RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LONP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041168

Ensembl transcript IDs: ENSMUST00000047226.10, ENSMUST00000233732.2

Found 285 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCACGGGCAATGGAGCGTGCAATGCTGGTCTTGCCCACCCCCGGTaGGCCGTGGAAGCAGAGGATCTTGCCTTGTGTGGAGCCTCTGAG +
Preference number: 1 (lower is better)
Translates to: GTGNGACNAGLAHPR*AVEAEDLALCGASE
Trigger: CTCAGAGGCTCCACACAAGGCAAGATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAAGACCAGCATTGCACGCTCCATTGCCCGTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp ATTCTCGGCCAAGGGCACGGGCAATGGAGCGTGCAATGCTGGTCTTaGCCACCCCCGGTGGGCCGTGGAAGCAGAGGATCTTGCCTTGTG +
Preference number: 1 (lower is better)
Translates to: ILGQGHGQWSVQCWS*PPPVGRGSRGSCLV
Trigger: CACAAGGCAAGATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAAGACCAGCATTGCACGCTCCATTGCCCGTGCCCTTGGCCGAGAAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp GCAATGGAGCGTGCAATGCTGGTCTTGCCCACCCCCGGTGGGCCGTaGAAGCAGAGGATCTTGCCTTGTGTGGAGCCTCTGAGCTGGCTG +
Preference number: 1 (lower is better)
Translates to: AMERAMLVLPTPGGP*KQRILPCVEPLSWL
Trigger: CAGCCAGCTCAGAGGCTCCACACAAGGCAAGATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAAGACCAGCATTGCACGCTCCATTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp GGAAGTATTCTCGGCCAAGGGCACGGGCAATGGAGCGTGCAATGCTaGTCTTGCCCACCCCCGGTGGGCCGTGGAAGCAGAGGATCTTGC +
Preference number: 1 (lower is better)
Translates to: GSILGQGHGQWSVQC*SCPPPVGRGSRGSC
Trigger: GCAAGATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAAGACCAGCATTGCACGCTCCATTGCCCGTGCCCTTGGCCGAGAATACTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp AACGGAAGTATTCTCGGCCAAGGGCACGGGCAATGGAGCGTGCAATaGTGGTCTTGCCCACCCCCGGTGGGCCGTGGAAGCAGAGGATCT +
Preference number: 1 (lower is better)
Translates to: NGSILGQGHGQWSVQ*WSCPPPVGRGSRGS
Trigger: AGATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAAGACCAGCATTGCACGCTCCATTGCCCGTGCCCTTGGCCGAGAATACTTCCGTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp ACTGAAACGGAAGTATTCTCGGCCAAGGGCACGGGCAATGGAGCGTaGAATGCTGGTCTTGCCCACCCCCGGTGGGCCGTGGAAGCAGAG +
Preference number: 1 (lower is better)
Translates to: TETEVFSAKGTGNGA*NAGLAHPRWAVEAE
Trigger: CTCTGCTTCCACGGCCCACCGGGGGTGGGCAAGACCAGCATTGCACGCTCCATTGCCCGTGCCCTTGGCCGAGAATACTTCCGTTTCAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp CTGGCCCAGAGCCAGGGACAGCAGTGCAGTGACAATAGTACAGCCTaGGCTGGGACCATCCTTGGGGGTAGCACCCTCAGGCACATGCAG +
Preference number: 1 (lower is better)
Translates to: LAQSQGQQCSDNSTA*AGTILGGSTLRHMQ
Trigger: CTGCATGTGCCTGAGGGTGCTACCCCCAAGGATGGTCCCAGCGCAGGCTGTACTATTGTCACTGCACTGCTGTCCCTGGCTCTGGGCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp ACCTCCTTGGATGTGTCAGTGGCAGCCTCGGTCACCATCTCCAGCTaGGGCTTGGGGCCCAGCTCATCCTCCACCTCTTTCTTGCCTCGC +
Preference number: 1 (lower is better)
Translates to: TSLDVSVAASVTISS*GLGPSSSSTSFLPR
Trigger: GCGAGGCAAGAAAGAGGTGGAGGATGAGCTGGGCCCCAAGCCCCAGCTGGAGATGGTGACCGAGGCTGCCACTGACACATCCAAGGAGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp AGCCAGGTTCTGCAACACTGGCTGGCCCAGAGCCAGGGACAGCAGTaGAGTGACAATAGTACAGCCTGCGCTGGGACCATCCTTGGGGGT +
Preference number: 1 (lower is better)
Translates to: SQVLQHWLAQSQGQQ*SDNSTACAGTILGG
Trigger: ACCCCCAAGGATGGTCCCAGCGCAGGCTGTACTATTGTCACTGCACTGCTGTCCCTGGCTCTGGGCCAGCCAGTGTTGCAGAACCTGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp CACTTTCCCAGCAGCCTGCACAGGAACACGACCAAGCCAGAGGCTTaGGAGACAGCAAGCAGAGGTGGCTATGGGCCATGGCTGTGCGGA +
Preference number: 1 (lower is better)
Translates to: HFPSSLHRNTTKPEA*ETASRGGYGPWLCG
Trigger: TCCGCACAGCCATGGCCCATAGCCACCTCTGCTTGCTGTCTCCCAAGCCTCTGGCTTGGTCGTGTTCCTGTGCAGGCTGCTGGGAAAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp AACACCTTGCCAGTGAGGGAGACCTCCCCAGTCATAGCCAGGTTCTaGAACACTGGCTGGCCCAGAGCCAGGGACAGCAGTGCAGTGACA +
Preference number: 1 (lower is better)
Translates to: NTLPVRETSPVIARF*NTGWPRARDSSAVT
Trigger: TGTCACTGCACTGCTGTCCCTGGCTCTGGGCCAGCCAGTGTTGCAGAACCTGGCTATGACTGGGGAGGTCTCCCTCACTGGCAAGGTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp CTGCAGTATTGCTTGATGAGCAGTGTGAGCACTGCTGCTGACAGCTaGGCCTTGCTCTCATCTAGGCCACACAGGGTGCGGGCCTGTGGC +
Preference number: 1 (lower is better)
Translates to: LQYCLMSSVSTAADS*ALLSSRPHRVRACG
Trigger: GCCACAGGCCCGCACCCTGTGTGGCCTAGATGAGAGCAAGGCCCAGCTGTCAGCAGCAGTGCTCACACTGCTCATCAAGCAATACTGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp CTCTTCCAGAACATCTTGCAGCTCATGGGACTCCGCCCCAGTGAGTaGCGCACCCATGTCGCTCAAGTAGATGGGGTTGTCCACCACACG +
Preference number: 1 (lower is better)
Translates to: LFQNILQLMGLRPSE*RTHVAQVDGVVHHT
Trigger: CGTGTGGTGGACAACCCCATCTACTTGAGCGACATGGGTGCGGCACTCACTGGGGCGGAGTCCCATGAGCTGCAAGATGTTCTGGAAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp GGCCTGTGGCACCAGGTACCGCTCTGCGATGGCCAGCTTCTCCTGTaGTACATAGCCAGACACATTGATCATCTCCATGCGGTCCCTCAG +
Preference number: 1 (lower is better)
Translates to: GLWHQVPLCDGQLLL*YIARHIDHLHAVPQ
Trigger: CTGAGGGACCGCATGGAGATGATCAATGTGTCTGGCTATGTAGCACAGGAGAAGCTGGCCATCGCAGAGCGGTACCTGGTGCCACAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp CAGGAACACGACCAAGCCAGAGGCTTGGGAGACAGCAAGCAGAGGTaGCTATGGGCCATGGCTGTGCGGACTCACTTGAACTCAGAGGAG +
Preference number: 1 (lower is better)
Translates to: QEHDQARGLGDSKQR*LWAMAVRTHLNSEE
Trigger: CTCCTCTGAGTTCAAGTGAGTCCGCACAGCCATGGCCCATAGCCACCTCTGCTTGCTGTCTCCCAAGCCTCTGGCTTGGTCGTGTTCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp CAGGCCTGCTGCAGTCTGAAGCTGCCCTGGCTAGTCCCCAAGCTGTaGACAGCAGCAGTGCTCTGTCAGGGATCTTTGAGAAGTGGTCAC +
Preference number: 1 (lower is better)
Translates to: QACCSLKLPWLVPKL*TAAVLCQGSLRSGH
Trigger: GTGACCACTTCTCAAAGATCCCTGACAGAGCACTGCTGCTGTCCACAGCTTGGGGACTAGCCAGGGCAGCTTCAGACTGCAGCAGGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp GTGAGGGAGACCTCCCCAGTCATAGCCAGGTTCTGCAACACTGGCTaGCCCAGAGCCAGGGACAGCAGTGCAGTGACAATAGTACAGCCT +
Preference number: 1 (lower is better)
Translates to: VRETSPVIARFCNTG*PRARDSSAVTIVQP
Trigger: AGGCTGTACTATTGTCACTGCACTGCTGTCCCTGGCTCTGGGCCAGCCAGTGTTGCAGAACCTGGCTATGACTGGGGAGGTCTCCCTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp GCCAGTGAGGGAGACCTCCCCAGTCATAGCCAGGTTCTGCAACACTaGCTGGCCCAGAGCCAGGGACAGCAGTGCAGTGACAATAGTACA +
Preference number: 1 (lower is better)
Translates to: ASEGDLPSHSQVLQH*LAQSQGQQCSDNST
Trigger: TGTACTATTGTCACTGCACTGCTGTCCCTGGCTCTGGGCCAGCCAGTGTTGCAGAACCTGGCTATGACTGGGGAGGTCTCCCTCACTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp TCTCCACGGCCAGTGCCTCCCTGTGCTCTCGCCGGGGGAAGGCAATaGGGAATATGTCCCGATAGTGTTCCACGAAGTGAACTTCAAGGC +
Preference number: 1 (lower is better)
Translates to: SPRPVPPCALAGGRQ*GICPDSVPRSELQG
Trigger: GCCTTGAAGTTCACTTCGTGGAACACTATCGGGACATATTCCCCATTGCCTTCCCCCGGCGAGAGCACAGGGAGGCACTGGCCGTGGAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 90 bp TGGTCTCTTCCAGAACATCTTGCAGCTCATGGGACTCCGCCCCAGTaGGTGCCGCACCCATGTCGCTCAAGTAGATGGGGTTGTCCACCA +
Preference number: 1 (lower is better)
Translates to: WSLPEHLAAHGTPPQ*VPHPCRSSRWGCPP
Trigger: TGGTGGACAACCCCATCTACTTGAGCGACATGGGTGCGGCACTCACTGGGGCGGAGTCCCATGAGCTGCAAGATGTTCTGGAAGAGACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 90 bp TGGACTCACCACATACTTGCTTCCTGGGCTGCTGTAGACAAAGCCTaGGGATGGGACAGGGTCCCAGAGGCCTTCCACTTTCCCAGCAGC +
Preference number: 1 (lower is better)
Translates to: WTHHILASWAAVDKA*GWDRVPEAFHFPSS
Trigger: GCTGCTGGGAAAGTGGAAGGCCTCTGGGACCCTGTCCCATCCTCAGGCTTTGTCTACAGCAGCCCAGGAAGCAAGTATGTGGTGAGTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp CTCTTTCTTGCCTCGCTTCAGCTTCCTCCTGGACTTTTGTTTCTCTaGCTCTGGCTCAAGCCCCTCTGGTTCCACCTCCAGCTGCCGGCT +
Preference number: 1 (lower is better)
Translates to: LFLASLQLPPGLLFL*LWLKPLWFHLQLPA
Trigger: AGCCGGCAGCTGGAGGTGGAACCAGAGGGGCTTGAGCCAGAGGCAGAGAAACAAAAGTCCAGGAGGAAGCTGAAGCGAGGCAAGAAAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp GGGCCGTGGAAGCAGAGGATCTTGCCTTGTGTGGAGCCTCTGAGCTaGCTGACTGCAATGAACTCCAGGACACGCTTCTTCACATCCTCC +
Preference number: 1 (lower is better)
Translates to: GPWKQRILPCVEPLS*LTAMNSRTRFFTSS
Trigger: GGAGGATGTGAAGAAGCGTGTCCTGGAGTTCATTGCAGTCAGCCAGCTCAGAGGCTCCACACAAGGCAAGATCCTCTGCTTCCACGGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 90 bp TCTGGCTCAAGCCCCTCTGGTTCCACCTCCAGCTGCCGGCTGATGTaGATCCTTCTGTGGCCAGTGACAATCATTCGCAACTTGTCTCCG +
Preference number: 1 (lower is better)
Translates to: SGSSPSGSTSSCRLM*ILLWPVTIIRNLSP
Trigger: CGGAGACAAGTTGCGAATGATTGTCACTGGCCACAGAAGGATTCACATCAGCCGGCAGCTGGAGGTGGAACCAGAGGGGCTTGAGCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp ACCCATGTCGCTCAAGTAGATGGGGTTGTCCACCACACGCTGGCCTaGCTGCATCATCTGCAGCACGGACTCTCTGTACAGAGGGTTCAA +
Preference number: 1 (lower is better)
Translates to: THVAQVDGVVHHTLA*LHHLQHGLSVQRVQ
Trigger: TTGAACCCTCTGTACAGAGAGTCCGTGCTGCAGATGATGCAGGCAGGCCAGCGTGTGGTGGACAACCCCATCTACTTGAGCGACATGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp AGTAGAGCAAGCTTGCTCAGCTCCTCATCCACCACGTCCATCACATaGTTGGGAACCACAAGCTCCCTGAGGCGTTCCCGGAACTTCTCC +
Preference number: 1 (lower is better)
Translates to: SRASLLSSSSTTSIT*LGTTSSLRRSRNFS
Trigger: GGAGAAGTTCCGGGAACGCCTCAGGGAGCTTGTGGTTCCCAAGCATGTGATGGACGTGGTGGATGAGGAGCTGAGCAAGCTTGCTCTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp TCCACCTGCTTCTGTAGGTTGCGCACACCACTCTCCCTGCAGTATTaGTTGATGAGCAGTGTGAGCACTGCTGCTGACAGCTGGGCCTTG +
Preference number: 1 (lower is better)
Translates to: STCFCRLRTPLSLQY*LMSSVSTAADSWAL
Trigger: CAAGGCCCAGCTGTCAGCAGCAGTGCTCACACTGCTCATCAAGCAATACTGCAGGGAGAGTGGTGTGCGCAACCTACAGAAGCAGGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp CAGGGTCCTGCTCCATCAGGAAGGCACGAGCATAGGTGTAGGCTATaGGGGCACTCTCTTTCATCACATCTCCCAGCTGACCTGTCACCT +
Preference number: 1 (lower is better)
Translates to: QGPAPSGRHEHRCRL*GHSLSSHLPADLSP
Trigger: AGGTGACAGGTCAGCTGGGAGATGTGATGAAAGAGAGTGCCCGCATAGCCTACACCTATGCTCGTGCCTTCCTGATGGAGCAGGACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp GTGTTCACAGACTACGTGGACTCACCACATACTTGCTTCCTGGGCTaGTGTAGACAAAGCCTGAGGATGGGACAGGGTCCCAGAGGCCTT +
Preference number: 1 (lower is better)
Translates to: VFTDYVDSPHTCFLG*CRQSLRMGQGPRGL
Trigger: AAGGCCTCTGGGACCCTGTCCCATCCTCAGGCTTTGTCTACAGCAGCCCAGGAAGCAAGTATGTGGTGAGTCCACGTAGTCTGTGAACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 90 bp GCTCTGCGATGGCCAGCTTCTCCTGTGCTACATAGCCAGACACATTaGTCATCTCCATGCGGTCCCTCAGTGGTTCTGGGATGGTGTCAA +
Preference number: 1 (lower is better)
Translates to: ALRWPASPVLHSQTH*SSPCGPSVVLGWCQ
Trigger: TTGACACCATCCCAGAACCACTGAGGGACCGCATGGAGATGATCAATGTGTCTGGCTATGTAGCACAGGAGAAGCTGGCCATCGCAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp GTAGTCCTTTCTGTTCTCAGCAGGCAGAATGATGCAGGTCACACCTaGACGCTTAGCCGCAATGGTCTTCTCCTTGATGCCACCCACAGG +
Preference number: 1 (lower is better)
Translates to: VVLSVLSRQNDAGHT*TLSRNGLLLDATHR
Trigger: CCTGTGGGTGGCATCAAGGAGAAGACCATTGCGGCTAAGCGTGCAGGTGTGACCTGCATCATTCTGCCTGCTGAGAACAGAAAGGACTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp TGTTGTCTGAGCGGACTGAACTTAGGGTCCCAGTACCAGATAGCGTaGAGTATCTTGGCCAGAGCTACCACAGGGTCCCTGAGCAGGAAA +
Preference number: 1 (lower is better)
Translates to: CCLSGLNLGSQYQIA*SILARATTGSLSRK
Trigger: TTTCCTGCTCAGGGACCCTGTGGTAGCTCTGGCCAAGATACTCCACGCTATCTGGTACTGGGACCCTAAGTTCAGTCCGCTCAGACAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp TTGATGATCTTCAACTGCTCCTGCAGCAGGTACTTCCTGTGTGTCTaGTTGATCTTCTCCTCTACCTGTGGCAGGTGGAGCTTGGGCAGG +
Preference number: 1 (lower is better)
