Pregenerated sensors for HPD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029445Ensembl transcript IDs: ENSMUST00000031398.14, ENSMUST00000144679.2, ENSMUST00000154713.8
Found 95 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | GGAGCCCTGAGGTTCAGCCTTTCAGCCAGTTGGAGATaGCTGATGTGTCCAGCACTTTGCGTGGTCCATGTG | + |
|
Preference number: 3 (lower is better) Translates to: GALRFSLSASWR*LMCPALCVVHV Trigger: CACATGGACCACGCAAAGTGCTGGACACATCAGTCATCTCCAACTGGCTGAAAGGCTGAACCTCAGGGCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | GGGCGTGGCCATGACGTGGGTGGAGCCCTGAGGTTCAGCCTTTCAGCCAGTTGGCAGAAGGTCACCGAGTaGAAATGGAGGAACCGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: GRGHDVGGALRFSLSASWQKVTE*KWRNRP Trigger: AGGCCGGTTCCTCCATTTCCACTCGGTGACCTTCTG...CCAACTGGCTGAAAGGCTGAACCTCAGGGCTCCACCCACGTCATGGCCACGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR TCA 90 bp | GGGCGTGGCCATGACGTGGGTGGAGCCCTGAGGTTCAGCCTTTCAGCCAGTTGGAACGGCCAGTGTAGTTaGTCTTCTCCACCAGGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: GRGHDVGGALRFSLSASWNGQCS*SSPPGC Trigger: ACACCCTGGTGGAGAAGATCAACTACACTGGCCGTT...CCAACTGGCTGAAAGGCTGAACCTCAGGGCTCCACCCACGTCATGGCCACGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR GCA 90 bp | GGGCGTGGCCATGACGTGGGTGGAGCCCTGAGGTTCAGCCTTTCAGCCAGTTGGGTCTTCCACCTCGAATaGGATGTCTTTCACCCCGTC | + |
|
Preference number: 4 (lower is better) Translates to: GRGHDVGGALRFSLSASWVFHLE*DVFHPV Trigger: GACGGGGTGAAAGACATCGCATTCGAGGTGGAAGAC...CCAACTGGCTGAAAGGCTGAACCTCAGGGCTCCACCCACGTCATGGCCACGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | CTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGGGCGTGGCCTTGAGAGCGATGTGCTaGACCCCAGCACCCCCATTA | + |
|
Preference number: 4 (lower is better) Translates to: LSREDSGKADSCNRGGVALRAMC*TPAPPL Trigger: TAATGGGGGTGCTGGGGTCCAGCACATCGCTCTCAA...GGCCACGCCCCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR GCA 90 bp | CTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGGGCGTACTCCGTGTGCACCTaGGTGTCGTCCACGGACCAG | + |
|
Preference number: 4 (lower is better) Translates to: LYSAGRTQARRTLVIEGAYSVCT*VSSTDQ Trigger: CTGGTCCGTGGACGACACGCAGGTGCACACGGAGTA...CGCCCCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR GCA 90 bp | CTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGGGCGGAGCTGTACTCCGTGTaGACCTGCGTGTCGTCCACG | + |
|
Preference number: 4 (lower is better) Translates to: LYSAGRTQARRTLVIEGAELYSV*TCVSST Trigger: CGTGGACGACACGCAGGTGCACACGGAGTACAGCTC...CGCCCCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | GGGCGTGGCCATGACGTGGGTGGAGCCCTGAGGTTCAGCCTTTCAGCCAGTTGGAGTTGGTCACCACAATaGAGCGCAGAGAGCTGTACT | + |
|
Preference number: 4 (lower is better) Translates to: GRGHDVGGALRFSLSASWSWSPQ*SAESCT Trigger: AGTACAGCTCTCTGCGCTCCATTGTGGTGACCAACT...CCAACTGGCTGAAAGGCTGAACCTCAGGGCTCCACCCACGTCATGGCCACGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR GCA 90 bp | CTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGGGCGTGGCCCGTTCTCGAGCTTTCTaGACAATGTGGTCGCAGTCT | + |
|
Preference number: 4 (lower is better) Translates to: LSREDSGKADSCNRGGVARSRAF*TMWSQS Trigger: AGACTGCGACCACATTGTGCAGAAAGCTCGAGAACG...GGCCACGCCCCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR GCA 90 bp | GGGCGTGGCCATGACGTGGGTGGAGCCCTGAGGTTCAGCCTTTCAGCCAGTTGGCAGAACCGGTGGAACTaGAGGTTTTTCAGGTACCAT | + |
|
Preference number: 4 (lower is better) Translates to: GRGHDVGGALRFSLSASWQNRWN*RFFRYH Trigger: ATGGTACCTGAAAAACCTGCAGTTCCACCGGTTCTG...CCAACTGGCTGAAAGGCTGAACCTCAGGGCTCCACCCACGTCATGGCCACGCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR TCA 90 bp | CTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGGGCGTGGCCCTTTGTTCCAGGGATTaGGAGCAGAGCAGAGAACAA | + |
|
