RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HOOK3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037234

Ensembl transcript IDs: ENSMUST00000037182.14, ENSMUST00000147613.3, ENSMUST00000211683.2

Found 210 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAACCCTTGGGAGTTGCTGTCCCCTGTCACCTAGGCCCCAGGAAGTaGGCCCAGGCAAGTGCTACGCTTCCTGCTGAGCCATTGTGCTGG +
Preference number: 1 (lower is better)
Translates to: QPLGVAVPCHLGPRK*AQASATLPAEPLCW
Trigger: CCAGCACAATGGCTCAGCAGGAAGCGTAGCACTTGCCTGGGCTCACTTCCTGGGGCCTAGGTGACAGGGGACAGCAACTCCCAAGGGTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 90 bp CTGGCATCTGTTGAGTGTGGAGACCAGAGGACAACCCTTGGGAGTTaGTGTCCCCTGTCACCTAGGCCCCAGGAAGTGAGCCCAGGCAAG +
Preference number: 1 (lower is better)
Translates to: LASVECGDQRTTLGS*CPLSPRPQEVSPGK
Trigger: CTTGCCTGGGCTCACTTCCTGGGGCCTAGGTGACAGGGGACAGCAACTCCCAAGGGTTGTCCTCTGGTCTCCACACTCAACAGATGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 90 bp GCTGCTCTCTGTCCCACTGTAGTGCTCTCCACTATTTCCTGTGCCTaGTGCTTTGGTCTGCCCAGGCGGATGCCTCACAGCCTGCTTGAA +
Preference number: 1 (lower is better)
Translates to: AALCPTVVLSTISCA*CFGLPRRMPHSLLE
Trigger: TTCAAGCAGGCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGGCACAGGAAATAGTGGAGAGCACTACAGTGGGACAGAGAGCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 90 bp CAGCTCAGAGCTCTCGCAGTGAGTCTGACCAGACATCTGCGGGTATaGGCAGTGCCCTCTGCATGCCTGGGGATTGTCTTTTACTCACTC +
Preference number: 1 (lower is better)
Translates to: QLRALAVSLTRHLRV*AVPSACLGIVFYSL
Trigger: GAGTGAGTAAAAGACAATCCCCAGGCATGCAGAGGGCACTGCCCATACCCGCAGATGTCTGGTCAGACTCACTGCGAGAGCTCTGAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 90 bp TCTCCCTGTGTAGACCAGGCTAGCCTTGAACTCAGAGAGATCTCCTaGCTCTGTCTCCTAAGTGCTGAAACAAGGTCTCATTGCATAGCC +
Preference number: 1 (lower is better)
Translates to: SPCVDQASLELREIS*LCLLSAETRSHCIA
Trigger: GGCTATGCAATGAGACCTTGTTTCAGCACTTAGGAGACAGAGGCAGGAGATCTCTCTGAGTTCAAGGCTAGCCTGGTCTACACAGGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 90 bp CTTGTGATCCTGGTGCCTGAGCCTGCTGCTGGGATTATGGGTGTGTaGCACCATCCTGGCTTTCTAAGTTTTAGTTCTGGAAAGGAGAAC +
Preference number: 1 (lower is better)
Translates to: LVILVPEPAAGIMGV*HHPGFLSFSSGKEN
Trigger: GTTCTCCTTTCCAGAACTAAAACTTAGAAAGCCAGGATGGTGGCACACACCCATAATCCCAGCAGCAGGCTCAGGCACCAGGATCACAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 90 bp CTGCCTGCATGTATGTCTGTATGGCACATGTGTACCTGGTGCCCATaGAGGTCAGAAGATGGCATTGGAAGATTCCCTGAAACTGGAGTT +
Preference number: 1 (lower is better)
Translates to: LPACMSVWHMCTWCP*RSEDGIGRFPETGV
Trigger: AACTCCAGTTTCAGGGAATCTTCCAATGCCATCTTCTGACCTCCATGGGCACCAGGTACACATGTGCCATACAGACATACATGCAGGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 90 bp GTGTTTTGCCTGCCTGCATGTATGTCTGTATGGCACATGTGTACCTaGTGCCCATGGAGGTCAGAAGATGGCATTGGAAGATTCCCTGAA +
Preference number: 1 (lower is better)
Translates to: VFCLPACMSVWHMCT*CPWRSEDGIGRFPE
Trigger: TTCAGGGAATCTTCCAATGCCATCTTCTGACCTCCATGGGCACCAGGTACACATGTGCCATACAGACATACATGCAGGCAGGCAAAACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 90 bp TTTTGCCTGCCTGCATGTATGTCTGTATGGCACATGTGTACCTGGTaGCCATGGAGGTCAGAAGATGGCATTGGAAGATTCCCTGAAACT +
Preference number: 1 (lower is better)
Translates to: FCLPACMSVWHMCTW*PWRSEDGIGRFPET
Trigger: AGTTTCAGGGAATCTTCCAATGCCATCTTCTGACCTCCATGGGCACCAGGTACACATGTGCCATACAGACATACATGCAGGCAGGCAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 90 bp TTTTTAAAAATTCCTAGTGGCAAGACCTTTCTACCTTGCTGTGGCTaGCTGGACATGGCCTGGGTAGGATCTTCTTGTGCTGGTTGCTTG +
Preference number: 1 (lower is better)
Translates to: FLKIPSGKTFLPCCG*LDMAWVGSSCAGCL
Trigger: CAAGCAACCAGCACAAGAAGATCCTACCCAGGCCATGTCCAGCCAGCCACAGCAAGGTAGAAAGGTCTTGCCACTAGGAATTTTTAAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000211683.2
3UTR TCA 90 bp CATATAAGAACTTCAAACCTTAGAATACGTTTAATTTCTCCCCTCTaGGTGATCCTGCCAGGTGCCACAGGTCTGACTAGCACCTCTGCC +
Preference number: 1 (lower is better)
Translates to: HIRTSNLRIRLISPL*VILPGATGLTSTSA
Trigger: GGCAGAGGTGCTAGTCAGACCTGTGGCACCTGGCAGGATCACTCAGAGGGGAGAAATTAAACGTATTCTAAGGTTTGAAGTTCTTATATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 90 bp GAAGTATGCTTTTTAAAAATTCCTAGTGGCAAGACCTTTCTACCTTaGTGTGGCTGGCTGGACATGGCCTGGGTAGGATCTTCTTGTGCT +
Preference number: 1 (lower is better)
Translates to: EVCFLKIPSGKTFLP*CGWLDMAWVGSSCA
Trigger: AGCACAAGAAGATCCTACCCAGGCCATGTCCAGCCAGCCACAGCAAGGTAGAAAGGTCTTGCCACTAGGAATTTTTAAAAAGCATACTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000211683.2
3UTR TCA 90 bp TTTCTAGATTACGATGATGAGGAATATATCCTCAGAACTCTCGACTaGATTGTCAGCCAGAGGGGGAATCTCTTACAGAACAAAGGAGGG +
Preference number: 1 (lower is better)
Translates to: FLDYDDEEYILRTLD*IVSQRGNLLQNKGG
Trigger: CCCTCCTTTGTTCTGTAAGAGATTCCCCCTCTGGCTGACAATTCAGTCGAGAGTTCTGAGGATATATTCCTCATCATCGTAATCTAGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 90 bp GAGAACTATTTAAAACCTTTCAAGCATACTTATTTGTGTGTGCACTaGCATCTGTTGAGTGTGGAGACCAGAGGACAACCCTTGGGAGTT +
Preference number: 1 (lower is better)
Translates to: ENYLKPFKHTYLCVH*HLLSVETRGQPLGV
Trigger: AACTCCCAAGGGTTGTCCTCTGGTCTCCACACTCAACAGATGCCAGTGCACACACAAATAAGTATGCTTGAAAGGTTTTAAATAGTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR TCA 90 bp CCTGCTGCTTTGGTCTGCCCAGGCGGATGCCTCACAGCCTGCTTGAACATTTGTTTAATTTCTCCCCTCTaGGTGATCCTGCCAGGTGCC +
Preference number: 2 (lower is better)
Translates to: PAALVCPGGCLTACLNICLISPL*VILPGA
Trigger: GGCACCTGGCAGGATCACTCAGAGGGGAGAAATTAA...ACAAATGTTCAAGCAGGCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CCA 90 bp TGCTGTCCCCTGTCACCTAGGCCCCAGGAAGTGAGCCCAGGCAAGTGCTACGCTAAGACCATGTGTTCATaGCAGCCTGGGTTACATAAA +
Preference number: 2 (lower is better)
Translates to: CCPLSPRPQEVSPGKCYAKTMCS*QPGLHK
Trigger: TTTATGTAACCCAGGCTGCCATGAACACATGGTCTT...AGCGTAGCACTTGCCTGGGCTCACTTCCTGGGGCCTAGGTGACAGGGGACAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR GCA 90 bp AATCCTGAGACTGAGGTGCCAACAGGAAACAGCACGTACAGCAGAAATGGAGCAATGGGCAGTGCCCTCTaGATGCCTGGGGATTGTCTT +
Preference number: 2 (lower is better)
Translates to: NPETEVPTGNSTYSRNGAMGSAL*MPGDCL
Trigger: AAGACAATCCCCAGGCATGCAGAGGGCACTGCCCAT...TGCTCCATTTCTGCTGTACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 90 bp CCAGACATCTGCGGGTATGGGCAGTGCCCTCTGCATGCCTGGGGATaGTCTTTTACTCACTCGCTTGTTCTTCTCACGGCATTTAATTCT +
Preference number: 2 (lower is better)
Translates to: PDICGYGQCPLHAWG*SFTHSLVLLTAFNS
Trigger: AGAATTAAATGCCGTGAGAAGAACAAGCGAGTGAGTAAAAGACAATCCCCAGGCATGCAGAGGGCACTGCCCATACCCGCAGATGTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CCA 90 bp AATCCTGAGACTGAGGTGCCAACAGGAAACAGCACGTACAGCAGAAATGGAGCACTGCCTTGTCCCAACTaGACCCCCACATTTGCATGT +
Preference number: 2 (lower is better)
Translates to: NPETEVPTGNSTYSRNGALPCPN*TPTFAC
Trigger: ACATGCAAATGTGGGGGTCCAGTTGGGACAAGGCAG...TGCTCCATTTCTGCTGTACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CCA 90 bp AATCCTGAGACTGAGGTGCCAACAGGAAACAGCACGTACAGCAGAAATGGAGCAGACAGATGGCTTAGCTaGCTGCTCTTGCAAGAGGAC +
Preference number: 2 (lower is better)
Translates to: NPETEVPTGNSTYSRNGADRWLS*LLLQED
Trigger: GTCCTCTTGCAAGAGCAGCCAGCTAAGCCATCTGTC...TGCTCCATTTCTGCTGTACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 90 bp AGGGCATCTGACTTCACCTGCCTTGTCCCAACTGGACCCCCACATTaGCATGTTCTTGTACAGTGTGGATCTCTAACGACAGTGAAAGCA +
Preference number: 2 (lower is better)
Translates to: RASDFTCLVPTGPPH*HVLVQCGSLTTVKA
Trigger: TGCTTTCACTGTCGTTAGAGATCCACACTGTACAAGAACATGCAAATGTGGGGGTCCAGTTGGGACAAGGCAGGTGAAGTCAGATGCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 90 bp GTGCCTGCTGCTTTGGTCTGCCCAGGCGGATGCCTCACAGCCTGCTaGAACATTTGTTGGAAGGGTTGTTTTTGTTTTTGTGAGGTTTTT +
Preference number: 2 (lower is better)
Translates to: VPAALVCPGGCLTAC*NICWKGCFCFCEVF
Trigger: AAAAACCTCACAAAAACAAAAACAACCCTTCCAACAAATGTTCAAGCAGGCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGGCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR TCA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTTTTCTCCCCTCTGAGTaGTCCTGCCAGGTGCCACAG +
Preference number: 2 (lower is better)
Translates to: EQGLYFLKAECGRLYFNAFLPSE*SCQVPQ
Trigger: CTGTGGCACCTGGCAGGATCACTCAGAGGGGAGAAA...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CCA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTCCAGAGGACAACCCTTaGGAGTTGCTGTCCCCTGTC +
Preference number: 2 (lower is better)
Translates to: EQGLYFLKAECGRLYFNAPEDNP*ELLSPV
