Pregenerated sensors for HNRNPA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059005Ensembl transcript IDs: ENSMUST00000090792.11, ENSMUST00000111962.8, ENSMUST00000111964.8, ENSMUST00000141974.2, ENSMUST00000164947.9
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTACCCACCAGTTTGCTCAGACCCAGCAGACTTTGTGGGTCTGTATaGGAAAGTAATGTTAAACTGGGAGATGACATACATCTACCAGCC | + |
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Preference number: 1 (lower is better) Translates to: VPTSLLRPSRLCGSV*ESNVKLGDDIHLPA Trigger: GGCTGGTAGATGTATGTCATCTCCCAGTTTAACATTACTTTCCCATACAGACCCACAAAGTCTGCTGGGTCTGAGCAAACTGGTGGGTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR GCA 90 bp | TCAGATATTTGGGGCTGTGAGGTGCTTGCACTGAGCAACCGTGTGTaGTACATCTTCTGCTGCTTTGTTTGGACAACACCTTACTATCAT | + |
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Preference number: 1 (lower is better) Translates to: SDIWGCEVLALSNRV*YIFCCFVWTTPYYH Trigger: ATGATAGTAAGGTGTTGTCCAAACAAAGCAGCAGAAGATGTAGCACACACGGTTGCTCAGTGCAAGCACCTCACAGCCCCAAATATCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR CCA 90 bp | CCTAATTTATACACGAATGTGAACACACCTTTCAGACATGTAAACTaGGAGCAGCATCCCACAGGTCCAACAAAACCAGAGGCAGCCTCT | + |
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Preference number: 1 (lower is better) Translates to: PNLYTNVNTPFRHVN*EQHPTGPTKPEAAS Trigger: AGAGGCTGCCTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCTGAAAGGTGTGTTCACATTCGTGTATAAATTAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR TCA 90 bp | TCACAGCACCTTGCACATCTGCATGCTTGCTACCATGCCAATTACTaGACTATTGTCAGGAGCGTTTCAAATTGTGACATTAACAGAACC | + |
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Preference number: 1 (lower is better) Translates to: SQHLAHLHACYHANY*TIVRSVSNCDINRT Trigger: GGTTCTGTTAATGTCACAATTTGAAACGCTCCTGACAATAGTTCAGTAATTGGCATGGTAGCAAGCATGCAGATGTGCAAGGTGCTGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR TCA 90 bp | AAAGTAATGTTAAACTGGGAGATGACATACATCTACCAGCCTTGGTaGGTAAAGAGCAGTATGAACACTTTGTACCCCGAACTATTGGCA | + |
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Preference number: 1 (lower is better) Translates to: KVMLNWEMTYIYQPW*VKSSMNTLYPELLA Trigger: TGCCAATAGTTCGGGGTACAAAGTGTTCATACTGCTCTTTACTCACCAAGGCTGGTAGATGTATGTCATCTCCCAGTTTAACATTACTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR TCA 90 bp | ATGCCTCCTAAGCAAATGTATTTTCTCCAATCTGTTAACCACCATTaGACGATTGCTACCTCATTGGTAACTATGATTTCTGTGAACTTT | + |
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Preference number: 1 (lower is better) Translates to: MPPKQMYFLQSVNHH*TIATSLVTMISVNF Trigger: AAAGTTCACAGAAATCATAGTTACCAATGAGGTAGCAATCGTTCAATGGTGGTTAACAGATTGGAGAAAATACATTTGCTTAGGAGGCAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR TCA 90 bp | AGACATGTAAACTGGGAGCAGCATCCCACAGGTCCAACAAAACCAGAGGCAGCCAGGCTAGGACAACAGTaGGACCCTGTTTGTGATGGG | + |
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Preference number: 2 (lower is better) Translates to: RHVNWEQHPTGPTKPEAARLGQQ*DPVCDG Trigger: CCCATCACAAACAGGGTCTCACTGTTGTCCTAGCCT...GGCTGCCTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR TCA 90 bp | AGACATGTAAACTGGGAGCAGCATCCCACAGGTCCAACAAAACCAGAGGCAGCCTGGCAACTAGCTCATTaGTGTTCCAAAAGGCGAAGC | + |
|