Preference number: 4 (lower is better) Translates to: LSREDSGKADSCNRGGVALCSRD*EQSREQ Trigger: TTGTTCTCTGCTCTGCTCTCAATCCCTGGAACAAAG...GGCCACGCCCCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | CAGTTGGAGATGACTGATGTGTCCAGCACTTTGCGTGGTCCATGTGTGGATGGGCTTCCAGGAAGAGTGTaGGCCGGTCCTGCATGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: QLEMTDVSSTLRGPCVDGLPGRV*AGPAWA Trigger: AGCCCATGCAGGACCGGCCCACACTCTTCCTGGAAG...CCCATCCACACATGGACCACGCAAAGTGCTGGACACATCAGTCATCTCCAACTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| 3UTR CAA 72 bp | CGTGGGTGGAGCCCTGAGGTTCAGCCTTTCAGCCAGTaGGAGATGACTGATGTGTCCAGCACTTTGCGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: RGWSPEVQPFSQ*EMTDVSSTLRG Trigger: ACCACGCAAAGTGCTGGACACATCAGTCATCTCCAACTGGCTGAAAGGCTGAACCTCAGGGCTCCACCCACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR GCA 90 bp | CAGTTGGAGATGACTGATGTGTCCAGCACTTTGCGTGGTCCATGTGTGGATGGGCAGCCTGCTTGGCATTaGCAACCCAGAAGGTCACCG | + |
|
Preference number: 4 (lower is better) Translates to: QLEMTDVSSTLRGPCVDGQPAWH*QPRRSP Trigger: CGGTGACCTTCTGGGTTGGCAATGCCAAGCAGGCTG...CCCATCCACACATGGACCACGCAAAGTGCTGGACACATCAGTCATCTCCAACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR GCA 90 bp | GAGGTTCAGCCTTTCAGCCAGTTGGAGATGACTGATGTGTCCAGCACTTTGCGTGTCTTGAGAGCGATGTaGTGGACCCCAGCACCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: EVQPFSQLEMTDVSSTLRVLRAM*WTPAPP Trigger: TGGGGGTGCTGGGGTCCAGCACATCGCTCTCAAGAC...ACGCAAAGTGCTGGACACATCAGTCATCTCCAACTGGCTGAAAGGCTGAACCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR GCA 90 bp | GTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGAGTGTGGGCCGGTCCTaGATGGGCTTGGTGAAGATC | + |
|
Preference number: 4 (lower is better) Translates to: VALLSREDSGKADSCNRGSVGRS*MGLVKI Trigger: GATCTTCACCAAGCCCATGCAGGACCGGCCCACACT...CCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | GTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGGCTCCCGCACAATTTTaGCGCCCCGTTCTCGAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: VALLSREDSGKADSCNRGAPAQF*RPVLEL Trigger: AAGCTCGAGAACGGGGCGCCAAAATTGTGCGGGAGC...CCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR TCA 90 bp | CTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGGGCGACATATTCCTGGATCTaGGACTTCTTCCTGCCCGGA | + |
|
Preference number: 4 (lower is better) Translates to: LYSAGRTQARRTLVIEGATYSWI*DFFLPG Trigger: TCCGGGCAGGAAGAAGTCTCAGATCCAGGAATATGT...CGCCCCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | CAGTTGGAGATGACTGATGTGTCCAGCACTTTGCGTGGTCCATGTGTGGATGGGGTCACCGAGTGGAAATaGAGGAACCGGCCTCTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: QLEMTDVSSTLRGPCVDGVTEWK*RNRPLS Trigger: TGAGAGAGGCCGGTTCCTCCATTTCCACTCGGTGAC...CCCATCCACACATGGACCACGCAAAGTGCTGGACACATCAGTCATCTCCAACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | CAGTTGGAGATGACTGATGTGTCCAGCACTTTGCGTGGTCCATGTGTGGATGGGGTCTTGCTCCACCCATaGCTCCCGCACAATTTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: QLEMTDVSSTLRGPCVDGVLLHP*LPHNFG Trigger: GCCAAAATTGTGCGGGAGCCATGGGTGGAGCAAGAC...CCCATCCACACATGGACCACGCAAAGTGCTGGACACATCAGTCATCTCCAACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | CAGTTGGAGATGACTGATGTGTCCAGCACTTTGCGTGGTCCATGTGTGGATGGGCTTCCTGCCCGGAGCTaGCTCGTTGATGGGCATTTT | + |
|
Preference number: 4 (lower is better) Translates to: QLEMTDVSSTLRGPCVDGLPARS*LVDGHF Trigger: AAAATGCCCATCAACGAGCCAGCTCCGGGCAGGAAG...CCCATCCACACATGGACCACGCAAAGTGCTGGACACATCAGTCATCTCCAACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR GCA 90 bp | GTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGTTCCCAAATTTGTCTTaGTCCACCCATGGCTCCCGC | + |
|
Preference number: 4 (lower is better) Translates to: VALLSREDSGKADSCNRGFPNLS*STHGSR Trigger: GCGGGAGCCATGGGTGGAGCAAGACAAATTTGGGAA...CCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | CAGTTGGAGATGACTGATGTGTCCAGCACTTTGCGTGGTCCATGTGTGGATGGGCCACCAGGGTGTGTGTaGTATCTCCATACGTCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: QLEMTDVSSTLRGPCVDGPPGCV*YLHTSA Trigger: TGCAGACGTATGGAGATACCACACACACCCTGGTGG...CCCATCCACACATGGACCACGCAAAGTGCTGGACACATCAGTCATCTCCAACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | GTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGACGGACCAGAACCGGTaGAACTGCAGGTTTTTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VALLSREDSGKADSCNRGTDQNR*NCRFFR