Pregenerated sensors for HMGB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054717Ensembl transcript IDs: ENSMUST00000067925.8
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCCTCCTGCCCTCTCTCTACCTTCCACTCTGGGATTGCATGTACCTaGCACCACACCCAGCCTGGTATAACTACTTTCAACATCTACACA | + |
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Preference number: 1 (lower is better) Translates to: PSCPLSTFHSGIACT*HHTQPGITTFNIYT Trigger: TGTGTAGATGTTGAAAGTAGTTATACCAGGCTGGGTGTGGTGGCAGGTACATGCAATCCCAGAGTGGAAGGTAGAGAGAGGGCAGGAGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| 3UTR TCA 90 bp | AAACTTCAAGTACAGGTTTGGGAGAAAATAGCAAAGGCATTCAAGTaGGCTCAGAGGTACAGCACTTGCCTGGCATGCATAAGGCTCTGG | + |
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Preference number: 1 (lower is better) Translates to: KLQVQVWEKIAKAFK*AQRYSTCLACIRLW Trigger: CCAGAGCCTTATGCATGCCAGGCAAGTGCTGTACCTCTGAGCTCACTTGAATGCCTTTGCTATTTTCTCCCAAACCTGTACTTGAAGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| 3UTR CCA 90 bp | TACCTTCCACTCTGGGATTGCATGTACCTGCCACCACACCCAGCCTaGTATAACTACTTTCAACATCTACACAAGTTTCCCAACACATTT | + |
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Preference number: 1 (lower is better) Translates to: YLPLWDCMYLPPHPA*YNYFQHLHKFPNTF Trigger: AAATGTGTTGGGAAACTTGTGTAGATGTTGAAAGTAGTTATACCAGGCTGGGTGTGGTGGCAGGTACATGCAATCCCAGAGTGGAAGGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| 3UTR CAA 90 bp | GGAGAAAATAGCAAAGGCATTCAAGTGAGCTCAGAGGTACAGCACTaGCCTGGCATGCATAAGGCTCTGGGTTCTATCTCCAGCATTGTC | + |
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Preference number: 2 (lower is better) Translates to: GENSKGIQVSSEVQH*PGMHKALGSISSIV Trigger: GACAATGCTGGAGATAGAACCCAGAGCCTTATGCATGCCAGGCAAGTGCTGTACCTCTGAGCTCACTTGAATGCCTTTGCTATTTTCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| 3UTR-3UTR CCA 90 bp | AAAGACAGTGATGCCAAGAACTTCTGTGTAGCCTTGGCCATCTTAGAACTCTGTCCACCACACCCAGCCTaGTATAACTACTTTCAACAT | + |
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Preference number: 2 (lower is better) Translates to: KDSDAKNFCVALAILELCPPHPA*YNYFQH Trigger: ATGTTGAAAGTAGTTATACCAGGCTGGGTGTGGTGG...ACAGAGTTCTAAGATGGCCAAGGCTACACAGAAGTTCTTGGCATCACTGTCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| 3UTR-3UTR TCA 90 bp | AAAGACAGTGATGCCAAGAACTTCTGTGTAGCCTTGGCCATCTTAGAACTCTGTTGTAGTTGTAGCCCCTaGAAAAGCTACAAACTCTTC | + |
|
Preference number: 2 (lower is better) Translates to: KDSDAKNFCVALAILELCCSCSP*KSYKLF Trigger: GAAGAGTTTGTAGCTTTTTCAGGGGCTACAACTACA...ACAGAGTTCTAAGATGGCCAAGGCTACACAGAAGTTCTTGGCATCACTGTCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| 3UTR-3UTR CCA 90 bp | AGACAGGCTGGCCTCAGGAAATCTGTTGAGATTTTTAGGGAACTAGTTAAATTAAAGCATGTACTTTGGTaGTGGTGTCCTAACTCCAAC | + |
