RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HGS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025793

Ensembl transcript IDs: ENSMUST00000106203.9, ENSMUST00000106205.9, ENSMUST00000135231.3, ENSMUST00000140862.7

Found 304 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGTGGCACCCAACACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTaGCCTGCAGAGCCCCAGTCCCGGGGAGGTCAGACGGCATCAGGA +
Preference number: 1 (lower is better)
Translates to: CGTQHSRALSREGST*PAEPQSRGGQTASG
Trigger: TCCTGATGCCGTCTGACCTCCCCGGGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTGTTGGGTGCCACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
3UTR GCA 90 bp CACCCAACACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTaGAGAGCCCCAGTCCCGGGGAGGTCAGACGGCATCAGGACTGAA +
Preference number: 1 (lower is better)
Translates to: HPTQPGTLQRRFYLP*RAPVPGRSDGIRTE
Trigger: TTCAGTCCTGATGCCGTCTGACCTCCCCGGGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTGTTGGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
3UTR CCA 90 bp CATCAGACTCCGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTaGCACCCAACACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTG +
Preference number: 1 (lower is better)
Translates to: HQTPGQAKHPHSIHL*HPTQPGTLQRRFYL
Trigger: CAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCGGAGTCTGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
3UTR CAA 90 bp CTGTGGCACCCAACACAGCCGGGCACTCTCCAGAGAAGGTTCTACTaGCCCTGCAGAGCCCCAGTCCCGGGGAGGTCAGACGGCATCAGG +
Preference number: 2 (lower is better)
Translates to: LWHPTQPGTLQRRFY*PCRAPVPGRSDGIR
Trigger: CCTGATGCCGTCTGACCTCCCCGGGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTGTTGGGTGCCACAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
3UTR-3UTR CCA 90 bp CTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACACAGCATTCACCTGTaGCACCCAACACAGCCGGGC +
Preference number: 2 (lower is better)
Translates to: LAVQEPHGSSGYQGQAWTHSIHL*HPTQPG
Trigger: GCCCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTG...TGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
3UTR-3UTR GCA 90 bp GGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCGGAAGGCCCACCCCTTaGTCACAGAAGGGACACTAC +
Preference number: 2 (lower is better)
Translates to: GTRARPGHHTVSSHQTPGGRPTP*SQKGHY
Trigger: GTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCC...GCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
3UTR GCA 72 bp CAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTaGAGAGCCCCAGTCCCGGGGAGGTCAGACGGCATC +
Preference number: 3 (lower is better)
Translates to: QPGTLQRRFYLP*RAPVPGRSDGI
Trigger: GATGCCGTCTGACCTCCCCGGGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
3UTR GCA 72 bp CAACACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTaGCCTGCAGAGCCCCAGTCCCGGGGAGGTCAGACG +
Preference number: 3 (lower is better)
Translates to: QHSRALSREGST*PAEPQSRGGQT
Trigger: CGTCTGACCTCCCCGGGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
3UTR CCA 72 bp CCGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTaGCACCCAACACAGCCGGGCACTCTCCAGAGAAGG +
Preference number: 3 (lower is better)
Translates to: PGQAKHPHSIHL*HPTQPGTLQRR
Trigger: CCTTCTCTGGAGAGTGCCCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
3UTR-3UTR CAA 90 bp CAACACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGGGGAAGGCCCACCCCTaGCTCACAGAAGGGACACTA +
Preference number: 3 (lower is better)
Translates to: QHSRALSREGSTCPAEPQGKAHP*LTEGTL
Trigger: TAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCC...CTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTGTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
3UTR-3UTR CAA 90 bp GGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCGGGAAGGCCCACCCCTaGCTCACAGAAGGGACACTA +
Preference number: 3 (lower is better)
Translates to: GTRARPGHHTVSSHQTPGGKAHP*LTEGTL
Trigger: TAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCC...GCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
3UTR CCA 72 bp TTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTaGGTACCAGGGCCAGGCCTGGACACCACACAGTTA +
Preference number: 3 (lower is better)
Translates to: FYPCCAGATWFF*VPGPGLDTTQL
Trigger: TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
3UTR GCA 72 bp GGGAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTaGAGGAGCCACATGGTTCTTCTGGGTACCAGGGCC +
Preference number: 3 (lower is better)
Translates to: GRQRYLKLLPLL*RSHMVLLGTRA
Trigger: GGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGGCACAGGGGGTTGCTGCTaGGGAGGGCCGGTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: GQAKHPHSIHLWHPTQPGTGGCC*GGPVLG
Trigger: CCCCAGCACCGGCCCTCCCCAGCAGCAACCCCCTGT...GCCCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp AGGGCCAAGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCAGCTGAGGGGCTGCCTGTaGCCCAGGGGCACCTGTTGG +
Preference number: 4 (lower is better)
Translates to: RAKGEGPPLAHRRDTTGQLRGCL*PRGTCW
Trigger: CCAACAGGTGCCCCTGGGGCACAGGCAGCCCCTCAG...CTGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCTTGGCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCACAGGGGGTTGCTGCTaGGGAGGGCCGGTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: HSRALSREGSTCPAEPQSTGGCC*GGPVLG
Trigger: CCCCAGCACCGGCCCTCCCCAGCAGCAACCCCCTGT...GGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp AGGGCCAAGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCAGGGCAGAGACGCATCCTaGCCGGGAAGGGCGGTCATG +
Preference number: 4 (lower is better)
Translates to: RAKGEGPPLAHRRDTTGQGRDAS*PGRAVM
Trigger: CATGACCGCCCTTCCCGGGCAGGATGCGTCTCTGCC...CTGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCTTGGCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGGGCAGAGACGCATCCTaGCCGGGAAGGGCGGTCATG +
Preference number: 4 (lower is better)
Translates to: RARLSIPTAFTCGTQHSRGRDAS*PGRAVM
