Pregenerated sensors for HMGN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003038Ensembl transcript IDs: ENSMUST00000100472.10, ENSMUST00000102553.11, ENSMUST00000105893.8, ENSMUST00000123234.8, ENSMUST00000136327.2
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTTGTGCCTTGGTGGCCACCTAGGTCAAGACCAGGATCTCTCTCCTaGGAGCCAACAGGAGCCTTCCAAAATTATCAGGGAAAGAGGTTT | + |
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Preference number: 1 (lower is better) Translates to: VVPWWPPRSRPGSLS*EPTGAFQNYQGKRF Trigger: AAACCTCTTTCCCTGATAATTTTGGAAGGCTCCTGTTGGCTCCCAGGAGAGAGATCCTGGTCTTGACCTAGGTGGCCACCAAGGCACAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000100472.10 ENSMUST00000102553.11 ENSMUST00000105893.8 |
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| 3UTR-3UTR CCA 90 bp | GAATTTATAGTTTCCCCAGACCACAAGGCATTGTTGTGCCTTGGTGGCCACCTACCAGGATCTCTCTCCTaGGAGCCAACAGGAGCCTTC | + |
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Preference number: 2 (lower is better) Translates to: EFIVSPDHKALLCLGGHLPGSLS*EPTGAF Trigger: GAAGGCTCCTGTTGGCTCCCAGGAGAGAGATCCTGG...TAGGTGGCCACCAAGGCACAACAATGCCTTGTGGTCTGGGGAAACTATAAATTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000100472.10 ENSMUST00000102553.11 ENSMUST00000105893.8 |
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| 3UTR-3UTR TCA 90 bp | CAATGGACTGGGAAACCAATTTTGGGGGCCCGGTTCCAACAGGTCTCTGGTTTTTTTGTTACTGACACATaGTCCTTCCCCCACCCAGTA | + |
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Preference number: 2 (lower is better) Translates to: QWTGKPILGARFQQVSGFFVTDT*SFPHPV Trigger: TACTGGGTGGGGGAAGGATCATGTGTCAGTAACAAA...AAAACCAGAGACCTGTTGGAACCGGGCCCCCAAAATTGGTTTCCCAGTCCATTG 50% GC, longest homopolymer 7 nt, total homopolymer stretches 21 nt. Matches the following 3 transcripts: ENSMUST00000100472.10 ENSMUST00000102553.11 ENSMUST00000105893.8 |
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| 3UTR-3UTR TCA 90 bp | TCAATGGACTGGGAAACCAATTTTGGGGGCCCGGTTCCAACAGGTCTCTGGTTTTTTGTTACTGACACATaGTCCTTCCCCCACCCAGTA | + |
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Preference number: 2 (lower is better) Translates to: SMDWETNFGGPVPTGLWFFVTDT*SFPHPV Trigger: TACTGGGTGGGGGAAGGATCATGTGTCAGTAACAAA...AAACCAGAGACCTGTTGGAACCGGGCCCCCAAAATTGGTTTCCCAGTCCATTGA 50% GC, longest homopolymer 6 nt, total homopolymer stretches 20 nt. Matches the following 3 transcripts: ENSMUST00000100472.10 ENSMUST00000102553.11 ENSMUST00000105893.8 |
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| 3UTR-3UTR TCA 90 bp | TCAATGGACTGGGAAACCAATTTTGGGGGCCCGGTTCCAACAGGTCTCTGGTTTGAGAGATTTTGTTACTaGCACATGATCCTTCCCCCA | + |
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Preference number: 2 (lower is better) Translates to: SMDWETNFGGPVPTGLWFERFCY*HMILPP Trigger: TGGGGGAAGGATCATGTGTCAGTAACAAAATCTCTC...AAACCAGAGACCTGTTGGAACCGGGCCCCCAAAATTGGTTTCCCAGTCCATTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000100472.10 ENSMUST00000102553.11 ENSMUST00000105893.8 |
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| 3UTR-3UTR TCA 90 bp | ACACTCAATGAAGTCACTGCAAAGTCCCCATCACTCAATGGACTGGGAAACCAATTTGTTACTGACACATaGTCCTTCCCCCACCCAGTA | + |
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Preference number: 2 (lower is better) Translates to: TLNEVTAKSPSLNGLGNQFVTDT*SFPHPV Trigger: TACTGGGTGGGGGAAGGATCATGTGTCAGTAACAAA...TTGGTTTCCCAGTCCATTGAGTGATGGGGACTTTGCAGTGACTTCATTGAGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000100472.10 ENSMUST00000102553.11 ENSMUST00000105893.8 |
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| 3UTR-3UTR TCA 90 bp | GAATTTATAGTTTCCCCAGACCACAAGGCATTGTTGTGCCTTGGTGGCCACCTAGAGAGATTTTGTTACTaGCACATGATCCTTCCCCCA | + |
|
Preference number: 2 (lower is better) Translates to: EFIVSPDHKALLCLGGHLERFCY*HMILPP Trigger: TGGGGGAAGGATCATGTGTCAGTAACAAAATCTCTC...TAGGTGGCCACCAAGGCACAACAATGCCTTGTGGTCTGGGGAAACTATAAATTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000100472.10 ENSMUST00000102553.11 ENSMUST00000105893.8 |
