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Pregenerated sensors for IFNA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078354

Ensembl transcript IDs: ENSMUST00000105147.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp AAGAACAAATGGGTGCAGATACAGGCATGGATGTACATACTGAAAATAATTGCTGGAGAGCTTATAAAATaGGATGCAGTTTCTAGTCCA +
Preference number: 2 (lower is better)
Translates to: KNKWVQIQAWMYILKIIAGELIK*DAVSSP
Trigger: TGGACTAGAAACTGCATCTCATTTTATAAGCTCTCC...AGCAATTATTTTCAGTATGTACATCCATGCCTGTATCTGCACCCATTTGTTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2
CDS-3UTR CCA 90 bp AAGAACAAATGGGTGCAGATACAGGCATGGATGTACATACTGAAAATAATTGCTAGCAGGGCGTCTTCCTaGGTCAGAGGAGGTTCCTGC +
Preference number: 4 (lower is better)
Translates to: KNKWVQIQAWMYILKIIASRASS*VRGGSC
Trigger: GCAGGAACCTCCTCTGACCCAGGAAGACGCCCTGCT...AGCAATTATTTTCAGTATGTACATCCATGCCTGTATCTGCACCCATTTGTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2
CDS-3UTR GCA 90 bp AAAATAGGCAGGTTGATTGTATTCATACTGAAGGTAACGAGAGTTTTAAAGGAGGAGCCTCCTCATCTGTaGCAGGACCTTCAAGGCCCT +
Preference number: 4 (lower is better)
Translates to: KIGRLIVFILKVTRVLKEEPPHL*QDLQGP
Trigger: AGGGCCTTGAAGGTCCTGGCACAGATGAGGAGGCTC...CTCCTTTAAAACTCTCGTTACCTTCAGTATGAATACAATCAACCTGCCTATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2
CDS-3UTR TCA 90 bp AAAATAGGCAGGTTGATTGTATTCATACTGAAGGTAACGAGAGTTTTAAAGGAGAGGTTTGCAGGTCATTaGGCTGCTGGTGGAGGTCAT +
Preference number: 4 (lower is better)
Translates to: KIGRLIVFILKVTRVLKERFAGH*AAGGGH
Trigger: ATGACCTCCACCAGCAGCTCAATGACCTGCAAACCT...CTCCTTTAAAACTCTCGTTACCTTCAGTATGAATACAATCAACCTGCCTATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2
CDS-3UTR GCA 90 bp AAAATAGGCAGGTTGATTGTATTCATACTGAAGGTAACGAGAGTTTTAAAGGAGTGCATCAGACAGGTTTaGAGGTCATTGAGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: KIGRLIVFILKVTRVLKECIRQV*RSLSCW
Trigger: CCAGCAGCTCAATGACCTGCAAACCTGTCTGATGCA...CTCCTTTAAAACTCTCGTTACCTTCAGTATGAATACAATCAACCTGCCTATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2
CDS-3UTR TCA 90 bp AAAATAGGCAGGTTGATTGTATTCATACTGAAGGTAACGAGAGTTTTAAAGGAGATGAAGCCTTTGATGTaGAGAGGTTCAAGGTCTGCT +
Preference number: 4 (lower is better)
Translates to: KIGRLIVFILKVTRVLKEMKPLM*RGSRSA
Trigger: AGCAGACCTTGAACCTCTTCACATCAAAGGCTTCAT...CTCCTTTAAAACTCTCGTTACCTTCAGTATGAATACAATCAACCTGCCTATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2
CDS GCA 90 bp GTCAGAGGAGGTTCCTGCACCCCCACCTGCTGCATCAGACAGGTTTaGAGGTCATTGAGCTGCTGGTGGAGGTCATTGCAGAATGAGTCT +
Preference number: 5 (lower is better)
Translates to: VRGGSCTPTCCIRQV*RSLSCWWRSLQNES
Trigger: AGACTCATTCTGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAACCTGTCTGATGCAGCAGGTGGGGGTGCAGGAACCTCCTCTGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2