Trigger: CATGACCGCCCTTCCCGGGCAGGATGCGTCTCTGCC...CCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTGCTGGGGAGGGCCGGTaGTGGGGGCCATCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: QEPHGSSGYQGQAWTPHSAGEGR*WGPSAG
Trigger: ACCAGCAGATGGCCCCCAGCACCGGCCCTCCCCAGC...ACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp AGGGCCAAGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCAGGGCCTCACTGCCCTGTaGTGGCGGTCCCTGTGTAGG +
Preference number: 4 (lower is better)
Translates to: RAKGEGPPLAHRRDTTGQGLTAL*WRSLCR
Trigger: CCTACACAGGGACCGCCAGCACAGGGCAGTGAGGCC...CTGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCTTGGCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGGTAGGGCTGCTGGGCTaGCAGAGACGCATCCTGCCC +
Preference number: 4 (lower is better)
Translates to: RARLSIPTAFTCGTQHSRVGLLG*QRRILP
Trigger: GGGCAGGATGCGTCTCTGCCAGCCCAGCAGCCCTAC...CCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCCAGGGGCTGCTGCCCTaGGATGTAGGGCTGCTGGGC +
Preference number: 4 (lower is better)
Translates to: HSRALSREGSTCPAEPQSQGLLP*DVGLLG
Trigger: GCCCAGCAGCCCTACATCCCAGGGCAGCAGCCCCTG...GGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GAGGGCCAAGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCACTGGGGGCCATCTGCTaGTACAGGGGCTGCTGCCCT +
Preference number: 4 (lower is better)
Translates to: EGQGGRPTPCSQKGHYRALGAIC*YRGCCP
Trigger: AGGGCAGCAGCCCCTGTACCAGCAGATGGCCCCCAG...TGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCTTGGCCCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CCCCAGTCCCGGGGAGGTCAGACGGCATCAGGACTGAAGCAGGGAACCAGTGATGGGGAGGGCCGGTGCTaGGGGCCATCTGCTGGTACA +
Preference number: 4 (lower is better)
Translates to: PQSRGGQTASGLKQGTSDGEGRC*GPSAGT
Trigger: TGTACCAGCAGATGGCCCCCAGCACCGGCCCTCCCC...ATCACTGGTTCCCTGCTTCAGTCCTGATGCCGTCTGACCTCCCCGGGACTGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp CCCCAGTCCCGGGGAGGTCAGACGGCATCAGGACTGAAGCAGGGAACCAGTGATCGCTTTGGGGGCAGCTaGGACTGCTGTGACAGGGGG +
Preference number: 4 (lower is better)
Translates to: PQSRGGQTASGLKQGTSDRFGGS*DCCDRG
Trigger: CCCCCTGTCACAGCAGTCTCAGCTGCCCCCAAAGCG...ATCACTGGTTCCCTGCTTCAGTCCTGATGCCGTCTGACCTCCCCGGGACTGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp CGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGGGTCTGTGGAGGCTGTaGGATGGCTGGGAGGCTCTG +
Preference number: 4 (lower is better)
Translates to: RARLSIPTAFTCGTQHSRGLWRL*DGWEAL
Trigger: CAGAGCCTCCCAGCCATCTCACAGCCTCCACAGACC...CCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCCGGGGAGGTCTCAGCCTCCTCAGCTaGCCGGCGCAGCTTCTCCCT +
Preference number: 4 (lower is better)
Translates to: ALSREGSTCPAEPQSRGGLSLLS*PAQLLP
Trigger: AGGGAGAAGCTGCGCCGGGCAGCTGAGGAGGCTGAG...ACCTCCCCGGGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTCAGGGGCTGCTGCCCTaGGATGTAGGGCTGCTGGGC +
Preference number: 4 (lower is better)
Translates to: QEPHGSSGYQGQAWTPHSQGLLP*DVGLLG
Trigger: GCCCAGCAGCCCTACATCCCAGGGCAGCAGCCCCTG...ACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCCGGGGAGGTTCCCTGTGTAGGCGCTaGCTGGGCCACAGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: ALSREGSTCPAEPQSRGGSLCRR*LGHRGL
Trigger: CAACCCCCTGTGGCCCAGCCAGCGCCTACACAGGGA...ACCTCCCCGGGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp GAGGGCCAAGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCAGCTTGTGTGTCCCCCTaGCGGATCAGGTCGCAGATC +
Preference number: 4 (lower is better)
Translates to: EGQGGRPTPCSQKGHYRAACVSP*RIRSQI
Trigger: GATCTGCGACCTGATCCGTCAGGGGGACACACAAGC...TGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCTTGGCCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp AGGGCCAAGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCAGATACAGGCTGCCAGCTaGGGGCGCAGAGGAAGCCAA +
Preference number: 4 (lower is better)
Translates to: RAKGEGPPLAHRRDTTGQIQAAS*GRRGSQ
Trigger: TTGGCTTCCTCTGCGCCCCCAGCTGGCAGCCTGTAT...CTGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCTTGGCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGGCCTGCGCTCATCCAGCTaGTTGAGCAGCTCGAGCAGC +
Preference number: 4 (lower is better)
Translates to: GQAKHPHSIHLWHPTQPGLRSSS*LSSSSS
Trigger: GCTGCTCGAGCTGCTCAACCAGCTGGATGAGCGCAG...GCCCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGGGAAAGGCAGGCATCTaGGCGCGCATCTGGACAGTC +
Preference number: 4 (lower is better)
Translates to: RARLSIPTAFTCGTQHSRGKAGI*ARIWTV
Trigger: GACTGTCCAGATGCGCGCCCAGATGCCTGCCTTTCC...CCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCAGGTGGCAGGGAAGCTaGTTGGGCCTGAGGGCTGGT +
Preference number: 4 (lower is better)
Translates to: HSRALSREGSTCPAEPQSRWQGS*LGLRAG
Trigger: ACCAGCCCTCAGGCCCAACCAGCTTCCCTGCCACCT...GGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GAGGGCCAAGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCAGCCAGTGGCTGGGGCTaGCTGGCTCATATACACACC +
Preference number: 4 (lower is better)
Translates to: EGQGGRPTPCSQKGHYRAASGWG*LAHIHT
Trigger: GGTGTGTATATGAGCCAGCCAGCCCCAGCCACTGGC...TGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCTTGGCCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTGGCTGGGAGGCTCTGTaGGGCCTGAGAAGCCACGCT +
Preference number: 4 (lower is better)
Translates to: QEPHGSSGYQGQAWTPHSGWEAL*GLRSHA
Trigger: AGCGTGGCTTCTCAGGCCCCACAGAGCCTCCCAGCC...ACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CATCAGACTCCGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAGGCTGGGAGGCTCTGTaGGGCCTGAGAAGCCACGCT +
Preference number: 4 (lower is better)
Translates to: HQTPGQAKHPHSIHLWHPGWEAL*GLRSHA
Trigger: AGCGTGGCTTCTCAGGCCCCACAGAGCCTCCCAGCC...TGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCGGAGTCTGATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGTAGGGCTGCTGGGCTaGCAGAGACGCATCCTGCCC +
Preference number: 4 (lower is better)
Translates to: YPCCAGATWFFWVPGPGLVGLLG*QRRILP
Trigger: GGGCAGGATGCGTCTCTGCCAGCCCAGCAGCCCTAC...CAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACTCACTGCCCTGTGCTaGCGGTCCCTGTGTAGGCGC +
Preference number: 4 (lower is better)