Trigger: GACAGGGGACAGCAACTCCCAAGGGTTGTCCTCTGG...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 90 bp TTAAAACCTTTCAAGCATACTTATTTGTGTGTGCACTGGCATCTGTaGAGTGTGGAGACCAGAGGACAACCCTTGGGAGTTGCTGTCCCC +
Preference number: 2 (lower is better)
Translates to: LKPFKHTYLCVHWHL*SVETRGQPLGVAVP
Trigger: GGGGACAGCAACTCCCAAGGGTTGTCCTCTGGTCTCCACACTCAACAGATGCCAGTGCACACACAAATAAGTATGCTTGAAAGGTTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 90 bp TATGGCACATGTGTACCTGGTGCCCATGGAGGTCAGAAGATGGCATaGGAAGATTCCCTGAAACTGGAGTTAGAGATGGCTGGTTATAAG +
Preference number: 2 (lower is better)
Translates to: YGTCVPGAHGGQKMA*EDSLKLELEMAGYK
Trigger: CTTATAACCAGCCATCTCTAACTCCAGTTTCAGGGAATCTTCCAATGCCATCTTCTGACCTCCATGGGCACCAGGTACACATGTGCCATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR TCA 90 bp CCATTTACTGAAGGAAATCCACCAAACATTAAAGACAGAGCAAACAACAGCAGATGCTACGCTTCCTGCTaGGCCATTGTGCTGGCCCCA +
Preference number: 2 (lower is better)
Translates to: PFTEGNPPNIKDRANNSRCYASC*AIVLAP
Trigger: TGGGGCCAGCACAATGGCTCAGCAGGAAGCGTAGCA...TCTGCTGTTGTTTGCTCTGTCTTTAATGTTTGGTGGATTTCCTTCAGTAAATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 90 bp AAGGTAAATAACATTTTCCACAGAGGGCATCTGACTTCACCTGCCTaGTCCCAACTGGACCCCCACATTTGCATGTTCTTGTACAGTGTG +
Preference number: 2 (lower is better)
Translates to: KVNNIFHRGHLTSPA*SQLDPHICMFLYSV
Trigger: CACACTGTACAAGAACATGCAAATGTGGGGGTCCAGTTGGGACAAGGCAGGTGAAGTCAGATGCCCTCTGTGGAAAATGTTATTTACCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR TCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACTGCACTGGCATCTGTTaGGTGTGGAGACCAGAGGAC +
Preference number: 2 (lower is better)
Translates to: IRLPRKQKNELLPFALLYCTGIC*VWRPED
Trigger: GTCCTCTGGTCTCCACACTCAACAGATGCCAGTGCA...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR GCA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTACTGACAAGCTAGCTTaGCTTTGTGCAGCTGAGCCC +
Preference number: 2 (lower is better)
Translates to: EQGLYFLKAECGRLYFNATDKLA*LCAAEP
Trigger: GGGCTCAGCTGCACAAAGGCAAGCTAGCTTGTCAGT...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR TCA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTGCCTCACAGCCTGCTTaGACATTTGTTGGAAGGGTT +
Preference number: 2 (lower is better)
Translates to: EQGLYFLKAECGRLYFNAASQPA*TFVGRV
Trigger: AACCCTTCCAACAAATGTTCAAGCAGGCTGTGAGGC...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR GCA 90 bp CCATTTACTGAAGGAAATCCACCAAACATTAAAGACAGAGCAAACAACAGCAGAACAACCCTTGGGAGTTaGTGTCCCCTGTCACCTAGG +
Preference number: 2 (lower is better)
Translates to: PFTEGNPPNIKDRANNSRTTLGS*CPLSPR
Trigger: CCTAGGTGACAGGGGACAGCAACTCCCAAGGGTTGT...TCTGCTGTTGTTTGCTCTGTCTTTAATGTTTGGTGGATTTCCTTCAGTAAATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR GCA 90 bp AATCCTGAGACTGAGGTGCCAACAGGAAACAGCACGTACAGCAGAAATGGAGCAAGAAACTTAGGCAAGTaGCACATTCCCAAATTAGAC +
Preference number: 2 (lower is better)
Translates to: NPETEVPTGNSTYSRNGARNLGK*HIPKLD
Trigger: GTCTAATTTGGGAATGTGGCACTTGCCTAAGTTTCT...TGCTCCATTTCTGCTGTACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR GCA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTATCCTGAGACTGAGGTaGCAACAGGAAACAGCACGT +
Preference number: 2 (lower is better)
Translates to: EQGLYFLKAECGRLYFNAILRLR*QQETAR
Trigger: ACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGAT...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR GCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACCTCTGGCAGTCATCATaGGTGAAACAAGCGCCAGTG +
Preference number: 2 (lower is better)
Translates to: IRLPRKQKNELLPFALLYLWQSS*VKQAPV
Trigger: CACTGGCGCTTGTTTCACGCATGATGACTGCCAGAG...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACTGGCACATGTGTACCTaGTGCCCATGGAGGTCAGAA +
Preference number: 2 (lower is better)
Translates to: IRLPRKQKNELLPFALLYWHMCT*CPWRSE
Trigger: TTCTGACCTCCATGGGCACCAGGTACACATGTGCCA...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CCA 90 bp GTAAAGGACAAAGTAACCAAAGATAGGAGAGAGAGGAATCCTCATGAGAAACACTGGCTGGACATGGCCTaGGTAGGATCTTCTTGTGCT +
Preference number: 2 (lower is better)
Translates to: VKDKVTKDRRERNPHEKHWLDMA*VGSSCA
Trigger: AGCACAAGAAGATCCTACCCAGGCCATGTCCAGCCA...GTGTTTCTCATGAGGATTCCTCTCTCTCCTATCTTTGGTTACTTTGTCCTTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211683.2
3UTR-3UTR GCA 90 bp GTAAAGGACAAAGTAACCAAAGATAGGAGAGAGAGGAATCCTCATGAGAAACACAAGACCTTTCTACCTTaGTGTGGCTGGCTGGACATG +
Preference number: 2 (lower is better)
Translates to: VKDKVTKDRRERNPHEKHKTFLP*CGWLDM
Trigger: CATGTCCAGCCAGCCACAGCAAGGTAGAAAGGTCTT...GTGTTTCTCATGAGGATTCCTCTCTCTCCTATCTTTGGTTACTTTGTCCTTTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211683.2
3UTR-3UTR CCA 90 bp AATCCTGAGACTGAGGTGCCAACAGGAAACAGCACGTACAGCAGAAATGGAGCATGCATGGCTAGAATCTaGTTCTTAGCTACTAAGATA +
Preference number: 2 (lower is better)
Translates to: NPETEVPTGNSTYSRNGACMARI*FLATKI
Trigger: TATCTTAGTAGCTAAGAACCAGATTCTAGCCATGCA...TGCTCCATTTCTGCTGTACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CCA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTGACACAAGTTCTACATaGGGCAGCTATGTGACTCCA +
Preference number: 2 (lower is better)
Translates to: EQGLYFLKAECGRLYFNADTSST*GSYVTP
Trigger: TGGAGTCACATAGCTGCCCCATGTAGAACTTGTGTC...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR TCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACCACAGTTTTCTGCACTaGAGGAATGGCCTACATCCA +
Preference number: 2 (lower is better)
Translates to: IRLPRKQKNELLPFALLYHSFLH*RNGLHP
Trigger: TGGATGTAGGCCATTCCTTCAGTGCAGAAAACTGTG...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR GCA 90 bp TTAATCCCTTTAGCAACTTCTAGTGAGCTGACCTGTATTTTCTTTCCTTTTCTGATCTCCTGTGCCTGCTaGTCTCTGTCCCACTGTAGT +
Preference number: 2 (lower is better)
Translates to: LIPLATSSELTCIFFPFLISCAC*SLSHCS
Trigger: ACTACAGTGGGACAGAGAGCAGCAGGCACAGGAGAT...CAGAAAAGGAAAGAAAATACAGGTCAGCTCACTAGAAGTTGCTAAAGGGATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 90 bp CCTCTTGGGAGGCAGAGGCAGGAGAATAGTCTTGAGTCAAAGAAGTaGAGGAAGGTCTGGATAATATCCCTAGATTGTCTTAAAACAATA +
Preference number: 2 (lower is better)
Translates to: PLGRQRQENSLESKK*RKVWIISLDCLKTI
Trigger: TATTGTTTTAAGACAATCTAGGGATATTATCCAGACCTTCCTCAACTTCTTTGACTCAAGACTATTCTCCTGCCTCTGCCTCCCAAGAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR GCA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTCACCAATTTCACTTCTaGCAGCAAACAATACAGCAG +
Preference number: 2 (lower is better)
Translates to: EQGLYFLKAECGRLYFNAHQFHF*QQTIQQ
Trigger: CTGCTGTATTGTTTGCTGGCAGAAGTGAAATTGGTG...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR GCA 90 bp TTAATCCCTTTAGCAACTTCTAGTGAGCTGACCTGTATTTTCTTTCCTTTTCTGGGGATAAACAACCTATaGAGGAGAGGGTGGGAGATA +
Preference number: 2 (lower is better)
Translates to: LIPLATSSELTCIFFPFLGINNL*RRGWEI
Trigger: TATCTCCCACCCTCTCCTGCATAGGTTGTTTATCCC...CAGAAAAGGAAAGAAAATACAGGTCAGCTCACTAGAAGTTGCTAAAGGGATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CCA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTAAAATCCCAAATCCTTaGAACTGGACAGATGGCTTA +
Preference number: 2 (lower is better)
Translates to: EQGLYFLKAECGRLYFNAKIPNP*NWTDGL
Trigger: TAAGCCATCTGTCCAGTTCCAAGGATTTGGGATTTT...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACCTCAGTACTACTGACTaGTACTACTTCCTCAGTACT +
Preference number: 2 (lower is better)
Translates to: IRLPRKQKNELLPFALLYLSTTD*YYFLST
Trigger: AGTACTGAGGAAGTAGTACCAGTCAGTAGTACTGAG...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 90 bp ATTTGCTCTTCTGTACTGAGTTACAGTAACGACCCCGTGACTTGTTaGGAAATTGACAATAATGTTCTGATTCTGCTGCCTGATCATCAA +
Preference number: 2 (lower is better)
Translates to: ICSSVLSYSNDPVTC*EIDNNVLILLPDHQ
Trigger: TTGATGATCAGGCAGCAGAATCAGAACATTATTGTCAATTTCCAAACAAGTCACGGGGTCGTTACTGTAACTCAGTACAGAAGAGCAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR TCA 90 bp CCATTTACTGAAGGAAATCCACCAAACATTAAAGACAGAGCAAACAACAGCAGATTCCTTCTGAAAGCTTaGGGCCTTTCCAAAACATCT +
Preference number: 2 (lower is better)
Translates to: PFTEGNPPNIKDRANNSRFLLKA*GLSKTS
Trigger: AGATGTTTTGGAAAGGCCTCAAGCTTTCAGAAGGAA...TCTGCTGTTGTTTGCTCTGTCTTTAATGTTTGGTGGATTTCCTTCAGTAAATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR TCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACAGACGTCCCTTAGTTTaGTTTGAAAACGTTCAGCAT +
Preference number: 2 (lower is better)
Translates to: IRLPRKQKNELLPFALLYRRPLV*FENVQH
Trigger: ATGCTGAACGTTTTCAAATCAAACTAAGGGACGTCT...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR GCA 90 bp TTAATCCCTTTAGCAACTTCTAGTGAGCTGACCTGTATTTTCTTTCCTTTTCTGGTACTCCTGCACTTTTaGTTCAGTTTTGAGACAGGC +