Translates to: LMIFNCSCSRYFLCV*LIFSSTCGRWSLGR
Trigger: CCTGCCCAAGCTCCACCTGCCACAGGTAGAGGAGAAGATCAAGCAGACACACAGGAAGTACCTGCTGCAGGAGCAGTTGAAGATCATCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp TCTGCAGTCAGGGCCTTCACTTCCTCTGTGACCTGGAAGTCTTCATaGGCTACATTCTCAACCTCCACCATGAGCACCTCCTTGGATGTG +
Preference number: 1 (lower is better)
Translates to: SAVRAFTSSVTWKSS*ATFSTSTMSTSLDV
Trigger: CACATCCAAGGAGGTGCTCATGGTGGAGGTTGAGAATGTAGCCCATGAAGACTTCCAGGTCACAGAGGAAGTGAAGGCCCTGACTGCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 90 bp GCATCATCTGCAGCACGGACTCTCTGTACAGAGGGTTCAAGGCGATaGTATCCCGAATGGTCTTCACAATCTCTGCAGTCAGGGCCTTCA +
Preference number: 1 (lower is better)
Translates to: ASSAARTLCTEGSRR*YPEWSSQSLQSGPS
Trigger: TGAAGGCCCTGACTGCAGAGATTGTGAAGACCATTCGGGATATCATCGCCTTGAACCCTCTGTACAGAGAGTCCGTGCTGCAGATGATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 90 bp CCTCATCCACCACGTCCATCACATGCTTGGGAACCACAAGCTCCCTaGGGCGTTCCCGGAACTTCTCCTCAATGGCATCTTTATCATCTT +
Preference number: 1 (lower is better)
Translates to: PHPPRPSHAWEPQAP*GVPGTSPQWHLYHL
Trigger: AAGATGATAAAGATGCCATTGAGGAGAAGTTCCGGGAACGCCTCAGGGAGCTTGTGGTTCCCAAGCATGTGATGGACGTGGTGGATGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp TCCTCTTCCCTCCTGTCACCTCACGGCCTAGGCGTTGCTGAAGCTTaGTCAACTCAAACTCCTTCTTCAAGAGAGACAGGGCCTTATAGA +
Preference number: 1 (lower is better)
Translates to: SSSLLSPHGLGVAEA*STQTPSSRETGPYR
Trigger: TCTATAAGGCCCTGTCTCTCTTGAAGAAGGAGTTTGAGTTGAGCAAGCTTCAGCAACGCCTAGGCCGTGAGGTGACAGGAGGGAAGAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp CTATGGAAAAATGAAAGACAGCACATGCTTCCTGTCCCACCACACTaGAGGCTGAGGCAGGAGGACTGCACAAGTACAAGGTTCTGGGTC +
Preference number: 1 (lower is better)
Translates to: LWKNERQHMLPVPPH*RLRQEDCTSTRFWV
Trigger: GACCCAGAACCTTGTACTTGTGCAGTCCTCCTGCCTCAGCCTCCAGTGTGGTGGGACAGGAAGCATGTGCTGTCTTTCATTTTTCCATAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp CAAGCTGTGGACAGCAGCAGTGCTCTGTCAGGGATCTTTGAGAAGTaGTCACTGAGGGAGGCCAGGTGCCATAGTAACAAAGATGGAAGA +
Preference number: 1 (lower is better)
Translates to: QAVDSSSALSGIFEK*SLREARCHSNKDGR
Trigger: TCTTCCATCTTTGTTACTATGGCACCTGGCCTCCCTCAGTGACCACTTCTCAAAGATCCCTGACAGAGCACTGCTGCTGTCCACAGCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp GCTCTGTCAGGGATCTTTGAGAAGTGGTCACTGAGGGAGGCCAGGTaGCATAGTAACAAAGATGGAAGACTAAATCCAGGGTCACAGAGC +
Preference number: 1 (lower is better)
Translates to: ALSGIFEKWSLREAR*HSNKDGRLNPGSQS
Trigger: GCTCTGTGACCCTGGATTTAGTCTTCCATCTTTGTTACTATGGCACCTGGCCTCCCTCAGTGACCACTTCTCAAAGATCCCTGACAGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp CCACACTGGAGGCTGAGGCAGGAGGACTGCACAAGTACAAGGTTCTaGGTCATCCTGTTTCAAAGAGAGGACCCTGAAATGAAAGTGTTA +
Preference number: 1 (lower is better)
Translates to: PHWRLRQEDCTSTRF*VILFQREDPEMKVL
Trigger: TAACACTTTCATTTCAGGGTCCTCTCTTTGAAACAGGATGACCCAGAACCTTGTACTTGTGCAGTCCTCCTGCCTCAGCCTCCAGTGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp TGTAGGCTCCCACAGGCCACCCTGACATGGAATTTGCAGCTTGTTTaGACTGCTGTTGTAATGCCCAAACACACCCAATACACGAGAGTT +
Preference number: 1 (lower is better)
Translates to: CRLPQATLTWNLQLV*TAVVMPKHTQYTRV
Trigger: AACTCTCGTGTATTGGGTGTGTTTGGGCATTACAACAGCAGTCCAAACAAGCTGCAAATTCCATGTCAGGGTGGCCTGTGGGAGCCTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 90 bp CTTCTCAGGAGCTCAACCAACTTCTTATTTTTAACCTCAGAGTGGTaGGATGACAAGCAGGAGTGCGGTTCCAAAAGTTTCTTAGACGCG +
Preference number: 1 (lower is better)
Translates to: LLRSSTNFLFLTSEW*DDKQECGSKSFLDA
Trigger: CGCGTCTAAGAAACTTTTGGAACCGCACTCCTGCTTGTCATCGCACCACTCTGAGGTTAAAAATAAGAAGTTGGTTGAGCTCCTGAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp AACACACCCAATACACGAGAGTTAAACCTGTGTTCTGTTTGTCTTTaGTCTATGCCAGATCATGGTAGCCCAAGCTGGCCTCAAAACTCC +
Preference number: 1 (lower is better)
Translates to: NTPNTRELNLCSVCL*SMPDHGSPSWPQNS
Trigger: GGAGTTTTGAGGCCAGCTTGGGCTACCATGATCTGGCATAGACCAAAGACAAACAGAACACAGGTTTAACTCTCGTGTATTGGGTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 90 bp TTCCTTCTCAGGAGCTCAACCAACTTCTTATTTTTAACCTCAGAGTaGTGCGATGACAAGCAGGAGTGCGGTTCCAAAAGTTTCTTAGAC +
Preference number: 1 (lower is better)
Translates to: FLLRSSTNFLFLTSE*CDDKQECGSKSFLD
Trigger: GTCTAAGAAACTTTTGGAACCGCACTCCTGCTTGTCATCGCACCACTCTGAGGTTAAAAATAAGAAGTTGGTTGAGCTCCTGAGAAGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CCA 90 bp CTCCCCAGTCATAGCCAGGTTCTGCAACACTGGCTGGCCCAGAGCCAGGGACAGGTGGCAGGTGGAGCTTaGGCAGGGTGTGGTGGGGAG +
Preference number: 2 (lower is better)
Translates to: LPSHSQVLQHWLAQSQGQVAGGA*AGCGGE
Trigger: CTCCCCACCACACCCTGCCCAAGCTCCACCTGCCAC...CTGTCCCTGGCTCTGGGCCAGCCAGTGTTGCAGAACCTGGCTATGACTGGGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CCA 90 bp CTCCCCAGTCATAGCCAGGTTCTGCAACACTGGCTGGCCCAGAGCCAGGGACAGCTTGCCCACCCCCGGTaGGCCGTGGAAGCAGAGGAT +
Preference number: 2 (lower is better)
Translates to: LPSHSQVLQHWLAQSQGQLAHPR*AVEAED
Trigger: ATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAAG...CTGTCCCTGGCTCTGGGCCAGCCAGTGTTGCAGAACCTGGCTATGACTGGGGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp GGTCTTGCCCACCCCCGGTGGGCCGTGGAAGCAGAGGATCTTGCCTaGTGTGGAGCCTCTGAGCTGGCTGACTGCAATGAACTCCAGGAC +
Preference number: 2 (lower is better)
Translates to: GLAHPRWAVEAEDLA*CGASELADCNELQD
Trigger: GTCCTGGAGTTCATTGCAGTCAGCCAGCTCAGAGGCTCCACACAAGGCAAGATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAAGACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp TATTCTCGGCCAAGGGCACGGGCAATGGAGCGTGCAATGCTGGTCTaGCCCACCCCCGGTGGGCCGTGGAAGCAGAGGATCTTGCCTTGT +
Preference number: 2 (lower is better)
Translates to: YSRPRARAMERAMLV*PTPGGPWKQRILPC
Trigger: ACAAGGCAAGATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAAGACCAGCATTGCACGCTCCATTGCCCGTGCCCTTGGCCGAGAATA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp TTGGATGTGTCAGTGGCAGCCTCGGTCACCATCTCCAGCTGGGGCTaGGGGCCCAGCTCATCCTCCACCTCTTTCTTGCCTCGCTTCAGC +
Preference number: 2 (lower is better)
Translates to: LDVSVAASVTISSWG*GPSSSSTSFLPRFS
Trigger: GCTGAAGCGAGGCAAGAAAGAGGTGGAGGATGAGCTGGGCCCCAAGCCCCAGCTGGAGATGGTGACCGAGGCTGCCACTGACACATCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp ATGCTGGTCTTGCCCACCCCCGGTGGGCCGTGGAAGCAGAGGATCTaGCCTTGTGTGGAGCCTCTGAGCTGGCTGACTGCAATGAACTCC +
Preference number: 2 (lower is better)
Translates to: MLVLPTPGGPWKQRI*PCVEPLSWLTAMNS
Trigger: GGAGTTCATTGCAGTCAGCCAGCTCAGAGGCTCCACACAAGGCAAGATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAAGACCAGCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR TCA 90 bp CTCCCCAGTCATAGCCAGGTTCTGCAACACTGGCTGGCCCAGAGCCAGGGACAGCCCCAAGTCACTCACTaGCCCAGGCTTCTACCCTGT +
Preference number: 2 (lower is better)
Translates to: LPSHSQVLQHWLAQSQGQPQVTH*PRLLPC
Trigger: ACAGGGTAGAAGCCTGGGTCAGTGAGTGACTTGGGG...CTGTCCCTGGCTCTGGGCCAGCCAGTGTTGCAGAACCTGGCTATGACTGGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CCA 90 bp TGCAGTGACAATAGTACAGCCTGCGCTGGGACCATCCTTGGGGGTAGCACCCTCTCTCCAGCTGGGGCTTaGGGCCCAGCTCATCCTCCA +
Preference number: 2 (lower is better)
Translates to: CSDNSTACAGTILGGSTLSPAGA*GPAHPP
Trigger: TGGAGGATGAGCTGGGCCCCAAGCCCCAGCTGGAGA...GAGGGTGCTACCCCCAAGGATGGTCCCAGCGCAGGCTGTACTATTGTCACTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CCA 90 bp CACGCCAGGAGGTGTGACTTCGTACATGCGCTCCACTGTGAACACAGGCTTCCCCCTGTCCCACCACACTaGAGGCTGAGGCAGGAGGAC +
Preference number: 2 (lower is better)
Translates to: HARRCDFVHALHCEHRLPPVPPH*RLRQED
Trigger: GTCCTCCTGCCTCAGCCTCCAGTGTGGTGGGACAGG...GGGAAGCCTGTGTTCACAGTGGAGCGCATGTACGAAGTCACACCTCCTGGCGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR TCA 90 bp CTCCCCAGTCATAGCCAGGTTCTGCAACACTGGCTGGCCCAGAGCCAGGGACAGTCCCACAGGCCACCCTaGCATGGAATTTGCAGCTTG +
Preference number: 2 (lower is better)
Translates to: LPSHSQVLQHWLAQSQGQSHRPP*HGICSL
Trigger: CAAGCTGCAAATTCCATGTCAGGGTGGCCTGTGGGA...CTGTCCCTGGCTCTGGGCCAGCCAGTGTTGCAGAACCTGGCTATGACTGGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR TCA 90 bp CACGCCAGGAGGTGTGACTTCGTACATGCGCTCCACTGTGAACACAGGCTTCCCCTCAGAGTGGTGCGATaGCAAGCAGGAGTGCGGTTC +
Preference number: 2 (lower is better)
Translates to: HARRCDFVHALHCEHRLPLRVVR*QAGVRF
Trigger: GAACCGCACTCCTGCTTGTCATCGCACCACTCTGAG...GGGAAGCCTGTGTTCACAGTGGAGCGCATGTACGAAGTCACACCTCCTGGCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR TCA 90 bp CTCATCCACCACGTCCATCACATGCTTGGGAACCACAAGCTCCCTGAGGCGTTCCCTCCAGCTGCCGGCTaGTGTGAATCCTTCTGTGGC +
Preference number: 2 (lower is better)
Translates to: LIHHVHHMLGNHKLPEAFPPAAG*CESFCG
Trigger: GCCACAGAAGGATTCACATCAGCCGGCAGCTGGAGG...GAACGCCTCAGGGAGCTTGTGGTTCCCAAGCATGTGATGGACGTGGTGGATGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp ATGATGCAGGTCACACCTGCACGCTTAGCCGCAATGGTCTTCTCCTaGATGCCACCCACAGGCAACACCTTGCCAGTGAGGGAGACCTCC +
Preference number: 2 (lower is better)
Translates to: MMQVTPARLAAMVFS*MPPTGNTLPVRETS
Trigger: GGAGGTCTCCCTCACTGGCAAGGTGTTGCCTGTGGGTGGCATCAAGGAGAAGACCATTGCGGCTAAGCGTGCAGGTGTGACCTGCATCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR TCA 90 bp ATCTTGCAGCTCATGGGACTCCGCCCCAGTGAGTGCCGCACCCATGTCGCTCAACCTTCACTTCCTCTGTaGCCTGGAAGTCTTCATGGG +
Preference number: 2 (lower is better)
Translates to: ILQLMGLRPSECRTHVAQPSLPL*PGSLHG
Trigger: CCCATGAAGACTTCCAGGTCACAGAGGAAGTGAAGG...TTGAGCGACATGGGTGCGGCACTCACTGGGGCGGAGTCCCATGAGCTGCAAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR TCA 90 bp CATAGCCAGGTTCTGCAACACTGGCTGGCCCAGAGCCAGGGACAGCAGTGCAGTATAGCCCTGAACTCTTaGGCCTCCTGGTCCATCTTG +
Preference number: 2 (lower is better)
Translates to: HSQVLQHWLAQSQGQQCSIALNS*ASWSIL
Trigger: CAAGATGGACCAGGAGGCTCAAGAGTTCAGGGCTAT...ACTGCACTGCTGTCCCTGGCTCTGGGCCAGCCAGTGTTGCAGAACCTGGCTATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR GCA 90 bp GGTCCAGCAACTCCAGCAGTGCTGATGACGGGTCCCCTTGGTAGCCTCGGCCAAGGTCTTCACAATCTCTaGAGTCAGGGCCTTCACTTC +
Preference number: 2 (lower is better)
Translates to: GPATPAVLMTGPLGSLGQGLHNL*SQGLHF
Trigger: GAAGTGAAGGCCCTGACTGCAGAGATTGTGAAGACC...TTGGCCGAGGCTACCAAGGGGACCCGTCATCAGCACTGCTGGAGTTGCTGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR GCA 90 bp TGCAGTGACAATAGTACAGCCTGCGCTGGGACCATCCTTGGGGGTAGCACCCTCACTTTCCCAGCAGCCTaGACAGGAACACGACCAAGC +
Preference number: 2 (lower is better)
Translates to: CSDNSTACAGTILGGSTLTFPAA*TGTRPS
Trigger: GCTTGGTCGTGTTCCTGTGCAGGCTGCTGGGAAAGT...GAGGGTGCTACCCCCAAGGATGGTCCCAGCGCAGGCTGTACTATTGTCACTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp GGCCTTATAGAGCCGCTTAAGGATGTTGGTCTCTTCCAGAACATCTaGCAGCTCATGGGACTCCGCCCCAGTGAGTGCCGCACCCATGTC +
Preference number: 2 (lower is better)
Translates to: GLIEPLKDVGLFQNI*QLMGLRPSECRTHV
Trigger: GACATGGGTGCGGCACTCACTGGGGCGGAGTCCCATGAGCTGCAAGATGTTCTGGAAGAGACCAACATCCTTAAGCGGCTCTATAAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp AGAGCAAGCTTGCTCAGCTCCTCATCCACCACGTCCATCACATGCTaGGGAACCACAAGCTCCCTGAGGCGTTCCCGGAACTTCTCCTCA +
Preference number: 2 (lower is better)
Translates to: RASLLSSSSTTSITC*GTTSSLRRSRNFSS
Trigger: TGAGGAGAAGTTCCGGGAACGCCTCAGGGAGCTTGTGGTTCCCAAGCATGTGATGGACGTGGTGGATGAGGAGCTGAGCAAGCTTGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp CTATGGGCCATGGCTGTGCGGACTCACTTGAACTCAGAGGAGTGGTaGTCCAGTAGAGCAAGCTTGCTCAGCTCCTCATCCACCACGTCC +
Preference number: 2 (lower is better)
Translates to: LWAMAVRTHLNSEEW*SSRASLLSSSSTTS
Trigger: GGACGTGGTGGATGAGGAGCTGAGCAAGCTTGCTCTACTGGACAACCACTCCTCTGAGTTCAAGTGAGTCCGCACAGCCATGGCCCATAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp ACCTGCTTCTGTAGGTTGCGCACACCACTCTCCCTGCAGTATTGCTaGATGAGCAGTGTGAGCACTGCTGCTGACAGCTGGGCCTTGCTC +