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Preference number: 2 (lower is better) Translates to: RQAGLRKSVEIFRELVKLKHVLW*WCPNSN Trigger: GTTGGAGTTAGGACACCACCACCAAAGTACATGCTT...TAATTTAACTAGTTCCCTAAAAATCTCAACAGATTTCCTGAGGCCAGCCTGTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| 3UTR-3UTR TCA 90 bp | AGACAGGCTGGCCTCAGGAAATCTGTTGAGATTTTTAGGGAACTAGTTAAATTAAGCAAAATAATTGCCTaGGCAAATATACTCCACACT | + |
|
Preference number: 2 (lower is better) Translates to: RQAGLRKSVEIFRELVKLSKIIA*ANILHT Trigger: AGTGTGGAGTATATTTGCTCAGGCAATTATTTTGCT...TAATTTAACTAGTTCCCTAAAAATCTCAACAGATTTCCTGAGGCCAGCCTGTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| 3UTR GCA 72 bp | CCTCTCTCTACCTTCCACTCTGGGATTGCATGTACCTaGCACCACACCCAGCCTGGTATAACTACTTTCAAC | + |
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Preference number: 3 (lower is better) Translates to: PLSTFHSGIACT*HHTQPGITTFN Trigger: GTTGAAAGTAGTTATACCAGGCTGGGTGTGGTGGCAGGTACATGCAATCCCAGAGTGGAAGGTAGAGAGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| 3UTR CCA 72 bp | CAGAGGTACAGCACTTGCCTGGCATGCATAAGGCTCTaGGTTCTATCTCCAGCATTGTCAGAAACAAAAAGT | + |
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Preference number: 3 (lower is better) Translates to: QRYSTCLACIRL*VLSPALSETKS Trigger: ACTTTTTGTTTCTGACAATGCTGGAGATAGAACCCAGAGCCTTATGCATGCCAGGCAAGTGCTGTACCTCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| 3UTR TCA 72 bp | CTTAAAAGTTGGGTAGGCTGCTATCAAGAAAGACAGTaGTGCCAAGAACTTCTGTGTAGCCTTGGCCATCTT | + |
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Preference number: 3 (lower is better) Translates to: LKSWVGCYQERQ*CQELLCSLGHL Trigger: AAGATGGCCAAGGCTACACAGAAGTTCTTGGCATCACTGTCTTTCTTGATAGCAGCCTACCCAACTTTTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| CDS-3UTR GCA 90 bp | CCTCCTGCCCTCTCTCTACCTTCCACTCTGGGATTGCATGTACCTGCCACCACAGGATGCTTCTTCTTGTaGTCCTCGCGGCAGGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: PPALSLPSTLGLHVPATTGCFFL*SSRQVC Trigger: GCAGACCTGCCGCGAGGAGCACAAGAAGAAGCATCC...TGTGGTGGCAGGTACATGCAATCCCAGAGTGGAAGGTAGAGAGAGGGCAGGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| CDS-3UTR CCA 90 bp | CCTCCTGCCCTCTCTCTACCTTCCACTCTGGGATTGCATGTACCTGCCACCACATCCAATAGACAGGCCTaGGTGTTCAATTTTGATCTT | + |
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Preference number: 4 (lower is better) Translates to: PPALSLPSTLGLHVPATTSNRQA*VFNFDL Trigger: AAGATCAAAATTGAACACCCAGGCCTGTCTATTGGA...TGTGGTGGCAGGTACATGCAATCCCAGAGTGGAAGGTAGAGAGAGGGCAGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| CDS-3UTR GCA 90 bp | AGACAGGCTGGCCTCAGGAAATCTGTTGAGATTTTTAGGGAACTAGTTAAATTATCCTCGCGGCAGGTCTaGACGAAGAAGGCGTACGAG | + |
