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Pregenerated sensors for HYPK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027245

Ensembl transcript IDs: ENSMUST00000110612.8, ENSMUST00000126764.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGAGCTAGTCAGGTGAGTGATACTAACATACCACTTAGTATCTGCTaGTTAGAGCTGGCAAGATGGCTTGGTAGAAAAGGGCACTTAAAT +
Preference number: 1 (lower is better)
Translates to: RASQVSDTNIPLSIC*LELARWLGRKGHLN
Trigger: ATTTAAGTGCCCTTTTCTACCAAGCCATCTTGCCAGCTCTAAGCAGCAGATACTAAGTGGTATGTTAGTATCACTCACCTGACTAGCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126764.2
3UTR-3UTR GCA 90 bp ATCTTTTGCAGAGGATCCAAATGTACTCTACATTGCCAAGAAAGAGCTAGTCAGCCACTTAGTATCTGCTaGTTAGAGCTGGCAAGATGG +
Preference number: 2 (lower is better)
Translates to: IFCRGSKCTLHCQERASQPLSIC*LELARW
Trigger: CCATCTTGCCAGCTCTAAGCAGCAGATACTAAGTGG...CTGACTAGCTCTTTCTTGGCAATGTAGAGTACATTTGGATCCTCTGCAAAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126764.2
3UTR CAA 90 bp ACTATGGCAGTAGAGGAATCACACACACAATATAAGAGCCTGCATTaGAACATTAGGTACTTCTTTATACTGATTGTTCACACAGTTTCA +
Preference number: 2 (lower is better)
Translates to: TMAVEESHTQYKSLH*NIRYFFILIVHTVS
Trigger: TGAAACTGTGTGAACAATCAGTATAAAGAAGTACCTAATGTTCAAATGCAGGCTCTTATATTGTGTGTGTGATTCCTCTACTGCCATAGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110612.8
ENSMUST00000126764.2
3UTR GCA 72 bp CAGGTGAGTGATACTAACATACCACTTAGTATCTGCTaGTTAGAGCTGGCAAGATGGCTTGGTAGAAAAGGG +
Preference number: 3 (lower is better)
Translates to: QVSDTNIPLSIC*LELARWLGRKG
Trigger: CCCTTTTCTACCAAGCCATCTTGCCAGCTCTAAGCAGCAGATACTAAGTGGTATGTTAGTATCACTCACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126764.2
3UTR GCA 72 bp TGGATCTTTTGCAGAGGATCCAAATGTACTCTACATTaGCAAGAAAGAGCTAGTCAGGTGAGTGATACTAAC +
Preference number: 3 (lower is better)
Translates to: WIFCRGSKCTLH*QERASQVSDTN
Trigger: GTTAGTATCACTCACCTGACTAGCTCTTTCTTGGCAATGTAGAGTACATTTGGATCCTCTGCAAAAGATCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126764.2
CDS-3UTR CCA 90 bp AAACAGCAAAACAGAACACTTTATTTCAGTCAGTCAGTCAGTCCAGAATGTCTAGCCGCTCCGGGCCGCTaGTCTCGGTCTCTAACTCCA +
Preference number: 4 (lower is better)
Translates to: KQQNRTLYFSQSVSPECLAAPGR*SRSLTP
Trigger: TGGAGTTAGAGACCGAGACCAGCGGCCCGGAGCGGC...TAGACATTCTGGACTGACTGACTGACTGAAATAAAGTGTTCTGTTTTGCTGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110612.8
ENSMUST00000126764.2
CDS-3UTR CCA 90 bp AGGTACTTCTTTATACTGATTGTTCACACAGTTTCATCAAGGTCCAACATAGAAGCCGCTCCGGGCCGCTaGTCTCGGTCTCTAACTCCA +
Preference number: 4 (lower is better)
Translates to: RYFFILIVHTVSSRSNIEAAPGR*SRSLTP
Trigger: TGGAGTTAGAGACCGAGACCAGCGGCCCGGAGCGGC...TTCTATGTTGGACCTTGATGAAACTGTGTGAACAATCAGTATAAAGAAGTACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110612.8