Preference number: 2 (lower is better) Translates to: RHVNWEQHPTGPTKPEAAWQLAH*CSKRRS Trigger: GCTTCGCCTTTTGGAACATCAATGAGCTAGTTGCCA...GGCTGCCTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR GCA 90 bp | GCGCCTGTGGCAACTAGCTCATTGATGTTCCAAAAGGCGAAGCTCCTTCCTGCTCTGAGCAACCGTGTGTaGTACATCTTCTGCTGCTTT | + |
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Preference number: 2 (lower is better) Translates to: APVATSSLMFQKAKLLPALSNRV*YIFCCF Trigger: AAAGCAGCAGAAGATGTAGCACACACGGTTGCTCAG...AGCAGGAAGGAGCTTCGCCTTTTGGAACATCAATGAGCTAGTTGCCACAGGCGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR CCA 90 bp | AGACATGTAAACTGGGAGCAGCATCCCACAGGTCCAACAAAACCAGAGGCAGCCTTTAACTCCAGCACTTaGGAGACACAGAAGGCTGGT | + |
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Preference number: 2 (lower is better) Translates to: RHVNWEQHPTGPTKPEAAFNSST*ETQKAG Trigger: ACCAGCCTTCTGTGTCTCCCAAGTGCTGGAGTTAAA...GGCTGCCTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR GCA 90 bp | GCGCCTGTGGCAACTAGCTCATTGATGTTCCAAAAGGCGAAGCTCCTTCCTGCTGTGTGCTACATCTTCTaGTGCTTTGTTTGGACAACA | + |
|
Preference number: 2 (lower is better) Translates to: APVATSSLMFQKAKLLPAVCYIF*CFVWTT Trigger: TGTTGTCCAAACAAAGCAGCAGAAGATGTAGCACAC...AGCAGGAAGGAGCTTCGCCTTTTGGAACATCAATGAGCTAGTTGCCACAGGCGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR TCA 90 bp | GCGCCTGTGGCAACTAGCTCATTGATGTTCCAAAAGGCGAAGCTCCTTCCTGCTAGTCAGGGGTTTCAATaGGTGACTTTTATTCCTTTG | + |
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Preference number: 2 (lower is better) Translates to: APVATSSLMFQKAKLLPASQGFQ*VTFIPL Trigger: CAAAGGAATAAAAGTCACTCATTGAAACCCCTGACT...AGCAGGAAGGAGCTTCGCCTTTTGGAACATCAATGAGCTAGTTGCCACAGGCGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR TCA 90 bp | AGACATGTAAACTGGGAGCAGCATCCCACAGGTCCAACAAAACCAGAGGCAGCCAACCAAGTAAAAATCTaGTTTCAACGGTCAACTGCC | + |
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Preference number: 2 (lower is better) Translates to: RHVNWEQHPTGPTKPEAANQVKI*FQRSTA Trigger: GGCAGTTGACCGTTGAAATCAGATTTTTACTTGGTT...GGCTGCCTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR GCA 90 bp | AGACATGTAAACTGGGAGCAGCATCCCACAGGTCCAACAAAACCAGAGGCAGCCCCACCATTGAACGATTaGTACCTCATTGGTAACTAT | + |
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Preference number: 2 (lower is better) Translates to: RHVNWEQHPTGPTKPEAAPPLND*YLIGNY Trigger: ATAGTTACCAATGAGGTAGCAATCGTTCAATGGTGG...GGCTGCCTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR TCA 90 bp | AGTTCAGATATTTGGGGCTGTGAGGTGCTTGCACTGAGCAACCGTGTGTGCTACAGGGGTTTCAATGAGTaGCTTTTATTCCTTTGCTCT | + |
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Preference number: 2 (lower is better) Translates to: SSDIWGCEVLALSNRVCYRGFNE*LLFLCS Trigger: AGAGCAAAGGAATAAAAGTCACTCATTGAAACCCCT...GTAGCACACACGGTTGCTCAGTGCAAGCACCTCACAGCCCCAAATATCTGAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR TCA 90 bp | AGACATGTAAACTGGGAGCAGCATCCCACAGGTCCAACAAAACCAGAGGCAGCCGTGTTTTTGCAGAAATaGCAGTGGAACCATATTAGT | + |
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Preference number: 2 (lower is better) Translates to: RHVNWEQHPTGPTKPEAAVFLQK*QWNHIS Trigger: ACTAATATGGTTCCACTGTCATTTCTGCAAAAACAC...GGCTGCCTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR GCA 90 bp | AGACATGTAAACTGGGAGCAGCATCCCACAGGTCCAACAAAACCAGAGGCAGCCCATCATAGTATCTTATaGCTCCACTTCTCTGTTGTT | + |