Preference number: 2 (lower is better)
Translates to: LIPLATSSELTCIFFPFLVLLHF*FSFETG
Trigger: GCCTGTCTCAAAACTGAAGCAAAAGTGCAGGAGTAC...CAGAAAAGGAAAGAAAATACAGGTCAGCTCACTAGAAGTTGCTAAAGGGATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACACAAACCCCAAAAGCTaGCTTCACAGCATTGTTATA +
Preference number: 2 (lower is better)
Translates to: IRLPRKQKNELLPFALLYTNPKS*LHSIVI
Trigger: TATAACAATGCTGTGAAGCCAGCTTTTGGGGTTTGT...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR TCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACAAGGGACAGCTACTATaGTACTGTTTGAATACTTCT +
Preference number: 2 (lower is better)
Translates to: IRLPRKQKNELLPFALLYKGQLL*YCLNTS
Trigger: AGAAGTATTCAAACAGTATCATAGTAGCTGTCCCTT...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR TCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACACTACCAGTACAAGATaGAACCTTTGCAAGTTAAAG +
Preference number: 2 (lower is better)
Translates to: IRLPRKQKNELLPFALLYTTSTR*NLCKLK
Trigger: CTTTAACTTGCAAAGGTTTCATCTTGTACTGGTAGT...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CCA 90 bp CCATTTACTGAAGGAAATCCACCAAACATTAAAGACAGAGCAAACAACAGCAGACAAAGCCCACACAAATaGGGAAGAAGACATTTTCAT +
Preference number: 2 (lower is better)
Translates to: PFTEGNPPNIKDRANNSRQSPHK*GRRHFH
Trigger: ATGAAAATGTCTTCTTCCCCATTTGTGTGGGCTTTG...TCTGCTGTTGTTTGCTCTGTCTTTAATGTTTGGTGGATTTCCTTCAGTAAATGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR TCA 90 bp TTAATCCCTTTAGCAACTTCTAGTGAGCTGACCTGTATTTTCTTTCCTTTTCTGATCTCAGATATTCTGTaGGCTAAAGGTAGAGTGAGA +
Preference number: 2 (lower is better)
Translates to: LIPLATSSELTCIFFPFLISDIL*AKGRVR
Trigger: TCTCACTCTACCTTTAGCTCACAGAATATCTGAGAT...CAGAAAAGGAAAGAAAATACAGGTCAGCTCACTAGAAGTTGCTAAAGGGATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR GCA 90 bp TTAATCCCTTTAGCAACTTCTAGTGAGCTGACCTGTATTTTCTTTCCTTTTCTGAATGAGTGTTTTGCCTaGCTGCATGTATGTCTGTAT +
Preference number: 2 (lower is better)
Translates to: LIPLATSSELTCIFFPFLNECFA*LHVCLY
Trigger: ATACAGACATACATGCAGGCAGGCAAAACACTCATT...CAGAAAAGGAAAGAAAATACAGGTCAGCTCACTAGAAGTTGCTAAAGGGATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 72 bp GTTGAGTGTGGAGACCAGAGGACAACCCTTGGGAGTTaGTGTCCCCTGTCACCTAGGCCCCAGGAAGTGAGC +
Preference number: 3 (lower is better)
Translates to: VECGDQRTTLGS*CPLSPRPQEVS
Trigger: GCTCACTTCCTGGGGCCTAGGTGACAGGGGACAGCAACTCCCAAGGGTTGTCCTCTGGTCTCCACACTCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 72 bp TGTCCCACTGTAGTGCTCTCCACTATTTCCTGTGCCTaGTGCTTTGGTCTGCCCAGGCGGATGCCTCACAGC +
Preference number: 3 (lower is better)
Translates to: CPTVVLSTISCA*CFGLPRRMPHS
Trigger: GCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGGCACAGGAAATAGTGGAGAGCACTACAGTGGGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp GCTCTCGCAGTGAGTCTGACCAGACATCTGCGGGTATaGGCAGTGCCCTCTGCATGCCTGGGGATTGTCTTT +
Preference number: 3 (lower is better)
Translates to: ALAVSLTRHLRV*AVPSACLGIVF
Trigger: AAAGACAATCCCCAGGCATGCAGAGGGCACTGCCCATACCCGCAGATGTCTGGTCAGACTCACTGCGAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR TCA 72 bp GGGGAGGGCAGGGTGTGCTTGCCAGCCGACAGACTTTaGTTGATTGACTCTGGACTGGAGCCAGGTAGTCTT +
Preference number: 3 (lower is better)
Translates to: GEGRVCLPADRL*LIDSGLEPGSL
Trigger: AAGACTACCTGGCTCCAGTCCAGAGTCAATCAATCAAAGTCTGTCGGCTGGCAAGCACACCCTGCCCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 72 bp TCTCTGTCCCACTGTAGTGCTCTCCACTATTTCCTGTaGCTGCTGCTTTGGTCTGCCCAGGCGGATGCCTCA +
Preference number: 3 (lower is better)
Translates to: SLSHCSALHYFL*LLLWSAQADAS
Trigger: TGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGGCACAGGAAATAGTGGAGAGCACTACAGTGGGACAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR TCA 72 bp AGGGCAGGGTGTGCTTGCCAGCCGACAGACTTTGATTaGTTGACTCTGGACTGGAGCCAGGTAGTCTTGTGC +
Preference number: 3 (lower is better)
Translates to: RAGCACQPTDFD*LTLDWSQVVLC
Trigger: GCACAAGACTACCTGGCTCCAGTCCAGAGTCAATCAATCAAAGTCTGTCGGCTGGCAAGCACACCCTGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 72 bp TGCTCTCCACTATTTCCTGTGCCTGCTGCTTTGGTCTaGCCAGGCGGATGCCTCACAGCCTGCTTGAACATT +
Preference number: 3 (lower is better)
Translates to: CSPLFPVPAALV*PGGCLTACLNI
Trigger: AATGTTCAAGCAGGCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGGCACAGGAAATAGTGGAGAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 72 bp TCTGACCAGACATCTGCGGGTATGGGCAGTGCCCTCTaGATGCCTGGGGATTGTCTTTTACTCACTCGCTTG +
Preference number: 3 (lower is better)
Translates to: SDQTSAGMGSAL*MPGDCLLLTRL
Trigger: CAAGCGAGTGAGTAAAAGACAATCCCCAGGCATGCAGAGGGCACTGCCCATACCCGCAGATGTCTGGTCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp TGTCCTCATCCCTTGCTAATGCCAGGACAAGATCCATaGGGCAAGCACAGGAGGCTTACCACACACCACCAG +
Preference number: 3 (lower is better)
Translates to: CPHPLLMPGQDP*GKHRRLTTHHQ
Trigger: CTGGTGGTGTGTGGTAAGCCTCCTGTGCTTGCCCCATGGATCTTGTCCTGGCATTAGCAAGGGATGAGGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR TCA 72 bp CAGATGCTGGTGACAGGTCCTCCCTACCTGACACAGTaGCAGTGTCCTCATCCCTTGCTAATGCCAGGACAA +
Preference number: 3 (lower is better)
Translates to: QMLVTGPPYLTQ*QCPHPLLMPGQ
Trigger: TTGTCCTGGCATTAGCAAGGGATGAGGACACTGTCACTGTGTCAGGTAGGGAGGACCTGTCACCAGCATCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 72 bp ACCAGACATCTGCGGGTATGGGCAGTGCCCTCTGCATaGCTGGGGATTGTCTTTTACTCACTCGCTTGTTCT +
Preference number: 3 (lower is better)
Translates to: TRHLRVWAVPSA*LGIVFYSLACS
Trigger: AGAACAAGCGAGTGAGTAAAAGACAATCCCCAGGCATGCAGAGGGCACTGCCCATACCCGCAGATGTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp GACATCTGCGGGTATGGGCAGTGCCCTCTGCATGCCTaGGGATTGTCTTTTACTCACTCGCTTGTTCTTCTC +
Preference number: 3 (lower is better)
Translates to: DICGYGQCPLHA*GLSFTHSLVLL
Trigger: GAGAAGAACAAGCGAGTGAGTAAAAGACAATCCCCAGGCATGCAGAGGGCACTGCCCATACCCGCAGATGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR TCA 72 bp AGCACCTGCAACTTCCCTGATCTCCACGGGAGAAACTaGAGTCCCCTAAATCCTGACCTAAGCCACACAGTG +
Preference number: 3 (lower is better)
Translates to: STCNFPDLHGRN*SPLNPDLSHTV
Trigger: CACTGTGTGGCTTAGGTCAGGATTTAGGGGACTTCAGTTTCTCCCGTGGAGATCAGGGAAGTTGCAGGTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 72 bp CTGGTGCCTGAGCCTGCTGCTGGGATTATGGGTGTGTaGCACCATCCTGGCTTTCTAAGTTTTAGTTCTGGA +
Preference number: 3 (lower is better)
Translates to: LVPEPAAGIMGV*HHPGFLSFSSG
Trigger: TCCAGAACTAAAACTTAGAAAGCCAGGATGGTGGCACACACCCATAATCCCAGCAGCAGGCTCAGGCACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp TCAACGCAGACGAGAAAGAGAAAGTGCGATCACGCCTaGGCAGGAAAGGCTTCACTAAGCTCAGTCTTAGCC +
Preference number: 3 (lower is better)
Translates to: STQTRKRKCDHA*AGKASLSSVLA
Trigger: GGCTAAGACTGAGCTTAGTGAAGCCTTTCCTGCCCAGGCGTGATCGCACTTTCTCTTTCTCGTCTGCGTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp ATTCCTAGTGGCAAGACCTTTCTACCTTGCTGTGGCTaGCTGGACATGGCCTGGGTAGGATCTTCTTGTGCT +
Preference number: 3 (lower is better)
Translates to: IPSGKTFLPCCG*LDMAWVGSSCA
Trigger: AGCACAAGAAGATCCTACCCAGGCCATGTCCAGCCAGCCACAGCAAGGTAGAAAGGTCTTGCCACTAGGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211683.2
3UTR CCA 72 bp CTGCCTGCATGTATGTCTGTATGGCACATGTGTACCTaGTGCCCATGGAGGTCAGAAGATGGCATTGGAAGA +
Preference number: 3 (lower is better)
Translates to: LPACMSVWHMCT*CPWRSEDGIGR
Trigger: TCTTCCAATGCCATCTTCTGACCTCCATGGGCACCAGGTACACATGTGCCATACAGACATACATGCAGGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp TGCACTGAAGGAATGGCCTACATCCATGCTGCCCACTaGCCACGCCTGAACACTGAACAACTGAGAAATGAT +
Preference number: 3 (lower is better)
Translates to: CTEGMAYIHAAH*PRLNTEQLRND
Trigger: ATCATTTCTCAGTTGTTCAGTGTTCAGGCGTGGCCAGTGGGCAGCATGGATGTAGGCCATTCCTTCAGTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CAA 90 bp AATCCTGAGACTGAGGTGCCAACAGGAAACAGCACGTACAGCAGAAATGGAGCACAGTGTCCTCATCCCTaGCTAATGCCAGGACAAGAT +
Preference number: 3 (lower is better)
Translates to: NPETEVPTGNSTYSRNGAQCPHP*LMPGQD
Trigger: ATCTTGTCCTGGCATTAGCAAGGGATGAGGACACTG...TGCTCCATTTCTGCTGTACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CAA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTCTGACTTCACCTGCCTaGTCCCAACTGGACCCCCAC +
Preference number: 3 (lower is better)
Translates to: EQGLYFLKAECGRLYFNALTSPA*SQLDPH
Trigger: GTGGGGGTCCAGTTGGGACAAGGCAGGTGAAGTCAG...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 72 bp CCTGCATGTATGTCTGTATGGCACATGTGTACCTGGTaGCCATGGAGGTCAGAAGATGGCATTGGAAGATTC +
Preference number: 3 (lower is better)
Translates to: PACMSVWHMCTW*PWRSEDGIGRF
