Pregenerated sensors for IFNL3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060747

Ensembl transcript IDs: ENSMUST00000078364.4

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GCTGGGAGTGAATGTGGCTCAGTGTATGAAGAGGCTGGCCCAGGATaGTGGTCAGGGCTGAGTCATTTATGTTCTCCCAGACCTTCAGGG	+
Preference number: 5 (lower is better) Translates to: AGSECGSVYEEAGPG*WSGLSHLCSPRPSG Trigger: CCCTGAAGGTCTGGGAGAACATAAATGACTCAGCCCTGACCACCATCCTGGGCCAGCCTCTTCATACACTGAGCCACATTCACTCCCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078364.4
CDS CCA 72 bp	GGGAGAGGCGGCGACTCGGGGGCTTGGGCTCTGCTGTaGCCTGAAGCTGTGTACAGGTCTGCAGCTGGGAGT	+
Preference number: 6 (lower is better) Translates to: GRGGDSGAWALL*PEAVYRSAAGS Trigger: ACTCCCAGCTGCAGACCTGTACACAGCTTCAGGCCACAGCAGAGCCCAAGCCCCCGAGTCGCCGCCTCTCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078364.4
CDS CAA 72 bp	ACCTTCAGGGTCAGGGCCACCTCAGCCTGCAAGGCCTaGGGGCGCTCTTGGACCTGCAGCTGCTTCAGGTCC	+
Preference number: 6 (lower is better) Translates to: TFRVRATSACKA*GRSWTCSCFRS Trigger: GGACCTGAAGCAGCTGCAGGTCCAAGAGCGCCCCAAGGCCTTGCAGGCTGAGGTGGCCCTGACCCTGAAGGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078364.4

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