|
Preference number: 2 (lower is better) Translates to: RHVNWEQHPTGPTKPEAAHHSIL*LHFSVV Trigger: AACAACAGAGAAGTGGAGGCATAAGATACTATGATG...GGCTGCCTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR CCA 90 bp | CCTTTCAGACATGTAAACTGGGAGCAGCATCCCACAGGTCCAACAAAACCAGAGGGGATGTTCCCTGTGTaGGAAACATTTTGCAGATTT | + |
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Preference number: 2 (lower is better) Translates to: PFRHVNWEQHPTGPTKPEGMFPV*ETFCRF Trigger: AAATCTGCAAAATGTTTCCCACACAGGGAACATCCC...CTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCTGAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR CAA 90 bp | ATACTCAGGCTACCAATCCTCACAGCACCTTGCACATCTGCATGCTaGCTACCATGCCAATTACTGAACTATTGTCAGGAGCGTTTCAAA | + |
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Preference number: 2 (lower is better) Translates to: ILRLPILTAPCTSAC*LPCQLLNYCQERFK Trigger: TTTGAAACGCTCCTGACAATAGTTCAGTAATTGGCATGGTAGCAAGCATGCAGATGTGCAAGGTGCTGTGAGGATTGGTAGCCTGAGTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR TCA 90 bp | CCTTTCAGACATGTAAACTGGGAGCAGCATCCCACAGGTCCAACAAAACCAGAGTACTCAGGATTTGAATaGAATTGTTCAGCACTAGCT | + |
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Preference number: 2 (lower is better) Translates to: PFRHVNWEQHPTGPTKPEYSGFE*NCSALA Trigger: AGCTAGTGCTGAACAATTTCATTCAAATCCTGAGTA...CTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCTGAAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR CAA 90 bp | TGGGAAAGTAATGTTAAACTGGGAGATGACATACATCTACCAGCCTaGGTGAGTAAAGAGCAGTATGAACACTTTGTACCCCGAACTATT | + |
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Preference number: 2 (lower is better) Translates to: WESNVKLGDDIHLPA*VSKEQYEHFVPRTI Trigger: AATAGTTCGGGGTACAAAGTGTTCATACTGCTCTTTACTCACCAAGGCTGGTAGATGTATGTCATCTCCCAGTTTAACATTACTTTCCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR TCA 90 bp | TCAAATTGTGACATTAACAGAACCCTTAAAAACCGAGCCCATTTCTCTGTAGTCCTTAACCAAGGAAAATaGCTAGACCAATGGGCCTTG | + |
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Preference number: 2 (lower is better) Translates to: SNCDINRTLKNRAHFSVVLNQGK*LDQWAL Trigger: CAAGGCCCATTGGTCTAGTCATTTTCCTTGGTTAAG...GACTACAGAGAAATGGGCTCGGTTTTTAAGGGTTCTGTTAATGTCACAATTTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR TCA 90 bp | TCAAATTGTGACATTAACAGAACCCTTAAAAACCGAGCCCATTTCTCTGTAGTCTTTATTCCTTTGCTCTaGAAAGCTGTGTGTGTGGGA | + |
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Preference number: 2 (lower is better) Translates to: SNCDINRTLKNRAHFSVVFIPLL*KAVCVG Trigger: TCCCACACACACAGCTTTTCAGAGCAAAGGAATAAA...GACTACAGAGAAATGGGCTCGGTTTTTAAGGGTTCTGTTAATGTCACAATTTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR CCA 90 bp | TCAAATTGTGACATTAACAGAACCCTTAAAAACCGAGCCCATTTCTCTGTAGTCTGTGACATTGACTTGTaGGAAACCAACAGTGTCATC | + |
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Preference number: 2 (lower is better) Translates to: SNCDINRTLKNRAHFSVVCDIDL*ETNSVI Trigger: GATGACACTGTTGGTTTCCCACAAGTCAATGTCACA...GACTACAGAGAAATGGGCTCGGTTTTTAAGGGTTCTGTTAATGTCACAATTTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR TCA 90 bp | TCAAATTGTGACATTAACAGAACCCTTAAAAACCGAGCCCATTTCTCTGTAGTCTTTGAAAAGCCAACATaGCTTCCCCTTATTGAAGGA | + |