Preference number: 2 (lower is better)
Translates to: TCFCRLRTPLSLQYC*MSSVSTAADSWALL
Trigger: GAGCAAGGCCCAGCTGTCAGCAGCAGTGCTCACACTGCTCATCAAGCAATACTGCAGGGAGAGTGGTGTGCGCAACCTACAGAAGCAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp TTAGCCGCAATGGTCTTCTCCTTGATGCCACCCACAGGCAACACCTaGCCAGTGAGGGAGACCTCCCCAGTCATAGCCAGGTTCTGCAAC +
Preference number: 2 (lower is better)
Translates to: LAAMVFSLMPPTGNT*PVRETSPVIARFCN
Trigger: GTTGCAGAACCTGGCTATGACTGGGGAGGTCTCCCTCACTGGCAAGGTGTTGCCTGTGGGTGGCATCAAGGAGAAGACCATTGCGGCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR GCA 90 bp TGCAGTGACAATAGTACAGCCTGCGCTGGGACCATCCTTGGGGGTAGCACCCTCTCTGAGCTGGCTGACTaGAATGAACTCCAGGACACG +
Preference number: 2 (lower is better)
Translates to: CSDNSTACAGTILGGSTLSELAD*NELQDT
Trigger: CGTGTCCTGGAGTTCATTGCAGTCAGCCAGCTCAGA...GAGGGTGCTACCCCCAAGGATGGTCCCAGCGCAGGCTGTACTATTGTCACTGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp TTCTCAGGTGTCACCTGTACTGTCTGGGCCTCCCCACTTACGATCTaGTATGCAGCCTTGCGCAGCACCTTCTCCACCTGCTTCTGTAGG +
Preference number: 2 (lower is better)
Translates to: FSGVTCTVWASPLTI*YAALRSTFSTCFCR
Trigger: CCTACAGAAGCAGGTGGAGAAGGTGCTGCGCAAGGCTGCATACAAGATCGTAAGTGGGGAGGCCCAGACAGTACAGGTGACACCTGAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR GCA 90 bp GACAGCAGTGCAGTGACAATAGTACAGCCTGCGCTGGGACCATCCTTGGGGGTAGTGCCCCTTGATTTCTaGCACATCTGTCATGCCACC +
Preference number: 2 (lower is better)
Translates to: DSSAVTIVQPALGPSLGVVPLDF*HICHAT
Trigger: GGTGGCATGACAGATGTGGCAGAAATCAAGGGGCAC...TACCCCCAAGGATGGTCCCAGCGCAGGCTGTACTATTGTCACTGCACTGCTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR GCA 90 bp AGGCACGAGCATAGGTGTAGGCTATGCGGGCACTCTCTTTCATCACATCTCCCACCTGCTTCTGTAGGTTaGGCACACCACTCTCCCTGC +
Preference number: 2 (lower is better)
Translates to: RHEHRCRLCGHSLSSHLPPASVG*AHHSPC
Trigger: GCAGGGAGAGTGGTGTGCGCAACCTACAGAAGCAGG...TGGGAGATGTGATGAAAGAGAGTGCCCGCATAGCCTACACCTATGCTCGTGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CCA 90 bp TCCACTGTGAACACAGGCTTCCCAACAAAGTCTTGTAGGTTCTCAGGTGTCACCGCCGGCCCCATGGGATaGATGTCAGCCAGTCCAGGT +
Preference number: 2 (lower is better)
Translates to: STVNTGFPTKSCRFSGVTAGPMG*MSASPG
Trigger: ACCTGGACTGGCTGACATCCATCCCATGGGGCCGGC...GGTGACACCTGAGAACCTACAAGACTTTGTTGGGAAGCCTGTGTTCACAGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp ATGATCTTCAACTGCTCCTGCAGCAGGTACTTCCTGTGTGTCTGCTaGATCTTCTCCTCTACCTGTGGCAGGTGGAGCTTGGGCAGGGTG +
Preference number: 2 (lower is better)
Translates to: MIFNCSCSRYFLCVC*IFSSTCGRWSLGRV
Trigger: CACCCTGCCCAAGCTCCACCTGCCACAGGTAGAGGAGAAGATCAAGCAGACACACAGGAAGTACCTGCTGCAGGAGCAGTTGAAGATCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp CGGACTCACTTGAACTCAGAGGAGTGGTTGTCCAGTAGAGCAAGCTaGCTCAGCTCCTCATCCACCACGTCCATCACATGCTTGGGAACC +
Preference number: 2 (lower is better)
Translates to: RTHLNSEEWLSSRAS*LSSSSTTSITCLGT
Trigger: GGTTCCCAAGCATGTGATGGACGTGGTGGATGAGGAGCTGAGCAAGCTTGCTCTACTGGACAACCACTCCTCTGAGTTCAAGTGAGTCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR TCA 90 bp GACAGCAGTGCAGTGACAATAGTACAGCCTGCGCTGGGACCATCCTTGGGGGTACATTGGCCGTGCAGATaGATAGCACCTTGGACAGAT +
Preference number: 2 (lower is better)
Translates to: DSSAVTIVQPALGPSLGVHWPCR*IAPWTD
Trigger: ATCTGTCCAAGGTGCTATTCATCTGCACGGCCAATG...TACCCCCAAGGATGGTCCCAGCGCAGGCTGTACTATTGTCACTGCACTGCTGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CCA 90 bp AGGCACGAGCATAGGTGTAGGCTATGCGGGCACTCTCTTTCATCACATCTCCCAGGGATCTTTGAGAAGTaGTCACTGAGGGAGGCCAGG +
Preference number: 2 (lower is better)
Translates to: RHEHRCRLCGHSLSSHLPGIFEK*SLREAR
Trigger: CCTGGCCTCCCTCAGTGACCACTTCTCAAAGATCCC...TGGGAGATGTGATGAAAGAGAGTGCCCGCATAGCCTACACCTATGCTCGTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp CCAATCTTGTCCACCTCATCAATGAGCACTAGCGGGTTCTCTGTCTaGGTCTTCTTCAGACACTGGATGATCTTCCCAGGCATGGCCCCC +
Preference number: 2 (lower is better)
Translates to: PILSTSSMSTSGFSV*VFFRHWMIFPGMAP
Trigger: GGGGGCCATGCCTGGGAAGATCATCCAGTGTCTGAAGAAGACCAAGACAGAGAACCCGCTAGTGCTCATTGATGAGGTGGACAAGATTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 90 bp ATCTCCATGCGGTCCCTCAGTGGTTCTGGGATGGTGTCAATGACATaGGCCGTGCAGATGAATAGCACCTTGGACAGATCCACTGGCACA +
Preference number: 2 (lower is better)
Translates to: ISMRSLSGSGMVSMT*AVQMNSTLDRSTGT
Trigger: TGTGCCAGTGGATCTGTCCAAGGTGCTATTCATCTGCACGGCCAATGTCATTGACACCATCCCAGAACCACTGAGGGACCGCATGGAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR GCA 90 bp AGGCACGAGCATAGGTGTAGGCTATGCGGGCACTCTCTTTCATCACATCTCCCAGGACTTTTGTTTCTCTaGCTCTGGCTCAAGCCCCTC +
Preference number: 2 (lower is better)
Translates to: RHEHRCRLCGHSLSSHLPGLLFL*LWLKPL
Trigger: GAGGGGCTTGAGCCAGAGGCAGAGAAACAAAAGTCC...TGGGAGATGTGATGAAAGAGAGTGCCCGCATAGCCTACACCTATGCTCGTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CCA 90 bp CACAGAGCATCCTCAGGTCAGAATTTCAACTCAGTAGTGTTGTCTGAGCGGACTTCTACCTGTGGCAGGTaGAGCTTGGGCAGGGTGTGG +
Preference number: 2 (lower is better)
Translates to: HRASSGQNFNSVVLSERTSTCGR*SLGRVW
Trigger: CCACACCCTGCCCAAGCTCCACCTGCCACAGGTAGA...AGTCCGCTCAGACAACACTACTGAGTTGAAATTCTGACCTGAGGATGCTCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CCA 90 bp AGGCACGAGCATAGGTGTAGGCTATGCGGGCACTCTCTTTCATCACATCTCCCACTTGGACAGATCCACTaGCACATCCAGGTAGTGGTC +
Preference number: 2 (lower is better)
Translates to: RHEHRCRLCGHSLSSHLPLGQIH*HIQVVV
Trigger: GACCACTACCTGGATGTGCCAGTGGATCTGTCCAAG...TGGGAGATGTGATGAAAGAGAGTGCCCGCATAGCCTACACCTATGCTCGTGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CCA 90 bp AGGCACGAGCATAGGTGTAGGCTATGCGGGCACTCTCTTTCATCACATCTCCCACATGCGGTCCCTCAGTaGTTCTGGGATGGTGTCAAT +
Preference number: 2 (lower is better)
Translates to: RHEHRCRLCGHSLSSHLPHAVPQ*FWDGVN
Trigger: ATTGACACCATCCCAGAACCACTGAGGGACCGCATG...TGGGAGATGTGATGAAAGAGAGTGCCCGCATAGCCTACACCTATGCTCGTGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR TCA 90 bp CATAGCCAGGTTCTGCAACACTGGCTGGCCCAGAGCCAGGGACAGCAGTGCAGTGGTTTTCTTTATTCATaGTTCTACAGCTGTGCTCGT +
Preference number: 2 (lower is better)
Translates to: HSQVLQHWLAQSQGQQCSGFLYS*FYSCAR
Trigger: ACGAGCACAGCTGTAGAATCATGAATAAAGAAAACC...ACTGCACTGCTGTCCCTGGCTCTGGGCCAGCCAGTGTTGCAGAACCTGGCTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR TCA 90 bp TGTAGGCTCCCACAGGCCACCCTGACATGGAATTTGCAGCTTGTTTGGACTGCTGAGGGTTCAAGGCGATaGTATCCCGAATGGTCTTCA +
Preference number: 2 (lower is better)
Translates to: CRLPQATLTWNLQLVWTAEGSRR*YPEWSS
Trigger: TGAAGACCATTCGGGATATCATCGCCTTGAACCCTC...AGCAGTCCAAACAAGCTGCAAATTCCATGTCAGGGTGGCCTGTGGGAGCCTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR GCA 90 bp CACAGAGCATCCTCAGGTCAGAATTTCAACTCAGTAGTGTTGTCTGAGCGGACTCTGAGGCAGGAGGACTaGACAAGTACAAGGTTCTGG +
Preference number: 2 (lower is better)
Translates to: HRASSGQNFNSVVLSERTLRQED*TSTRFW
Trigger: CCAGAACCTTGTACTTGTGCAGTCCTCCTGCCTCAG...AGTCCGCTCAGACAACACTACTGAGTTGAAATTCTGACCTGAGGATGCTCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CCA 90 bp TCCACTGTGAACACAGGCTTCCCAACAAAGTCTTGTAGGTTCTCAGGTGTCACCAATTTGCAGCTTGTTTaGACTGCTGTTGTAATGCCC +
Preference number: 2 (lower is better)
Translates to: STVNTGFPTKSCRFSGVTNLQLV*TAVVMP
Trigger: GGGCATTACAACAGCAGTCCAAACAAGCTGCAAATT...GGTGACACCTGAGAACCTACAAGACTTTGTTGGGAAGCCTGTGTTCACAGTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp CAAGGGCACGGGCAATGGAGCGTGCAATGCTGGTCTTaGCCACCCCCGGTGGGCCGTGGAAGCAGAGGATCT +
Preference number: 3 (lower is better)
Translates to: QGHGQWSVQCWS*PPPVGRGSRGS
Trigger: AGATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAAGACCAGCATTGCACGCTCCATTGCCCGTGCCCTTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp GAAGTATTCTCGGCCAAGGGCACGGGCAATGGAGCGTaGAATGCTGGTCTTGCCCACCCCCGGTGGGCCGTG +
Preference number: 3 (lower is better)
Translates to: EVFSAKGTGNGA*NAGLAHPRWAV
Trigger: CACGGCCCACCGGGGGTGGGCAAGACCAGCATTGCACGCTCCATTGCCCGTGCCCTTGGCCGAGAATACTTC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp ACAGCTGGGCCTTGCTCTCATCTAGGCCACACAGGGTaGGGGCCTGTGGCACCAGGTACCGCTCTGCGATGG +
Preference number: 3 (lower is better)
Translates to: TAGPCSHLGHTG*GPVAPGTALRW
Trigger: CCATCGCAGAGCGGTACCTGGTGCCACAGGCCCGCACCCTGTGTGGCCTAGATGAGAGCAAGGCCCAGCTGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp CGTGCAATGCTGGTCTTGCCCACCCCCGGTGGGCCGTaGAAGCAGAGGATCTTGCCTTGTGTGGAGCCTCTG +
Preference number: 3 (lower is better)
Translates to: RAMLVLPTPGGP*KQRILPCVEPL
Trigger: CAGAGGCTCCACACAAGGCAAGATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAAGACCAGCATTGCACG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp GATGTGTCAGTGGCAGCCTCGGTCACCATCTCCAGCTaGGGCTTGGGGCCCAGCTCATCCTCCACCTCTTTC +
Preference number: 3 (lower is better)
Translates to: DVSVAASVTISS*GLGPSSSSTSF
Trigger: GAAAGAGGTGGAGGATGAGCTGGGCCCCAAGCCCCAGCTGGAGATGGTGACCGAGGCTGCCACTGACACATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp GGAGACCTCCCCAGTCATAGCCAGGTTCTGCAACACTaGCTGGCCCAGAGCCAGGGACAGCAGTGCAGTGAC +
Preference number: 3 (lower is better)
Translates to: GDLPSHSQVLQH*LAQSQGQQCSD
Trigger: GTCACTGCACTGCTGTCCCTGGCTCTGGGCCAGCCAGTGTTGCAGAACCTGGCTATGACTGGGGAGGTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp GGGTTGTCCACCACACGCTGGCCTGCCTGCATCATCTaGAGCACGGACTCTCTGTACAGAGGGTTCAAGGCG +
Preference number: 3 (lower is better)
Translates to: GLSTTRWPACII*STDSLYRGFKA
Trigger: CGCCTTGAACCCTCTGTACAGAGAGTCCGTGCTGCAGATGATGCAGGCAGGCCAGCGTGTGGTGGACAACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp CTGCAACACTGGCTGGCCCAGAGCCAGGGACAGCAGTaGAGTGACAATAGTACAGCCTGCGCTGGGACCATC +
Preference number: 3 (lower is better)
Translates to: LQHWLAQSQGQQ*SDNSTACAGTI
Trigger: GATGGTCCCAGCGCAGGCTGTACTATTGTCACTGCACTGCTGTCCCTGGCTCTGGGCCAGCCAGTGTTGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp AGCAGCCTGCACAGGAACACGACCAAGCCAGAGGCTTaGGAGACAGCAAGCAGAGGTGGCTATGGGCCATGG +
Preference number: 3 (lower is better)
Translates to: SSLHRNTTKPEA*ETASRGGYGPW
Trigger: CCATGGCCCATAGCCACCTCTGCTTGCTGTCTCCCAAGCCTCTGGCTTGGTCGTGTTCCTGTGCAGGCTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp AATGGAGCGTGCAATGCTGGTCTTGCCCACCCCCGGTaGGCCGTGGAAGCAGAGGATCTTGCCTTGTGTGGA +
Preference number: 3 (lower is better)
Translates to: NGACNAGLAHPR*AVEAEDLALCG
Trigger: TCCACACAAGGCAAGATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAAGACCAGCATTGCACGCTCCATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 72 bp CCAGAACATCTTGCAGCTCATGGGACTCCGCCCCAGTaGGTGCCGCACCCATGTCGCTCAAGTAGATGGGGT +
Preference number: 3 (lower is better)
Translates to: PEHLAAHGTPPQ*VPHPCRSSRWG
Trigger: ACCCCATCTACTTGAGCGACATGGGTGCGGCACTCACTGGGGCGGAGTCCCATGAGCTGCAAGATGTTCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp AGCTTGCTCAGCTCCTCATCCACCACGTCCATCACATaGTTGGGAACCACAAGCTCCCTGAGGCGTTCCCGG +
Preference number: 3 (lower is better)
Translates to: SLLSSSSTTSIT*LGTTSSLRRSR
Trigger: CCGGGAACGCCTCAGGGAGCTTGTGGTTCCCAAGCATGTGATGGACGTGGTGGATGAGGAGCTGAGCAAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp GACCAAGCCAGAGGCTTGGGAGACAGCAAGCAGAGGTaGCTATGGGCCATGGCTGTGCGGACTCACTTGAAC +
Preference number: 3 (lower is better)
Translates to: DQARGLGDSKQR*LWAMAVRTHLN
Trigger: GTTCAAGTGAGTCCGCACAGCCATGGCCCATAGCCACCTCTGCTTGCTGTCTCCCAAGCCTCTGGCTTGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp TGCTTGATGAGCAGTGTGAGCACTGCTGCTGACAGCTaGGCCTTGCTCTCATCTAGGCCACACAGGGTGCGG +
Preference number: 3 (lower is better)
Translates to: CLMSSVSTAADS*ALLSSRPHRVR