Translates to: LAVQEPHGSSGYQGQAWTLTALC*RSLCRR
Trigger: GCGCCTACACAGGGACCGCCAGCACAGGGCAGTGAG...TGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp TACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGCTCATCCAGCTGGTTaGGCAGCTCGAGCAGCTGCG +
Preference number: 4 (lower is better)
Translates to: YPCCAGATWFFWVPGPGLAHPAG*AARAAA
Trigger: CGCAGCTGCTCGAGCTGCTCAACCAGCTGGATGAGC...CAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp CAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTGCTCATCCAGCTGGTTaGGCAGCTCGAGCAGCTGCG +
Preference number: 4 (lower is better)
Translates to: QEPHGSSGYQGQAWTPHSAHPAG*AARAAA
Trigger: CGCAGCTGCTCGAGCTGCTCAACCAGCTGGATGAGC...ACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGGAGGAGCCTCTGCCATaGTGTTGGGGGCTGTATGTC +
Preference number: 4 (lower is better)
Translates to: RARLSIPTAFTCGTQHSREEPLP*CWGLYV
Trigger: GACATACAGCCCCCAACAGCATGGCAGAGGCTCCTC...CCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GAGGGCCAAGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCAGGCGTCACGTATCTGTaGCAGCTTGTCCTGAAGGCC +
Preference number: 4 (lower is better)
Translates to: EGQGGRPTPCSQKGHYRAGVTYL*QLVLKA
Trigger: GGCCTTCAGGACAAGCTGGCACAGATACGTGACGCC...TGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCTTGGCCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTACTCAGCCTCCTCAGCTaGCCGGCGCAGCTTCTCCCT +
Preference number: 4 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLLSLLS*PAQLLP
Trigger: AGGGAGAAGCTGCGCCGGGCAGCTGAGGAGGCTGAG...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTCTGTTGTGCCAGGCATaGTGGGGTAGGGGCCAGTGG +
Preference number: 4 (lower is better)
Translates to: QEPHGSSGYQGQAWTPHSLLCQA*WGRGQW
Trigger: CCACTGGCCCCTACCCCAGCATGCCTGGCACAACAG...ACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCCAGGCTAAGCATCCCCTGAGGGGCTGCCTGTaGCCCAGGGGCACCTGTTGG +
Preference number: 4 (lower is better)
Translates to: PGHHTVSSHQTPGQAKHPLRGCL*PRGTCW
Trigger: CCAACAGGTGCCCCTGGGGCACAGGCAGCCCCTCAG...GGGATGCTTAGCCTGGCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CAACACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGGCTGTGACAGGGGGCTaGTCAGGTACTCTGGGGGCA +
Preference number: 4 (lower is better)
Translates to: QHSRALSREGSTCPAEPQAVTGG*SGTLGA
Trigger: TGCCCCCAGAGTACCTGACCAGCCCCCTGTCACAGC...CTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTGTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp AGTGATAGGAGCCAGACCACCGAGGACAGGGAAGAGGGCCAAGGGGGAAGGCCCAGGAAGCCAAGGGCGTaGGCTCTGCCTTTGGATGTG +
Preference number: 4 (lower is better)
Translates to: SDRSQTTEDREEGQGGRPRKPRA*ALPLDV
Trigger: CACATCCAAAGGCAGAGCCCACGCCCTTGGCTTCCT...GGGCCTTCCCCCTTGGCCCTCTTCCCTGTCCTCGGTGGTCTGGCTCCTATCACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCATACAGGCTGCCAGCTaGGGGCGCAGAGGAAGCCAA +
Preference number: 4 (lower is better)
Translates to: HSRALSREGSTCPAEPQSIQAAS*GRRGSQ
Trigger: TTGGCTTCCTCTGCGCCCCCAGCTGGCAGCCTGTAT...GGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTGGGCACAGGTGCAGATaGTGTGGGGCTCTTCCGTGC +
Preference number: 4 (lower is better)
Translates to: QEPHGSSGYQGQAWTPHSGHRCR*CGALPC
Trigger: GCACGGAAGAGCCCCACACCATCTGCACCTGTGCCC...ACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGGCGTAGCCCATGGACATTaGCTGGCTCCCCATGTAGCC +
Preference number: 4 (lower is better)
Translates to: GQAKHPHSIHLWHPTQPGVAHGH*LAPHVA
Trigger: GGCTACATGGGGAGCCAGCCAATGTCCATGGGCTAC...GCCCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTACTGGGGGCCATCTGCTaGTACAGGGGCTGCTGCCCT +
Preference number: 4 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLLGAIC*YRGCCP
Trigger: AGGGCAGCAGCCCCTGTACCAGCAGATGGCCCCCAG...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp CTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGCTTGTGTGTCCCCCTaGCGGATCAGGTCGCAGATC +
Preference number: 4 (lower is better)
Translates to: LPLLCRSHMVLLGTRARPACVSP*RIRSQI
Trigger: GATCTGCGACCTGATCCGTCAGGGGGACACACAAGC...AGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp CTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACAGCTGAGACTGCTGTaGCAGGGGGCTGGTCAGGTA +
Preference number: 4 (lower is better)
Translates to: LAVQEPHGSSGYQGQAWTQLRLL*QGAGQV
Trigger: TACCTGACCAGCCCCCTGTCACAGCAGTCTCAGCTG...TGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp AGGGCCAAGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCAGGATGGACTGGAAGAGTaGCAGCACAGCCGAGTCGTT +
Preference number: 4 (lower is better)
Translates to: RAKGEGPPLAHRRDTTGQDGLEE*QHSRVV
Trigger: AACGACTCGGCTGTGCTGTCACTCTTCCAGTCCATC...CTGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCTTGGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp GGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGGCGCGGGTGCATGGTGTTaGTGGACTGGAAGAGTGACA +
Preference number: 4 (lower is better)
Translates to: GQAKHPHSIHLWHPTQPGAGAWC*WTGRVT
Trigger: TGTCACTCTTCCAGTCCATCAACACCATGCACCCGC...GCCCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp CTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACAGAAGCTGGTTGGGCCTaGGGGCTGGTAGAGTACACC +
Preference number: 4 (lower is better)
Translates to: LAVQEPHGSSGYQGQAWTEAGWA*GLVEYT
Trigger: GGTGTACTCTACCAGCCCTCAGGCCCAACCAGCTTC...TGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCCGGGGAGGTTGTCAGGGGCACAGGTaGAGATGGTGTGGGGCTCTT +
Preference number: 4 (lower is better)
Translates to: ALSREGSTCPAEPQSRGGCQGHR*RWCGAL
Trigger: AAGAGCCCCACACCATCTGCACCTGTGCCCCTGACA...ACCTCCCCGGGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGGCTCCTTCTCCTGTTCCTaGAGGCGCTGGATAGCTAGC +
Preference number: 4 (lower is better)
Translates to: GQAKHPHSIHLWHPTQPGSFSCS*RRWIAS
Trigger: GCTAGCTATCCAGCGCCTGCAGGAACAGGAGAAGGA...GCCCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCCGGGGAGGTTGGGATCTGCTGTTGTaGCAGGCATGCTGGGGTAGG +
Preference number: 4 (lower is better)
Translates to: ALSREGSTCPAEPQSRGGWDLLL*QACWGR