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Preference number: 2 (lower is better) Translates to: SNCDINRTLKNRAHFSVVFEKPT*LPLIEG Trigger: TCCTTCAATAAGGGGAAGTCATGTTGGCTTTTCAAA...GACTACAGAGAAATGGGCTCGGTTTTTAAGGGTTCTGTTAATGTCACAATTTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR GCA 90 bp | TCAAATTGTGACATTAACAGAACCCTTAAAAACCGAGCCCATTTCTCTGTAGTCTCCTTTGATCCACCGTaGTTAAAAAGCACAACTTAT | + |
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Preference number: 2 (lower is better) Translates to: SNCDINRTLKNRAHFSVVSFDPP*LKSTTY Trigger: ATAAGTTGTGCTTTTTAAGCACGGTGGATCAAAGGA...GACTACAGAGAAATGGGCTCGGTTTTTAAGGGTTCTGTTAATGTCACAATTTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR GCA 90 bp | TCAAATTGTGACATTAACAGAACCCTTAAAAACCGAGCCCATTTCTCTGTAGTCGTTTTCTGGAAAAACTaGAGTAATTGTGAAGACCAA | + |
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Preference number: 2 (lower is better) Translates to: SNCDINRTLKNRAHFSVVVFWKN*SNCEDQ Trigger: TTGGTCTTCACAATTACTGCAGTTTTTCCAGAAAAC...GACTACAGAGAAATGGGCTCGGTTTTTAAGGGTTCTGTTAATGTCACAATTTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR GCA 90 bp | TCAAATTGTGACATTAACAGAACCCTTAAAAACCGAGCCCATTTCTCTGTAGTCATTGTAAAGTGTTTTTaGAGAAATGACAGTGGAACC | + |
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Preference number: 2 (lower is better) Translates to: SNCDINRTLKNRAHFSVVIVKCF*RNDSGT Trigger: GGTTCCACTGTCATTTCTGCAAAAACACTTTACAAT...GACTACAGAGAAATGGGCTCGGTTTTTAAGGGTTCTGTTAATGTCACAATTTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR CCA 72 bp | TTATCATACAGGCACCACCCTTTTAACTCCAGCACTTaGGAGACACAGAAGGCTGGTGGATTGAGTTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: LSYRHHPFNSST*ETQKAGGLSSR Trigger: CCTGGAACTCAATCCACCAGCCTTCTGTGTCTCCCAAGTGCTGGAGTTAAAAGGGTGGTGCCTGTATGATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR CAA 90 bp | GCGCCTGTGGCAACTAGCTCATTGATGTTCCAAAAGGCGAAGCTCCTTCCTGCTATACATCTACCAGCCTaGGTGAGTAAAGAGCAGTAT | + |
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Preference number: 3 (lower is better) Translates to: APVATSSLMFQKAKLLPAIHLPA*VSKEQY Trigger: ATACTGCTCTTTACTCACCAAGGCTGGTAGATGTAT...AGCAGGAAGGAGCTTCGCCTTTTGGAACATCAATGAGCTAGTTGCCACAGGCGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR CAA 90 bp | AGACATGTAAACTGGGAGCAGCATCCCACAGGTCCAACAAAACCAGAGGCAGCCCTAGCTTTTGGGAAGTaGCTCACTAGCATCATAGTA | + |
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Preference number: 3 (lower is better) Translates to: RHVNWEQHPTGPTKPEAALAFGK*LTSIIV Trigger: TACTATGATGCTAGTGAGCAACTTCCCAAAAGCTAG...GGCTGCCTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR CAA 90 bp | CCTTTCAGACATGTAAACTGGGAGCAGCATCCCACAGGTCCAACAAAACCAGAGCTTCTGCTGCTTTGTTaGGACAACACCTTACTATCA | + |
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Preference number: 3 (lower is better) Translates to: PFRHVNWEQHPTGPTKPELLLLC*DNTLLS Trigger: TGATAGTAAGGTGTTGTCCAAACAAAGCAGCAGAAG...CTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCTGAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR CAA 90 bp | AGACATGTAAACTGGGAGCAGCATCCCACAGGTCCAACAAAACCAGAGGCAGCCCTTTACCTTAGAACATaGAGTTGTACACATGAAGAG | + |
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Preference number: 3 (lower is better) Translates to: RHVNWEQHPTGPTKPEAALYLRT*SCTHEE Trigger: CTCTTCATGTGTACAACTCAATGTTCTAAGGTAAAG...GGCTGCCTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR CCA 72 bp | GAGCTTGAGGGGTGTCTCAACTGTGACATTGACTTGTaGGAAACCAACAGTGTCATCGGTTTTTACTGTGAG | + |