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| 3UTR CAA 90 bp | AGAGGATATAAAAGTGAATTTATAGTTTCCCCAGACCACAAGGCATaGTTGTGCCTTGGTGGCCACCTAGGTCAAGACCAGGATCTCTCT | + |
|
Preference number: 2 (lower is better) Translates to: RGYKSEFIVSPDHKA*LCLGGHLGQDQDLS Trigger: AGAGAGATCCTGGTCTTGACCTAGGTGGCCACCAAGGCACAACAATGCCTTGTGGTCTGGGGAAACTATAAATTCACTTTTATATCCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000100472.10 ENSMUST00000102553.11 ENSMUST00000105893.8 |
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| 3UTR-3UTR CAA 90 bp | ACACTCAATGAAGTCACTGCAAAGTCCCCATCACTCAATGGACTGGGAAACCAAGACCACAAGGCATTGTaGTGCCTTGGTGGCCACCTA | + |
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Preference number: 3 (lower is better) Translates to: TLNEVTAKSPSLNGLGNQDHKAL*CLGGHL Trigger: TAGGTGGCCACCAAGGCACAACAATGCCTTGTGGTC...TTGGTTTCCCAGTCCATTGAGTGATGGGGACTTTGCAGTGACTTCATTGAGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000100472.10 ENSMUST00000102553.11 ENSMUST00000105893.8 |
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| 3UTR-3UTR CAA 90 bp | TCAATGGACTGGGAAACCAATTTTGGGGGCCCGGTTCCAACAGGTCTCTGGTTTTGTCCTCAATCCAGCTaGGGAGAGATTTTGTTACTG | + |
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Preference number: 3 (lower is better) Translates to: SMDWETNFGGPVPTGLWFCPQSS*GEILLL Trigger: CAGTAACAAAATCTCTCCCAAGCTGGATTGAGGACA...AAACCAGAGACCTGTTGGAACCGGGCCCCCAAAATTGGTTTCCCAGTCCATTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000100472.10 ENSMUST00000102553.11 ENSMUST00000105893.8 |
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| 3UTR-3UTR CAA 90 bp | GAATTTATAGTTTCCCCAGACCACAAGGCATTGTTGTGCCTTGGTGGCCACCTATGTCCTCAATCCAGCTaGGGAGAGATTTTGTTACTG | + |
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Preference number: 3 (lower is better) Translates to: EFIVSPDHKALLCLGGHLCPQSS*GEILLL Trigger: CAGTAACAAAATCTCTCCCAAGCTGGATTGAGGACA...TAGGTGGCCACCAAGGCACAACAATGCCTTGTGGTCTGGGGAAACTATAAATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000100472.10 ENSMUST00000102553.11 ENSMUST00000105893.8 |
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| 3UTR-3UTR CAA 90 bp | ACACTCAATGAAGTCACTGCAAAGTCCCCATCACTCAATGGACTGGGAAACCAATGTCCTCAATCCAGCTaGGGAGAGATTTTGTTACTG | + |
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Preference number: 3 (lower is better) Translates to: TLNEVTAKSPSLNGLGNQCPQSS*GEILLL Trigger: CAGTAACAAAATCTCTCCCAAGCTGGATTGAGGACA...TTGGTTTCCCAGTCCATTGAGTGATGGGGACTTTGCAGTGACTTCATTGAGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000100472.10 ENSMUST00000102553.11 ENSMUST00000105893.8 |
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| 3UTR CCA 72 bp | TATGTACACCAAAATTTATCTGCTCATAGTATTATATaGAATCATCTTGTTTCCGGGCTAAAATCCAGGTCT | + |
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Preference number: 3 (lower is better) Translates to: YVHQNLSAHSII*NHLVSGLKSRS Trigger: AGACCTGGATTTTAGCCCGGAAACAAGATGATTCCATATAATACTATGAGCAGATAAATTTTGGTGTACATA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136327.2 |
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| CDS-3UTR CCA 90 bp | TTAAAACTCTATGGTACCAGCATGAGTGACCTATCAGGACAAGCTTTAGGTTATAACAGCCACTCTACCTaGTCTGTTTTGGCATCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LKLYGTSMSDLSGQALGYNSHST*SVLASP Trigger: TGGAGATGCCAAAACAGACCAGGTAGAGTGGCTGTT...ATAACCTAAAGCTTGTCCTGATAGGTCACTCATGCTGGTACCATAGAGTTTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136327.2 |
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| CDS CCA 72 bp | CCTTTAGCATCCCCTTCAGCGGAAGACCGGGCAGGCTaGCCGCAGAGCGCGGGAGAAGCTGGAGCCTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: PLASPSAEDRAG*PQSAGEAGAWP Trigger: GGGCCAGGCTCCAGCTTCTCCCGCGCTCTGCGGCCAGCCTGCCCGGTCTTCCGCTGAAGGGGATGCTAAAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123234.8 |
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