Trigger: CCTGAAAAACCTGCAGTTCCACCGGTTCTGGTCCGT...CCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR TCA 90 bp | GTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGGGTTGTGACGTTGAATaGCTTCCAGGAAGAGTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: VALLSREDSGKADSCNRGGCDVE*LPGRVW Trigger: CCACACTCTTCCTGGAAGTCATTCAACGTCACAACC...CCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR GCA 90 bp | GTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGCATTCTGAGGCAGACTaGATTTCTTGGTCGGGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: VALLSREDSGKADSCNRGHSEAD*ISWSGW Trigger: CCAACCCGACCAAGAAATGCAGTCTGCCTCAGAATG...CCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | AGGGTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGCTTTCTGCACAATGTaGTCGCAGTCTTCCACCTCG | + |
|
Preference number: 4 (lower is better) Translates to: RVALLSREDSGKADSCNRAFCTM*SQSSTS Trigger: CGAGGTGGAAGACTGCGACCACATTGTGCAGAAAGC...TCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTACCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | GTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGTGGATTCCTCGTAGTTaGTCACCACAATGGAGCGCA | + |
|
Preference number: 4 (lower is better) Translates to: VALLSREDSGKADSCNRGWIPRS*SPQWSA Trigger: TGCGCTCCATTGTGGTGACCAACTACGAGGAATCCA...CCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR GCA 90 bp | AGGGTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGTATCTCCATACGTCTaGAGCACAGCAAACTTCACC | + |
|
Preference number: 4 (lower is better) Translates to: RVALLSREDSGKADSCNRVSPYV*STANFT Trigger: GGTGAAGTTTGCTGTGCTGCAGACGTATGGAGATAC...TCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTACCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | AGGGTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGCCTCTCTCAGGCTTTaGTCCTTTGTTGTTGTAGGT | + |
|
Preference number: 4 (lower is better) Translates to: RVALLSREDSGKADSCNRASLRL*SFVVVG Trigger: ACCTACAACAACAAAGGACCAAAGCCTGAGAGAGGC...TCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTACCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | CAGTTGGAGATGACTGATGTGTCCAGCACTTTGCGTGGTCCATGTGTGGATGGGTCTCAAGGTTACATCTaGGTAGTTTTGGAAGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: QLEMTDVSSTLRGPCVDGSQGYI*VVLEAG Trigger: CCCTGCTTCCAAAACTACCCAGATGTAACCTTGAGA...CCCATCCACACATGGACCACGCAAAGTGCTGGACACATCAGTCATCTCCAACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CCA 90 bp | GTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGATGCTCTCTTTCACCTaGATCTTGGCTGACTTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: VALLSREDSGKADSCNRGMLSFT*ILADLR Trigger: TCTCAAGTCAGCCAAGATCCAGGTGAAAGAGAGCAT...CCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR GCA 90 bp | GTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGAACACAATTTTCCCTTaGTTGATGACGTGGCTGACT | + |
|
Preference number: 4 (lower is better) Translates to: VALLSREDSGKADSCNRGNTIFP*LMTWLT Trigger: AGTCAGCCACGTCATCAAGCAAGGGAAAATTGTGTT...CCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | CTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGGGCGTGGCCGCAGCCTGCTTGGCATaGCCAACCCAGAAGGTCACC | + |
|
Preference number: 5 (lower is better) Translates to: LSREDSGKADSCNRGGVAAACLA*PTQKVT Trigger: GGTGACCTTCTGGGTTGGCAATGCCAAGCAGGCTGC...GGCCACGCCCCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS GCA 90 bp | TTGGTCACCACAATGGAGCGCAGAGAGCTGTACTCCGTGTGCACCTaGGTGTCGTCCACGGACCAGAACCGGTGGAACTGCAGGTTTTTC | + |
|
Preference number: 5 (lower is better) Translates to: LVTTMERRELYSVCT*VSSTDQNRWNCRFF Trigger: GAAAAACCTGCAGTTCCACCGGTTCTGGTCCGTGGACGACACGCAGGTGCACACGGAGTACAGCTCTCTGCGCTCCATTGTGGTGACCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | CAGTTGGAGATGACTGATGTGTCCAGCACTTTGCGTGGTCCATGTGTGGATGGGGGCTCCCGCACAATTTaGGCGCCCCGTTCTCGAGCT | + |
|