Trigger: CCGCACCCTGTGTGGCCTAGATGAGAGCAAGGCCCAGCTGTCAGCAGCAGTGCTCACACTGCTCATCAAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CAA 90 bp GACAGCAGTGCAGTGACAATAGTACAGCCTGCGCTGGGACCATCCTTGGGGGTAGCAGAGGATCTTGCCTaGTGTGGAGCCTCTGAGCTG +
Preference number: 3 (lower is better)
Translates to: DSSAVTIVQPALGPSLGVAEDLA*CGASEL
Trigger: CAGCTCAGAGGCTCCACACAAGGCAAGATCCTCTGC...TACCCCCAAGGATGGTCCCAGCGCAGGCTGTACTATTGTCACTGCACTGCTGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CAA 90 bp CAGGAAGGCACGAGCATAGGTGTAGGCTATGCGGGCACTCTCTTTCATCACATCCCATCCTTGTCCTCCTaGCTGCCACTAGGCTGGGGC +
Preference number: 3 (lower is better)
Translates to: QEGTSIGVGYAGTLFHHIPSLSS*LPLGWG
Trigger: GCCCCAGCCTAGTGGCAGCAAGGAGGACAAGGATGG...GATGTGATGAAAGAGAGTGCCCGCATAGCCTACACCTATGCTCGTGCCTTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp GCTCAAGTAGATGGGGTTGTCCACCACACGCTGGCCTaGCTGCATCATCTGCAGCACGGACTCTCTGTACAG +
Preference number: 3 (lower is better)
Translates to: AQVDGVVHHTLA*LHHLQHGLSVQ
Trigger: CTGTACAGAGAGTCCGTGCTGCAGATGATGCAGGCAGGCCAGCGTGTGGTGGACAACCCCATCTACTTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp AACATCTTGCAGCTCATGGGACTCCGCCCCAGTGAGTaGCGCACCCATGTCGCTCAAGTAGATGGGGTTGTC +
Preference number: 3 (lower is better)
Translates to: NILQLMGLRPSE*RTHVAQVDGVV
Trigger: GACAACCCCATCTACTTGAGCGACATGGGTGCGGCACTCACTGGGGCGGAGTCCCATGAGCTGCAAGATGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp CTTCAGCTTCCTCCTGGACTTTTGTTTCTCTGCCTCTaGCTCAAGCCCCTCTGGTTCCACCTCCAGCTGCCG +
Preference number: 3 (lower is better)
Translates to: LQLPPGLLFLCL*LKPLWFHLQLP
Trigger: CGGCAGCTGGAGGTGGAACCAGAGGGGCTTGAGCCAGAGGCAGAGAAACAAAAGTCCAGGAGGAAGCTGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp CCAGTGCCTCCCTGTGCTCTCGCCGGGGGAAGGCAATaGGGAATATGTCCCGATAGTGTTCCACGAAGTGAA +
Preference number: 3 (lower is better)
Translates to: PVPPCALAGGRQ*GICPDSVPRSE
Trigger: TTCACTTCGTGGAACACTATCGGGACATATTCCCCATTGCCTTCCCCCGGCGAGAGCACAGGGAGGCACTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 72 bp GCTATGCGGGCACTCTCTTTCATCACATCTCCCAGCTaGCCTGTCACCTCTAGGCTGCCATCCTTGTCCTCC +
Preference number: 3 (lower is better)
Translates to: AMRALSFITSPS*PVTSRLPSLSS
Trigger: GGAGGACAAGGATGGCAGCCTAGAGGTGACAGGTCAGCTGGGAGATGTGATGAAAGAGAGTGCCCGCATAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp AGCCGCTTAAGGATGTTGGTCTCTTCCAGAACATCTTaGAGCTCATGGGACTCCGCCCCAGTGAGTGCCGCA +
Preference number: 3 (lower is better)
Translates to: SRLRMLVSSRTS*SSWDSAPVSAA
Trigger: TGCGGCACTCACTGGGGCGGAGTCCCATGAGCTGCAAGATGTTCTGGAAGAGACCAACATCCTTAAGCGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp GACTACGTGGACTCACCACATACTTGCTTCCTGGGCTaGTGTAGACAAAGCCTGAGGATGGGACAGGGTCCC +
Preference number: 3 (lower is better)
Translates to: DYVDSPHTCFLG*CRQSLRMGQGP
Trigger: GGGACCCTGTCCCATCCTCAGGCTTTGTCTACAGCAGCCCAGGAAGCAAGTATGTGGTGAGTCCACGTAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp CTGTACTGTCTGGGCCTCCCCACTTACGATCTTGTATaGAGCCTTGCGCAGCACCTTCTCCACCTGCTTCTG +
Preference number: 3 (lower is better)
Translates to: LYCLGLPTYDLV*SLAQHLLHLLL
Trigger: CAGAAGCAGGTGGAGAAGGTGCTGCGCAAGGCTGCATACAAGATCGTAAGTGGGGAGGCCCAGACAGTACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp AGCGGACTGAACTTAGGGTCCCAGTACCAGATAGCGTaGAGTATCTTGGCCAGAGCTACCACAGGGTCCCTG +
Preference number: 3 (lower is better)
Translates to: SGLNLGSQYQIA*SILARATTGSL
Trigger: CAGGGACCCTGTGGTAGCTCTGGCCAAGATACTCCACGCTATCTGGTACTGGGACCCTAAGTTCAGTCCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp TGCAGTCTGAAGCTGCCCTGGCTAGTCCCCAAGCTGTaGACAGCAGCAGTGCTCTGTCAGGGATCTTTGAGA +
Preference number: 3 (lower is better)
Translates to: CSLKLPWLVPKL*TAAVLCQGSLR
Trigger: TCTCAAAGATCCCTGACAGAGCACTGCTGCTGTCCACAGCTTGGGGACTAGCCAGGGCAGCTTCAGACTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 72 bp AGAGGTGGCTATGGGCCATGGCTGTGCGGACTCACTTaGACTCAGAGGAGTGGTTGTCCAGTAGAGCAAGCT +
Preference number: 3 (lower is better)
Translates to: RGGYGPWLCGLT*TQRSGCPVEQA
Trigger: AGCTTGCTCTACTGGACAACCACTCCTCTGAGTTCAAGTGAGTCCGCACAGCCATGGCCCATAGCCACCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 72 bp CACATACTTGCTTCCTGGGCTGCTGTAGACAAAGCCTaGGGATGGGACAGGGTCCCAGAGGCCTTCCACTTT +
Preference number: 3 (lower is better)
Translates to: HILASWAAVDKA*GWDRVPEAFHF
Trigger: AAAGTGGAAGGCCTCTGGGACCCTGTCCCATCCTCAGGCTTTGTCTACAGCAGCCCAGGAAGCAAGTATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp CCTGTCCCACCACACTGGAGGCTGAGGCAGGAGGACTaGACAAGTACAAGGTTCTGGGTCATCCTGTTTCAA +
Preference number: 3 (lower is better)
Translates to: PVPPHWRLRQED*TSTRFWVILFQ
Trigger: TTGAAACAGGATGACCCAGAACCTTGTACTTGTGCAGTCCTCCTGCCTCAGCCTCCAGTGTGGTGGGACAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp CACCAGGTACCGCTCTGCGATGGCCAGCTTCTCCTGTaGTACATAGCCAGACACATTGATCATCTCCATGCG +
Preference number: 3 (lower is better)
Translates to: HQVPLCDGQLLL*YIARHIDHLHA
Trigger: CGCATGGAGATGATCAATGTGTCTGGCTATGTAGCACAGGAGAAGCTGGCCATCGCAGAGCGGTACCTGGTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp GCTCCATCAGGAAGGCACGAGCATAGGTGTAGGCTATaGGGGCACTCTCTTTCATCACATCTCCCAGCTGAC +
Preference number: 3 (lower is better)
Translates to: APSGRHEHRCRL*GHSLSSHLPAD
Trigger: GTCAGCTGGGAGATGTGATGAAAGAGAGTGCCCGCATAGCCTACACCTATGCTCGTGCCTTCCTGATGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp CTGGGACCATCCTTGGGGGTAGCACCCTCAGGCACATaGAGGTGGATGTGTGAGGTGACTAGGAAGTCATTT +
Preference number: 3 (lower is better)
Translates to: LGPSLGVAPSGT*RWMCEVTRKSF
Trigger: AAATGACTTCCTAGTCACCTCACACATCCACCTGCATGTGCCTGAGGGTGCTACCCCCAAGGATGGTCCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp GCCATGGCTGTGCGGACTCACTTGAACTCAGAGGAGTaGTTGTCCAGTAGAGCAAGCTTGCTCAGCTCCTCA +
Preference number: 3 (lower is better)
Translates to: AMAVRTHLNSEE*LSSRASLLSSS
Trigger: TGAGGAGCTGAGCAAGCTTGCTCTACTGGACAACCACTCCTCTGAGTTCAAGTGAGTCCGCACAGCCATGGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp AGGCTGCCATCCTTGTCCTCCTTGCTGCCACTAGGCTaGGGCCGCCTCAAAGATGTCTCCACAAACAATGTA +
Preference number: 3 (lower is better)
Translates to: RLPSLSSLLPLG*GRLKDVSTNNV
Trigger: TACATTGTTTGTGGAGACATCTTTGAGGCGGCCCCAGCCTAGTGGCAGCAAGGAGGACAAGGATGGCAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp CCATCCTTGGGGGTAGCACCCTCAGGCACATGCAGGTaGATGTGTGAGGTGACTAGGAAGTCATTTTCAGGG +
Preference number: 3 (lower is better)
Translates to: PSLGVAPSGTCR*MCEVTRKSFSG
Trigger: CCCTGAAAATGACTTCCTAGTCACCTCACACATCCACCTGCATGTGCCTGAGGGTGCTACCCCCAAGGATGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CAA 90 bp GCCTTCACTTCCTCTGTGACCTGGAAGTCTTCATGGGCTACATTCTCAACCTCCACCATGAGCACCTCCTaGGATGTGTCAGTGGCAGCC +
Preference number: 3 (lower is better)
Translates to: AFTSSVTWKSSWATFSTSTMSTS*DVSVAA
Trigger: GGCTGCCACTGACACATCCAAGGAGGTGCTCATGGT...GGAGGTTGAGAATGTAGCCCATGAAGACTTCCAGGTCACAGAGGAAGTGAAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CAA 90 bp CTCCCCAGTCATAGCCAGGTTCTGCAACACTGGCTGGCCCAGAGCCAGGGACAGAAACCTGTGTTCTGTTaGTCTTTGGTCTATGCCAGA +
Preference number: 3 (lower is better)
Translates to: LPSHSQVLQHWLAQSQGQKPVFC*SLVYAR
Trigger: TCTGGCATAGACCAAAGACAAACAGAACACAGGTTT...CTGTCCCTGGCTCTGGGCCAGCCAGTGTTGCAGAACCTGGCTATGACTGGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CAA 90 bp CAGGAAGGCACGAGCATAGGTGTAGGCTATGCGGGCACTCTCTTTCATCACATCTCCAGTAGAGCAAGCTaGCTCAGCTCCTCATCCACC +
Preference number: 3 (lower is better)
Translates to: QEGTSIGVGYAGTLFHHISSRAS*LSSSST
Trigger: GGTGGATGAGGAGCTGAGCAAGCTTGCTCTACTGGA...GATGTGATGAAAGAGAGTGCCCGCATAGCCTACACCTATGCTCGTGCCTTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 72 bp TGGCCAGCTTCTCCTGTGCTACATAGCCAGACACATTaGTCATCTCCATGCGGTCCCTCAGTGGTTCTGGGA +
Preference number: 3 (lower is better)
Translates to: WPASPVLHSQTH*SSPCGPSVVLG
Trigger: TCCCAGAACCACTGAGGGACCGCATGGAGATGATCAATGTGTCTGGCTATGTAGCACAGGAGAAGCTGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp CTCCTGTCACCTCACGGCCTAGGCGTTGCTGAAGCTTaGTCAACTCAAACTCCTTCTTCAAGAGAGACAGGG +
Preference number: 3 (lower is better)
Translates to: LLSPHGLGVAEA*STQTPSSRETG
Trigger: CCCTGTCTCTCTTGAAGAAGGAGTTTGAGTTGAGCAAGCTTCAGCAACGCCTAGGCCGTGAGGTGACAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp TCTAAAGTGGTGCTAGGAACTGGAGGTCCTCACACATaGTACCTGAACCCCAAGTCACTCACTGACCCAGGC +
Preference number: 3 (lower is better)
Translates to: SKVVLGTGGPHT*YLNPKSLTDPG
Trigger: GCCTGGGTCAGTGAGTGACTTGGGGTTCAGGTAGCATGTGTGAGGACCTCCAGTTCCTAGCACCACTTTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp GATCTTGCCTTGTGTGGAGCCTCTGAGCTGGCTGACTaGAATGAACTCCAGGACACGCTTCTTCACATCCTC +
Preference number: 3 (lower is better)
Translates to: DLALCGASELAD*NELQDTLLHIL
Trigger: GAGGATGTGAAGAAGCGTGTCCTGGAGTTCATTGCAGTCAGCCAGCTCAGAGGCTCCACACAAGGCAAGATC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp TTCTGTAGGTTGCGCACACCACTCTCCCTGCAGTATTaGTTGATGAGCAGTGTGAGCACTGCTGCTGACAGC +
Preference number: 3 (lower is better)
Translates to: FCRLRTPLSLQY*LMSSVSTAADS
Trigger: GCTGTCAGCAGCAGTGCTCACACTGCTCATCAAGCAATACTGCAGGGAGAGTGGTGTGCGCAACCTACAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp AATGAAAGACAGCACATGCTTCCTGTCCCACCACACTaGAGGCTGAGGCAGGAGGACTGCACAAGTACAAGG +
Preference number: 3 (lower is better)
Translates to: NERQHMLPVPPH*RLRQEDCTSTR
Trigger: CCTTGTACTTGTGCAGTCCTCCTGCCTCAGCCTCCAGTGTGGTGGGACAGGAAGCATGTGCTGTCTTTCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp AAGCAGAGGATCTTGCCTTGTGTGGAGCCTCTGAGCTaGCTGACTGCAATGAACTCCAGGACACGCTTCTTC +
Preference number: 3 (lower is better)
Translates to: KQRILPCVEPLS*LTAMNSRTRFF
Trigger: GAAGAAGCGTGTCCTGGAGTTCATTGCAGTCAGCCAGCTCAGAGGCTCCACACAAGGCAAGATCCTCTGCTT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp GCCAGACACATTGATCATCTCCATGCGGTCCCTCAGTaGTTCTGGGATGGTGTCAATGACATTGGCCGTGCA +
Preference number: 3 (lower is better)
Translates to: ARHIDHLHAVPQ*FWDGVNDIGRA
Trigger: TGCACGGCCAATGTCATTGACACCATCCCAGAACCACTGAGGGACCGCATGGAGATGATCAATGTGTCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CAA 90 bp AGATCTAAAGTGGTGCTAGGAACTGGAGGTCCTCACACATGCTACCTGAACCCCTCCTCCACCTCTTTCTaGCCTCGCTTCAGCTTCCTC +
Preference number: 3 (lower is better)
Translates to: RSKVVLGTGGPHTCYLNPSSTSF*PRFSFL
Trigger: GAGGAAGCTGAAGCGAGGCAAGAAAGAGGTGGAGGA...GGGGTTCAGGTAGCATGTGTGAGGACCTCCAGTTCCTAGCACCACTTTAGATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CAA 90 bp GACAGCAGTGCAGTGACAATAGTACAGCCTGCGCTGGGACCATCCTTGGGGGTATTCCTGTGTGTCTGCTaGATCTTCTCCTCTACCTGT +
Preference number: 3 (lower is better)
Translates to: DSSAVTIVQPALGPSLGVFLCVC*IFSSTC
Trigger: ACAGGTAGAGGAGAAGATCAAGCAGACACACAGGAA...TACCCCCAAGGATGGTCCCAGCGCAGGCTGTACTATTGTCACTGCACTGCTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CAA 90 bp CACAGAGCATCCTCAGGTCAGAATTTCAACTCAGTAGTGTTGTCTGAGCGGACTGACCAAGCCAGAGGCTaGGGAGACAGCAAGCAGAGG +
Preference number: 3 (lower is better)
Translates to: HRASSGQNFNSVVLSERTDQARG*GDSKQR
Trigger: CCTCTGCTTGCTGTCTCCCAAGCCTCTGGCTTGGTC...AGTCCGCTCAGACAACACTACTGAGTTGAAATTCTGACCTGAGGATGCTCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 72 bp CTCTTCCCTCCTGTCACCTCACGGCCTAGGCGTTGCTaGAGCTTGCTCAACTCAAACTCCTTCTTCAAGAGA +
Preference number: 3 (lower is better)
Translates to: LFPPVTSRPRRC*SLLNSNSFFKR
Trigger: TCTCTTGAAGAAGGAGTTTGAGTTGAGCAAGCTTCAGCAACGCCTAGGCCGTGAGGTGACAGGAGGGAAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp ATCTCTGCAGTCAGGGCCTTCACTTCCTCTGTGACCTaGAAGTCTTCATGGGCTACATTCTCAACCTCCACC +
Preference number: 3 (lower is better)
Translates to: ISAVRAFTSSVT*KSSWATFSTST