Trigger: CCTACCCCAGCATGCCTGGCACAACAGCAGATCCCA...ACCTCCCCGGGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGTGTCCTTCTCCAGGCTaGGCAGCAGGCTCTGTCAGG +
Preference number: 4 (lower is better)
Translates to: YPCCAGATWFFWVPGPGLCPSPG*AAGSVR
Trigger: CCTGACAGAGCCTGCTGCCCAGCCTGGAGAAGGACA...CAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp AGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCAGTAATAGGAGGTGGCAGGGAAGCTaGTTGGGCCTGAGGGCTGGT +
Preference number: 4 (lower is better)
Translates to: RGKAHPLLTEGTLQGSNRRWQGS*LGLRAG
Trigger: ACCAGCCCTCAGGCCCAACCAGCTTCCCTGCCACCT...CCTATTACTGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGTAGGGGCCAGTGGCTaGGGCTGGCTGGCTCATATA +
Preference number: 4 (lower is better)
Translates to: YPCCAGATWFFWVPGPGLVGASG*GWLAHI
Trigger: TATATGAGCCAGCCAGCCCCAGCCACTGGCCCCTAC...CAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGTAGGGGCCAGTGGCTaGGGCTGGCTGGCTCATATA +
Preference number: 4 (lower is better)
Translates to: LPLLCRSHMVLLGTRARPVGASG*GWLAHI
Trigger: TATATGAGCCAGCCAGCCCCAGCCACTGGCCCCTAC...AGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTCCCAGGGGCACCTGTTaGGTACATGTAGGCGCTGAC +
Preference number: 4 (lower is better)
Translates to: LPLLCRSHMVLLGTRARPPRGTC*VHVGAD
Trigger: GTCAGCGCCTACATGTACCCAACAGGTGCCCCTGGG...AGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCAGTAGGCAGGACTGGTaGTGGGCCCGGCCTGGGCCT +
Preference number: 4 (lower is better)
Translates to: FWVPGPGLDTTQLVHIRLSRQDW*WARPGP
Trigger: AGGCCCAGGCCGGGCCCACCACCAGTCCTGCCTACT...GAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGCTGGTAGCCTGGGGTTaGTGTGGGCTGGTAGGAGGA +
Preference number: 4 (lower is better)
Translates to: YPCCAGATWFFWVPGPGLLVAWG*CGLVGG
Trigger: TCCTCCTACCAGCCCACACCAACCCCAGGCTACCAG...CAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGGCTCAAAGGAGATGAGCTaGGCCTCACTGCCCTGTGCT +
Preference number: 4 (lower is better)
Translates to: GQAKHPHSIHLWHPTQPGSKEMS*ASLPCA
Trigger: AGCACAGGGCAGTGAGGCCCAGCTCATCTCCTTTGA...GCCCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGTCAAAGGAGATGAGCTaGGCCTCACTGCCCTGTGCT +
Preference number: 4 (lower is better)
Translates to: RARLSIPTAFTCGTQHSRSKEMS*ASLPCA
Trigger: AGCACAGGGCAGTGAGGCCCAGCTCATCTCCTTTGA...CCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp CACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCCATTCTGCAGGGCCTTaGGGAACTGCTCATGGCTCT +
Preference number: 4 (lower is better)
Translates to: HSRALSREGSTCPAEPQSHSAGP*GTAHGS
Trigger: AGAGCCATGAGCAGTTCCTCAAGGCCCTGCAGAATG...GGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAAGCTGGATCTGGCGTTaGCGCTCAGCCTCCTCAGCT +
Preference number: 4 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLSWIWR*RSASSA
Trigger: AGCTGAGGAGGCTGAGCGTCAACGCCAGATCCAGCT...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp GGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCGGTACATGTAGGCGCTaGCCATGCTGGGATCTGCTG +
Preference number: 4 (lower is better)
Translates to: GTRARPGHHTVSSHQTPGGTCRR*PCWDLL
Trigger: CAGCAGATCCCAGCATGGTCAGCGCCTACATGTACC...GCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp CAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTGGTACATGTAGGCGCTaGCCATGCTGGGATCTGCTG +
Preference number: 4 (lower is better)
Translates to: QEPHGSSGYQGQAWTPHSGTCRR*PCWDLL
Trigger: CAGCAGATCCCAGCATGGTCAGCGCCTACATGTACC...ACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CAGTCCCGGGGAGGTCAGACGGCATCAGGACTGAAGCAGGGAACCAGTGATAGGTGTCAGGGGCACAGGTaGAGATGGTGTGGGGCTCTT +
Preference number: 4 (lower is better)
Translates to: QSRGGQTASGLKQGTSDRCQGHR*RWCGAL
Trigger: AAGAGCCCCACACCATCTGCACCTGTGCCCCTGACA...CCTATCACTGGTTCCCTGCTTCAGTCCTGATGCCGTCTGACCTCCCCGGGACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTGAGGAGCCTCTGCCATaGTGTTGGGGGCTGTATGTC +
Preference number: 4 (lower is better)
Translates to: QEPHGSSGYQGQAWTPHSEEPLP*CWGLYV
Trigger: GACATACAGCCCCCAACAGCATGGCAGAGGCTCCTC...ACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTTGGAAGAGGAGCCTCTaGCATGCTGTTGGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: LPLLCRSHMVLLGTRARPWKRSL*HAVGGC
Trigger: ACAGCCCCCAACAGCATGGCAGAGGCTCCTCTTCCA...AGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp TCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCAGGGCCTTGAGGAACTaGTCATGGCTCTCCTCCGAC +
Preference number: 4 (lower is better)
Translates to: STLAVQEPHGSSGYQGQARALRN*SWLSSD
Trigger: GTCGGAGGAGAGCCATGAGCAGTTCCTCAAGGCCCT...GGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp TCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGGATCTGCTGTTGTaGCAGGCATGCTGGGGTAGG +
Preference number: 4 (lower is better)
Translates to: STLAVQEPHGSSGYQGQAWDLLL*QACWGR
Trigger: CCTACCCCAGCATGCCTGGCACAACAGCAGATCCCA...GGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GAAGGGGAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATGCTGGGGAGGGCCGGTaGTGGGGGCCATCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: EGETEIPKASTLAVQEPHAGEGR*WGPSAG
Trigger: ACCAGCAGATGGCCCCCAGCACCGGCCCTCCCCAGC...ATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTCCCCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GAGGGCCAAGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCACGAACTTGGGGATGGTaGAGTACTTGGAGGAGCACT +
Preference number: 4 (lower is better)
Translates to: EGQGGRPTPCSQKGHYRARTWGW*STWRST
Trigger: AGTGCTCCTCCAAGTACTCCACCATCCCCAAGTTCG...TGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCTTGGCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGCTGGTCAGGTACTCTaGGGGCAGCTCAGTGGTAGA +
Preference number: 4 (lower is better)
Translates to: LPLLCRSHMVLLGTRARPAGQVL*GQLSGR
Trigger: TCTACCACTGAGCTGCCCCCAGAGTACCTGACCAGC...AGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGCTGCGCTCATCCAGCTaGTTGAGCAGCTCGAGCAGC +
Preference number: 4 (lower is better)
Translates to: ASTLAVQEPHGSSGYQGQLRSSS*LSSSSS