Preference number: 5 (lower is better) Translates to: QLEMTDVSSTLRGPCVDGGSRTI*APRSRA Trigger: AGCTCGAGAACGGGGCGCCAAAATTGTGCGGGAGCC...CCCATCCACACATGGACCACGCAAAGTGCTGGACACATCAGTCATCTCCAACTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | GGGCGTGGCCATGACGTGGGTGGAGCCCTGAGGTTCAGCCTTTCAGCCAGTTGGTCTTTCACCTGGATCTaGGCTGACTTGAGATTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: GRGHDVGGALRFSLSASWSFTWI*ADLRFS Trigger: GGAGAATCTCAAGTCAGCCAAGATCCAGGTGAAAGA...CCAACTGGCTGAAAGGCTGAACCTCAGGGCTCCACCCACGTCATGGCCACGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | CTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGGGCGCGGTCCTGCATGGGCTaGGTGAAGATCTGTAGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: LYSAGRTQARRTLVIEGARSCMG*VKICRR Trigger: CCTCCTACAGATCTTCACCAAGCCCATGCAGGACCG...CGCCCCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | CTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGGGCGAAGGAAGCAGCCTGCTaGGCATTGCCAACCCAGAAG | + |
|
Preference number: 5 (lower is better) Translates to: LYSAGRTQARRTLVIEGAKEAAC*ALPTQK Trigger: CTTCTGGGTTGGCAATGCCAAGCAGGCTGCTTCCTT...CGCCCCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | AGGGTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGATCCAGGTCAGTGAGGTaGCCCCGTAGGGCTTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: RVALLSREDSGKADSCNRSRSVR*PRRACS Trigger: GGAGCAAGCCCTACGGGGCAACCTCACTGACCTGGA...TCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTACCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS GCA 90 bp | TTCTCGAGCTTTCTGCACAATGTGGTCGCAGTCTTCCACCTCGAATaGGATGTCTTTCACCCCGTCGCCATGCTTCACCAAGTGGTCGCC | + |
|
Preference number: 5 (lower is better) Translates to: FSSFLHNVVAVFHLE*DVFHPVAMLHQVVA Trigger: GGCGACCACTTGGTGAAGCATGGCGACGGGGTGAAAGACATCGCATTCGAGGTGGAAGACTGCGACCACATTGTGCAGAAAGCTCGAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||
| CDS GCA 90 bp | TCCGTGTGCACCTGCGTGTCGTCCACGGACCAGAACCGGTGGAACTaGAGGTTTTTCAGGTACCATTCTGAGGCAGACTGCATTTCTTGG | + |
|
Preference number: 5 (lower is better) Translates to: SVCTCVSSTDQNRWN*RFFRYHSEADCISW Trigger: CCAAGAAATGCAGTCTGCCTCAGAATGGTACCTGAAAAACCTGCAGTTCCACCGGTTCTGGTCCGTGGACGACACGCAGGTGCACACGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CCA 90 bp | CTGTACTCCGTGTGCACCTGCGTGTCGTCCACGGACCAGAACCGGTaGAACTGCAGGTTTTTCAGGTACCATTCTGAGGCAGACTGCATT | + |
|
Preference number: 5 (lower is better) Translates to: LYSVCTCVSSTDQNR*NCRFFRYHSEADCI Trigger: AATGCAGTCTGCCTCAGAATGGTACCTGAAAAACCTGCAGTTCCACCGGTTCTGGTCCGTGGACGACACGCAGGTGCACACGGAGTACAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | CTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGGGCGGCCTTGAACAGAGAGTaGAAGTTGCCCGCTCCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: LYSAGRTQARRTLVIEGAALNRE*KLPAPK Trigger: CTTTGGAGCGGGCAACTTCAACTCTCTGTTCAAGGC...CGCCCCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS GCA 90 bp | TCGCAGTCTTCCACCTCGAATGCGATGTCTTTCACCCCGTCGCCATaGTTCACCAAGTGGTCGCCCATCTCTTTGTTCCAGGGATTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: SQSSTSNAMSFTPSP*FTKWSPISLFQGLR Trigger: TCTCAATCCCTGGAACAAAGAGATGGGCGACCACTTGGTGAAGCATGGCGACGGGGTGAAAGACATCGCATTCGAGGTGGAAGACTGCGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||
| CDS-3UTR CAA 90 bp | GTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGGGGTATCCTTGTATGTaGGGGCCTCGAATCCAGGTA | + |
|
Preference number: 5 (lower is better) Translates to: VALLSREDSGKADSCNRGGYPCM*GPRIQV Trigger: TACCTGGATTCGAGGCCCCAACATACAAGGATACCC...CCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTAC 53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | CAGTTGGAGATGACTGATGTGTCCAGCACTTTGCGTGGTCCATGTGTGGATGGGATGATGTCTTCCGTCTaGAGAGCGATGTGCTGGACC | + |
|
Preference number: 5 (lower is better) Translates to: QLEMTDVSSTLRGPCVDGMMSSV*RAMCWT Trigger: GGTCCAGCACATCGCTCTCAAGACGGAAGACATCAT...CCCATCCACACATGGACCACGCAAAGTGCTGGACACATCAGTCATCTCCAACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS TCA 90 bp | CACGGACCAGAACCGGTGGAACTGCAGGTTTTTCAGGTACCATTCTaGGGCAGACTGCATTTCTTGGTCGGGTTGGTTGCCTACAATGTG | + |