Trigger: GGTGGAGGTTGAGAATGTAGCCCATGAAGACTTCCAGGTCACAGAGGAAGTGAAGGCCCTGACTGCAGAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp GACAGCAGCAGTGCTCTGTCAGGGATCTTTGAGAAGTaGTCACTGAGGGAGGCCAGGTGCCATAGTAACAAA +
Preference number: 3 (lower is better)
Translates to: DSSSALSGIFEK*SLREARCHSNK
Trigger: TTTGTTACTATGGCACCTGGCCTCCCTCAGTGACCACTTCTCAAAGATCCCTGACAGAGCACTGCTGCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CAA 90 bp TGCCTGCATCATCTGCAGCACGGACTCTCTGTACAGAGGGTTCAAGGCGATGATACAATCATTCGCAACTaGTCTCCGAGGTCCTGCATC +
Preference number: 3 (lower is better)
Translates to: CLHHLQHGLSVQRVQGDDTIIRN*SPRSCI
Trigger: GATGCAGGACCTCGGAGACAAGTTGCGAATGATTGT...ATCATCGCCTTGAACCCTCTGTACAGAGAGTCCGTGCTGCAGATGATGCAGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CAA 90 bp AGCTCCCTGAGGCGTTCCCGGAACTTCTCCTCAATGGCATCTTTATCATCTTTCGATAGCCCTGAACTCTaGAGCCTCCTGGTCCATCTT +
Preference number: 3 (lower is better)
Translates to: SSLRRSRNFSSMASLSSFDSPEL*SLLVHL
Trigger: AAGATGGACCAGGAGGCTCAAGAGTTCAGGGCTATC...GAAAGATGATAAAGATGCCATTGAGGAGAAGTTCCGGGAACGCCTCAGGGAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 72 bp GCAGCACGGACTCTCTGTACAGAGGGTTCAAGGCGATaGTATCCCGAATGGTCTTCACAATCTCTGCAGTCA +
Preference number: 3 (lower is better)
Translates to: AARTLCTEGSRR*YPEWSSQSLQS
Trigger: TGACTGCAGAGATTGTGAAGACCATTCGGGATATCATCGCCTTGAACCCTCTGTACAGAGAGTCCGTGCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp TGTGTGTTCACAGACTACGTGGACTCACCACATACTTaGTTCCTGGGCTGCTGTAGACAAAGCCTGAGGATG +
Preference number: 3 (lower is better)
Translates to: CVFTDYVDSPHT*FLGCCRQSLRM
Trigger: CATCCTCAGGCTTTGTCTACAGCAGCCCAGGAAGCAAGTATGTGGTGAGTCCACGTAGTCTGTGAACACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp AGGCTGAGGCAGGAGGACTGCACAAGTACAAGGTTCTaGGTCATCCTGTTTCAAAGAGAGGACCCTGAAATG +
Preference number: 3 (lower is better)
Translates to: RLRQEDCTSTRF*VILFQREDPEM
Trigger: CATTTCAGGGTCCTCTCTTTGAAACAGGATGACCCAGAACCTTGTACTTGTGCAGTCCTCCTGCCTCAGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp CTTCTACCCTGTAGGCTCCCACAGGCCACCCTGACATaGAATTTGCAGCTTGTTTGGACTGCTGTTGTAATG +
Preference number: 3 (lower is better)
Translates to: LLPCRLPQATLT*NLQLVWTAVVM
Trigger: CATTACAACAGCAGTCCAAACAAGCTGCAAATTCCATGTCAGGGTGGCCTGTGGGAGCCTACAGGGTAGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp CACATTGATCATCTCCATGCGGTCCCTCAGTGGTTCTaGGATGGTGTCAATGACATTGGCCGTGCAGATGAA +
Preference number: 3 (lower is better)
Translates to: HIDHLHAVPQWF*DGVNDIGRADE
Trigger: TTCATCTGCACGGCCAATGTCATTGACACCATCCCAGAACCACTGAGGGACCGCATGGAGATGATCAATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR-3UTR CAA 90 bp AGGCACGAGCATAGGTGTAGGCTATGCGGGCACTCTCTTTCATCACATCTCCCAACGTCCGACTCATTGTaGTCATCTCTCTTTAGGAAG +
Preference number: 3 (lower is better)
Translates to: RHEHRCRLCGHSLSSHLPTSDSL*SSLFRK
Trigger: CTTCCTAAAGAGAGATGACAACAATGAGTCGGACGT...TGGGAGATGTGATGAAAGAGAGTGCCCGCATAGCCTACACCTATGCTCGTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 72 bp TCACAATCTCTGCAGTCAGGGCCTTCACTTCCTCTGTaGCCTGGAAGTCTTCATGGGCTACATTCTCAACCT +
Preference number: 3 (lower is better)
Translates to: SQSLQSGPSLPL*PGSLHGLHSQP
Trigger: AGGTTGAGAATGTAGCCCATGAAGACTTCCAGGTCACAGAGGAAGTGAAGGCCCTGACTGCAGAGATTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp TTTTTAACCTCAGAGTGGTGCGATGACAAGCAGGAGTaGGGTTCCAAAAGTTTCTTAGACGCGAGGGAGCTG +
Preference number: 3 (lower is better)
Translates to: FLTSEWCDDKQE*GSKSFLDAREL
Trigger: CAGCTCCCTCGCGTCTAAGAAACTTTTGGAACCGCACTCCTGCTTGTCATCGCACCACTCTGAGGTTAAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp CCACAGGCCACCCTGACATGGAATTTGCAGCTTGTTTaGACTGCTGTTGTAATGCCCAAACACACCCAATAC +
Preference number: 3 (lower is better)
Translates to: PQATLTWNLQLV*TAVVMPKHTQY
Trigger: GTATTGGGTGTGTTTGGGCATTACAACAGCAGTCCAAACAAGCTGCAAATTCCATGTCAGGGTGGCCTGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 72 bp AAGGTTCTGGGTCATCCTGTTTCAAAGAGAGGACCCTaGAATGAAAGTGTTAGAGCCGAGATGTACCCCCTT +
Preference number: 3 (lower is better)
Translates to: KVLGHPVSKRGP*NESVRAEMYPL
Trigger: AAGGGGGTACATCTCGGCTCTAACACTTTCATTTCAGGGTCCTCTCTTTGAAACAGGATGACCCAGAACCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp AGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTaGCTCCGCCACACCATGATTTATTTAGTCCCAGGC +
Preference number: 3 (lower is better)
Translates to: RFSLFMILQLCS*LRHTMIYLVPG
Trigger: GCCTGGGACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
3UTR CCA 72 bp AGGAGCTCAACCAACTTCTTATTTTTAACCTCAGAGTaGTGCGATGACAAGCAGGAGTGCGGTTCCAAAAGT +
Preference number: 3 (lower is better)
Translates to: RSSTNFLFLTSE*CDDKQECGSKS
Trigger: ACTTTTGGAACCGCACTCCTGCTTGTCATCGCACCACTCTGAGGTTAAAAATAAGAAGTTGGTTGAGCTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CCA 72 bp AATACACGAGAGTTAAACCTGTGTTCTGTTTGTCTTTaGTCTATGCCAGATCATGGTAGCCCAAGCTGGCCT +
Preference number: 3 (lower is better)
Translates to: NTRELNLCSVCL*SMPDHGSPSWP
Trigger: AGGCCAGCTTGGGCTACCATGATCTGGCATAGACCAAAGACAAACAGAACACAGGTTTAACTCTCGTGTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR GCA 72 bp AGCTCAACCAACTTCTTATTTTTAACCTCAGAGTGGTaGGATGACAAGCAGGAGTGCGGTTCCAAAAGTTTC +
Preference number: 3 (lower is better)
Translates to: SSTNFLFLTSEW*DDKQECGSKSF
Trigger: GAAACTTTTGGAACCGCACTCCTGCTTGTCATCGCACCACTCTGAGGTTAAAAATAAGAAGTTGGTTGAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR TCA 72 bp AACCAACTTCTTATTTTTAACCTCAGAGTGGTGCGATaGCAAGCAGGAGTGCGGTTCCAAAAGTTTCTTAGA +
Preference number: 3 (lower is better)
Translates to: NQLLIFNLRVVR*QAGVRFQKFLR
Trigger: TCTAAGAAACTTTTGGAACCGCACTCCTGCTTGTCATCGCACCACTCTGAGGTTAAAAATAAGAAGTTGGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 72 bp CCAAGGGCACGGGCAATGGAGCGTGCAATGCTGGTCTaGCCCACCCCCGGTGGGCCGTGGAAGCAGAGGATC +
Preference number: 4 (lower is better)
Translates to: PRARAMERAMLV*PTPGGPWKQRI
Trigger: GATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAAGACCAGCATTGCACGCTCCATTGCCCGTGCCCTTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 72 bp TTGCCCACCCCCGGTGGGCCGTGGAAGCAGAGGATCTaGCCTTGTGTGGAGCCTCTGAGCTGGCTGACTGCA +
Preference number: 4 (lower is better)
Translates to: LPTPGGPWKQRI*PCVEPLSWLTA
Trigger: TGCAGTCAGCCAGCTCAGAGGCTCCACACAAGGCAAGATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 72 bp TCAGTGGCAGCCTCGGTCACCATCTCCAGCTGGGGCTaGGGGCCCAGCTCATCCTCCACCTCTTTCTTGCCT +
Preference number: 4 (lower is better)
Translates to: SVAASVTISSWG*GPSSSSTSFLP
Trigger: AGGCAAGAAAGAGGTGGAGGATGAGCTGGGCCCCAAGCCCCAGCTGGAGATGGTGACCGAGGCTGCCACTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 72 bp CAGCAGCCTGCACAGGAACACGACCAAGCCAGAGGCTaGGGAGACAGCAAGCAGAGGTGGCTATGGGCCATG +
Preference number: 4 (lower is better)
Translates to: QQPAQEHDQARG*GDSKQRWLWAM
Trigger: CATGGCCCATAGCCACCTCTGCTTGCTGTCTCCCAAGCCTCTGGCTTGGTCGTGTTCCTGTGCAGGCTGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 72 bp CACCCCCGGTGGGCCGTGGAAGCAGAGGATCTTGCCTaGTGTGGAGCCTCTGAGCTGGCTGACTGCAATGAA +
Preference number: 4 (lower is better)
Translates to: HPRWAVEAEDLA*CGASELADCNE
Trigger: TTCATTGCAGTCAGCCAGCTCAGAGGCTCCACACAAGGCAAGATCCTCTGCTTCCACGGCCCACCGGGGGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
CDS-3UTR TCA 90 bp GAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCTGGGCGCGAGCGCTGTaGCGACCGGGCCTTCCCCGG +
Preference number: 4 (lower is better)
Translates to: ERFSLFMILQLCSWLRHTWARAL*RPGLPR
Trigger: CCGGGGAAGGCCCGGTCGTCACAGCGCTCGCGCCCA...GGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
3UTR CAA 72 bp GCAGTGACAATAGTACAGCCTGCGCTGGGACCATCCTaGGGGGTAGCACCCTCAGGCACATGCAGGTGGATG +
Preference number: 4 (lower is better)
Translates to: AVTIVQPALGPS*GVAPSGTCRWM
Trigger: CATCCACCTGCATGTGCCTGAGGGTGCTACCCCCAAGGATGGTCCCAGCGCAGGCTGTACTATTGTCACTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
CDS-3UTR TCA 90 bp ATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTTGGGCGCGAGCGCTGTaGCGACCGGGCCTTCCCCGG +
Preference number: 4 (lower is better)
Translates to: IHDSTAVLVAPPHHDLFSWARAL*RPGLPR
Trigger: CCGGGGAAGGCCCGGTCGTCACAGCGCTCGCGCCCA...ACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
3UTR CAA 72 bp GAGCCGCTTAAGGATGTTGGTCTCTTCCAGAACATCTaGCAGCTCATGGGACTCCGCCCCAGTGAGTGCCGC +
Preference number: 4 (lower is better)
Translates to: EPLKDVGLFQNI*QLMGLRPSECR
Trigger: GCGGCACTCACTGGGGCGGAGTCCCATGAGCTGCAAGATGTTCTGGAAGAGACCAACATCCTTAAGCGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 72 bp TTGCTCAGCTCCTCATCCACCACGTCCATCACATGCTaGGGAACCACAAGCTCCCTGAGGCGTTCCCGGAAC +
Preference number: 4 (lower is better)
Translates to: LLSSSSTTSITC*GTTSSLRRSRN
Trigger: GTTCCGGGAACGCCTCAGGGAGCTTGTGGTTCCCAAGCATGTGATGGACGTGGTGGATGAGGAGCTGAGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 72 bp ATGGTCTTCTCCTTGATGCCACCCACAGGCAACACCTaGCCAGTGAGGGAGACCTCCCCAGTCATAGCCAGG +
Preference number: 4 (lower is better)
Translates to: MVFSLMPPTGNT*PVRETSPVIAR
Trigger: CCTGGCTATGACTGGGGAGGTCTCCCTCACTGGCAAGGTGTTGCCTGTGGGTGGCATCAAGGAGAAGACCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 72 bp GTCACACCTGCACGCTTAGCCGCAATGGTCTTCTCCTaGATGCCACCCACAGGCAACACCTTGCCAGTGAGG +
Preference number: 4 (lower is better)
Translates to: VTPARLAAMVFS*MPPTGNTLPVR
Trigger: CCTCACTGGCAAGGTGTTGCCTGTGGGTGGCATCAAGGAGAAGACCATTGCGGCTAAGCGTGCAGGTGTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
CDS-3UTR CCA 90 bp TTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTCCACAGCCCCCGCCACTaGACCCCGCCGGGAAGAACG +
Preference number: 4 (lower is better)
Translates to: FMILQLCSWLRHTMIYLVHSPRH*TPPGRT
Trigger: CGTTCTTCCCGGCGGGGTCCAGTGGCGGGGGCTGTG...GACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
3UTR CAA 72 bp TGGGCTACATTCTCAACCTCCACCATGAGCACCTCCTaGGATGTGTCAGTGGCAGCCTCGGTCACCATCTCC +
Preference number: 4 (lower is better)
Translates to: WATFSTSTMSTS*DVSVAASVTIS
Trigger: GGAGATGGTGACCGAGGCTGCCACTGACACATCCAAGGAGGTGCTCATGGTGGAGGTTGAGAATGTAGCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
CDS-3UTR GCA 90 bp GAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCCTAGGCCACACAGGGTaGGGGCCTGTGGCACCAGGT +
Preference number: 4 (lower is better)
Translates to: ERFSLFMILQLCSWLRHTLGHTG*GPVAPG
Trigger: ACCTGGTGCCACAGGCCCGCACCCTGTGTGGCCTAG...GGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
3UTR CAA 72 bp TGTAGGTTGCGCACACCACTCTCCCTGCAGTATTGCTaGATGAGCAGTGTGAGCACTGCTGCTGACAGCTGG +
Preference number: 4 (lower is better)
Translates to: CRLRTPLSLQYC*MSSVSTAADSW
Trigger: CCAGCTGTCAGCAGCAGTGCTCACACTGCTCATCAAGCAATACTGCAGGGAGAGTGGTGTGCGCAACCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
CDS-3UTR TCA 90 bp CATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTCCCCCTCCAGCTGCCGGCTaGTGTGAATCCTTCTGTGGC +
Preference number: 4 (lower is better)
Translates to: HDSTAVLVAPPHHDLFSPPPAAG*CESFCG
Trigger: GCCACAGAAGGATTCACATCAGCCGGCAGCTGGAGG...GGGACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp GTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATGTGCAATGCTGGTCTTaGCCACCCCCGGTGGGCCGT +
Preference number: 4 (lower is better)
Translates to: VFFIHDSTAVLVAPPHHDVQCWS*PPPVGR
Trigger: ACGGCCCACCGGGGGTGGGCAAGACCAGCATTGCAC...ATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp TTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTACACAGCCCCCGCCACTaGACCCCGCCGGGAAGAACG +
Preference number: 4 (lower is better)
Translates to: LFMILQLCSWLRHTMIYLHSPRH*TPPGRT