ENSMUST00000126764.2
CDS-3UTR CCA 90 bp TGCTGCTTAGAGCTGGCAAGATGGCTTGGTAGAAAAGGGCACTTAAATTTGTTTTCTCCCGCTCTTGTTTaGCCTTTTGTTCCCTGGACC +
Preference number: 4 (lower is better)
Translates to: CCLELARWLGRKGHLNLFSPALV*PFVPWT
Trigger: GGTCCAGGGAACAAAAGGCCAAACAAGAGCGGGAGA...AAACAAATTTAAGTGCCCTTTTCTACCAAGCCATCTTGCCAGCTCTAAGCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000126764.2
CDS-3UTR CCA 90 bp ATTAGAAACACTATGGCAGTAGAGGAATCACACACACAATATAAGAGCCTGCATTCTCCCGCTCTTGTTTaGCCTTTTGTTCCCTGGACC +
Preference number: 4 (lower is better)
Translates to: IRNTMAVEESHTQYKSLHSPALV*PFVPWT
Trigger: GGTCCAGGGAACAAAAGGCCAAACAAGAGCGGGAGA...ATGCAGGCTCTTATATTGTGTGTGTGATTCCTCTACTGCCATAGTGTTTCTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110612.8
ENSMUST00000126764.2
3UTR CAA 72 bp GTAGAGGAATCACACACACAATATAAGAGCCTGCATTaGAACATTAGGTACTTCTTTATACTGATTGTTCAC +
Preference number: 4 (lower is better)
Translates to: VEESHTQYKSLH*NIRYFFILIVH
Trigger: GTGAACAATCAGTATAAAGAAGTACCTAATGTTCAAATGCAGGCTCTTATATTGTGTGTGTGATTCCTCTAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110612.8
ENSMUST00000126764.2
CDS-3UTR CAA 90 bp TGCTGCTTAGAGCTGGCAAGATGGCTTGGTAGAAAAGGGCACTTAAATTTGTTTTTCTCCCGCTCTTGTTaGGCCTTTTGTTCCCTGGAC +
Preference number: 5 (lower is better)
Translates to: CCLELARWLGRKGHLNLFFSRSC*AFCSLD
Trigger: GTCCAGGGAACAAAAGGCCAAACAAGAGCGGGAGAA...AAACAAATTTAAGTGCCCTTTTCTACCAAGCCATCTTGCCAGCTCTAAGCAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000126764.2
CDS-3UTR CAA 90 bp TCCCATGTGGTAGTTATTAGAAACACTATGGCAGTAGAGGAATCACACACACAATTCTCCCGCTCTTGTTaGGCCTTTTGTTCCCTGGAC +
Preference number: 5 (lower is better)
Translates to: SHVVVIRNTMAVEESHTQFSRSC*AFCSLD
Trigger: GTCCAGGGAACAAAAGGCCAAACAAGAGCGGGAGAA...TTGTGTGTGTGATTCCTCTACTGCCATAGTGTTTCTAATAACTACCACATGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110612.8
ENSMUST00000126764.2
CDS-3UTR CAA 90 bp TCCCATGTGGTAGTTATTAGAAACACTATGGCAGTAGAGGAATCACACACACAATTCCTTCTCCCGCTCTaGTTTGGCCTTTTGTTCCCT +
Preference number: 5 (lower is better)
Translates to: SHVVVIRNTMAVEESHTQFLLPL*FGLLFP
Trigger: AGGGAACAAAAGGCCAAACAAGAGCGGGAGAAGGAA...TTGTGTGTGTGATTCCTCTACTGCCATAGTGTTTCTAATAACTACCACATGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110612.8
ENSMUST00000126764.2
CDS-3UTR CAA 90 bp AAAACAGCAAAACAGAACACTTTATTTCAGTCAGTCAGTCAGTCCAGAATGTCTTTCCTTCTCCCGCTCTaGTTTGGCCTTTTGTTCCCT +
Preference number: 5 (lower is better)
Translates to: KTAKQNTLFQSVSQSRMSFLLPL*FGLLFP
Trigger: AGGGAACAAAAGGCCAAACAAGAGCGGGAGAAGGAA...AGACATTCTGGACTGACTGACTGACTGAAATAAAGTGTTCTGTTTTGCTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110612.8
ENSMUST00000126764.2