Trigger: GAATCTTCCAATGCCATCTTCTGACCTCCATGGGCACCAGGTACACATGTGCCATACAGACATACATGCAGG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 72 bp CACACACTCACACATGCGCACACACACAGACACACATaGACACACACAGACACACACACATGTTCTCTCTCT +
Preference number: 3 (lower is better)
Translates to: HTLTHAHTHRHT*THTDTHTCSLS
Trigger: AGAGAGAGAACATGTGTGTGTGTCTGTGTGTGTGCATGTGTGTCTGTGTGTGTGCGCATGTGTGAGTGTGTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR TCA 72 bp TCAAGCATACTTATTTGTGTGTGCACTGGCATCTGTTaGGTGTGGAGACCAGAGGACAACCCTTGGGAGTTG +
Preference number: 3 (lower is better)
Translates to: SSILICVCTGIC*VWRPEDNPWEL
Trigger: CAACTCCCAAGGGTTGTCCTCTGGTCTCCACACTCAACAGATGCCAGTGCACACACAAATAAGTATGCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp TGTATGTCTGTATGGCACATGTGTACCTGGTGCCCATaGAGGTCAGAAGATGGCATTGGAAGATTCCCTGAA +
Preference number: 3 (lower is better)
Translates to: CMSVWHMCTWCP*RSEDGIGRFPE
Trigger: TTCAGGGAATCTTCCAATGCCATCTTCTGACCTCCATGGGCACCAGGTACACATGTGCCATACAGACATACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp AACTGGACCCCCACATTTGCATGTTCTTGTACAGTGTaGATCTCTAACGACAGTGAAAGCAGGACTCGAGGT +
Preference number: 3 (lower is better)
Translates to: NWTPTFACSCTV*ISNDSESRTRG
Trigger: ACCTCGAGTCCTGCTTTCACTGTCGTTAGAGATCCACACTGTACAAGAACATGCAAATGTGGGGGTCCAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp AATCCCAAATCCTTGGAACTGGACAGATGGCTTAGCTaGCTGCTCTTGCAAGAGGACACAAGTTCTACATGG +
Preference number: 3 (lower is better)
Translates to: NPKSLELDRWLS*LLLQEDTSSTW
Trigger: CCATGTAGAACTTGTGTCCTCTTGCAAGAGCAGCCAGCTAAGCCATCTGTCCAGTTCCAAGGATTTGGGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp AGCCTTTCAAGTGCTAGAATCACAGGCTATTACACATaGCAGGAGGTACAGACTTGGCCTAGAACCCACTCT +
Preference number: 3 (lower is better)
Translates to: SLSSARITGYYT*QEVQTWPRTHS
Trigger: AGAGTGGGTTCTAGGCCAAGTCTGTACCTCCTGCCATGTGTAATAGCCTGTGATTCTAGCACTTGAAAGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CAA 90 bp AATCCTGAGACTGAGGTGCCAACAGGAAACAGCACGTACAGCAGAAATGGAGCACTTCCTTCTGAAAGCTaGAGGCCTTTCCAAAACATC +
Preference number: 3 (lower is better)
Translates to: NPETEVPTGNSTYSRNGALPSES*RPFQNI
Trigger: GATGTTTTGGAAAGGCCTCAAGCTTTCAGAAGGAAG...TGCTCCATTTCTGCTGTACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR TCA 72 bp ACTTCAAACCTTAGAATACGTTTAATTTCTCCCCTCTaGGTGATCCTGCCAGGTGCCACAGGTCTGACTAGC +
Preference number: 3 (lower is better)
Translates to: TSNLRIRLISPL*VILPGATGLTS
Trigger: GCTAGTCAGACCTGTGGCACCTGGCAGGATCACTCAGAGGGGAGAAATTAAACGTATTCTAAGGTTTGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 72 bp TGCCTCTGTCTCCTAAGTGCTGAAACAAGGTCTCATTaGATAGCCCAGGCTAGCTTCCAACTTGCATTTTTC +
Preference number: 3 (lower is better)
Translates to: CLCLLSAETRSH*IAQASFQLAFF
Trigger: GAAAAATGCAAGTTGGAAGCTAGCCTGGGCTATGCAATGAGACCTTGTTTCAGCACTTAGGAGACAGAGGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 72 bp ATGATTAGAGTATCAAGTGGAGATGGAATTTCACCATaGAGCCCTGAATGGCCTCGCCTTGTAGAAAGCCTC +
Preference number: 3 (lower is better)
Translates to: MIRVSSGDGISP*SPEWPRLVESL
Trigger: GAGGCTTTCTACAAGGCGAGGCCATTCAGGGCTGCATGGTGAAATTCCATCTCCACTTGATACTCTAATCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 72 bp TTTTTAAAAATTCCTAGTGGCAAGACCTTTCTACCTTaGTGTGGCTGGCTGGACATGGCCTGGGTAGGATCT +
Preference number: 3 (lower is better)
Translates to: FLKIPSGKTFLP*CGWLDMAWVGS
Trigger: AGATCCTACCCAGGCCATGTCCAGCCAGCCACAGCAAGGTAGAAAGGTCTTGCCACTAGGAATTTTTAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000211683.2
3UTR CCA 72 bp GAGGATAAAAATCCCAAATCCTTGGAACTGGACAGATaGCTTAGCTGGCTGCTCTTGCAAGAGGACACAAGT +
Preference number: 3 (lower is better)
Translates to: EDKNPKSLELDR*LSWLLLQEDTS
Trigger: ACTTGTGTCCTCTTGCAAGAGCAGCCAGCTAAGCCATCTGTCCAGTTCCAAGGATTTGGGATTTTTATCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp TCATTCATTCACCGCTCCTTCCTCAGTACTACTGACTaGTACTACTTCCTCGGTACTACTGACTGGTACTAC +
Preference number: 3 (lower is better)
Translates to: SFIHRSFLSTTD*YYFLGTTDWYY
Trigger: GTAGTACCAGTCAGTAGTACCGAGGAAGTAGTACCAGTCAGTAGTACTGAGGAAGGAGCGGTGAATGAATGA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CAA 90 bp TTAATCCCTTTAGCAACTTCTAGTGAGCTGACCTGTATTTTCTTTCCTTTTCTGCTTCCTGCTGAGCCATaGTGCTGGCCCCAGTTTTTG +
Preference number: 3 (lower is better)
Translates to: LIPLATSSELTCIFFPFLLPAEP*CWPQFL
Trigger: CAAAAACTGGGGCCAGCACAATGGCTCAGCAGGAAG...CAGAAAAGGAAAGAAAATACAGGTCAGCTCACTAGAAGTTGCTAAAGGGATTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR TCA 72 bp TACGATGATGAGGAATATATCCTCAGAACTCTCGACTaGATTGTCAGCCAGAGGGGGAATCTCTTACAGAAC +
Preference number: 3 (lower is better)
Translates to: YDDEEYILRTLD*IVSQRGNLLQN
Trigger: GTTCTGTAAGAGATTCCCCCTCTGGCTGACAATTCAGTCGAGAGTTCTGAGGATATATTCCTCATCATCGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR TCA 72 bp GGGAAATACTTGAACACAGTTTTGTTAAATCTGAGTTaGGGCGAGGAATGCAGAGCCCAAAGTGGACATCGT +
Preference number: 3 (lower is better)
Translates to: GKYLNTVLLNLS*GEECRAQSGHR
Trigger: ACGATGTCCACTTTGGGCTCTGCATTCCTCGCCTCAACTCAGATTTAACAAAACTGTGTTCAAGTATTTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp TTAAAACCTTTCAAGCATACTTATTTGTGTGTGCACTaGCATCTGTTGAGTGTGGAGACCAGAGGACAACCC +
Preference number: 3 (lower is better)
Translates to: LKPFKHTYLCVH*HLLSVETRGQP
Trigger: GGGTTGTCCTCTGGTCTCCACACTCAACAGATGCCAGTGCACACACAAATAAGTATGCTTGAAAGGTTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR TCA 72 bp TTTCTGCAATACCTGGCACCTCTACCGATTTCCTTTTaGAATCACCTTTCCTCCGTTTTTAGCCGATCTGAT +
Preference number: 3 (lower is better)
Translates to: FLQYLAPLPISF*NHLSSVFSRSD
Trigger: ATCAGATCGGCTAAAAACGGAGGAAAGGTGATTTCAAAAGGAAATCGGTAGAGGTGCCAGGTATTGCAGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp TATTATATGAGGATAAAAATCCCAAATCCTTGGAACTaGACAGATGGCTTAGCTGGCTGCTCTTGCAAGAGG +
Preference number: 3 (lower is better)
Translates to: YYMRIKIPNPWN*TDGLAGCSCKR
Trigger: CCTCTTGCAAGAGCAGCCAGCTAAGCCATCTGTCCAGTTCCAAGGATTTGGGATTTTTATCCTCATATAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CAA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTATAAGAATGAGTGTTTaGCCTGCCTGCATGTATGTC +
Preference number: 3 (lower is better)
Translates to: EQGLYFLKAECGRLYFNAIRMSV*PACMYV
Trigger: GACATACATGCAGGCAGGCAAAACACTCATTCTTAT...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CAA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACTGTTTCCTTCTCTCTTaGGGATTTGCAATAGTGTGT +
Preference number: 3 (lower is better)
Translates to: IRLPRKQKNELLPFALLYCFLLS*GFAIVC
Trigger: ACACACTATTGCAAATCCCAAAGAGAGAAGGAAACA...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CAA 90 bp TTAATCCCTTTAGCAACTTCTAGTGAGCTGACCTGTATTTTCTTTCCTTTTCTGTTCAAGCATACTTATTaGTGTGTGCACTGGCATCTG +
Preference number: 3 (lower is better)
Translates to: LIPLATSSELTCIFFPFLFKHTY*CVHWHL
Trigger: CAGATGCCAGTGCACACACAAATAAGTATGCTTGAA...CAGAAAAGGAAAGAAAATACAGGTCAGCTCACTAGAAGTTGCTAAAGGGATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CAA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACATTGTGTTAGATGCATaGAATGCATTGAGAATAGCC +
Preference number: 3 (lower is better)
Translates to: IRLPRKQKNELLPFALLYIVLDA*NALRIA
Trigger: GGCTATTCTCAATGCATTCAATGCATCTAACACAAT...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CAA 90 bp TTAATCCCTTTAGCAACTTCTAGTGAGCTGACCTGTATTTTCTTTCCTTTTCTGCTTGAGTCAAAGAAGTaGAGGAAGGTCTGGATAATA +
Preference number: 3 (lower is better)
Translates to: LIPLATSSELTCIFFPFLLESKK*RKVWII
Trigger: TATTATCCAGACCTTCCTCAACTTCTTTGACTCAAG...CAGAAAAGGAAAGAAAATACAGGTCAGCTCACTAGAAGTTGCTAAAGGGATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 72 bp TTTATAGACTTGTTTTATAAGAATGAGTGTTTTGCCTaGCTGCATGTATGTCTGTATGGCACATGTGTACCT +
Preference number: 3 (lower is better)
Translates to: FIDLFYKNECFA*LHVCLYGTCVP
Trigger: AGGTACACATGTGCCATACAGACATACATGCAGGCAGGCAAAACACTCATTCTTATAAAACAAGTCTATAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR GCA 72 bp ACGTATATTAGGCAAGTATTATTATACCAGCTGAGCTaGATCCTAGCCCTCACAAATATTTTCACTTTTACC +
Preference number: 3 (lower is better)
Translates to: TYIRQVLLYQLS*ILALTNIFTFT
Trigger: GGTAAAAGTGAAAATATTTGTGAGGGCTAGGATGCAGCTCAGCTGGTATAATAATACTTGCCTAATATACGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp AACAAATCTCAGTATAGCAACTATTTCTGCAATACCTaGCACCTCTACCGATTTCCTTTTGAAATCACCTTT +
Preference number: 3 (lower is better)
Translates to: NKSQYSNYFCNT*HLYRFPFEITF
Trigger: AAAGGTGATTTCAAAAGGAAATCGGTAGAGGTGCCAGGTATTGCAGAAATAGTTGCTATACTGAGATTTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR-3UTR CAA 90 bp TTAATCCCTTTAGCAACTTCTAGTGAGCTGACCTGTATTTTCTTTCCTTTTCTGACTGCTACTTTCATGTaGCAAATGGAAAAATTCTGG +