Trigger: CGTTCTTCCCGGCGGGGTCCAGTGGCGGGGGCTGTG...TAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS-3UTR CCA 90 bp GGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACGTCACCATCTCCAGCTaGGGCTTGGGGCCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: GKVFFIHDSTAVLVAPPHVTISS*GLGPSS
Trigger: TGAGCTGGGCCCCAAGCCCCAGCTGGAGATGGTGAC...GTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
3UTR CAA 72 bp ATGGCTGTGCGGACTCACTTGAACTCAGAGGAGTGGTaGTCCAGTAGAGCAAGCTTGCTCAGCTCCTCATCC +
Preference number: 4 (lower is better)
Translates to: MAVRTHLNSEEW*SSRASLLSSSS
Trigger: GGATGAGGAGCTGAGCAAGCTTGCTCTACTGGACAACCACTCCTCTGAGTTCAAGTGAGTCCGCACAGCCAT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 72 bp AACTTAGGGTCCCAGTACCAGATAGCGTGGAGTATCTaGGCCAGAGCTACCACAGGGTCCCTGAGCAGGAAA +
Preference number: 4 (lower is better)
Translates to: NLGSQYQIAWSI*ARATTGSLSRK
Trigger: TTTCCTGCTCAGGGACCCTGTGGTAGCTCTGGCCAAGATACTCCACGCTATCTGGTACTGGGACCCTAAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
CDS-3UTR TCA 90 bp AAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGCGATGAGCGGCAGGTaGGGAAACACATCCGGGACG +
Preference number: 4 (lower is better)
Translates to: KVFFIHDSTAVLVAPPHHAMSGR*GNTSGT
Trigger: CGTCCCGGATGTGTTTCCTCACCTGCCGCTCATCGC...ATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS-3UTR GCA 90 bp TTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGCCAGTGCCTCCCTGTaGTCTCGCCGGGGGAAGGCA +
Preference number: 4 (lower is better)
Translates to: LFMILQLCSWLRHTMIYLASASL*SRRGKA
Trigger: TGCCTTCCCCCGGCGAGAGCACAGGGAGGCACTGGC...TAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp TTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTCTCTCCAGCTGGGGCTTaGGGCCCAGCTCATCCTCCA +
Preference number: 4 (lower is better)
Translates to: FMILQLCSWLRHTMIYLVSPAGA*GPAHPP
Trigger: TGGAGGATGAGCTGGGCCCCAAGCCCCAGCTGGAGA...GACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp AAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATTCCTCCAGCACAGCCTaGGCCCGAGCCAAGTCCAAG +
Preference number: 4 (lower is better)
Translates to: KVFFIHDSTAVLVAPPHHSSSTA*ARAKSK
Trigger: CTTGGACTTGGCTCGGGCCCAGGCTGTGCTGGAGGA...ATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp TTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTACTTGCCCACCCCCGGTaGGCCGTGGAAGCAGAGGAT +
Preference number: 4 (lower is better)
Translates to: FFIHDSTAVLVAPPHHDLLAHPR*AVEAED
Trigger: ATCCTCTGCTTCCACGGCCCACCGGGGGTGGGCAAG...TAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp AGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGTTCTGCAACACTGGCTaGCCCAGAGCCAGGGACAGC +
Preference number: 4 (lower is better)
Translates to: RFSLFMILQLCSWLRHTMFCNTG*PRARDS
Trigger: GCTGTCCCTGGCTCTGGGCCAGCCAGTGTTGCAGAA...CATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
3UTR CAA 72 bp CCCTGTAGGCTCCCACAGGCCACCCTGACATGGAATTaGCAGCTTGTTTGGACTGCTGTTGTAATGCCCAAA +
Preference number: 4 (lower is better)
Translates to: PCRLPQATLTWN*QLVWTAVVMPK
Trigger: TTTGGGCATTACAACAGCAGTCCAAACAAGCTGCAAATTCCATGTCAGGGTGGCCTGTGGGAGCCTACAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
3UTR CAA 72 bp TTGAACTCAGAGGAGTGGTTGTCCAGTAGAGCAAGCTaGCTCAGCTCCTCATCCACCACGTCCATCACATGC +
Preference number: 4 (lower is better)
Translates to: LNSEEWLSSRAS*LSSSSTTSITC
Trigger: GCATGTGATGGACGTGGTGGATGAGGAGCTGAGCAAGCTTGCTCTACTGGACAACCACTCCTCTGAGTTCAA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
CDS-3UTR TCA 90 bp TTTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCAGCGATGAGCGGCAGGTaGGGAAACACATCCGGGACG +
Preference number: 4 (lower is better)
Translates to: FGKVFFIHDSTAVLVAPPAMSGR*GNTSGT
Trigger: CGTCCCGGATGTGTTTCCTCACCTGCCGCTCATCGC...TGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS-3UTR TCA 90 bp AAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATCCACGCCAGGAGGTGTaGCTTCGTACATGCGCTCCA +
Preference number: 4 (lower is better)
Translates to: KVFFIHDSTAVLVAPPHHPRQEV*LRTCAP
Trigger: TGGAGCGCATGTACGAAGTCACACCTCCTGGCGTGG...ATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp ATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTGCCGGCCCCATGGGATaGATGTCAGCCAGTCCAGGT +
Preference number: 4 (lower is better)
Translates to: IHDSTAVLVAPPHHDLFSAGPMG*MSASPG
Trigger: ACCTGGACTGGCTGACATCCATCCCATGGGGCCGGC...ACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp TCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATACCCCCGGTGGGCCGTaGAAGCAGAGGATCTTGCCT +
Preference number: 4 (lower is better)
Translates to: SLFMILQLCSWLRHTMIYTPGGP*KQRILP
Trigger: AGGCAAGATCCTCTGCTTCCACGGCCCACCGGGGGT...ATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp AGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGCAAGGGCACGGGCAATaGAGCGTGCAATGCTGGTCT +
Preference number: 4 (lower is better)
Translates to: RFSLFMILQLCSWLRHTMQGHGQ*SVQCWS
Trigger: AGACCAGCATTGCACGCTCCATTGCCCGTGCCCTTG...CATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR TCA 90 bp TTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTCGAACCACAAGCTCCCTaGGGCGTTCCCGGAACTTCT +
Preference number: 4 (lower is better)
Translates to: FMILQLCSWLRHTMIYLVEPQAP*GVPGTS
Trigger: AGAAGTTCCGGGAACGCCTCAGGGAGCTTGTGGTTC...GACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp AAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATCCTGCTTCTGTAGGTTaGGCACACCACTCTCCCTGC +
Preference number: 4 (lower is better)
Translates to: KVFFIHDSTAVLVAPPHHPASVG*AHHSPC
Trigger: GCAGGGAGAGTGGTGTGCGCAACCTACAGAAGCAGG...ATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp AGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGGTCATAGCCAGGTTCTaGAACACTGGCTGGCCCAGA +
Preference number: 4 (lower is better)
Translates to: RFSLFMILQLCSWLRHTMVIARF*NTGWPR
Trigger: TCTGGGCCAGCCAGTGTTGCAGAACCTGGCTATGAC...CATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp TTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTTGGCTCAAGCCCCTCTaGTTCCACCTCCAGCTGCCG +
Preference number: 4 (lower is better)
Translates to: FIHDSTAVLVAPPHHDLFWLKPL*FHLQLP
Trigger: CGGCAGCTGGAGGTGGAACCAGAGGGGCTTGAGCCA...AAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp CATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTCCCTGTCGCTCAAGTAGATaGGGTTGTCCACCACACGCT +
Preference number: 4 (lower is better)
Translates to: HDSTAVLVAPPHHDLFSPCRSSR*GCPPHA
Trigger: AGCGTGTGGTGGACAACCCCATCTACTTGAGCGACA...GGGACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp CATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTCCCCATGCGGTCCCTCAGTaGTTCTGGGATGGTGTCAAT +
Preference number: 4 (lower is better)
Translates to: HDSTAVLVAPPHHDLFSPHAVPQ*FWDGVN
Trigger: ATTGACACCATCCCAGAACCACTGAGGGACCGCATG...GGGACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp AGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGACTGCTGCTGACAGCTaGGCCTTGCTCTCATCTAGG +
Preference number: 4 (lower is better)
Translates to: RFSLFMILQLCSWLRHTMTAADS*ALLSSR
Trigger: CCTAGATGAGAGCAAGGCCCAGCTGTCAGCAGCAGT...CATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
3UTR CAA 72 bp TCCACCTCATCAATGAGCACTAGCGGGTTCTCTGTCTaGGTCTTCTTCAGACACTGGATGATCTTCCCAGGC +
Preference number: 4 (lower is better)
Translates to: STSSMSTSGFSV*VFFRHWMIFPG
Trigger: GCCTGGGAAGATCATCCAGTGTCTGAAGAAGACCAAGACAGAGAACCCGCTAGTGCTCATTGATGAGGTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
CDS-3UTR TCA 90 bp TTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACCGGCCTAGGCGTTGCTaGAGCTTGCTCAACTCAAAC +
Preference number: 4 (lower is better)
Translates to: LERFSLFMILQLCSWLRHRPRRC*SLLNSN
Trigger: GTTTGAGTTGAGCAAGCTTCAGCAACGCCTAGGCCG...GTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR TCA 90 bp TTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTCATCACATCTCCCAGCTaGCCTGTCACCTCTAGGCTG +
Preference number: 4 (lower is better)
Translates to: FMILQLCSWLRHTMIYLVITSPS*PVTSRL
Trigger: CAGCCTAGAGGTGACAGGTCAGCTGGGAGATGTGAT...GACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp AAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATCCTGCCTGCATCATCTaGAGCACGGACTCTCTGTAC +
Preference number: 4 (lower is better)
Translates to: KVFFIHDSTAVLVAPPHHPACII*STDSLY
Trigger: GTACAGAGAGTCCGTGCTGCAGATGATGCAGGCAGG...ATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp ATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTACGGGCAATGGAGCGTaGAATGCTGGTCTTGCCCAC +
Preference number: 4 (lower is better)
Translates to: IHDSTAVLVAPPHHDLFSTGNGA*NAGLAH
Trigger: GTGGGCAAGACCAGCATTGCACGCTCCATTGCCCGT...ACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp GGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACAGCACCTTCTCCACCTaGTTCTGTAGGTTGCGCACA +
Preference number: 4 (lower is better)
Translates to: GKVFFIHDSTAVLVAPPHSTFST*FCRLRT
Trigger: TGTGCGCAACCTACAGAAGCAGGTGGAGAAGGTGCT...GTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp TTTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCAGCACCCTCAGGCACATaGAGGTGGATGTGTGAGGTG +
Preference number: 4 (lower is better)
Translates to: FGKVFFIHDSTAVLVAPPAPSGT*RWMCEV
Trigger: CACCTCACACATCCACCTGCATGTGCCTGAGGGTGC...TGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR TCA 90 bp AGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGGAGGGTTCAAGGCGATaGTATCCCGAATGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: RFSLFMILQLCSWLRHTMEGSRR*YPEWSS
Trigger: TGAAGACCATTCGGGATATCATCGCCTTGAACCCTC...CATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR TCA 90 bp TTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTCCAATGGTCTTCTCCTTaGTGCCACCCACAGGCAACA +
Preference number: 4 (lower is better)
Translates to: FMILQLCSWLRHTMIYLVQWSSP*CHPQAT
Trigger: TGTTGCCTGTGGGTGGCATCAAGGAGAAGACCATTG...GACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp TTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACGTGCCCCTTGATTTCTaGCACATCTGTCATGCCACC +
Preference number: 4 (lower is better)
Translates to: LERFSLFMILQLCSWLRHVPLDF*HICHAT
Trigger: GGTGGCATGACAGATGTGGCAGAAATCAAGGGGCAC...GTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp AAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATAGGAAGTTGGCATTCTaGTCAGGGTCCAGCAACTCC +
Preference number: 4 (lower is better)
Translates to: KVFFIHDSTAVLVAPPHHRKLAF*SGSSNS
Trigger: GGAGTTGCTGGACCCTGAGCAGAATGCCAACTTCCT...ATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp GTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTCTTGTATGCAGCCTTaGGCAGCACCTTCTCCACCT +
Preference number: 4 (lower is better)
Translates to: VFFIHDSTAVLVAPPHHDSCMQP*AAPSPP
Trigger: AGGTGGAGAAGGTGCTGCGCAAGGCTGCATACAAGA...ATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp TTTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACTGTCACCTCTAGGCTaGCATCCTTGTCCTCCTTGC +
Preference number: 4 (lower is better)
Translates to: FGKVFFIHDSTAVLVAPPLSPLG*HPCPPC
Trigger: GCAAGGAGGACAAGGATGGCAGCCTAGAGGTGACAG...TGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp AGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGTCATTTTCAGGGTCCTaGTCCATCAGGAAGGCACGA +
Preference number: 4 (lower is better)
Translates to: RFSLFMILQLCSWLRHTMSFSGS*SIRKAR
Trigger: TCGTGCCTTCCTGATGGAGCAGGACCCTGAAAATGA...CATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp TTTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCAGTGGAGCCTCTGAGCTaGCTGACTGCAATGAACTCC +
Preference number: 4 (lower is better)
Translates to: FGKVFFIHDSTAVLVAPPVEPLS*LTAMNS