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Preference number: 3 (lower is better) Translates to: ELEGCLNCDIDL*ETNSVIGFYCE Trigger: CTCACAGTAAAAACCGATGACACTGTTGGTTTCCCACAAGTCAATGTCACAGTTGAGACACCCCTCAAGCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR CCA 72 bp | TACACGAATGTGAACACACCTTTCAGACATGTAAACTaGGAGCAGCATCCCACAGGTCCAACAAAACCAGAG | + |
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Preference number: 3 (lower is better) Translates to: YTNVNTPFRHVN*EQHPTGPTKPE Trigger: CTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCTGAAAGGTGTGTTCACATTCGTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR CAA 90 bp | CCTTTCAGACATGTAAACTGGGAGCAGCATCCCACAGGTCCAACAAAACCAGAGACGATTGCTACCTCATaGGTAACTATGATTTCTGTG | + |
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Preference number: 3 (lower is better) Translates to: PFRHVNWEQHPTGPTKPETIATS*VTMISV Trigger: CACAGAAATCATAGTTACCAATGAGGTAGCAATCGT...CTCTGGTTTTGTTGGACCTGTGGGATGCTGCTCCCAGTTTACATGTCTGAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR GCA 72 bp | CTCACAGCACCTTGCACATCTGCATGCTTGCTACCATaGCAATTACTGAACTATTGTCAGGAGCGTTTCAAA | + |
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Preference number: 3 (lower is better) Translates to: LTAPCTSACLLP*QLLNYCQERFK Trigger: TTTGAAACGCTCCTGACAATAGTTCAGTAATTGGCATGGTAGCAAGCATGCAGATGTGCAAGGTGCTGTGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR GCA 72 bp | GTGCTTGCACTGAGCAACCGTGTGTGCTACATCTTCTaGTGCTTTGTTTGGACAACACCTTACTATCATTTT | + |
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Preference number: 3 (lower is better) Translates to: VLALSNRVCYIF*CFVWTTPYYHF Trigger: AAAATGATAGTAAGGTGTTGTCCAAACAAAGCAGCAGAAGATGTAGCACACACGGTTGCTCAGTGCAAGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR CAA 90 bp | TCAAATTGTGACATTAACAGAACCCTTAAAAACCGAGCCCATTTCTCTGTAGTCTTGTACCCCGAACTATaGGCAGCAGTTTCAACGGGA | + |
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Preference number: 3 (lower is better) Translates to: SNCDINRTLKNRAHFSVVLYPEL*AAVSTG Trigger: TCCCGTTGAAACTGCTGCCAATAGTTCGGGGTACAA...GACTACAGAGAAATGGGCTCGGTTTTTAAGGGTTCTGTTAATGTCACAATTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR CCA 72 bp | AGTTTGCTCAGACCCAGCAGACTTTGTGGGTCTGTATaGGAAAGTAATGTTAAACTGGGAGATGACATACAT | + |
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Preference number: 3 (lower is better) Translates to: SLLRPSRLCGSV*ESNVKLGDDIH Trigger: ATGTATGTCATCTCCCAGTTTAACATTACTTTCCCATACAGACCCACAAAGTCTGCTGGGTCTGAGCAAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR TCA 72 bp | CTTGCACATCTGCATGCTTGCTACCATGCCAATTACTaGACTATTGTCAGGAGCGTTTCAAATTGTGACATT | + |
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Preference number: 3 (lower is better) Translates to: LAHLHACYHANY*TIVRSVSNCDI Trigger: AATGTCACAATTTGAAACGCTCCTGACAATAGTTCAGTAATTGGCATGGTAGCAAGCATGCAGATGTGCAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR CAA 90 bp | TCAAATTGTGACATTAACAGAACCCTTAAAAACCGAGCCCATTTCTCTGTAGTCACATCTTCTGCTGCTTaGTTTGGACAACACCTTACT | + |