Preference number: 3 (lower is better)
Translates to: LIPLATSSELTCIFFPFLTATFM*QMEKFW
Trigger: CCAGAATTTTTCCATTTGCAACATGAAAGTAGCAGT...CAGAAAAGGAAAGAAAATACAGGTCAGCTCACTAGAAGTTGCTAAAGGGATTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp TACCTTTTATCCCACTATCCACTCTCCTCTCTAAAATaGATTTGCCTTAATAGCCATCGATTACTTTCTTTT +
Preference number: 3 (lower is better)
Translates to: YLLSHYPLSSLK*ICLNSHRLLSF
Trigger: AAAAGAAAGTAATCGATGGCTATTAAGGCAAATCCATTTTAGAGAGGAGAGTGGATAGTGGGATAAAAGGTA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp GGGACAGCTACTATGATACTGTTTGAATACTTCTCTTaGCCTAAATATTCGTTAATTAGGCTACCTTTTATC +
Preference number: 3 (lower is better)
Translates to: GTATMILFEYFS*PKYSLIRLPFI
Trigger: GATAAAAGGTAGCCTAATTAACGAATATTTAGGCCAAGAGAAGTATTCAAACAGTATCATAGTAGCTGTCCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp AGGCACGATAAAGAATATAAATTGTGTATCAATTATTaGCAGAAAACCCGATTCTTTACAAAGCCCACACAA +
Preference number: 3 (lower is better)
Translates to: RHDKEYKLCINY*QKTRFFTKPTQ
Trigger: TTGTGTGGGCTTTGTAAAGAATCGGGTTTTCTGCCAATAATTGATACACAATTTATATTCTTTATCGTGCCT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CCA 72 bp GAGAATAGTCTTGAGTCAAAGAAGTTGAGGAAGGTCTaGATAATATCCCTAGATTGTCTTAAAACAATAACA +
Preference number: 3 (lower is better)
Translates to: ENSLESKKLRKV*IISLDCLKTIT
Trigger: TGTTATTGTTTTAAGACAATCTAGGGATATTATCCAGACCTTCCTCAACTTCTTTGACTCAAGACTATTCTC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp TGCTGTCCCCTGTCACCTAGGCCCCAGGAAGTGAGCCCAGGCAAGTGCTACGCTCCGAATGCTCCCCAATaGGGTTCACGTCAGGAAGGG +
Preference number: 4 (lower is better)
Translates to: CCPLSPRPQEVSPGKCYAPNAPQ*GSRQEG
Trigger: CCCTTCCTGACGTGAACCTCATTGGGGAGCATTCGG...AGCGTAGCACTTGCCTGGGCTCACTTCCTGGGGCCTAGGTGACAGGGGACAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp TGCTGTCCCCTGTCACCTAGGCCCCAGGAAGTGAGCCCAGGCAAGTGCTACGCTCATCCTTCCGAGCTCTaGTGCATCCGAATGCTCCCC +
Preference number: 4 (lower is better)
Translates to: CCPLSPRPQEVSPGKCYAHPSEL*CIRMLP
Trigger: GGGGAGCATTCGGATGCAGCAGAGCTCGGAAGGATG...AGCGTAGCACTTGCCTGGGCTCACTTCCTGGGGCCTAGGTGACAGGGGACAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CCA 90 bp TGCTGTCCCCTGTCACCTAGGCCCCAGGAAGTGAGCCCAGGCAAGTGCTACGCTCTACCTTGCTGTGGCTaGCTGGACATGGCCTGGGTA +
Preference number: 4 (lower is better)
Translates to: CCPLSPRPQEVSPGKCYALPCCG*LDMAWV
Trigger: TACCCAGGCCATGTCCAGCCAGCCACAGCAAGGTAG...AGCGTAGCACTTGCCTGGGCTCACTTCCTGGGGCCTAGGTGACAGGGGACAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 72 bp TGGCATCTGTTGAGTGTGGAGACCAGAGGACAACCCTaGGGAGTTGCTGTCCCCTGTCACCTAGGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: WHLLSVETRGQP*GVAVPCHLGPR
Trigger: CCTGGGGCCTAGGTGACAGGGGACAGCAACTCCCAAGGGTTGTCCTCTGGTCTCCACACTCAACAGATGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp CCTGCTGCTTTGGTCTGCCCAGGCGGATGCCTCACAGCCTGCTTGAACATTTGTCAGCACAGCCTAGAATaGGCTGCAGCATCCTTCCGA +
Preference number: 4 (lower is better)
Translates to: PAALVCPGGCLTACLNICQHSLE*AAASFR
Trigger: TCGGAAGGATGCTGCAGCTCATTCTAGGCTGTGCTG...ACAAATGTTCAAGCAGGCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp TGCTGTCCCCTGTCACCTAGGCCCCAGGAAGTGAGCCCAGGCAAGTGCTACGCTTCATCCTTTAGAGACTaGGCTTCGTCTGCCAAAGTG +
Preference number: 4 (lower is better)
Translates to: CCPLSPRPQEVSPGKCYASSFRD*ASSAKV
Trigger: CACTTTGGCAGACGAAGCTCAGTCTCTAAAGGATGA...AGCGTAGCACTTGCCTGGGCTCACTTCCTGGGGCCTAGGTGACAGGGGACAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp TGCTGTCCCCTGTCACCTAGGCCCCAGGAAGTGAGCCCAGGCAAGTGCTACGCTACTCTTCCTCCAGACTaGCAGTGTTCTGCATGTACA +
Preference number: 4 (lower is better)
Translates to: CCPLSPRPQEVSPGKCYATLPPD*QCSACT
Trigger: TGTACATGCAGAACACTGTCAGTCTGGAGGAAGAGT...AGCGTAGCACTTGCCTGGGCTCACTTCCTGGGGCCTAGGTGACAGGGGACAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp CCTGCTGCTTTGGTCTGCCCAGGCGGATGCCTCACAGCCTGCTTGAACATTTGTTCTGCTGCATCCGAATaGTCCCCAATGAGGTTCACG +
Preference number: 4 (lower is better)
Translates to: PAALVCPGGCLTACLNICSAASE*SPMRFT
Trigger: CGTGAACCTCATTGGGGAGCATTCGGATGCAGCAGA...ACAAATGTTCAAGCAGGCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp CCTGCTGCTTTGGTCTGCCCAGGCGGATGCCTCACAGCCTGCTTGAACATTTGTGAAGAACCTGGGACATaGCAACGCCGTTCGTTAAGT +
Preference number: 4 (lower is better)
Translates to: PAALVCPGGCLTACLNICEEPGT*QRRSLS
Trigger: ACTTAACGAACGGCGTTGTCATGTCCCAGGTTCTTC...ACAAATGTTCAAGCAGGCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CCA 90 bp TGCTGTCCCCTGTCACCTAGGCCCCAGGAAGTGAGCCCAGGCAAGTGCTACGCTATGTCTTCTTCCTGCTaGGCTATTGGGATCTTCTAT +
Preference number: 4 (lower is better)
Translates to: CCPLSPRPQEVSPGKCYAMSSSC*AIGIFY
Trigger: ATAGAAGATCCCAATAGCCCAGCAGGAAGAAGACAT...AGCGTAGCACTTGCCTGGGCTCACTTCCTGGGGCCTAGGTGACAGGGGACAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 72 bp GACTACACAAGGACTCACAGTGGTCCCCGAGGAGGCTaGCAAGCACAGGAAGAACATGGGCTCTTTCCAGTT +
Preference number: 4 (lower is better)
Translates to: DYTRTHSGPRGG*QAQEEHGLFPV
Trigger: AACTGGAAAGAGCCCATGTTCTTCCTGTGCTTGCAAGCCTCCTCGGGGACCACTGTGAGTCCTTGTGTAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp ACGATTCATGCGTATAATCCAAGAAGACCATGTGTTCATGGCAGCCTGGGTTACGTGAGCTGCCCCTCCTaGGCCTGCACACAACGCAAC +
Preference number: 4 (lower is better)
Translates to: TIHAYNPRRPCVHGSLGYVSCPS*ACTQRN
Trigger: GTTGCGTTGTGTGCAGGCTCAGGAGGGGCAGCTCAC...GTAACCCAGGCTGCCATGAACACATGGTCTTCTTGGATTATACGCATGAATCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp AATCCTGAGACTGAGGTGCCAACAGGAAACAGCACGTACAGCAGAAATGGAGCATTAACCCTTGAGTGGTaGGCTGCCCCTCCTGAGCCT +
Preference number: 4 (lower is better)
Translates to: NPETEVPTGNSTYSRNGALTLEW*AAPPEP
Trigger: AGGCTCAGGAGGGGCAGCTCACCACTCAAGGGTTAA...TGCTCCATTTCTGCTGTACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CCA 90 bp CCTGCTGCTTTGGTCTGCCCAGGCGGATGCCTCACAGCCTGCTTGAACATTTGTCTGTCTGAAGATTCCTaGCTTCCCAGAGGCATTAAC +
Preference number: 4 (lower is better)
Translates to: PAALVCPGGCLTACLNICLSEDS*LPRGIN
Trigger: GTTAATGCCTCTGGGAAGCCAGGAATCTTCAGACAG...ACAAATGTTCAAGCAGGCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp TGCTGTCCCCTGTCACCTAGGCCCCAGGAAGTGAGCCCAGGCAAGTGCTACGCTTCAGATAATCTATTTTaGAGCTCTACAACTTGTCTC +
Preference number: 4 (lower is better)
Translates to: CCPLSPRPQEVSPGKCYASDNLF*SSTTCL
Trigger: GAGACAAGTTGTAGAGCTGCAAAATAGATTATCTGA...AGCGTAGCACTTGCCTGGGCTCACTTCCTGGGGCCTAGGTGACAGGGGACAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CCA 90 bp CCTGCTGCTTTGGTCTGCCCAGGCGGATGCCTCACAGCCTGCTTGAACATTTGTAAGAGCTTGAATTTCTaGTGCTGCTCCTTGATTCTG +
Preference number: 4 (lower is better)
Translates to: PAALVCPGGCLTACLNICKSLNF*CCSLIL
Trigger: CAGAATCAAGGAGCAGCACCAGAAATTCAAGCTCTT...ACAAATGTTCAAGCAGGCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CCA 90 bp AATCCTGAGACTGAGGTGCCAACAGGAAACAGCACGTACAGCAGAAATGGAGCATGGCTGGACATGGCCTaGGTAGGATCTTCTTGTGCT +
Preference number: 4 (lower is better)
Translates to: NPETEVPTGNSTYSRNGAWLDMA*VGSSCA
Trigger: AGCACAAGAAGATCCTACCCAGGCCATGTCCAGCCA...TGCTCCATTTCTGCTGTACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 72 bp AACATTTTCCACAGAGGGCATCTGACTTCACCTGCCTaGTCCCAACTGGACCCCCACATTTGCATGTTCTTG +
Preference number: 4 (lower is better)
Translates to: NIFHRGHLTSPA*SQLDPHICMFL
Trigger: CAAGAACATGCAAATGTGGGGGTCCAGTTGGGACAAGGCAGGTGAAGTCAGATGCCCTCTGTGGAAAATGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 72 bp ACTACTTCCTCGGTACTACTGACTGGGCGTAGGGTCTaGATTATCCTAGGTAAAAGGCCTCACTTCCCATCC +
Preference number: 4 (lower is better)
Translates to: TTSSVLLTGRRV*IILGKRPHFPS
Trigger: GGATGGGAAGTGAGGCCTTTTACCTAGGATAATCAAGACCCTACGCCCAGTCAGTAGTACCGAGGAAGTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp AATCCTGAGACTGAGGTGCCAACAGGAAACAGCACGTACAGCAGAAATGGAGCAGTCATGACGACATGCTaGACAGATTCCTCCATCATC +
Preference number: 4 (lower is better)
Translates to: NPETEVPTGNSTYSRNGAVMTTC*TDSSII
Trigger: GATGATGGAGGAATCTGTTCAGCATGTCGTCATGAC...TGCTCCATTTCTGCTGTACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp CCTGCTGCTTTGGTCTGCCCAGGCGGATGCCTCACAGCCTGCTTGAACATTTGTATGGCTCTCTTTTTCTaGAATTCATTGTTGGCTTCA +
Preference number: 4 (lower is better)
Translates to: PAALVCPGGCLTACLNICMALFF*NSLLAS
Trigger: TGAAGCCAACAATGAATTGCAGAAAAAGAGAGCCAT...ACAAATGTTCAAGCAGGCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTTGCTGCAAGGCTGTCTaGAGATTCCTGGCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: EQGLYFLKAECGRLYFNACCKAV*RFLASQ