Trigger: GCTGCTCGAGCTGCTCAACCAGCTGGATGAGCGCAG...CTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGCCAGTGGCTGGGGCTaGCTGGCTCATATACACACC +
Preference number: 4 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLASGWG*LAHIHT
Trigger: GGTGTGTATATGAGCCAGCCAGCCCCAGCCACTGGC...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp AGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCAGTAATAGGCCCAGGGGCACCTGTTaGGTACATGTAGGCGCTGAC +
Preference number: 4 (lower is better)
Translates to: RGKAHPLLTEGTLQGSNRPRGTC*VHVGAD
Trigger: GTCAGCGCCTACATGTACCCAACAGGTGCCCCTGGG...CCTATTACTGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGCTGGTAGCCTGGGGTTaGTGTGGGCTGGTAGGAGGA +
Preference number: 4 (lower is better)
Translates to: ASTLAVQEPHGSSGYQGQLVAWG*CGLVGG
Trigger: TCCTCCTACCAGCCCACACCAACCCCAGGCTACCAG...CTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCTCCCTGTGTAGGCGCTaGCTGGGCCACAGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: WFFWVPGPGLDTTQLVHISLCRR*LGHRGL
Trigger: CAACCCCCTGTGGCCCAGCCAGCGCCTACACAGGGA...GATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp CCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCCAGGCTAAGCATCCCCAGCTGAGACTGCTGTaGCAGGGGGCTGGTCAGGTA +
Preference number: 4 (lower is better)
Translates to: PGHHTVSSHQTPGQAKHPQLRLL*QGAGQV
Trigger: TACCTGACCAGCCCCCTGTCACAGCAGTCTCAGCTG...GGGATGCTTAGCCTGGCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp CGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGTGCTCTTCATGCGGTTaGCAAAAGTGCTCACGGCAT +
Preference number: 4 (lower is better)
Translates to: RARLSIPTAFTCGTQHSRCSSCG*QKCSRH
Trigger: ATGCCGTGAGCACTTTTGTCAACCGCATGAAGAGCA...CCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGCACCTCCTTCTCAATaGCGAACTTGGGGATGGTGG +
Preference number: 4 (lower is better)
Translates to: LPLLCRSHMVLLGTRARPAPPSQ*RTWGWW
Trigger: CCACCATCCCCAAGTTCGGCATTGAGAAGGAGGTGC...AGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTATGGAAGAGGAGCCTCTaGCATGCTGTTGGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLWKRSL*HAVGGC
Trigger: ACAGCCCCCAACAGCATGGCAGAGGCTCCTCTTCCA...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGGCGTCACGTATCTGTaGCAGCTTGTCCTGAAGGCC +
Preference number: 4 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLGVTYL*QLVLKA
Trigger: GGCCTTCAGGACAAGCTGGCACAGATACGTGACGCC...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCATAGCTAGCTGTCTCTaGACCTCCAGGTACTCCTGC +
Preference number: 4 (lower is better)
Translates to: HSRALSREGSTCPAEPQSIASCL*TSRYSC
Trigger: GCAGGAGTACCTGGAGGTGCAGAGACAGCTAGCTAT...GGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp TACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGCGCATCTGGACAGTCTaGTTCTGTTGCTCCAGACGC +
Preference number: 4 (lower is better)
Translates to: YPCCAGATWFFWVPGPGLRIWTV*FCCSRR
Trigger: GCGTCTGGAGCAACAGAAGCAGACTGTCCAGATGCG...CAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTCGCATCTGGACAGTCTaGTTCTGTTGCTCCAGACGC +
Preference number: 4 (lower is better)
Translates to: QEPHGSSGYQGQAWTPHSRIWTV*FCCSRR
Trigger: GCGTCTGGAGCAACAGAAGCAGACTGTCCAGATGCG...ACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp TTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCCTGTTGTGCCAGGCATaGTGGGGTAGGGGCCAGTGG +
Preference number: 4 (lower is better)
Translates to: FWVPGPGLDTTQLVHIRLLLCQA*WGRGQW
Trigger: CCACTGGCCCCTACCCCAGCATGCCTGGCACAACAG...GAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTGCCGAACTTGGGGATaGTGGAGTACTTGGAGGAGC +
Preference number: 4 (lower is better)
Translates to: QEPHGSSGYQGQAWTPHSCRTWG*WSTWRS
Trigger: GCTCCTCCAAGTACTCCACCATCCCCAAGTTCGGCA...ACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACATGCCGAACTTGGGGATaGTGGAGTACTTGGAGGAGC +
Preference number: 4 (lower is better)
Translates to: LAVQEPHGSSGYQGQAWTCRTWG*WSTWRS
Trigger: GCTCCTCCAAGTACTCCACCATCCCCAAGTTCGGCA...TGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GAGGGCCAAGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCATCTCAATGCCGAACTTaGGGATGGTGGAGTACTTGG +
Preference number: 4 (lower is better)
Translates to: EGQGGRPTPCSQKGHYRASQCRT*GWWSTW
Trigger: CCAAGTACTCCACCATCCCCAAGTTCGGCATTGAGA...TGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCTTGGCCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGCTGGTCAGGTACTCTaGGGGCAGCTCAGTGGTAGA +
Preference number: 4 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLAGQVL*GQLSGR
Trigger: TCTACCACTGAGCTGCCCCCAGAGTACCTGACCAGC...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGTGTCTCATCCCGCTTTaGGGGCAGCTGAGACTGCTG +
Preference number: 4 (lower is better)
Translates to: ASTLAVQEPHGSSGYQGQCLIPL*GQLRLL
Trigger: CAGCAGTCTCAGCTGCCCCCAAAGCGGGATGAGACA...CTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAAGGAAGCCAAGGGCGTaGGCTCTGCCTTTGGATGTG +
Preference number: 4 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLRKPRA*ALPLDV
Trigger: CACATCCAAAGGCAGAGCCCACGCCCTTGGCTTCCT...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCCAGGCTAAGCATCCCTGTCCTTCTCCAGGCTaGGCAGCAGGCTCTGTCAGG +
Preference number: 4 (lower is better)
Translates to: PGHHTVSSHQTPGQAKHPCPSPG*AAGSVR
Trigger: CCTGACAGAGCCTGCTGCCCAGCCTGGAGAAGGACA...GGGATGCTTAGCCTGGCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCCTGAGAGTCTGTCTCTaGAAGAGGAGCCTCTGCCAT +
Preference number: 4 (lower is better)
Translates to: HSRALSREGSTCPAEPQSLRVCL*KRSLCH
Trigger: ATGGCAGAGGCTCCTCTTCCAGAGACAGACTCTCAG...GGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGCGCTGCAGGGAGTTATaGGCTGAGAGTCTGTCTCTG +
Preference number: 4 (lower is better)
Translates to: YPCCAGATWFFWVPGPGLRCREL*AESLSL
Trigger: CAGAGACAGACTCTCAGCCCATAACTCCCTGCAGCG...CAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTACTGCGTCCCCGCATGTaGTTGCTCTTCATGCGGTTG +
Preference number: 4 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLLRPRM*LLFMRL