|
Preference number: 5 (lower is better) Translates to: HGPEPVELQVFQVPF*GRLHFLVGLVAYNV Trigger: CACATTGTAGGCAACCAACCCGACCAAGAAATGCAGTCTGCCTCAGAATGGTACCTGAAAAACCTGCAGTTCCACCGGTTCTGGTCCGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | AGGGTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGCCTCTCTCAGGCTTaGGTCCTTTGTTGTTGTAGG | + |
|
Preference number: 5 (lower is better) Translates to: RVALLSREDSGKADSCNRGLSQA*VLCCCR Trigger: CCTACAACAACAAAGGACCAAAGCCTGAGAGAGGCC...TCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTACCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | GTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGTGGATCTTGGCTGACTaGAGATTCTCCCGAAGCAGT | + |
|
Preference number: 5 (lower is better) Translates to: VALLSREDSGKADSCNRGWILAD*RFSRSS Trigger: ACTGCTTCGGGAGAATCTCAAGTCAGCCAAGATCCA...CCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS TCA 90 bp | TGTATGTTGGGGCCTCGAATCCAGGTAAGAAACGGCCAGTGTAGTTaGTCTTCTCCACCAGGGTGTGTGTGGTATCTCCATACGTCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: CMLGPRIQVRNGQCS*SSPPGCVWYLHTSA Trigger: TGCAGACGTATGGAGATACCACACACACCCTGGTGGAGAAGATCAACTACACTGGCCGTTTCTTACCTGGATTCGAGGCCCCAACATACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||
| CDS-3UTR CAA 90 bp | GAGGTTCAGCCTTTCAGCCAGTTGGAGATGACTGATGTGTCCAGCACTTTGCGTTCTTGGTCGGGTTGGTaGCCTACAATGTGGTCAATG | + |
|
Preference number: 5 (lower is better) Translates to: EVQPFSQLEMTDVSSTLRSWSGW*PTMWSM Trigger: CATTGACCACATTGTAGGCAACCAACCCGACCAAGA...ACGCAAAGTGCTGGACACATCAGTCATCTCCAACTGGCTGAAAGGCTGAACCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | AGGGTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGACTGGTGGTTGTGACGTaGAATGACTTCCAGGAAGAG | + |
|
Preference number: 5 (lower is better) Translates to: RVALLSREDSGKADSCNRLVVVT*NDFQEE Trigger: CTCTTCCTGGAAGTCATTCAACGTCACAACCACCAG...TCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTACCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | GAGGTTCAGCCTTTCAGCCAGTTGGAGATGACTGATGTGTCCAGCACTTTGCGTTCCTCCTCGAACGCCTaGAACAGAGAGTTGAAGTTG | + |
|
Preference number: 5 (lower is better) Translates to: EVQPFSQLEMTDVSSTLRSSSNA*NRELKL Trigger: CAACTTCAACTCTCTGTTCAAGGCGTTCGAGGAGGA...ACGCAAAGTGCTGGACACATCAGTCATCTCCAACTGGCTGAAAGGCTGAACCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CCA 90 bp | ATAGTCCACATATTCCTGGATCTGAGACTTCTTCCTGCCCGGAGCTaGCTCGTTGATGGGCATTTTGATGGATTCCTCGTAGTTGGTCAC | + |
|
Preference number: 5 (lower is better) Translates to: IVHIFLDLRLLPARS*LVDGHFDGFLVVGH Trigger: GTGACCAACTACGAGGAATCCATCAAAATGCCCATCAACGAGCCAGCTCCGGGCAGGAAGAAGTCTCAGATCCAGGAATATGTGGACTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | AGGGTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAACAATTTTCCCTTGCTaGATGACGTGGCTGACTACC | + |
|
Preference number: 5 (lower is better) Translates to: RVALLSREDSGKADSCNRTIFPC*MTWLTT Trigger: GGTAGTCAGCCACGTCATCAAGCAAGGGAAAATTGT...TCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTACCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | GTAGCTTTACTCAGCAGGGAGGACTCAGGCAAGGCGGACTCTTGTAATAGAGGGTACATCTGGGTAGTTTaGGAAGCAGGGTATCCTTGT | + |
|
Preference number: 5 (lower is better) Translates to: VALLSREDSGKADSCNRGYIWVV*EAGYPC Trigger: ACAAGGATACCCTGCTTCCAAAACTACCCAGATGTA...CCCTCTATTACAAGAGTCCGCCTTGCCTGAGTCCTCCCTGCTGAGTAAAGCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS-3UTR CAA 90 bp | GAGGTTCAGCCTTTCAGCCAGTTGGAGATGACTGATGTGTCCAGCACTTTGCGTAAACACAATTTTCCCTaGCTTGATGACGTGGCTGAC | + |
|
Preference number: 5 (lower is better) Translates to: EVQPFSQLEMTDVSSTLRKHNFP*LDDVAD Trigger: GTCAGCCACGTCATCAAGCAAGGGAAAATTGTGTTT...ACGCAAAGTGCTGGACACATCAGTCATCTCCAACTGGCTGAAAGGCTGAACCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CCA 90 bp | TTTTTCAGGTACCATTCTGAGGCAGACTGCATTTCTTGGTCGGGTTaGTTGCCTACAATGTGGTCAATGATCTCAAGGTTACATCTGGGT | + |