Trigger: CTGGGAAGCCAGGAATCTTCAGACAGCCTTGCAGCA...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTCGCGGTCTGGCACGGTaGATCCACATTAAAGGTCTG +
Preference number: 4 (lower is better)
Translates to: EQGLYFLKAECGRLYFNARGLAR*IHIKGL
Trigger: CAGACCTTTAATGTGGATGCACCGTGCCAGACCGCG...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CCA 90 bp ACGATTCATGCGTATAATCCAAGAAGACCATGTGTTCATGGCAGCCTGGGTTACCTTCGTCTGCCAAAGTaGTCAGCTCATCGTTCTGCT +
Preference number: 4 (lower is better)
Translates to: TIHAYNPRRPCVHGSLGYLRLPK*SAHRSA
Trigger: AGCAGAACGATGAGCTGACCACTTTGGCAGACGAAG...GTAACCCAGGCTGCCATGAACACATGGTCTTCTTGGATTATACGCATGAATCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CCA 90 bp GTAAAGGACAAAGTAACCAAAGATAGGAGAGAGAGGAATCCTCATGAGAAACACAAGTCCTCCGCGGTCTaGCACGGTGCATCCACATTA +
Preference number: 4 (lower is better)
Translates to: VKDKVTKDRRERNPHEKHKSSAV*HGASTL
Trigger: TAATGTGGATGCACCGTGCCAGACCGCGGAGGACTT...GTGTTTCTCATGAGGATTCCTCTCTCTCCTATCTTTGGTTACTTTGTCCTTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CCA 90 bp ACGATTCATGCGTATAATCCAAGAAGACCATGTGTTCATGGCAGCCTGGGTTACTCTTTCTCTAATGAGTaGAAGAGTCGGTCCCGTTCC +
Preference number: 4 (lower is better)
Translates to: TIHAYNPRRPCVHGSLGYSFSNE*KSRSRS
Trigger: GGAACGGGACCGACTCTTCCACTCATTAGAGAAAGA...GTAACCCAGGCTGCCATGAACACATGGTCTTCTTGGATTATACGCATGAATCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 72 bp TTCAAGCATACTTATTTGTGTGTGCACTGGCATCTGTaGAGTGTGGAGACCAGAGGACAACCCTTGGGAGTT +
Preference number: 4 (lower is better)
Translates to: FKHTYLCVHWHL*SVETRGQPLGV
Trigger: AACTCCCAAGGGTTGTCCTCTGGTCTCCACACTCAACAGATGCCAGTGCACACACAAATAAGTATGCTTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp AATCCTGAGACTGAGGTGCCAACAGGAAACAGCACGTACAGCAGAAATGGAGCAATCATCATAATGGCTTaGATGTACTCTTGCTTCTGC +
Preference number: 4 (lower is better)
Translates to: NPETEVPTGNSTYSRNGAIIIMA*MYSCFC
Trigger: GCAGAAGCAAGAGTACATTCAAGCCATTATGATGAT...TGCTCCATTTCTGCTGTACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp CCATTTACTGAAGGAAATCCACCAAACATTAAAGACAGAGCAAACAACAGCAGACCTTCCGAGCTCTGCTaGATCCGAATGCTCCCCAAT +
Preference number: 4 (lower is better)
Translates to: PFTEGNPPNIKDRANNSRPSELC*IRMLPN
Trigger: ATTGGGGAGCATTCGGATGCAGCAGAGCTCGGAAGG...TCTGCTGTTGTTTGCTCTGTCTTTAATGTTTGGTGGATTTCCTTCAGTAAATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp GTAAAGGACAAAGTAACCAAAGATAGGAGAGAGAGGAATCCTCATGAGAAACACCAGCCTAGAATGAGCTaGAGCATCCTTCCGAGCTCT +
Preference number: 4 (lower is better)
Translates to: VKDKVTKDRRERNPHEKHQPRMS*SILPSS
Trigger: AGAGCTCGGAAGGATGCTGCAGCTCATTCTAGGCTG...GTGTTTCTCATGAGGATTCCTCTCTCTCCTATCTTTGGTTACTTTGTCCTTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CCA 90 bp AATCCTGAGACTGAGGTGCCAACAGGAAACAGCACGTACAGCAGAAATGGAGCATCTGCAATTCATTGTTaGCTTCATGCAGCTTCTCTA +
Preference number: 4 (lower is better)
Translates to: NPETEVPTGNSTYSRNGASAIHC*LHAASL
Trigger: TAGAGAAGCTGCATGAAGCCAACAATGAATTGCAGA...TGCTCCATTTCTGCTGTACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp AATCCTGAGACTGAGGTGCCAACAGGAAACAGCACGTACAGCAGAAATGGAGCATCCTGCAAAGATTTTTaGAGTTCTTCTACTTGTGAC +
Preference number: 4 (lower is better)
Translates to: NPETEVPTGNSTYSRNGASCKDF*SSSTCD
Trigger: GTCACAAGTAGAAGAACTGCAAAAATCTTTGCAGGA...TGCTCCATTTCTGCTGTACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 72 bp AGGGAAATACTTGAACACAGTTTTGTTAAATCTGAGTaGAGGCGAGGAATGCAGAGCCCAAAGTGGACATCG +
Preference number: 4 (lower is better)
Translates to: REILEHSFVKSE*RRGMQSPKWTS
Trigger: CGATGTCCACTTTGGGCTCTGCATTCCTCGCCTCAACTCAGATTTAACAAAACTGTGTTCAAGTATTTCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTTGGCTGCTTCTAGTCTaGATGTTTCTTCTTGCAGCT +
Preference number: 4 (lower is better)
Translates to: EQGLYFLKAECGRLYFNAWLLLV*MFLLAA
Trigger: AGCTGCAAGAAGAAACATTCAGACTAGAAGCAGCCA...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTATGTACTCTTGCTTCTaGTCACAGTTCACAGCACAG +
Preference number: 4 (lower is better)
Translates to: EQGLYFLKAECGRLYFNAMYSCF*SQFTAQ
Trigger: CTGTGCTGTGAACTGTGAGCAGAAGCAAGAGTACAT...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp ACGATTCATGCGTATAATCCAAGAAGACCATGTGTTCATGGCAGCCTGGGTTACAGCTTGAATTTCTGGTaGTGCTCCTTGATTCTGTTT +
Preference number: 4 (lower is better)
Translates to: TIHAYNPRRPCVHGSLGYSLNFW*CSLILF
Trigger: AAACAGAATCAAGGAGCAGCACCAGAAATTCAAGCT...GTAACCCAGGCTGCCATGAACACATGGTCTTCTTGGATTATACGCATGAATCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp GTAAAGGACAAAGTAACCAAAGATAGGAGAGAGAGGAATCCTCATGAGAAACACGGTAGGATCTTCTTGTaGTGGTTGCTTGTCTTTGCC +
Preference number: 4 (lower is better)
Translates to: VKDKVTKDRRERNPHEKHGRIFL*WLLVFA
Trigger: GGCAAAGACAAGCAACCAGCACAAGAAGATCCTACC...GTGTTTCTCATGAGGATTCCTCTCTCTCCTATCTTTGGTTACTTTGTCCTTTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 72 bp AGGCAGAGGCAGGAGAATAGTCTTGAGTCAAAGAAGTaGAGGAAGGTCTGGATAATATCCCTAGATTGTCTT +
Preference number: 4 (lower is better)
Translates to: RQRQENSLESKK*RKVWIISLDCL
Trigger: AAGACAATCTAGGGATATTATCCAGACCTTCCTCAACTTCTTTGACTCAAGACTATTCTCCTGCCTCTGCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 72 bp CTCTGCATGCCTGGGGATTGTCTTTTACTCACTCGCTaGTTCTTCTCACGGCATTTAATTCTTTCACATTTG +
Preference number: 4 (lower is better)
Translates to: LCMPGDCLLLTR*FFSRHLILSHL
Trigger: CAAATGTGAAAGAATTAAATGCCGTGAGAAGAACAAGCGAGTGAGTAAAAGACAATCCCCAGGCATGCAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 72 bp ATGATGAGGAATATATCCTCAGAACTCTCGACTGAATaGTCAGCCAGAGGGGGAATCTCTTACAGAACAAAG +
Preference number: 4 (lower is better)
Translates to: MMRNISSELSTE*SARGGISYRTK
Trigger: CTTTGTTCTGTAAGAGATTCCCCCTCTGGCTGACAATTCAGTCGAGAGTTCTGAGGATATATTCCTCATCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp GTAAAGGACAAAGTAACCAAAGATAGGAGAGAGAGGAATCCTCATGAGAAACACTCTGGTGCTGCTCCTTaGTTCTGTTTAGGGTCTAAT +
Preference number: 4 (lower is better)
Translates to: VKDKVTKDRRERNPHEKHSGAAP*FCLGSN
Trigger: ATTAGACCCTAAACAGAATCAAGGAGCAGCACCAGA...GTGTTTCTCATGAGGATTCCTCTCTCTCCTATCTTTGGTTACTTTGTCCTTTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACTGCAGTGCTGCAACCTaGATATCCAATTCATGGCAT +
Preference number: 4 (lower is better)
Translates to: IRLPRKQKNELLPFALLYCSAAT*ISNSWH
Trigger: ATGCCATGAATTGGATATGCAGGTTGCAGCACTGCA...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CCA 90 bp GTAAAGGACAAAGTAACCAAAGATAGGAGAGAGAGGAATCCTCATGAGAAACACCCTTGTTTCTTCCAATaGAAAGCCATCCTAGGCACA +
Preference number: 4 (lower is better)
Translates to: VKDKVTKDRRERNPHEKHPCFFQ*KAILGT
Trigger: TGTGCCTAGGATGGCTTTCCATTGGAAGAAACAAGG...GTGTTTCTCATGAGGATTCCTCTCTCTCCTATCTTTGGTTACTTTGTCCTTTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211683.2
3UTR CAA 72 bp TCTGTACTGAGTTACAGTAACGACCCCGTGACTTGTTaGGAAATTGACAATAATGTTCTGATTCTGCTGCCT +
Preference number: 4 (lower is better)
Translates to: SVLSYSNDPVTC*EIDNNVLILLP
Trigger: AGGCAGCAGAATCAGAACATTATTGTCAATTTCCAAACAAGTCACGGGGTCGTTACTGTAACTCAGTACAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp CCATTTACTGAAGGAAATCCACCAAACATTAAAGACAGAGCAAACAACAGCAGAACAGGATCTATCTTCTaGAGAACCTGGGACATGACA +
Preference number: 4 (lower is better)
Translates to: PFTEGNPPNIKDRANNSRTGSIF*RTWDMT
Trigger: TGTCATGTCCCAGGTTCTTCAGAAGATAGATCCTGT...TCTGCTGTTGTTTGCTCTGTCTTTAATGTTTGGTGGATTTCCTTCAGTAAATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp CCATTTACTGAAGGAAATCCACCAAACATTAAAGACAGAGCAAACAACAGCAGACTTGAATGGCTGTCATaGCGACATGCTGAACAGATT +
Preference number: 4 (lower is better)
Translates to: PFTEGNPPNIKDRANNSRLEWLS*RHAEQI
Trigger: AATCTGTTCAGCATGTCGTCATGACAGCCATTCAAG...TCTGCTGTTGTTTGCTCTGTCTTTAATGTTTGGTGGATTTCCTTCAGTAAATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACTTACTCATTAGCTCTTaGATGGCTGTCATGACGACA +
Preference number: 4 (lower is better)
Translates to: IRLPRKQKNELLPFALLYLLISS*MAVMTT
Trigger: TGTCGTCATGACAGCCATTCAAGAGCTAATGAGTAA...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp CCATTTACTGAAGGAAATCCACCAAACATTAAAGACAGAGCAAACAACAGCAGAACTTCTAGAAGTCTCTaGTTCACAAGCCTGTTCTCC +
Preference number: 4 (lower is better)
Translates to: PFTEGNPPNIKDRANNSRTSRSL*FTSLFS
Trigger: GGAGAACAGGCTTGTGAATCAGAGACTTCTAGAAGT...TCTGCTGTTGTTTGCTCTGTCTTTAATGTTTGGTGGATTTCCTTCAGTAAATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CCA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTAACGCAACTCTTCAATaGTTTCCTTCAGAGAATCTC +
Preference number: 4 (lower is better)
Translates to: EQGLYFLKAECGRLYFNANATLQ*FPSENL