Trigger: CAACCGCATGAAGAGCAACCACATGCGGGGACGCAG...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGGCTGTAGCCTATGTTGCTaGTCTGTGGAGGCTGTGAGA +
Preference number: 4 (lower is better)
Translates to: GQAKHPHSIHLWHPTQPGCSLCC*SVEAVR
Trigger: TCTCACAGCCTCCACAGACCAGCAACATAGGCTACA...GCCCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GAGGGCCAAGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCATGTAGCCTATGTTGCTaGTCTGTGGAGGCTGTGAGA +
Preference number: 4 (lower is better)
Translates to: EGQGGRPTPCSQKGHYRACSLCC*SVEAVR
Trigger: TCTCACAGCCTCCACAGACCAGCAACATAGGCTACA...TGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCTTGGCCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp AGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCAGTAATAGGGTAGCCCATGGACATTaGCTGGCTCCCCATGTAGCC +
Preference number: 4 (lower is better)
Translates to: RGKAHPLLTEGTLQGSNRVAHGH*LAPHVA
Trigger: GGCTACATGGGGAGCCAGCCAATGTCCATGGGCTAC...CCTATTACTGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GAAGGGGAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATGGGGAGGGCCGGTGCTaGGGGCCATCTGCTGGTACA +
Preference number: 4 (lower is better)
Translates to: EGETEIPKASTLAVQEPHGEGRC*GPSAGT
Trigger: TGTACCAGCAGATGGCCCCCAGCACCGGCCCTCCCC...ATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTCCCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp TCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCCAGGGAGTTATGGGCTaGGAGTCTGTCTCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: STLAVQEPHGSSGYQGQAQGVMG*ESVSGR
Trigger: TCTTCCAGAGACAGACTCTCAGCCCATAACTCCCTG...GGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp GCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCGGGTGCATGGTGTTaGTGGACTGGAAGAGTGACA +
Preference number: 4 (lower is better)
Translates to: ASTLAVQEPHGSSGYQGQAGAWC*WTGRVT
Trigger: TGTCACTCTTCCAGTCCATCAACACCATGCACCCGC...CTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp GGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGGCGCTTCTTCTGTCTCATaGTCTCCAGTTTCTGTGCCA +
Preference number: 4 (lower is better)
Translates to: GQAKHPHSIHLWHPTQPGASSVS*SPVSVP
Trigger: TGGCACAGAAACTGGAGATCATGAGACAGAAGAAGC...GCCCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTACAGAAGCTGGCTGGTaGCTTTGTCTAGGAGACGCT +
Preference number: 4 (lower is better)
Translates to: LPLLCRSHMVLLGTRARPTEAGW*LCLGDA
Trigger: AGCGTCTCCTAGACAAAGCCACCAGCCAGCTTCTGT...AGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCGTCTCCAACAGAAGCTaGCTGGTGGCTTTGTCTAGG +
Preference number: 4 (lower is better)
Translates to: GTRARPGHHTVSSHQTPGVSNRS*LVALSR
Trigger: CCTAGACAAAGCCACCAGCCAGCTTCTGTTGGAGAC...GCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGTCTCCAACAGAAGCTaGCTGGTGGCTTTGTCTAGG +
Preference number: 4 (lower is better)
Translates to: LPLLCRSHMVLLGTRARPVSNRS*LVALSR
Trigger: CCTAGACAAAGCCACCAGCCAGCTTCTGTTGGAGAC...AGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCGCATGTGCCCAGGCCTaGATCAGGTACAAGATCTTG +
Preference number: 4 (lower is better)
Translates to: STLAVQEPHGSSGYQGQAACAQA*IRYKIL
Trigger: CAAGATCTTGTACCTGATCCAGGCCTGGGCACATGC...GGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTGCATGTGCCCAGGCCTaGATCAGGTACAAGATCTTG +
Preference number: 4 (lower is better)
Translates to: QEPHGSSGYQGQAWTPHSACAQA*IRYKIL
Trigger: CAAGATCTTGTACCTGATCCAGGCCTGGGCACATGC...ACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CATCAGACTCCGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAGGACCACCTTGTACTTaGGTTCGTTCCGGAAGGCAT +
Preference number: 4 (lower is better)
Translates to: HQTPGQAKHPHSIHLWHPGPPCT*VRSGRH
Trigger: ATGCCTTCCGGAACGAACCCAAGTACAAGGTGGTCC...TGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCGGAGTCTGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGGACCACCTTGTACTTaGGTTCGTTCCGGAAGGCAT +
Preference number: 4 (lower is better)
Translates to: YPCCAGATWFFWVPGPGLGPPCT*VRSGRH
Trigger: ATGCCTTCCGGAACGAACCCAAGTACAAGGTGGTCC...CAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTTGTACTCTGCACCGATaGCATTCCTCAGCATCCACC +
Preference number: 4 (lower is better)
Translates to: LPLLCRSHMVLLGTRARPCTLHR*HSSAST
Trigger: GGTGGATGCTGAGGAATGCCATCGGTGCAGAGTACA...AGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTAGTAGGCAGGACTGGTaGTGGGCCCGGCCTGGGCCT +
Preference number: 4 (lower is better)
Translates to: ETEIPKASTLAVQEPHGSSRQDW*WARPGP
Trigger: AGGCCCAGGCCGGGCCCACCACCAGTCCTGCCTACT...AGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp AGTGATAGGAGCCAGACCACCGAGGACAGGGAAGAGGGCCAAGGGGGAAGGCCCGTTTACAGCATATTTTaGTTGTGTGTCCCCCTGACG +
Preference number: 4 (lower is better)
Translates to: SDRSQTTEDREEGQGGRPVYSIF*LCVPLT
Trigger: CGTCAGGGGGACACACAAGCAAAATATGCTGTAAAC...GGGCCTTCCCCCTTGGCCCTCTTCCCTGTCCTCGGTGGTCTGGCTCCTATCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGGCACATTAACTTCCACTTaGCTCTTCAGCAGCTCCTTC +
Preference number: 4 (lower is better)
Translates to: GQAKHPHSIHLWHPTQPGTLTST*LFSSSF
Trigger: GAAGGAGCTGCTGAAGAGGCAAGTGGAAGTTAATGT...GCCCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGGAAGCCTTCCCTTCTaGCTTCTTGTTCAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: ASTLAVQEPHGSSGYQGQGSLPF*LLVQLL
Trigger: GAGCAGCTGAACAAGAAGGCAGAAGGGAAGGCTTCC...CTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp TGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGGGCCTTGAGGAACTaGTCATGGCTCTCCTCCGAC +
Preference number: 4 (lower is better)
Translates to: WFFWVPGPGLDTTQLVHIRALRN*SWLSSD
Trigger: GTCGGAGGAGAGCCATGAGCAGTTCCTCAAGGCCCT...GATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTGGCCTCACTGCCCTGTaGTGGCGGTCCCTGTGTAGG +
Preference number: 4 (lower is better)
Translates to: ETEIPKASTLAVQEPHGSGLTAL*WRSLCR
Trigger: CCTACACAGGGACCGCCAGCACAGGGCAGTGAGGCC...AGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTACGAACTTGGGGATGGTaGAGTACTTGGAGGAGCACT +
Preference number: 4 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLRTWGW*STWRST