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Preference number: 4 (lower is better) Translates to: RQAGLRKSVEIFRELVKLSSRQV*TKKAYE Trigger: CTCGTACGCCTTCTTCGTGCAGACCTGCCGCGAGGA...TAATTTAACTAGTTCCCTAAAAATCTCAACAGATTTCCTGAGGCCAGCCTGTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| 3UTR CAA 72 bp | CTGGCATGCATAAGGCTCTGGGTTCTATCTCCAGCATaGTCAGAAACAAAAAGTAAAGGTTTAAGCCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: LACIRLWVLSPA*SETKSKGLSQA Trigger: TGCCTGGCTTAAACCTTTACTTTTTGTTTCTGACAATGCTGGAGATAGAACCCAGAGCCTTATGCATGCCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| CDS-3UTR TCA 90 bp | AGACAGGCTGGCCTCAGGAAATCTGTTGAGATTTTTAGGGAACTAGTTAAATTATTCGTTCTTCTTCTTTaGGCCTGTTGGCCTACCAGG | + |
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Preference number: 4 (lower is better) Translates to: RQAGLRKSVEIFRELVKLFVLLL*ACWPTR Trigger: CCTGGTAGGCCAACAGGCTCAAAGAAGAAGAACGAA...TAATTTAACTAGTTCCCTAAAAATCTCAACAGATTTCCTGAGGCCAGCCTGTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| CDS-3UTR CCA 90 bp | AGACAGGCTGGCCTCAGGAAATCTGTTGAGATTTTTAGGGAACTAGTTAAATTATTTCCTTTGCAGACATaGTCTTCCATCTCTCGGAGC | + |
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Preference number: 4 (lower is better) Translates to: RQAGLRKSVEIFRELVKLFPLQT*SSISRS Trigger: GCTCCGAGAGATGGAAGACCATGTCTGCAAAGGAAA...TAATTTAACTAGTTCCCTAAAAATCTCAACAGATTTCCTGAGGCCAGCCTGTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| CDS-3UTR CAA 90 bp | CCTCCTGCCCTCTCTCTACCTTCCACTCTGGGATTGCATGTACCTGCCACCACACGAGCTTTGTCGCTCTaGGCCAAATCTTCAAACTTG | + |
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Preference number: 5 (lower is better) Translates to: PPALSLPSTLGLHVPATTRALSL*AKSSNL Trigger: CAAGTTTGAAGATTTGGCCAAGAGCGACAAAGCTCG...TGTGGTGGCAGGTACATGCAATCCCAGAGTGGAAGGTAGAGAGAGGGCAGGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| CDS-3UTR CAA 90 bp | AGACAGGCTGGCCTCAGGAAATCTGTTGAGATTTTTAGGGAACTAGTTAAATTAGTTCGTTCTTCTTCTTaGAGCCTGTTGGCCTACCAG | + |
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Preference number: 5 (lower is better) Translates to: RQAGLRKSVEIFRELVKLVRSSS*SLLAYQ Trigger: CTGGTAGGCCAACAGGCTCAAAGAAGAAGAACGAAC...TAATTTAACTAGTTCCCTAAAAATCTCAACAGATTTCCTGAGGCCAGCCTGTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| CDS-3UTR CAA 90 bp | AGACAGGCTGGCCTCAGGAAATCTGTTGAGATTTTTAGGGAACTAGTTAAATTAGCCAAATCTTCAAACTaGGACTTTTCCTTTGCAGAC | + |
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Preference number: 5 (lower is better) Translates to: RQAGLRKSVEIFRELVKLAKSSN*DFSFAD Trigger: GTCTGCAAAGGAAAAGTCCAAGTTTGAAGATTTGGC...TAATTTAACTAGTTCCCTAAAAATCTCAACAGATTTCCTGAGGCCAGCCTGTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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| CDS CAA 72 bp | CCTCATCTTCTGGTTCGTTCTTCTTCTTTGAGCCTGTaGGCCTACCAGGACCCTTCTTTCCTGCTTCACTTT | + |
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Preference number: 6 (lower is better) Translates to: PHLLVRSSSLSL*AYQDPSFLLHF Trigger: AAAGTGAAGCAGGAAAGAAGGGTCCTGGTAGGCCAACAGGCTCAAAGAAGAAGAACGAACCAGAAGATGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067925.8 |
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