Trigger: GGAGTTCATTGCAGTCAGCCAGCTCAGAGGCTCCAC...TGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp GGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACGCGGGTTCTCTGTCTTaGTCTTCTTCAGACACTGGA +
Preference number: 4 (lower is better)
Translates to: GKVFFIHDSTAVLVAPPHAGSLS*SSSDTG
Trigger: TCCAGTGTCTGAAGAAGACCAAGACAGAGAACCCGC...GTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp AAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATTCAGGCACATGCAGGTaGATGTGTGAGGTGACTAGG +
Preference number: 4 (lower is better)
Translates to: KVFFIHDSTAVLVAPPHHSGTCR*MCEVTR
Trigger: CCTAGTCACCTCACACATCCACCTGCATGTGCCTGA...ATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR TCA 90 bp TTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTACCTTCACTTCCTCTGTaGCCTGGAAGTCTTCATGGG +
Preference number: 4 (lower is better)
Translates to: FFIHDSTAVLVAPPHHDLPSLPL*PGSLHG
Trigger: CCCATGAAGACTTCCAGGTCACAGAGGAAGTGAAGG...TAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR TCA 90 bp TTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATACGCCTGTGCCCCTTaGTTTCTGCCACATCTGTCA +
Preference number: 4 (lower is better)
Translates to: FFIHDSTAVLVAPPHHDLYACAP*FLPHLS
Trigger: TGACAGATGTGGCAGAAATCAAGGGGCACAGGCGTA...TAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR TCA 90 bp TTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTACATGCGCTCCACTGTaGACACAGGCTTCCCAACAA +
Preference number: 4 (lower is better)
Translates to: FSLFMILQLCSWLRHTMITCAPL*TQASQQ
Trigger: TTGTTGGGAAGCCTGTGTTCACAGTGGAGCGCATGT...AATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp TTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTAGGACTTTTGTTTCTCTaGCTCTGGCTCAAGCCCCTC +
Preference number: 4 (lower is better)
Translates to: FFIHDSTAVLVAPPHHDLGLLFL*LWLKPL
Trigger: GAGGGGCTTGAGCCAGAGGCAGAGAAACAAAAGTCC...TAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp AAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGGTCTTCACAATCTCTaGAGTCAGGGCCTTCACTTC +
Preference number: 4 (lower is better)
Translates to: KVFFIHDSTAVLVAPPHHGLHNL*SQGLHF
Trigger: GAAGTGAAGGCCCTGACTGCAGAGATTGTGAAGACC...ATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp TTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATCTTCCAGAACATCTTaGAGCTCATGGGACTCCGCC +
Preference number: 4 (lower is better)
Translates to: FFIHDSTAVLVAPPHHDLSSRTS*SSWDSA
Trigger: GGCGGAGTCCCATGAGCTGCAAGATGTTCTGGAAGA...TAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp GGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACATCTTCAACTGCTCCTaGAGCAGGTACTTCCTGTGT +
Preference number: 4 (lower is better)
Translates to: GKVFFIHDSTAVLVAPPHIFNCS*SRYFLC
Trigger: ACACAGGAAGTACCTGCTGCAGGAGCAGTTGAAGAT...GTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp ATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTTCTGAGCTGGCTGACTaGAATGAACTCCAGGACACG +
Preference number: 4 (lower is better)
Translates to: IHDSTAVLVAPPHHDLFSSELAD*NELQDT
Trigger: CGTGTCCTGGAGTTCATTGCAGTCAGCCAGCTCAGA...ACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp GGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACACTTACGATCTTGTATaGAGCCTTGCGCAGCACCTT +
Preference number: 4 (lower is better)
Translates to: GKVFFIHDSTAVLVAPPHTYDLV*SLAQHL
Trigger: AAGGTGCTGCGCAAGGCTGCATACAAGATCGTAAGT...GTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp GAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCCATAGGTGTAGGCTATaGGGGCACTCTCTTTCATCA +
Preference number: 4 (lower is better)
Translates to: ERFSLFMILQLCSWLRHTHRCRL*GHSLSS
Trigger: TGATGAAAGAGAGTGCCCGCATAGCCTACACCTATG...GGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp TTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTGACAATAGTACAGCCTaGGCTGGGACCATCCTTGGG +
Preference number: 4 (lower is better)
Translates to: FIHDSTAVLVAPPHHDLFDNSTA*AGTILG
Trigger: CCCAAGGATGGTCCCAGCGCAGGCTGTACTATTGTC...AAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp TTTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCAAGCCAGGGACAGCAGTaGAGTGACAATAGTACAGCC +
Preference number: 4 (lower is better)
Translates to: FGKVFFIHDSTAVLVAPPSQGQQ*SDNSTA
Trigger: GGCTGTACTATTGTCACTGCACTGCTGTCCCTGGCT...TGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp TTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTGTTTCTCTGCCTCTaGCTCAAGCCCCTCTGGTTC +
Preference number: 4 (lower is better)
Translates to: FFIHDSTAVLVAPPHHDLLFLCL*LKPLWF
Trigger: GAACCAGAGGGGCTTGAGCCAGAGGCAGAGAAACAA...TAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp TTTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCAAGTGGTCCAGGAAGTTaGCATTCTGCTCAGGGTCCA +
Preference number: 4 (lower is better)
Translates to: FGKVFFIHDSTAVLVAPPSGPGS*HSAQGP
Trigger: TGGACCCTGAGCAGAATGCCAACTTCCTGGACCACT...TGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp TTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTGCCGGGGGAAGGCAATaGGGAATATGTCCCGATAGT +
Preference number: 4 (lower is better)
Translates to: FIHDSTAVLVAPPHHDLFAGGRQ*GICPDS
Trigger: ACTATCGGGACATATTCCCCATTGCCTTCCCCCGGC...AAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR TCA 90 bp TCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTCCTGTGTGTCTGCTTaGTCTTCTCCTCTACCTCAC +
Preference number: 4 (lower is better)
Translates to: SLFMILQLCSWLRHTMIYSCVSA*SSPLPH
Trigger: GTGAGGTAGAGGAGAAGATCAAGCAGACACACAGGA...ATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR TCA 90 bp TCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATCATTGGCCGTGCAGATaGATAGCACCTTGGACAGAT +
Preference number: 4 (lower is better)
Translates to: SLFMILQLCSWLRHTMIYHWPCR*IAPWTD
Trigger: ATCTGTCCAAGGTGCTATTCATCTGCACGGCCAATG...ATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp GGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACTACTTCCTGTGTGTCTaGTTGATCTTCTCCTCTACC +
Preference number: 4 (lower is better)
Translates to: GKVFFIHDSTAVLVAPPHYFLCV*LIFSST
Trigger: GGTAGAGGAGAAGATCAAGCAGACACACAGGAAGTA...GTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR GCA 90 bp GAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCTTGATGATCTTCAACTaGTCCTGCAGCAGGTACTTC +
Preference number: 4 (lower is better)
Translates to: ERFSLFMILQLCSWLRHTLMIFN*SCSRYF
Trigger: GAAGTACCTGCTGCAGGAGCAGTTGAAGATCATCAA...GGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp AAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATACCTGGAAGTCTTCATaGGCTACATTCTCAACCTCC +
Preference number: 4 (lower is better)
Translates to: KVFFIHDSTAVLVAPPHHTWKSS*ATFSTS
Trigger: GGAGGTTGAGAATGTAGCCCATGAAGACTTCCAGGT...ATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp GTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATACTTCCTCTGTGACCTaGAAGTCTTCATGGGCTACA +
Preference number: 4 (lower is better)
Translates to: VFFIHDSTAVLVAPPHHDTSSVT*KSSWAT
Trigger: TGTAGCCCATGAAGACTTCCAGGTCACAGAGGAAGT...ATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp TTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTACTTGGACAGATCCACTaGCACATCCAGGTAGTGGTC +
Preference number: 4 (lower is better)
Translates to: LFMILQLCSWLRHTMIYLLGQIH*HIQVVV
Trigger: GACCACTACCTGGATGTGCCAGTGGATCTGTCCAAG...TAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR TCA 90 bp TTTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCATCCTTCTGTGGCCAGTaGCAATCATTCGCAACTTGT +
Preference number: 4 (lower is better)
Translates to: FGKVFFIHDSTAVLVAPPSFCGQ*QSFATC
Trigger: ACAAGTTGCGAATGATTGTCACTGGCCACAGAAGGA...TGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR TCA 90 bp ATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTGGTGGATGTGTGAGGTaGCTAGGAAGTCATTTTCAG +
Preference number: 4 (lower is better)
Translates to: IHDSTAVLVAPPHHDLFSGGCVR*LGSHFQ
Trigger: CTGAAAATGACTTCCTAGTCACCTCACACATCCACC...ACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp ATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTGCTTCAGCTTCCTCCTaGACTTTTGTTTCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: IHDSTAVLVAPPHHDLFSASASS*TFVSLP
Trigger: AGGCAGAGAAACAAAAGTCCAGGAGGAAGCTGAAGC...ACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp ATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTGTCTTCTTCAGACACTaGATGATCTTCCCAGGCATG +
Preference number: 4 (lower is better)
Translates to: IHDSTAVLVAPPHHDLFSVFFRH*MIFPGM
Trigger: CATGCCTGGGAAGATCATCCAGTGTCTGAAGAAGAC...ACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CCA 90 bp TTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACGGAACTTCTCCTCAATaGCATCTTTATCATCTTTCT +
Preference number: 4 (lower is better)
Translates to: LERFSLFMILQLCSWLRHGTSPQ*HLYHLS
Trigger: AGAAAGATGATAAAGATGCCATTGAGGAGAAGTTCC...GTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS TCA 90 bp CTCGGCGCAGCCACGACCCGGACGCGCTCGGGACCCGGCCTCCGGTaGCAGCCAGCAGCGGCCGCCGCAGAACCCAGCACCGCGCAGCGG +
Preference number: 5 (lower is better)
Translates to: LGAATTRTRSGPGLR*QPAAAAAEPSTAQR
Trigger: CCGCTGCGCGGTGCTGGGTTCTGCGGCGGCCGCTGCTGGCTGTCACCGGAGGCCGGGTCCCGAGCGCGTCCGGGTCGTGGCTGCGCCGAG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS GCA 90 bp TCGCCGTGGCCCCGTCCTCCGCACCGCCCTCGGAGGTCTCGTCGCTaGCACCGCGGTTGCCCGAGTCCCACAGCCCCCGCCACTGGACCC +
Preference number: 5 (lower is better)
Translates to: SPWPRPPHRPRRSRR*HRGCPSPTAPATGP
Trigger: GGGTCCAGTGGCGGGGGCTGTGGGACTCGGGCAACCGCGGTGGCAGCGACGAGACCTCCGAGGGCGGTGCGGAGGACGGGGCCACGGCGA
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS TCA 90 bp CCGCCACTGGACCCCGCCGGGAAGAACGCGGCCGCCCCAGGGAGCTaGCATGTCGCAGGCCCGACATCCTCGGCGCAGCCACGACCCGGA +
Preference number: 5 (lower is better)
Translates to: PPLDPAGKNAAAPGS*HVAGPTSSAQPRPG
Trigger: TCCGGGTCGTGGCTGCGCCGAGGATGTCGGGCCTGCGACATGTCAGCTCCCTGGGGCGGCCGCGTTCTTCCCGGCGGGGTCCAGTGGCGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS GCA 90 bp CGTCCTCCGCACCGCCCTCGGAGGTCTCGTCGCTGCCACCGCGGTTaGCCGAGTCCCACAGCCCCCGCCACTGGACCCCGCCGGGAAGAA +
Preference number: 5 (lower is better)
Translates to: RPPHRPRRSRRCHRG*PSPTAPATGPRREE
Trigger: TTCTTCCCGGCGGGGTCCAGTGGCGGGGGCTGTGGGACTCGGGCAACCGCGGTGGCAGCGACGAGACCTCCGAGGGCGGTGCGGAGGACG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS TCA 90 bp GCAGGTGAGGAAACACATCCGGGACGGTCATGGGCGCGAGCGCTGTaGCGACCGGGCCTTCCCCGGTGCTCGCCGTGGCCCCGTCCTCCG +
Preference number: 5 (lower is better)
Translates to: AGEETHPGRSWARAL*RPGLPRCSPWPRPP
Trigger: CGGAGGACGGGGCCACGGCGAGCACCGGGGAAGGCCCGGTCGTCACAGCGCTCGCGCCCATGACCGTCCCGGATGTGTTTCCTCACCTGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS TCA 90 bp AAGCGCGGGAACACAGGGTTGCGGGTGATGGCGATGAGCGGCAGGTaGGGAAACACATCCGGGACGGTCATGGGCGCGAGCGCTGTGACG +
Preference number: 5 (lower is better)
Translates to: KRGNTGLRVMAMSGR*GNTSGTVMGASAVT
Trigger: CGTCACAGCGCTCGCGCCCATGACCGTCCCGGATGTGTTTCCTCACCTGCCGCTCATCGCCATCACCCGCAACCCTGTGTTCCCGCGCTT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS-3UTR CAA 90 bp GGTCCAGCAACTCCAGCAGTGCTGATGACGGGTCCCCTTGGTAGCCTCGGCCAACGCGGGAACACAGGGTaGCGGGTGATGGCGATGAGC +
Preference number: 5 (lower is better)
Translates to: GPATPAVLMTGPLGSLGQRGNTG*RVMAMS
Trigger: GCTCATCGCCATCACCCGCAACCCTGTGTTCCCGCG...TTGGCCGAGGCTACCAAGGGGACCCGTCATCAGCACTGCTGGAGTTGCTGGACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
CDS-3UTR CAA 90 bp TGCCTGCATCATCTGCAGCACGGACTCTCTGTACAGAGGGTTCAAGGCGATGATTCGCTGCCACCGCGGTaGCCCGAGTCCCACAGCCCC +
Preference number: 5 (lower is better)
Translates to: CLHHLQHGLSVQRVQGDDSLPPR*PESHSP