Trigger: AGTGCTCCTCCAAGTACTCCACCATCCCCAAGTTCG...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTTCTCAATGCCGAACTTaGGGATGGTGGAGTACTTGG +
Preference number: 4 (lower is better)
Translates to: LPLLCRSHMVLLGTRARPSQCRT*GWWSTW
Trigger: CCAAGTACTCCACCATCCCCAAGTTCGGCATTGAGA...AGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCTGTCTCATCCCGCTTTaGGGGCAGCTGAGACTGCTG +
Preference number: 4 (lower is better)
Translates to: FWVPGPGLDTTQLVHIRLCLIPL*GQLRLL
Trigger: CAGCAGTCTCAGCTGCCCCCAAAGCGGGATGAGACA...GAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCCAGGCTAAGCATCCCCGCTGCAGGGAGTTATaGGCTGAGAGTCTGTCTCTG +
Preference number: 4 (lower is better)
Translates to: PGHHTVSSHQTPGQAKHPRCREL*AESLSL
Trigger: CAGAGACAGACTCTCAGCCCATAACTCCCTGCAGCG...GGGATGCTTAGCCTGGCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCCTGCGTCCCCGCATGTaGTTGCTCTTCATGCGGTTG +
Preference number: 4 (lower is better)
Translates to: FWVPGPGLDTTQLVHIRLLRPRM*LLFMRL
Trigger: CAACCGCATGAAGAGCAACCACATGCGGGGACGCAG...GAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CAACACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGATGGTGTTGATGGACTaGAAGAGTGACAGCACAGCC +
Preference number: 4 (lower is better)
Translates to: QHSRALSREGSTCPAEPQMVLMD*KSDSTA
Trigger: GGCTGTGCTGTCACTCTTCCAGTCCATCAACACCAT...CTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CAGTCCCGGGGAGGTCAGACGGCATCAGGACTGAAGCAGGGAACCAGTGATAGGATGGTGTTGATGGACTaGAAGAGTGACAGCACAGCC +
Preference number: 4 (lower is better)
Translates to: QSRGGQTASGLKQGTSDRMVLMD*KSDSTA
Trigger: GGCTGTGCTGTCACTCTTCCAGTCCATCAACACCAT...CCTATCACTGGTTCCCTGCTTCAGTCCTGATGCCGTCTGACCTCCCCGGGACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp GCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGTGCTCTTCATGCGGTTaGCAAAAGTGCTCACGGCAT +
Preference number: 4 (lower is better)
Translates to: ASTLAVQEPHGSSGYQGQCSSCG*QKCSRH
Trigger: ATGCCGTGAGCACTTTTGTCAACCGCATGAAGAGCA...CTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp GAAGGGGAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATGAAGCTGGTTGGGCCTaGGGGCTGGTAGAGTACACC +
Preference number: 4 (lower is better)
Translates to: EGETEIPKASTLAVQEPHEAGWA*GLVEYT
Trigger: GGTGTACTCTACCAGCCCTCAGGCCCAACCAGCTTC...ATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp GAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTGGTCTGTGGAGGCTGTaGGATGGCTGGGAGGCTCTG +
Preference number: 4 (lower is better)
Translates to: ETEIPKASTLAVQEPHGSGLWRL*DGWEAL
Trigger: CAGAGCCTCCCAGCCATCTCACAGCCTCCACAGACC...AGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCCAGGCTAAGCATCCCGGAAGCCTTCCCTTCTaGCTTCTTGTTCAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: PGHHTVSSHQTPGQAKHPGSLPF*LLVQLL
Trigger: GAGCAGCTGAACAAGAAGGCAGAAGGGAAGGCTTCC...GGGATGCTTAGCCTGGCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CAGTCCCGGGGAGGTCAGACGGCATCAGGACTGAAGCAGGGAACCAGTGATAGGACCTCCAGGTACTCCTaGTTCTTCTGTCTCATGATC +
Preference number: 4 (lower is better)
Translates to: QSRGGQTASGLKQGTSDRTSRYS*FFCLMI
Trigger: GATCATGAGACAGAAGAAGCAGGAGTACCTGGAGGT...CCTATCACTGGTTCCCTGCTTCAGTCCTGATGCCGTCTGACCTCCCCGGGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACAACCTCCAGGTACTCCTaGTTCTTCTGTCTCATGATC +
Preference number: 4 (lower is better)
Translates to: LAVQEPHGSSGYQGQAWTTSRYS*FFCLMI
Trigger: GATCATGAGACAGAAGAAGCAGGAGTACCTGGAGGT...TGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGATCTGGTATGTGTCCTaGACCACCTTGTACTTGGGT +
Preference number: 4 (lower is better)
Translates to: YPCCAGATWFFWVPGPGLIWYVS*TTLYLG
Trigger: ACCCAAGTACAAGGTGGTCCAGGACACATACCAGAT...CAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGTCTACCTTCATGATCTaGTATGTGTCCTGGACCACC +
Preference number: 4 (lower is better)
Translates to: YPCCAGATWFFWVPGPGLSTFMI*YVSWTT
Trigger: GGTGGTCCAGGACACATACCAGATCATGAAGGTAGA...CAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GAAGGGGAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATGGAAAGGCAGGCATCTaGGCGCGCATCTGGACAGTC +
Preference number: 4 (lower is better)
Translates to: EGETEIPKASTLAVQEPHGKAGI*ARIWTV
Trigger: GACTGTCCAGATGCGCGCCCAGATGCCTGCCTTTCC...ATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp TTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCCAGGGAGTTATGGGCTaGGAGTCTGTCTCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: FWVPGPGLDTTQLVHIRLQGVMG*ESVSGR
Trigger: TCTTCCAGAGACAGACTCTCAGCCCATAACTCCCTG...GAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp GAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTAGCTGGATCTGGCGTTaGCGCTCAGCCTCCTCAGCT +
Preference number: 4 (lower is better)
Translates to: ETEIPKASTLAVQEPHGSSWIWR*RSASSA
Trigger: AGCTGAGGAGGCTGAGCGTCAACGCCAGATCCAGCT...AGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGCTTCTTCTGTCTCATaGTCTCCAGTTTCTGTGCCA +
Preference number: 4 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLASSVS*SPVSVP
Trigger: TGGCACAGAAACTGGAGATCATGAGACAGAAGAAGC...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CAGTCCCGGGGAGGTCAGACGGCATCAGGACTGAAGCAGGGAACCAGTGATAGGACATTAACTTCCACTTaGCTCTTCAGCAGCTCCTTC +
Preference number: 4 (lower is better)
Translates to: QSRGGQTASGLKQGTSDRTLTST*LFSSSF
Trigger: GAAGGAGCTGCTGAAGAGGCAAGTGGAAGTTAATGT...CCTATCACTGGTTCCCTGCTTCAGTCCTGATGCCGTCTGACCTCCCCGGGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp TTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCTGTGGGGCTCTTCCGTaGTTCCTCCTGTTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: FWVPGPGLDTTQLVHIRLCGALP*FLLFLL
Trigger: GAGAAGAAACAGGAGGAAGCACGGAAGAGCCCCACA...GAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCACAGAAGCTGGCTGGTaGCTTTGTCTAGGAGACGCT +
Preference number: 4 (lower is better)
Translates to: WFFWVPGPGLDTTQLVHITEAGW*LCLGDA
Trigger: AGCGTCTCCTAGACAAAGCCACCAGCCAGCTTCTGT...GATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTCATCATGGACTGTCTaGCCACAGTTCTTTACCACA +