CDS-3UTR CAA 90 bp AAGAACAAATGGGTGCAGATACAGGCATGGATGTACATACTGAAAATAATTGCTCAGGTTTGCAGGTCATaGAGCTGCTGGTGGAGGTCA +
Preference number: 5 (lower is better)
Translates to: KNKWVQIQAWMYILKIIAQVCRS*SCWWRS
Trigger: TGACCTCCACCAGCAGCTCAATGACCTGCAAACCTG...AGCAATTATTTTCAGTATGTACATCCATGCCTGTATCTGCACCCATTTGTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2
CDS-3UTR CAA 90 bp AAGAACAAATGGGTGCAGATACAGGCATGGATGTACATACTGAAAATAATTGCTCTGCATCAGACAGGTTaGCAGGTCATTGAGCTGCTG +
Preference number: 5 (lower is better)
Translates to: KNKWVQIQAWMYILKIIALHQTG*QVIELL
Trigger: CAGCAGCTCAATGACCTGCAAACCTGTCTGATGCAG...AGCAATTATTTTCAGTATGTACATCCATGCCTGTATCTGCACCCATTTGTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2
CDS-3UTR CAA 90 bp AAAATAGGCAGGTTGATTGTATTCATACTGAAGGTAACGAGAGTTTTAAAGGAGAGTCTTGGCAGCAAGTaGACTGAGGAAGACAGGGCT +
Preference number: 5 (lower is better)
Translates to: KIGRLIVFILKVTRVLKESLGSK*TEEDRA
Trigger: AGCCCTGTCTTCCTCAGTCAACTTGCTGCCAAGACT...CTCCTTTAAAACTCTCGTTACCTTCAGTATGAATACAATCAACCTGCCTATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2
CDS GCA 72 bp GGTTCCTGCACCCCCACCTGCTGCATCAGACAGGTTTaGAGGTCATTGAGCTGCTGGTGGAGGTCATTGCAG +
Preference number: 6 (lower is better)
Translates to: GSCTPTCCIRQV*RSLSCWWRSLQ
Trigger: CTGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAACCTGTCTGATGCAGCAGGTGGGGGTGCAGGAACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2
CDS CAA 72 bp AGGTTCCTGCACCCCCACCTGCTGCATCAGACAGGTTaGCAGGTCATTGAGCTGCTGGTGGAGGTCATTGCA +
Preference number: 6 (lower is better)
Translates to: RFLHPHLLHQTG*QVIELLVEVIA
Trigger: TGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAACCTGTCTGATGCAGCAGGTGGGGGTGCAGGAACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2
CDS TCA 72 bp CCCCCACCTGCTGCATCAGACAGGTTTGCAGGTCATTaGGCTGCTGGTGGAGGTCATTGCAGAATGAGTCTA +
Preference number: 6 (lower is better)
Translates to: PPPAASDRFAGH*AAGGGHCRMSL
Trigger: TAGACTCATTCTGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAACCTGTCTGATGCAGCAGGTGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2
CDS CAA 72 bp ACCCCCACCTGCTGCATCAGACAGGTTTGCAGGTCATaGAGCTGCTGGTGGAGGTCATTGCAGAATGAGTCT +
Preference number: 6 (lower is better)
Translates to: TPTCCIRQVCRS*SCWWRSLQNES
Trigger: AGACTCATTCTGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAACCTGTCTGATGCAGCAGGTGGGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2
CDS TCA 72 bp CTCCTTCTCTTCACTCAGTCTTGGCAGCAAGTTGACTaGGGAAGACAGGGCTCTCCAGACTTCTGCTCTGAC +
Preference number: 6 (lower is better)
Translates to: LLLFTQSWQQVD*GRQGSPDFCSD
Trigger: GTCAGAGCAGAAGTCTGGAGAGCCCTGTCTTCCTCAGTCAACTTGCTGCCAAGACTGAGTGAAGAGAAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105147.2