Trigger: GGGGCTGTGGGACTCGGGCAACCGCGGTGGCAGCGA...ATCATCGCCTTGAACCCTCTGTACAGAGAGTCCGTGCTGCAGATGATGCAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
CDS-3UTR CAA 90 bp TTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACTCGCTGCCACCGCGGTaGCCCGAGTCCCACAGCCCC +
Preference number: 5 (lower is better)
Translates to: LERFSLFMILQLCSWLRHSLPPR*PESHSP
Trigger: GGGGCTGTGGGACTCGGGCAACCGCGGTGGCAGCGA...GTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS-3UTR CAA 90 bp GGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCGTGCAATGCTGGTCTaGCCCACCCCCGGTGGGCCG +
Preference number: 5 (lower is better)
Translates to: GKVFFIHDSTAVLVAPPHRAMLV*PTPGGP
Trigger: CGGCCCACCGGGGGTGGGCAAGACCAGCATTGCACG...GTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp AAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATATCTCCAGCTGGGGCTaGGGGCCCAGCTCATCCTCC +
Preference number: 5 (lower is better)
Translates to: KVFFIHDSTAVLVAPPHHISSWG*GPSSSS
Trigger: GGAGGATGAGCTGGGCCCCAAGCCCCAGCTGGAGAT...ATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp CATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTCCCGCAGAGGATCTTGCCTaGTGTGGAGCCTCTGAGCTG +
Preference number: 5 (lower is better)
Translates to: HDSTAVLVAPPHHDLFSPAEDLA*CGASEL
Trigger: CAGCTCAGAGGCTCCACACAAGGCAAGATCCTCTGC...GGGACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp GTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATCCATCCTTGTCCTCCTaGCTGCCACTAGGCTGGGGC +
Preference number: 5 (lower is better)
Translates to: VFFIHDSTAVLVAPPHHDPSLSS*LPLGWG
Trigger: GCCCCAGCCTAGTGGCAGCAAGGAGGACAAGGATGG...ATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp TTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTCGCGGGAACACAGGGTaGCGGGTGATGGCGATGAGC +
Preference number: 5 (lower is better)
Translates to: FIHDSTAVLVAPPHHDLFRGNTG*RVMAMS
Trigger: GCTCATCGCCATCACCCGCAACCCTGTGTTCCCGCG...AAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS-3UTR CAA 90 bp TTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCTGCTTCTGTAGGTaGCGCACACCACTCTCCCTG +
Preference number: 5 (lower is better)
Translates to: LERFSLFMILQLCSWLRHTCFCR*RTPLSL
Trigger: CAGGGAGAGTGGTGTGCGCAACCTACAGAAGCAGGT...GTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp AGATCTAAAGTGGTGCTAGGAACTGGAGGTCCTCACACATGCTACCTGAACCCCGTTACCTCCACGATCTaGATAAAGCGCGGGAACACA +
Preference number: 5 (lower is better)
Translates to: RSKVVLGTGGPHTCYLNPVTSTI*IKRGNT
Trigger: TGTGTTCCCGCGCTTTATCAAGATCGTGGAGGTAAC...GGGGTTCAGGTAGCATGTGTGAGGACCTCCAGTTCCTAGCACCACTTTAGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
CDS-3UTR CAA 90 bp TCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATACCATGAGCACCTCCTaGGATGTGTCAGTGGCAGCC +
Preference number: 5 (lower is better)
Translates to: SLFMILQLCSWLRHTMIYTMSTS*DVSVAA
Trigger: GGCTGCCACTGACACATCCAAGGAGGTGCTCATGGT...ATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp TTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACTCCAGTAGAGCAAGCTaGCTCAGCTCCTCATCCACC +
Preference number: 5 (lower is better)
Translates to: LERFSLFMILQLCSWLRHSSRAS*LSSSST
Trigger: GGTGGATGAGGAGCTGAGCAAGCTTGCTCTACTGGA...GTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp CATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTCCCTTAACCTCCACGATCTaGATAAAGCGCGGGAACACA +
Preference number: 5 (lower is better)
Translates to: HDSTAVLVAPPHHDLFSPLTSTI*IKRGNT
Trigger: TGTGTTCCCGCGCTTTATCAAGATCGTGGAGGTTAA...GGGACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp ATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTTCCTCCACCTCTTTCTaGCCTCGCTTCAGCTTCCTC +
Preference number: 5 (lower is better)
Translates to: IHDSTAVLVAPPHHDLFSSSTSF*PRFSFL
Trigger: GAGGAAGCTGAAGCGAGGCAAGAAAGAGGTGGAGGA...ACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp TTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTGGAAGCAGAGGATCTaGCCTTGTGTGGAGCCTCTG +
Preference number: 5 (lower is better)
Translates to: FSLFMILQLCSWLRHTMIWKQRI*PCVEPL
Trigger: CAGAGGCTCCACACAAGGCAAGATCCTCTGCTTCCA...AATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp TCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATGTACGCCTGTGCCCCTaGATTTCTGCCACATCTGTC +
Preference number: 5 (lower is better)
Translates to: SLFMILQLCSWLRHTMIYVRLCP*ISATSV
Trigger: GACAGATGTGGCAGAAATCAAGGGGCACAGGCGTAC...ATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp TTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACAGCGGGTTCTCTGTCTaGGTCTTCTTCAGACACTGG +
Preference number: 5 (lower is better)
Translates to: LERFSLFMILQLCSWLRHSGFSV*VFFRHW
Trigger: CCAGTGTCTGAAGAAGACCAAGACAGAGAACCCGCT...GTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp TCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATATCTTGTATGCAGCCTaGCGCAGCACCTTCTCCACC +
Preference number: 5 (lower is better)
Translates to: SLFMILQLCSWLRHTMIYILYAA*RSTFST
Trigger: GGTGGAGAAGGTGCTGCGCAAGGCTGCATACAAGAT...ATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp TTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTACTCTTCCAGAACATCTaGCAGCTCATGGGACTCCGC +
Preference number: 5 (lower is better)
Translates to: LFMILQLCSWLRHTMIYLLFQNI*QLMGLR
Trigger: GCGGAGTCCCATGAGCTGCAAGATGTTCTGGAAGAG...TAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp TTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACCAGATGAATAGCACCTaGGACAGATCCACTGGCACA +
Preference number: 5 (lower is better)
Translates to: LERFSLFMILQLCSWLRHQMNST*DRSTGT
Trigger: TGTGCCAGTGGATCTGTCCAAGGTGCTATTCATCTG...GTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp AAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATACTCTCCCTGCAGTATaGCTTGATGAGCAGTGTGAG +
Preference number: 5 (lower is better)
Translates to: KVFFIHDSTAVLVAPPHHTLPAV*LDEQCE
Trigger: CTCACACTGCTCATCAAGCAATACTGCAGGGAGAGT...ATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp TTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTTCTAGGCTGCCATCCTaGTCCTCCTTGCTGCCACTA +
Preference number: 5 (lower is better)
Translates to: FIHDSTAVLVAPPHHDLFSRLPS*SSLLPL
Trigger: TAGTGGCAGCAAGGAGGACAAGGATGGCAGCCTAGA...AAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp TTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCACGTCCGACTCATaGTTGTCATCTCTCTTTAGG +
Preference number: 5 (lower is better)
Translates to: LERFSLFMILQLCSWLRHTTSDS*LSSLFR
Trigger: CCTAAAGAGAGATGACAACAATGAGTCGGACGTGGT...GTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp ATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTACAATCATTCGCAACTaGTCTCCGAGGTCCTGCATC +
Preference number: 5 (lower is better)
Translates to: IHDSTAVLVAPPHHDLFSTIIRN*SPRSCI
Trigger: GATGCAGGACCTCGGAGACAAGTTGCGAATGATTGT...ACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp TTGGAAAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACTTCCTGTGTGTCTGCTaGATCTTCTCCTCTACCTCA +
Preference number: 5 (lower is better)
Translates to: LERFSLFMILQLCSWLRHFLCVC*IFSSTS
Trigger: TGAGGTAGAGGAGAAGATCAAGCAGACACACAGGAA...GTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTTTCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp AAGGTTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATAGCCCCAATTCCTTCTaGATGATCTTCAACTGCTCC +
Preference number: 5 (lower is better)
Translates to: KVFFIHDSTAVLVAPPHHSPNSF*MIFNCS
Trigger: GGAGCAGTTGAAGATCATCAAGAAGGAATTGGGGCT...ATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAACCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp TTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTTATTTAGTCATGGTGTCAATGACATaGGCCGTGCAGATGAATAGC +
Preference number: 5 (lower is better)
Translates to: FMILQLCSWLRHTMIYLVMVSMT*AVQMNS
Trigger: GCTATTCATCTGCACGGCCAATGTCATTGACACCAT...GACTAAATAAATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS-3UTR CAA 90 bp TTTTCTTTATTCATGATTCTACAGCTGTGCTCGTGGCTCCGCCACACCATGATTACGTCCGACTCATTGTaGTCATCTCTCTTTAGGAAG +
Preference number: 5 (lower is better)
Translates to: FSLFMILQLCSWLRHTMITSDSL*SSLFRK
Trigger: CTTCCTAAAGAGAGATGACAACAATGAGTCGGACGT...AATCATGGTGTGGCGGAGCCACGAGCACAGCTGTAGAATCATGAATAAAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS TCA 72 bp GCCACGACCCGGACGCGCTCGGGACCCGGCCTCCGGTaGCAGCCAGCAGCGGCCGCCGCAGAACCCAGCACC +
Preference number: 6 (lower is better)
Translates to: ATTRTRSGPGLR*QPAAAAAEPST
Trigger: GGTGCTGGGTTCTGCGGCGGCCGCTGCTGGCTGTCACCGGAGGCCGGGTCCCGAGCGCGTCCGGGTCGTGGC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS CAA 90 bp CCGTCCTCCGCACCGCCCTCGGAGGTCTCGTCGCTGCCACCGCGGTaGCCCGAGTCCCACAGCCCCCGCCACTGGACCCCGCCGGGAAGA +
Preference number: 6 (lower is better)
Translates to: PSSAPPSEVSSLPPR*PESHSPRHWTPPGR
Trigger: TCTTCCCGGCGGGGTCCAGTGGCGGGGGCTGTGGGACTCGGGCAACCGCGGTGGCAGCGACGAGACCTCCGAGGGCGGTGCGGAGGACGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS GCA 72 bp CACCGCCCTCGGAGGTCTCGTCGCTGCCACCGCGGTTaGCCGAGTCCCACAGCCCCCGCCACTGGACCCCGC +
Preference number: 6 (lower is better)
Translates to: HRPRRSRRCHRG*PSPTAPATGPR
Trigger: GCGGGGTCCAGTGGCGGGGGCTGTGGGACTCGGGCAACCGCGGTGGCAGCGACGAGACCTCCGAGGGCGGTG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS CAA 72 bp GCACCGCCCTCGGAGGTCTCGTCGCTGCCACCGCGGTaGCCCGAGTCCCACAGCCCCCGCCACTGGACCCCG +
Preference number: 6 (lower is better)
Translates to: APPSEVSSLPPR*PESHSPRHWTP
Trigger: CGGGGTCCAGTGGCGGGGGCTGTGGGACTCGGGCAACCGCGGTGGCAGCGACGAGACCTCCGAGGGCGGTGC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS TCA 72 bp GACCCCGCCGGGAAGAACGCGGCCGCCCCAGGGAGCTaGCATGTCGCAGGCCCGACATCCTCGGCGCAGCCA +
Preference number: 6 (lower is better)
Translates to: DPAGKNAAAPGS*HVAGPTSSAQP
Trigger: TGGCTGCGCCGAGGATGTCGGGCCTGCGACATGTCAGCTCCCTGGGGCGGCCGCGTTCTTCCCGGCGGGGTC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS TCA 72 bp AACACAGGGTTGCGGGTGATGGCGATGAGCGGCAGGTaGGGAAACACATCCGGGACGGTCATGGGCGCGAGC +
Preference number: 6 (lower is better)
Translates to: NTGLRVMAMSGR*GNTSGTVMGAS
Trigger: GCTCGCGCCCATGACCGTCCCGGATGTGTTTCCTCACCTGCCGCTCATCGCCATCACCCGCAACCCTGTGTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047226.10
ENSMUST00000233732.2
CDS CAA 72 bp AGCAGGGGAGCGGGGGCTCTGGTTACCTCCACGATCTaGATAAAGCGCGGGAACACAGGGTTGCGGGTGATG +
Preference number: 6 (lower is better)
Translates to: SRGAGALVTSTI*IKRGNTGLRVM
Trigger: CATCACCCGCAACCCTGTGTTCCCGCGCTTTATCAAGATCGTGGAGGTAACCAGAGCCCCCGCTCCCCTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233732.2
CDS CAA 90 bp CGAGTGACATTGAACTCAGAGGAGTGGTTGTCCAGTAGAGCAAGCTaGCTCAGCTCCTCATCCACCACGTCCATCACATGCTTGGGAACC +
Preference number: 6 (lower is better)
Translates to: RVTLNSEEWLSSRAS*LSSSSTTSITCLGT
Trigger: GGTTCCCAAGCATGTGATGGACGTGGTGGATGAGGAGCTGAGCAAGCTTGCTCTACTGGACAACCACTCCTCTGAGTTCAATGTCACTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS GCA 72 bp TCTCCTCTACCTCACGGCCTAGGCGTTGCTGAAGCTTaGTCAACTCAAACTCCTTCTTCAAGAGAGACAGGG +
Preference number: 6 (lower is better)
Translates to: SPLPHGLGVAEA*STQTPSSRETG
Trigger: CCCTGTCTCTCTTGAAGAAGGAGTTTGAGTTGAGCAAGCTTCAGCAACGCCTAGGCCGTGAGGTAGAGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10
CDS TCA 72 bp TTGATCTTCTCCTCTACCTCACGGCCTAGGCGTTGCTaGAGCTTGCTCAACTCAAACTCCTTCTTCAAGAGA +
Preference number: 6 (lower is better)
Translates to: LIFSSTSRPRRC*SLLNSNSFFKR
Trigger: TCTCTTGAAGAAGGAGTTTGAGTTGAGCAAGCTTCAGCAACGCCTAGGCCGTGAGGTAGAGGAGAAGATCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047226.10