|
Preference number: 5 (lower is better) Translates to: FFRYHSEADCISWSG*LPTMWSMISRLHLG Trigger: ACCCAGATGTAACCTTGAGATCATTGACCACATTGTAGGCAACCAACCCGACCAAGAAATGCAGTCTGCCTCAGAATGGTACCTGAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CCA 90 bp | AACTGCAGGTTTTTCAGGTACCATTCTGAGGCAGACTGCATTTCTTaGTCGGGTTGGTTGCCTACAATGTGGTCAATGATCTCAAGGTTA | + |
|
Preference number: 5 (lower is better) Translates to: NCRFFRYHSEADCIS*SGWLPTMWSMISRL Trigger: TAACCTTGAGATCATTGACCACATTGTAGGCAACCAACCCGACCAAGAAATGCAGTCTGCCTCAGAATGGTACCTGAAAAACCTGCAGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS GCA 72 bp | GTCACCACAATGGAGCGCAGAGAGCTGTACTCCGTGTaGACCTGCGTGTCGTCCACGGACCAGAACCGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: VTTMERRELYSV*TCVSSTDQNRW Trigger: CCACCGGTTCTGGTCCGTGGACGACACGCAGGTGCACACGGAGTACAGCTCTCTGCGCTCCATTGTGGTGAC 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS TCA 72 bp | TGCCCGCTCCAAAGCCCTGGTGGTTGTGACGTTGAATaGCTTCCAGGAAGAGTGTGGGCCGGTCCTGCATGG | + |
|
Preference number: 6 (lower is better) Translates to: CPLQSPGGCDVE*LPGRVWAGPAW Trigger: CCATGCAGGACCGGCCCACACTCTTCCTGGAAGTCATTCAACGTCACAACCACCAGGGCTTTGGAGCGGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CCA 72 bp | GGGGCGGCCAAGAACTCCGTGCCTCGCTCCCTCAAGTaGCGGATTGCTGTGATGATGTCTTCCGTCTTGAGA | + |
|
Preference number: 6 (lower is better) Translates to: GAAKNSVPRSLK*RIAVMMSSVLR Trigger: TCTCAAGACGGAAGACATCATCACAGCAATCCGCCACTTGAGGGAGCGAGGCACGGAGTTCTTGGCCGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CAA 72 bp | AGGTTGCCCCGTAGGGCTTGCTCCTCCTCGAACGCCTaGAACAGAGAGTTGAAGTTGCCCGCTCCAAAGCCC | + |
|
Preference number: 6 (lower is better) Translates to: RLPRRACSSSNA*NRELKLPAPKP Trigger: GGGCTTTGGAGCGGGCAACTTCAACTCTCTGTTCAAGGCGTTCGAGGAGGAGCAAGCCCTACGGGGCAACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CAA 90 bp | AGGTCAGTGAGGTTGCCCCGTAGGGCTTGCTCCTCCTCGAACGCCTaGAACAGAGAGTTGAAGTTGCCCGCTCCAAAGCCCTGGTGGTTG | + |
|
Preference number: 6 (lower is better) Translates to: RSVRLPRRACSSSNA*NRELKLPAPKPWWL Trigger: CAACCACCAGGGCTTTGGAGCGGGCAACTTCAACTCTCTGTTCAAGGCGTTCGAGGAGGAGCAAGCCCTACGGGGCAACCTCACTGACCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS TCA 72 bp | TGGGTGCAAGCCGTACCTGGTGGTTGTGACGTTGAATaGCTTCCAGGAAGAGTGTGGGCCGGTCCTGCATGG | + |
|
Preference number: 6 (lower is better) Translates to: WVQAVPGGCDVE*LPGRVWAGPAW Trigger: CCATGCAGGACCGGCCCACACTCTTCCTGGAAGTCATTCAACGTCACAACCACCAGGTACGGCTTGCACCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144679.2 |
||
| CDS CCA 72 bp | GCCTGCTTGGCATTGCCAACCCAGAAGGTCACCGAGTaGAAATGGAGGAACCGGCCTCTCTCAGGCTTTGGT | + |
|
Preference number: 6 (lower is better) Translates to: ACLALPTQKVTE*KWRNRPLSGFG Trigger: ACCAAAGCCTGAGAGAGGCCGGTTCCTCCATTTCCACTCGGTGACCTTCTGGGTTGGCAATGCCAAGCAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CAA 72 bp | GAAGTTGCCCGCTCCAAAGCCCTGGTGGTTGTGACGTaGAATGACTTCCAGGAAGAGTGTGGGCCGGTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: EVARSKALVVVT*NDFQEECGPVL Trigger: CAGGACCGGCCCACACTCTTCCTGGAAGTCATTCAACGTCACAACCACCAGGGCTTTGGAGCGGGCAACTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CAA 72 bp | TCCTCTGGGTGCAAGCCGTACCTGGTGGTTGTGACGTaGAATGACTTCCAGGAAGAGTGTGGGCCGGTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: SSGCKPYLVVVT*NDFQEECGPVL Trigger: CAGGACCGGCCCACACTCTTCCTGGAAGTCATTCAACGTCACAACCACCAGGTACGGCTTGCACCCAGAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144679.2 |
||
| CDS GCA 72 bp | TCCCGCACAATTTTGGCGCCCCGTTCTCGAGCTTTCTaGACAATGTGGTCGCAGTCTTCCACCTCGAATGCG | + |
|
Preference number: 6 (lower is better) Translates to: SRTILAPRSRAF*TMWSQSSTSNA Trigger: CGCATTCGAGGTGGAAGACTGCGACCACATTGTGCAGAAAGCTCGAGAACGGGGCGCCAAAATTGTGCGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||
| CDS GCA 72 bp | ACCTGCGTGTCGTCCACGGACCAGAACCGGTGGAACTaGAGGTTTTTCAGGTACCATTCTGAGGCAGACTGC | + |
|