Trigger: GAGATTCTCTGAAGGAAACCATTGAAGAGTTGCGTT...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACAATTCATGGCATCTTTaGGCAATTTCCTCCTTTGCT +
Preference number: 4 (lower is better)
Translates to: IRLPRKQKNELLPFALLYNSWHL*AISSFA
Trigger: AGCAAAGGAGGAAATTGCTCAAAGATGCCATGAATT...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACTCTCCAGCTCATTCTTaGGTAGATTTGCATCATCTA +
Preference number: 4 (lower is better)
Translates to: IRLPRKQKNELLPFALLYSPAHS*VDLHHL
Trigger: TAGATGATGCAAATCTACGCAAGAATGAGCTGGAGA...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
3UTR CAA 72 bp ATTCCTTTATTATATGAGGATAAAAATCCCAAATCCTaGGAACTGGACAGATGGCTTAGCTGGCTGCTCTTG +
Preference number: 4 (lower is better)
Translates to: IPLLYEDKNPKS*ELDRWLSWLLL
Trigger: CAAGAGCAGCCAGCTAAGCCATCTGTCCAGTTCCAAGGATTTGGGATTTTTATCCTCATATAATAAAGGAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACTCATCTAGAAGGCTCTaGAATAAGGCAATTTTCTCA +
Preference number: 4 (lower is better)
Translates to: IRLPRKQKNELLPFALLYSSRRL*NKAIFS
Trigger: TGAGAAAATTGCCTTATTGCAGAGCCTTCTAGATGA...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp CCATTTACTGAAGGAAATCCACCAAACATTAAAGACAGAGCAAACAACAGCAGATCATTGTTGGCTTCATaGAGCTTCTCTAGATGTTCT +
Preference number: 4 (lower is better)
Translates to: PFTEGNPPNIKDRANNSRSLLAS*SFSRCS
Trigger: AGAACATCTAGAGAAGCTGCATGAAGCCAACAATGA...TCTGCTGTTGTTTGCTCTGTCTTTAATGTTTGGTGGATTTCCTTCAGTAAATGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR TCA 90 bp TTAATCCCTTTAGCAACTTCTAGTGAGCTGACCTGTATTTTCTTTCCTTTTCTGTCTGCTTTTGAACCTTaGTCCTGCAAAGATTTTTGC +
Preference number: 4 (lower is better)
Translates to: LIPLATSSELTCIFFPFLSAFEP*SCKDFC
Trigger: GCAAAAATCTTTGCAGGATCAAGGTTCAAAAGCAGA...CAGAAAAGGAAAGAAAATACAGGTCAGCTCACTAGAAGTTGCTAAAGGGATTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACTTCCGTAAAGCCTCTTaGAATTCTTCAATTCTTAAG +
Preference number: 4 (lower is better)
Translates to: IRLPRKQKNELLPFALLYFRKAS*NSSILK
Trigger: CTTAAGAATTGAAGAATTGCAAGAGGCTTTACGGAA...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR GCA 90 bp TTAATCCCTTTAGCAACTTCTAGTGAGCTGACCTGTATTTTCTTTCCTTTTCTGTTGAATTTCTGGTGCTaGTCCTTGATTCTGTTTAGG +
Preference number: 4 (lower is better)
Translates to: LIPLATSSELTCIFFPFLLNFWC*SLILFR
Trigger: CCTAAACAGAATCAAGGAGCAGCACCAGAAATTCAA...CAGAAAAGGAAAGAAAATACAGGTCAGCTCACTAGAAGTTGCTAAAGGGATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS CCA 90 bp AGAACCTGGGACATGACAACGCCGTTCGTTAAGTCCTCCGCGGTCTaGCACGGTGCATCCACATTAAAGGTCTGGATCCAAGTGAGCAGG +
Preference number: 5 (lower is better)
Translates to: RTWDMTTPFVKSSAV*HGASTLKVWIQVSR
Trigger: CCTGCTCACTTGGATCCAGACCTTTAATGTGGATGCACCGTGCCAGACCGCGGAGGACTTAACGAACGGCGTTGTCATGTCCCAGGTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CAA 90 bp TGCTGTCCCCTGTCACCTAGGCCCCAGGAAGTGAGCCCAGGCAAGTGCTACGCTGTCTCCAGCTCATTCTaGCGTAGATTTGCATCATCT +
Preference number: 5 (lower is better)
Translates to: CCPLSPRPQEVSPGKCYAVSSSF*RRFASS
Trigger: AGATGATGCAAATCTACGCAAGAATGAGCTGGAGAC...AGCGTAGCACTTGCCTGGGCTCACTTCCTGGGGCCTAGGTGACAGGGGACAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS TCA 90 bp GAATGTACTCTTGCTTCTGCTCACAGTTCACAGCACAGCCTAGAATaGGCTGCAGCATCCTTCCGAGCTCTGCTGCATCCGAATGCTCCC +
Preference number: 5 (lower is better)
Translates to: ECTLASAHSSQHSLE*AAASFRALLHPNAP
Trigger: GGGAGCATTCGGATGCAGCAGAGCTCGGAAGGATGCTGCAGCTCATTCTAGGCTGTGCTGTGAACTGTGAGCAGAAGCAAGAGTACATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CAA 90 bp CCTGCTGCTTTGGTCTGCCCAGGCGGATGCCTCACAGCCTGCTTGAACATTTGTACTACTTTTCTCCTCTaGCAGTGCTGCAACCTGCAT +
Preference number: 5 (lower is better)
Translates to: PAALVCPGGCLTACLNICTTFLL*QCCNLH
Trigger: ATGCAGGTTGCAGCACTGCAAGAGGAGAAAAGTAGT...ACAAATGTTCAAGCAGGCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CAA 90 bp CCTGCTGCTTTGGTCTGCCCAGGCGGATGCCTCACAGCCTGCTTGAACATTTGTCAATTCATGGCATCTTaGAGCAATTTCCTCCTTTGC +
Preference number: 5 (lower is better)
Translates to: PAALVCPGGCLTACLNICQFMAS*SNFLLC
Trigger: GCAAAGGAGGAAATTGCTCAAAGATGCCATGAATTG...ACAAATGTTCAAGCAGGCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CAA 90 bp CCTGCTGCTTTGGTCTGCCCAGGCGGATGCCTCACAGCCTGCTTGAACATTTGTAGAGTCATTCCCATATaGTACCAGGCACTAACAATG +
Preference number: 5 (lower is better)
Translates to: PAALVCPGGCLTACLNICRVIPI*YQALTM
Trigger: CATTGTTAGTGCCTGGTACAATATGGGAATGACTCT...ACAAATGTTCAAGCAGGCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS TCA 90 bp TATCGTCGAAATATACAGGATCTATCTTCTGAAGAACCTGGGACATaGCAACGCCGTTCGTTAAGTCCTCCGCGGTCTGGCACGGTGCAT +
Preference number: 5 (lower is better)
Translates to: YRRNIQDLSSEEPGT*QRRSLSPPRSGTVH
Trigger: ATGCACCGTGCCAGACCGCGGAGGACTTAACGAACGGCGTTGTCATGTCCCAGGTTCTTCAGAAGATAGATCCTGTATATTTCGACGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CAA 90 bp CCTGCTGCTTTGGTCTGCCCAGGCGGATGCCTCACAGCCTGCTTGAACATTTGTTTGATTTTTAAGAGCTaGAATTTCTGGTGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: PAALVCPGGCLTACLNICLIFKS*NFWCCS
Trigger: GGAGCAGCACCAGAAATTCAAGCTCTTAAAAATCAA...ACAAATGTTCAAGCAGGCTGTGAGGCATCCGCCTGGGCAGACCAAAGCAGCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CAA 90 bp AATCCTGAGACTGAGGTGCCAACAGGAAACAGCACGTACAGCAGAAATGGAGCATCTTGTGCTGGTTGCTaGTCTTTGCCTAGCCAGAAA +
Preference number: 5 (lower is better)
Translates to: NPETEVPTGNSTYSRNGASCAGC*SLPSQK
Trigger: TTTCTGGCTAGGCAAAGACAAGCAACCAGCACAAGA...TGCTCCATTTCTGCTGTACGTGCTGTTTCCTGTTGGCACCTCAGTCTCAGGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS TCA 90 bp TTATCAGAAGAGTGTCTGAGAACGTCTATTTCATCCTTTAGAGACTaGGCTTCGTCTGCCAAAGTGGTCAGCTCATCGTTCTGCTGCCGA +
Preference number: 5 (lower is better)
Translates to: LSEECLRTSISSFRD*ASSAKVVSSSFCCR
Trigger: TCGGCAGCAGAACGATGAGCTGACCACTTTGGCAGACGAAGCTCAGTCTCTAAAGGATGAAATAGACGTTCTCAGACACTCTTCTGATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS CCA 90 bp GAACGTCTATTTCATCCTTTAGAGACTGAGCTTCGTCTGCCAAAGTaGTCAGCTCATCGTTCTGCTGCCGAAGCTCAGAGATTTCCTTTT +
Preference number: 5 (lower is better)
Translates to: ERLFHPLETELRLPK*SAHRSAAEAQRFPF
Trigger: AAAAGGAAATCTCTGAGCTTCGGCAGCAGAACGATGAGCTGACCACTTTGGCAGACGAAGCTCAGTCTCTAAAGGATGAAATAGACGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS GCA 90 bp GCGGCATTAGCTTTTCTTAACTCTTCCTCCAGACTGACAGTGTTCTaGATGTACATCGTATTCTTTTCTTCCAAGAGCTTAACCTGCCGC +
Preference number: 5 (lower is better)
Translates to: AALAFLNSSSRLTVF*MYIVFFSSKSLTCR
Trigger: GCGGCAGGTTAAGCTCTTGGAAGAAAAGAATACGATGTACATGCAGAACACTGTCAGTCTGGAGGAAGAGTTAAGAAAAGCTAATGCCGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037182.14
ENSMUST00000147613.3
CDS-3UTR CAA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACCTTCCTGCTGGGCTATaGGGATCTTCTATAGAATCA +
Preference number: 5 (lower is better)
Translates to: IRLPRKQKNELLPFALLYLPAGL*GSSIES
Trigger: TGATTCTATAGAAGATCCCAATAGCCCAGCAGGAAG...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CAA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTCTGAATCTTCTGCTTTaGAACCTTGATCCTGCAAAG +
Preference number: 5 (lower is better)
Translates to: EQGLYFLKAECGRLYFNALNLLL*NLDPAK
Trigger: CTTTGCAGGATCAAGGTTCAAAAGCAGAAGATTCAG...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS GCA 90 bp TTGTTAAATCTTGGCTCGAGATCTTCAATAATGGCTCTCTTTTTCTaGAATTCATTGTTGGCTTCATGCAGCTTCTCTCTGTTCTCCGTC +
Preference number: 5 (lower is better)
Translates to: LLNLGSRSSIMALFF*NSLLASCSFSLFSV
Trigger: GACGGAGAACAGAGAGAAGCTGCATGAAGCCAACAATGAATTGCAGAAAAAGAGAGCCATTATTGAAGATCTCGAGCCAAGATTTAACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147613.3
CDS-3UTR CAA 90 bp GAACAAGGTCTCTATTTCCTTAAAGCTGAATGTGGACGTCTCTACTTCAACGCTCATCATCATAATGGCTaGAATGTACTCTTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: EQGLYFLKAECGRLYFNAHHHNG*NVLLLL
Trigger: CAGAAGCAAGAGTACATTCAAGCCATTATGATGATG...AGCGTTGAAGTAGAGACGTCCACATTCAGCTTTAAGGAAATAGAGACCTTGTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CAA 90 bp CCATTTACTGAAGGAAATCCACCAAACATTAAAGACAGAGCAAACAACAGCAGATCTACAACTTGTCTCTaGTATGTCTCAAGCTGTCCC +
Preference number: 5 (lower is better)
Translates to: PFTEGNPPNIKDRANNSRSTTCL*YVSSCP
Trigger: GGGACAGCTTGAGACATACAAGAGACAAGTTGTAGA...TCTGCTGTTGTTTGCTCTGTCTTTAATGTTTGGTGGATTTCCTTCAGTAAATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CAA 90 bp GTAAAGGACAAAGTAACCAAAGATAGGAGAGAGAGGAATCCTCATGAGAAACACTTGCAGCTCTACAACTaGTCTCTTGTATGTCTCAAG +
Preference number: 5 (lower is better)
Translates to: VKDKVTKDRRERNPHEKHLQLYN*SLVCLK
