAAACGTTTACCAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607663.1 |
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| CDS-3UTR GCA 90 bp | AGGTTCTTGGTAAACGTTTCCCAGGTGATTTCAATCAGCAGCAAAGTTTGGAATAGAAGCTTTAATATCTaGCTCATCTTCCACATGAGA | + |
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Preference number: 4 (lower is better) Translates to: RFLVNVSQVISISSKVWNRSFNI*LIFHMR Trigger: TCTCATGTGGAAGATGAGGCAGATATTAAAGCTTCT...ATTCCAAACTTTGCTGCTGATTGAAATCACCTGGGAAACGTTTACCAAGAACCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000607663.1 |
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| CDS-3UTR CAA 90 bp | GTCACACTTAAAACTGACTTGCCCAAGGTCCCACCAAATAGGAGCAGTTTCTCGTGGGCATCAAGGTTCTaGGTAAACGTTTCCCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: VTLKTDLPKVPPNRSSFSWASRF*VNVSQV Trigger: CACCTGGGAAACGTTTACCAAGAACCTTGATGCCCA...CGAGAAACTGCTCCTATTTGGTGGGACCTTGGGCAAGTCAGTTTTAAGTGTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607663.1 |
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| CDS-3UTR CAA 90 bp | GTCACACTTAAAACTGACTTGCCCAAGGTCCCACCAAATAGGAGCAGTTTCTCGAGTGGCTCTCAAACTTaGCTGCACATTAAAATCGCC | + |
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Preference number: 5 (lower is better) Translates to: VTLKTDLPKVPPNRSSFSSGSQT*LHIKIA Trigger: GGCGATTTTAATGTGCAGCAAAGTTTGAGAGCCACT...CGAGAAACTGCTCCTATTTGGTGGGACCTTGGGCAAGTCAGTTTTAAGTGTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000607663.1 |
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| CDS-3UTR CAA 90 bp | TGGCTTTGGGCATCAAGGTTCTTGGTAAACGTTTCCCAGGTGATTTCAATCAGCTCTATCTGCATCTCTTaGTGTGATATGATGAGGTAT | + |
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Preference number: 5 (lower is better) Translates to: WLWASRFLVNVSQVISISSICIS*CDMMRY Trigger: ATACCTCATCATATCACACAAAGAGATGCAGATAGA...GCTGATTGAAATCACCTGGGAAACGTTTACCAAGAACCTTGATGCCCAAAGCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000607663.1 |
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