Preference number: 6 (lower is better) Translates to: TCVSSTDQNRWN*RFFRYHSEADC Trigger: GCAGTCTGCCTCAGAATGGTACCTGAAAAACCTGCAGTTCCACCGGTTCTGGTCCGTGGACGACACGCAGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CCA 72 bp | GTGTGCACCTGCGTGTCGTCCACGGACCAGAACCGGTaGAACTGCAGGTTTTTCAGGTACCATTCTGAGGCA | + |
|
Preference number: 6 (lower is better) Translates to: VCTCVSSTDQNR*NCRFFRYHSEA Trigger: TGCCTCAGAATGGTACCTGAAAAACCTGCAGTTCCACCGGTTCTGGTCCGTGGACGACACGCAGGTGCACAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS TCA 72 bp | CCAGGAAGAGTGTGGGCCGGTCCTGCATGGGCTTGGTaGAGATCTGTAGGAGGTAGCCTTTCTCGTCATAGT | + |
|
Preference number: 6 (lower is better) Translates to: PGRVWAGPAWAW*RSVGGSLSRHS Trigger: ACTATGACGAGAAAGGCTACCTCCTACAGATCTTCACCAAGCCCATGCAGGACCGGCCCACACTCTTCCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000144679.2 |
||
| CDS GCA 72 bp | GGCCCCTGTAGGCCAGAGGTTCAAAGCCCATCTTGTTaGAGTAGAAGGAAGCAGCCTGCTTGGCATTGCCAA | + |
|
Preference number: 6 (lower is better) Translates to: GPCRPEVQSPSC*SRRKQPAWHCQ Trigger: TTGGCAATGCCAAGCAGGCTGCTTCCTTCTACTGCAACAAGATGGGCTTTGAACCTCTGGCCTACAGGGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS GCA 72 bp | TCCACCTCGAATGCGATGTCTTTCACCCCGTCGCCATaGTTCACCAAGTGGTCGCCCATCTCTTTGTTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: STSNAMSFTPSP*FTKWSPISLFQ Trigger: CTGGAACAAAGAGATGGGCGACCACTTGGTGAAGCATGGCGACGGGGTGAAAGACATCGCATTCGAGGTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||
| CDS CCA 72 bp | TTGGCATTGCCAACCCAGAAGGTCACCGAGTGGAAATaGAGGAACCGGCCTCTCTCAGGCTTTGGTCCTTTG | + |
|
Preference number: 6 (lower is better) Translates to: LALPTQKVTEWK*RNRPLSGFGPL Trigger: CAAAGGACCAAAGCCTGAGAGAGGCCGGTTCCTCCATTTCCACTCGGTGACCTTCTGGGTTGGCAATGCCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CCA 72 bp | GCGATGTCTTTCACCCCGTCGCCATGCTTCACCAAGTaGTCGCCCATCTCTTTGTTCCAGGGATTGAGAGCA | + |
|
Preference number: 6 (lower is better) Translates to: AMSFTPSPCFTK*SPISLFQGLRA Trigger: TGCTCTCAATCCCTGGAACAAAGAGATGGGCGACCACTTGGTGAAGCATGGCGACGGGGTGAAAGACATCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||
| CDS CAA 72 bp | CTCAAGTGGCGGATTGCTGTGATGATGTCTTCCGTCTaGAGAGCGATGTGCTGGACCCCAGCACCCCCATTA | + |
|
Preference number: 6 (lower is better) Translates to: LKWRIAVMMSSV*RAMCWTPAPPL Trigger: TAATGGGGGTGCTGGGGTCCAGCACATCGCTCTCAAGACGGAAGACATCATCACAGCAATCCGCCACTTGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CAA 90 bp | TCCATACGTCTGCAGCACAGCAAACTTCACCTTCCCAAATTTGTCTaGCTCCACCCATGGCTCCCGCACAATTTTGGCGCCCCGTTCTCG | + |
|
Preference number: 6 (lower is better) Translates to: SIRLQHSKLHLPKFV*LHPWLPHNFGAPFS Trigger: CGAGAACGGGGCGCCAAAATTGTGCGGGAGCCATGGGTGGAGCAAGACAAATTTGGGAAGGTGAAGTTTGCTGTGCTGCAGACGTATGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||
| CDS CCA 72 bp | ATTTGTCTTGCTCCACCCATGGCTCCCGCACAATTTTaGCGCCCCGTTCTCGAGCTTTCTGCACAATGTGGT | + |
|
Preference number: 6 (lower is better) Translates to: ICLAPPMAPAQF*RPVLELSAQCG Trigger: ACCACATTGTGCAGAAAGCTCGAGAACGGGGCGCCAAAATTGTGCGGGAGCCATGGGTGGAGCAAGACAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||
| CDS CCA 72 bp | TGCAGCTCCTCCAGGACGTCCATGCTCTCTTTCACCTaGATCTTGGCTGACTTGAGATTCTCCCGAAGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: CSSSRTSMLSFT*ILADLRFSRSS Trigger: ACTGCTTCGGGAGAATCTCAAGTCAGCCAAGATCCAGGTGAAAGAGAGCATGGACGTCCTGGAGGAGCTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000144679.2 |
||
| CDS CAA 72 bp | AATTTGTCTTGCTCCACCCATGGCTCCCGCACAATTTaGGCGCCCCGTTCTCGAGCTTTCTGCACAATGTGG | + |
|
Preference number: 6 (lower is better) Translates to: NLSCSTHGSRTI*APRSRAFCTMW Trigger: CCACATTGTGCAGAAAGCTCGAGAACGGGGCGCCAAAATTGTGCGGGAGCCATGGGTGGAGCAAGACAAATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||
| CDS TCA 72 bp | GGGCCTCGAATCCAGGTAAGAAACGGCCAGTGTAGTTaGTCTTCTCCACCAGGGTGTGTGTGGTATCTCCAT | + |
|
Preference number: 6 (lower is better) Translates to: GPRIQVRNGQCS*SSPPGCVWYLH Trigger: ATGGAGATACCACACACACCCTGGTGGAGAAGATCAACTACACTGGCCGTTTCTTACCTGGATTCGAGGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||