Trigger: CTTGAGACATACAAGAGACAAGTTGTAGAGCTGCAA...GTGTTTCTCATGAGGATTCCTCTCTCTCCTATCTTTGGTTACTTTGTCCTTTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CAA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACATTCTTAAGGAGCTGTaGTTAAATCTTGGCTCGAGA +
Preference number: 5 (lower is better)
Translates to: IRLPRKQKNELLPFALLYILKEL*LNLGSR
Trigger: TCTCGAGCCAAGATTTAACAACAGCTCCTTAAGAAT...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CAA 90 bp CCATTTACTGAAGGAAATCCACCAAACATTAAAGACAGAGCAAACAACAGCAGAGTCCCGTTCCTGCAGTaGATTTTTAAGAGCTTGAAT +
Preference number: 5 (lower is better)
Translates to: PFTEGNPPNIKDRANNSRVPFLQ*IFKSLN
Trigger: ATTCAAGCTCTTAAAAATCAACTGCAGGAACGGGAC...TCTGCTGTTGTTTGCTCTGTCTTTAATGTTTGGTGGATTTCCTTCAGTAAATGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CAA 90 bp GTAAAGGACAAAGTAACCAAAGATAGGAGAGAGAGGAATCCTCATGAGAAACACGAGACAAGTTTCATATaGTACCAGGCACTAACAATG +
Preference number: 5 (lower is better)
Translates to: VKDKVTKDRRERNPHEKHETSFI*YQALTM
Trigger: CATTGTTAGTGCCTGGTACAATATGAAACTTGTCTC...GTGTTTCTCATGAGGATTCCTCTCTCTCCTATCTTTGGTTACTTTGTCCTTTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211683.2
CDS GCA 90 bp AAATCTAACTTATCTGCTTTCTTTGATTCGTCAGATAATCTATTTTaGAGCTCTACAACTTGTCTCTTGTATGTCTCAAGCTGTCCCCGG +
Preference number: 5 (lower is better)
Translates to: KSNLSAFFDSSDNLF*SSTTCLLYVSSCPR
Trigger: CCGGGGACAGCTTGAGACATACAAGAGACAAGTTGTAGAGCTGCAAAATAGATTATCTGACGAATCAAAGAAAGCAGATAAGTTAGATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037182.14
ENSMUST00000147613.3
CDS-3UTR CAA 90 bp ATTAGGCTCCCGAGAAAACAAAAGAATGAACTCCTACCATTTGCTCTTCTGTACATCTTTAACCTCCAATaGTCTCCTACTTCAGTTTTG +
Preference number: 5 (lower is better)
Translates to: IRLPRKQKNELLPFALLYIFNLQ*SPTSVL
Trigger: CAAAACTGAAGTAGGAGACAATTGGAGGTTAAAGAT...GTACAGAAGAGCAAATGGTAGGAGTTCATTCTTTTGTTTTCTCGGGAGCCTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CAA 90 bp TTAATCCCTTTAGCAACTTCTAGTGAGCTGACCTGTATTTTCTTTCCTTTTCTGTTCTGCAATTCATTGTaGGCTTCATGCAGCTTCTCT +
Preference number: 5 (lower is better)
Translates to: LIPLATSSELTCIFFPFLFCNSL*ASCSFS
Trigger: AGAGAAGCTGCATGAAGCCAACAATGAATTGCAGAA...CAGAAAAGGAAAGAAAATACAGGTCAGCTCACTAGAAGTTGCTAAAGGGATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS GCA 90 bp TTGTTAAATCTTGGCTCGAGATCTTCAATAATGGCTCTCTTTTTCTaGAATTCATTGTTGGCTTCATGCAGCTTCTCTAGATGTTCTTCA +
Preference number: 5 (lower is better)
Translates to: LLNLGSRSSIMALFF*NSLLASCSFSRCSS
Trigger: TGAAGAACATCTAGAGAAGCTGCATGAAGCCAACAATGAATTGCAGAAAAAGAGAGCCATTATTGAAGATCTCGAGCCAAGATTTAACAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS GCA 90 bp TCTTCCATTTGCTTCATTTCTTCTTCTTTCTTCCGTAAAGCCTCTTaGAATTCTTCAATTCTTAAGGAGCTGTTGTTAAATCTTGGCTCG +
Preference number: 5 (lower is better)
Translates to: SSICFISSSFFRKAS*NSSILKELLLNLGS
Trigger: CGAGCCAAGATTTAACAACAGCTCCTTAAGAATTGAAGAATTGCAAGAGGCTTTACGGAAGAAAGAAGAAGAAATGAAGCAAATGGAAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS-3UTR CAA 90 bp TTAATCCCTTTAGCAACTTCTAGTGAGCTGACCTGTATTTTCTTTCCTTTTCTGGTACGGATAACACTCTaGGCCTTCTCTAAGTATTTT +
Preference number: 5 (lower is better)
Translates to: LIPLATSSELTCIFFPFLVRITL*AFSKYF
Trigger: AAAATACTTAGAGAAGGCCAAGAGTGTTATCCGTAC...CAGAAAAGGAAAGAAAATACAGGTCAGCTCACTAGAAGTTGCTAAAGGGATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS GCA 72 bp TTCTGCTCACAGTTCACAGCACAGCCTAGAATGAGCTaGAGCATCCTTCCGAGCTCTGCTGCATCCGAATGC +
Preference number: 6 (lower is better)
Translates to: FCSQFTAQPRMS*SILPSSAASEC
Trigger: GCATTCGGATGCAGCAGAGCTCGGAAGGATGCTGCAGCTCATTCTAGGCTGTGCTGTGAACTGTGAGCAGAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS TCA 72 bp AATATACAGGATCTATCTTCTGAAGAACCTGGGACATaGCAACGCCGTTCGTTAAGTCCTCCGCGGTCTGGC +
Preference number: 6 (lower is better)
Translates to: NIQDLSSEEPGT*QRRSLSPPRSG
Trigger: GCCAGACCGCGGAGGACTTAACGAACGGCGTTGTCATGTCCCAGGTTCTTCAGAAGATAGATCCTGTATATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS GCA 72 bp GCTTCGTCTGCCAAAGTGGTCAGCTCATCGTTCTGCTaGCGAAGCTCAGAGATTTCCTTTTCTAACTCCTCA +
Preference number: 6 (lower is better)
Translates to: ASSAKVVSSSFC*RSSEISFSNSS
Trigger: TGAGGAGTTAGAAAAGGAAATCTCTGAGCTTCGGCAGCAGAACGATGAGCTGACCACTTTGGCAGACGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS TCA 72 bp GAGTGTCTGAGAACGTCTATTTCATCCTTTAGAGACTaGGCTTCGTCTGCCAAAGTGGTCAGCTCATCGTTC +
Preference number: 6 (lower is better)
Translates to: ECLRTSISSFRD*ASSAKVVSSSF
Trigger: GAACGATGAGCTGACCACTTTGGCAGACGAAGCTCAGTCTCTAAAGGATGAAATAGACGTTCTCAGACACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS GCA 72 bp ATGGCTCTCTTTTTCTGCAATTCATTGTTGGCTTCATaGAGCTTCTCTCTGTTCTCCGTCTCCAGCTCATTC +
Preference number: 6 (lower is better)
Translates to: MALFFCNSLLAS*SFSLFSVSSSF
Trigger: GAATGAGCTGGAGACGGAGAACAGAGAGAAGCTGCATGAAGCCAACAATGAATTGCAGAAAAAGAGAGCCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147613.3
CDS CAA 72 bp GAGTCGGTCCCGTTCCTGCAGTTGATTTTTAAGAGCTaGAATTTCTGGTGCTGCTCCTTGATTCTGTTTAGG +
Preference number: 6 (lower is better)
Translates to: ESVPFLQLIFKS*NFWCCSLILFR
Trigger: CCTAAACAGAATCAAGGAGCAGCACCAGAAATTCAAGCTCTTAAAAATCAACTGCAGGAACGGGACCGACTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS TCA 72 bp AGTTCTTCTACTTGTGACTGTACTTCTAGAAGTCTCTaGTTCACAAGCCTGTTCTCCGTCTCCAGCTCATTC +
Preference number: 6 (lower is better)
Translates to: SSSTCDCTSRSL*FTSLFSVSSSF
Trigger: GAATGAGCTGGAGACGGAGAACAGGCTTGTGAATCAGAGACTTCTAGAAGTACAGTCACAAGTAGAAGAACT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS GCA 72 bp ATGTACATCGTATTCTTTTCTTCCAAGAGCTTAACCTaGCGCCTCAAATCTCCAAGGTCTTCCAGCTTCTTC +
Preference number: 6 (lower is better)
Translates to: MYIVFFSSKSLT*RLKSPRSSSFF
Trigger: GAAGAAGCTGGAAGACCTTGGAGATTTGAGGCGGCAGGTTAAGCTCTTGGAAGAAAAGAATACGATGTACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037182.14
ENSMUST00000147613.3
CDS CAA 72 bp GACATGCTGAACAGATTCCTCCATCATCATAATGGCTaGAATGTACTCTTGCTTCTGCTCACAGTTCACAGC +
Preference number: 6 (lower is better)
Translates to: DMLNRFLHHHNG*NVLLLLLTVHS
Trigger: GCTGTGAACTGTGAGCAGAAGCAAGAGTACATTCAAGCCATTATGATGATGGAGGAATCTGTTCAGCATGTC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS TCA 72 bp AGCCAATTATCGTCGAAATATACAGGATCTATCTTCTaGAGAACCTGGGACATGACAACGCCGTTCGTTAAG +
Preference number: 6 (lower is better)
Translates to: SQLSSKYTGSIF*RTWDMTTPFVK
Trigger: CTTAACGAACGGCGTTGTCATGTCCCAGGTTCTTCAGAAGATAGATCCTGTATATTTCGACGATAATTGGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS TCA 72 bp CTTCACTTCAGGGCAGGCTGGTATTCTCAAACAAACTaGGACAAGTTTCATATTGTACCAGGCACTAACAAT +
Preference number: 6 (lower is better)
Translates to: LHFRAGWYSQTN*DKFHIVPGTNN
Trigger: ATTGTTAGTGCCTGGTACAATATGAAACTTGTCTCAGTTTGTTTGAGAATACCAGCCTGCCCTGAAGTGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211683.2
CDS CAA 90 bp CTTGGCTCGAGATCTTCAATAATGGCTCTCTTTTTCTGCAATTCATaGTTGGCTTCATGCAGCTTCTCTAGATGTTCTTCAAGCTTCTTT +
Preference number: 6 (lower is better)
Translates to: LGSRSSIMALFFCNS*LASCSFSRCSSSFF
Trigger: AAAGAAGCTTGAAGAACATCTAGAGAAGCTGCATGAAGCCAACAATGAATTGCAGAAAAAGAGAGCCATTATTGAAGATCTCGAGCCAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14
CDS GCA 72 bp GCTTTTCTTAACTCTTCCTCCAGACTGACAGTGTTCTaGATGTACATCGTATTCTTTTCTTCCAAGAGCTTA +
Preference number: 6 (lower is better)
Translates to: AFLNSSSRLTVF*MYIVFFSSKSL
Trigger: TAAGCTCTTGGAAGAAAAGAATACGATGTACATGCAGAACACTGTCAGTCTGGAGGAAGAGTTAAGAAAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037182.14
ENSMUST00000147613.3
CDS GCA 72 bp TCATTCTTGCGTAGATTTGCATCATCTAGAAGGCTCTaGAATAAGGCAATTTTCTCATTGTCTGAATCCTCT +
Preference number: 6 (lower is better)
Translates to: SFLRRFASSRRL*NKAIFSLSESS
Trigger: AGAGGATTCAGACAATGAGAAAATTGCCTTATTGCAGAGCCTTCTAGATGATGCAAATCTACGCAAGAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037182.14
ENSMUST00000147613.3
CDS GCA 72 bp TTATCTGCTTTCTTTGATTCGTCAGATAATCTATTTTaGAGCTCTACAACTTGTCTCTTGTATGTCTCAAGC +
Preference number: 6 (lower is better)
Translates to: LSAFFDSSDNLF*SSTTCLLYVSS
Trigger: GCTTGAGACATACAAGAGACAAGTTGTAGAGCTGCAAAATAGATTATCTGACGAATCAAAGAAAGCAGATAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037182.14
ENSMUST00000147613.3
CDS CAA 72 bp CTGATCTTTAACCTCCAATTGTCTCCTACTTCAGTTTaGATTCTGTTTAGCCAATTATCGTCGAAATATACA +
Preference number: 6 (lower is better)
Translates to: LIFNLQLSPTSV*ILFSQLSSKYT
Trigger: TGTATATTTCGACGATAATTGGCTAAACAGAATCAAAACTGAAGTAGGAGACAATTGGAGGTTAAAGATCAG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037182.14