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Preference number: 3 (lower is better) Translates to: SNCDINRTLKNRAHFSVVTSSAA*FGQHLT Trigger: AGTAAGGTGTTGTCCAAACAAAGCAGCAGAAGATGT...GACTACAGAGAAATGGGCTCGGTTTTTAAGGGTTCTGTTAATGTCACAATTTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR-3UTR CAA 90 bp | TCAAATTGTGACATTAACAGAACCCTTAAAAACCGAGCCCATTTCTCTGTAGTCCATGACTTCCCCTTATaGAAGGATGACTTTACCTTA | + |
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Preference number: 3 (lower is better) Translates to: SNCDINRTLKNRAHFSVVHDFPL*KDDFTL Trigger: TAAGGTAAAGTCATCCTTCAATAAGGGGAAGTCATG...GACTACAGAGAAATGGGCTCGGTTTTTAAGGGTTCTGTTAATGTCACAATTTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR TCA 72 bp | AAGCAAATGTATTTTCTCCAATCTGTTAACCACCATTaGACGATTGCTACCTCATTGGTAACTATGATTTCT | + |
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Preference number: 3 (lower is better) Translates to: KQMYFLQSVNHH*TIATSLVTMIS Trigger: AGAAATCATAGTTACCAATGAGGTAGCAATCGTTCAATGGTGGTTAACAGATTGGAGAAAATACATTTGCTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR CAA 72 bp | CTACCAATCCTCACAGCACCTTGCACATCTGCATGCTaGCTACCATGCCAATTACTGAACTATTGTCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: LPILTAPCTSAC*LPCQLLNYCQE Trigger: CTCCTGACAATAGTTCAGTAATTGGCATGGTAGCAAGCATGCAGATGTGCAAGGTGCTGTGAGGATTGGTAG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR CAA 72 bp | AAACTGAATACTCAGGCTACCAATCCTCACAGCACCTaGCACATCTGCATGCTTGCTACCATGCCAATTACT | + |
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Preference number: 4 (lower is better) Translates to: KLNTQATNPHST*HICMLATMPIT Trigger: AGTAATTGGCATGGTAGCAAGCATGCAGATGTGCAAGGTGCTGTGAGGATTGGTAGCCTGAGTATTCAGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR CAA 72 bp | ACAAAACTGAGCTTGAGGGGTGTCTCAACTGTGACATaGACTTGTGGGAAACCAACAGTGTCATCGGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: TKLSLRGVSTVT*TCGKPTVSSVF Trigger: AAAAACCGATGACACTGTTGGTTTCCCACAAGTCAATGTCACAGTTGAGACACCCCTCAAGCTCAGTTTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR CAA 72 bp | CCTGTTTGTGATGGGTTAGGGGAGAAGACTAAACACTaGACTATCCCTACTGGTCCACACAAGAGTAAACTT | + |
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Preference number: 4 (lower is better) Translates to: PVCDGLGEKTKH*TIPTGPHKSKL Trigger: AAGTTTACTCTTGTGTGGACCAGTAGGGATAGTCAAGTGTTTAGTCTTCTCCCCTAACCCATCACAAACAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| 3UTR CAA 72 bp | ATCTGCATGCTTGCTACCATGCCAATTACTGAACTATaGTCAGGAGCGTTTCAAATTGTGACATTAACAGAA | + |
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Preference number: 4 (lower is better) Translates to: ICMLATMPITEL*SGAFQIVTLTE Trigger: TTCTGTTAATGTCACAATTTGAAACGCTCCTGACAATAGTTCAGTAATTGGCATGGTAGCAAGCATGCAGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111962.8 |
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| CDS GCA 90 bp | CTCCATAACCTCCTCTACTGCTGTAACCAGGACCACCACCATAGTTaGCACCATCACCTCCAAATCCATTATATCCACCATCACCACCTC | + |
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Preference number: 5 (lower is better) Translates to: LHNLLYCCNQDHHHS*HHHLQIHYIHHHHL Trigger: GAGGTGGTGATGGTGGATATAATGGATTTGGAGGTGATGGTGGCAACTATGGTGGTGGTCCTGGTTACAGCAGTAGAGGAGGTTATGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000090792.11 ENSMUST00000111962.8 ENSMUST00000111964.8 ENSMUST00000141974.2 ENSMUST00000164947.9 |
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