| CDS TCA 72 bp | GAACCGGTGGAACTGCAGGTTTTTCAGGTACCATTCTaGGGCAGACTGCATTTCTTGGTCGGGTTGGTTGCC | + |
|
Preference number: 6 (lower is better) Translates to: EPVELQVFQVPF*GRLHFLVGLVA Trigger: GGCAACCAACCCGACCAAGAAATGCAGTCTGCCTCAGAATGGTACCTGAAAAACCTGCAGTTCCACCGGTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS GCA 72 bp | TTTCTGCACAATGTGGTCGCAGTCTTCCACCTCGAATaGGATGTCTTTCACCCCGTCGCCATGCTTCACCAA | + |
|
Preference number: 6 (lower is better) Translates to: FLHNVVAVFHLE*DVFHPVAMLHQ Trigger: TTGGTGAAGCATGGCGACGGGGTGAAAGACATCGCATTCGAGGTGGAAGACTGCGACCACATTGTGCAGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||
| CDS CCA 72 bp | ATATTCCTGGATCTGAGACTTCTTCCTGCCCGGAGCTaGCTCGTTGATGGGCATTTTGATGGATTCCTCGTA | + |
|
Preference number: 6 (lower is better) Translates to: IFLDLRLLPARS*LVDGHFDGFLV Trigger: TACGAGGAATCCATCAAAATGCCCATCAACGAGCCAGCTCCGGGCAGGAAGAAGTCTCAGATCCAGGAATAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CAA 72 bp | ATCTGGGTAGTTTTGGAAGCAGGGTATCCTTGTATGTaGGGGCCTCGAATCCAGGTAAGAAACGGCCAGTGT | + |
|
Preference number: 6 (lower is better) Translates to: IWVVLEAGYPCM*GPRIQVRNGQC Trigger: ACACTGGCCGTTTCTTACCTGGATTCGAGGCCCCAACATACAAGGATACCCTGCTTCCAAAACTACCCAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||
| CDS TCA 72 bp | CAGGACGTCCATGCTCTCTTTCACCTGGATCTTGGCTaGCTTGAGATTCTCCCGAAGCAGTTTGTAGTAAGA | + |
|
Preference number: 6 (lower is better) Translates to: QDVHALFHLDLG*LEILPKQFVVR Trigger: TCTTACTACAAACTGCTTCGGGAGAATCTCAAGTCAGCCAAGATCCAGGTGAAAGAGAGCATGGACGTCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000144679.2 |
||
| CDS GCA 72 bp | AACTGCAGGTTTTTCAGGTACCATTCTGAGGCAGACTaGATTTCTTGGTCGGGTTGGTTGCCTACAATGTGG | + |
|
Preference number: 6 (lower is better) Translates to: NCRFFRYHSEAD*ISWSGWLPTMW Trigger: CCACATTGTAGGCAACCAACCCGACCAAGAAATGCAGTCTGCCTCAGAATGGTACCTGAAAAACCTGCAGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CAA 72 bp | AGGTTACATCTGGGTAGTTTTGGAAGCAGGGTATCCTaGTATGTTGGGGCCTCGAATCCAGGTAAGAAACGG | + |
|
Preference number: 6 (lower is better) Translates to: RLHLGSFGSRVS*YVGASNPGKKR Trigger: CCGTTTCTTACCTGGATTCGAGGCCCCAACATACAAGGATACCCTGCTTCCAAAACTACCCAGATGTAACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||
| CDS CAA 90 bp | TTCAGGTACCATTCTGAGGCAGACTGCATTTCTTGGTCGGGTTGGTaGCCTACAATGTGGTCAATGATCTCAAGGTTACATCTGGGTAGT | + |
|
Preference number: 6 (lower is better) Translates to: FRYHSEADCISWSGW*PTMWSMISRLHLGS Trigger: ACTACCCAGATGTAACCTTGAGATCATTGACCACATTGTAGGCAACCAACCCGACCAAGAAATGCAGTCTGCCTCAGAATGGTACCTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CCA 72 bp | TACCATTCTGAGGCAGACTGCATTTCTTGGTCGGGTTaGTTGCCTACAATGTGGTCAATGATCTCAAGGTTA | + |
|
Preference number: 6 (lower is better) Translates to: YHSEADCISWSG*LPTMWSMISRL Trigger: TAACCTTGAGATCATTGACCACATTGTAGGCAACCAACCCGACCAAGAAATGCAGTCTGCCTCAGAATGGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CCA 72 bp | TTTTTCAGGTACCATTCTGAGGCAGACTGCATTTCTTaGTCGGGTTGGTTGCCTACAATGTGGTCAATGATC | + |
|
Preference number: 6 (lower is better) Translates to: FFRYHSEADCIS*SGWLPTMWSMI Trigger: GATCATTGACCACATTGTAGGCAACCAACCCGACCAAGAAATGCAGTCTGCCTCAGAATGGTACCTGAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031398.14 |
||
| CDS CAA 72 bp | CATTCTGAGGCAGACTGCATTTCTTGGTCGGGTTGGTaGCCTACAATGTGGTCAATGATCTCAAGGTTACAT | + |
|
Preference number: 6 (lower is better) Translates to: HSEADCISWSGW*PTMWSMISRLH Trigger: ATGTAACCTTGAGATCATTGACCACATTGTAGGCAACCAACCCGACCAAGAAATGCAGTCTGCCTCAGAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||
| CDS TCA 72 bp | TTTCTTGGTCGGGTTGGTTGCCTACAATGTGGTCAATaGTCTCAAGGTTACATCTGGGTAGTTTTGGAAGCA | + |
|
Preference number: 6 (lower is better) Translates to: FLGRVGCLQCGQ*SQGYIWVVLEA Trigger: TGCTTCCAAAACTACCCAGATGTAACCTTGAGATCATTGACCACATTGTAGGCAACCAACCCGACCAAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031398.14 ENSMUST00000154713.8 |
||