Preference number: 4 (lower is better)
Translates to: QEPHGSSGYQGQAWTPHSSSWTV*PQFFTT
Trigger: TGTGGTAAAGAACTGTGGCCAGACAGTCCATGATGA...ACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTATCTACCTTCATGATCTaGTATGTGTCCTGGACCACC +
Preference number: 4 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLSTFMI*YVSWTT
Trigger: GGTGGTCCAGGACACATACCAGATCATGAAGGTAGA...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp TTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCCTGAGAGTCTGTCTCTaGAAGAGGAGCCTCTGCCAT +
Preference number: 4 (lower is better)
Translates to: FWVPGPGLDTTQLVHIRLLRVCL*KRSLCH
Trigger: ATGGCAGAGGCTCCTCTTCCAGAGACAGACTCTCAG...GAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR TCA 90 bp GAAGGGGAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATGATGGACTGGAAGAGTaGCAGCACAGCCGAGTCGTT +
Preference number: 4 (lower is better)
Translates to: EGETEIPKASTLAVQEPHDGLEE*QHSRVV
Trigger: AACGACTCGGCTGTGCTGTCACTCTTCCAGTCCATC...ATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp AGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCAGTAATAGGGTTTACAGCATATTTTaGTTGTGTGTCCCCCTGACG +
Preference number: 4 (lower is better)
Translates to: RGKAHPLLTEGTLQGSNRVYSIF*LCVPLT
Trigger: CGTCAGGGGGACACACAAGCAAAATATGCTGTAAAC...CCTATTACTGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GAAGGGGAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATGCACCTCCTTCTCAATaGCGAACTTGGGGATGGTGG +
Preference number: 4 (lower is better)
Translates to: EGETEIPKASTLAVQEPHAPPSQ*RTWGWW
Trigger: CCACCATCCCCAAGTTCGGCATTGAGAAGGAGGTGC...ATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTCCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
3UTR CAA 72 bp GAGAAGGGGAGACAGAGATACCTAAAGCTTCTACCCTaGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACC +
Preference number: 4 (lower is better)
Translates to: EKGRQRYLKLLP*LCRSHMVLLGT
Trigger: GGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTCCCCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GAAGGGGAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATACTTGGAGGAGCACTTaGCACAGAAGATCTGCCCAC +
Preference number: 4 (lower is better)
Translates to: EGETEIPKASTLAVQEPHTWRST*HRRSAH
Trigger: GTGGGCAGATCTTCTGTGGCAAGTGCTCCTCCAAGT...ATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CAGTCCCGGGGAGGTCAGACGGCATCAGGACTGAAGCAGGGAACCAGTGATAGGCTCTGCCTTTGGATGTaGTGTATATGTTGTTTTCTG +
Preference number: 4 (lower is better)
Translates to: QSRGGQTASGLKQGTSDRLCLWM*CICCFL
Trigger: CAGAAAACAACATATACAGCACATCCAAAGGCAGAG...CCTATCACTGGTTCCCTGCTTCAGTCCTGATGCCGTCTGACCTCCCCGGGACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp CTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACTCTGCCTTTGGATGTaGTGTATATGTTGTTTTCTG +
Preference number: 4 (lower is better)
Translates to: LAVQEPHGSSGYQGQAWTLCLWM*CICCFL
Trigger: CAGAAAACAACATATACAGCACATCCAAAGGCAGAG...TGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCCTTCTCCTGTTCCTaGAGGCGCTGGATAGCTAGC +
Preference number: 4 (lower is better)
Translates to: ETEIPKASTLAVQEPHGSSFSCS*RRWIAS
Trigger: GCTAGCTATCCAGCGCCTGCAGGAACAGGAGAAGGA...AGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp CCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCCAGGCTAAGCATCCCCCTTCAGTTCTTCCATaGTCTGTTTGTTGGCCACTT +
Preference number: 4 (lower is better)
Translates to: PGHHTVSSHQTPGQAKHPPSVLP*SVCWPL
Trigger: AAGTGGCCAACAAACAGACCATGGAAGAACTGAAGG...GGGATGCTTAGCCTGGCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GAAGGGGAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATTGTACTCTGCACCGATaGCATTCCTCAGCATCCACC +
Preference number: 4 (lower is better)
Translates to: EGETEIPKASTLAVQEPHCTLHR*HSSAST
Trigger: GGTGGATGCTGAGGAATGCCATCGGTGCAGAGTACA...ATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTCCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR GCA 90 bp GAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTATAGCTAGCTGTCTCTaGACCTCCAGGTACTCCTGC +
Preference number: 4 (lower is better)
Translates to: ETEIPKASTLAVQEPHGSIASCL*TSRYSC
Trigger: GCAGGAGTACCTGGAGGTGCAGAGACAGCTAGCTAT...AGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GAAGGGGAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATATCTGGTATGTGTCCTaGACCACCTTGTACTTGGGT +
Preference number: 4 (lower is better)
Translates to: EGETEIPKASTLAVQEPHIWYVS*TTLYLG
Trigger: ACCCAAGTACAAGGTGGTCCAGGACACATACCAGAT...ATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTCCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CCA 90 bp GAAGGGGAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATCCTTCAGTTCTTCCATaGTCTGTTTGTTGGCCACTT +
Preference number: 4 (lower is better)
Translates to: EGETEIPKASTLAVQEPHPSVLP*SVCWPL
Trigger: AAGTGGCCAACAAACAGACCATGGAAGAACTGAAGG...ATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTCCCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 90 bp TCTGTGGGGCCTGAGAAGCCACGCTCTGGTAGCCTGGGGTTGGTGTaGGCTGGTAGGAGGAGTAGGCAGGACTGGTGGTGGGCCCGGCCT +
Preference number: 5 (lower is better)
Translates to: SVGPEKPRSGSLGLV*AGRRSRQDWWWARP
Trigger: AGGCCGGGCCCACCACCAGTCCTGCCTACTCCTCCTACCAGCCCACACCAACCCCAGGCTACCAGAGCGTGGCTTCTCAGGCCCCACAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp TACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGCTGGGCCACAGGGGGTaGCTGCTGGGGAGGGCCGGT +
Preference number: 5 (lower is better)
Translates to: YPCCAGATWFFWVPGPGLLGHRG*LLGRAG
Trigger: ACCGGCCCTCCCCAGCAGCAACCCCCTGTGGCCCAG...CAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CAACACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGCTGGGCCACAGGGGGTaGCTGCTGGGGAGGGCCGGT +
Preference number: 5 (lower is better)
Translates to: QHSRALSREGSTCPAEPQLGHRG*LLGRAG
Trigger: ACCGGCCCTCCCCAGCAGCAACCCCCTGTGGCCCAG...CTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTGTTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS GCA 90 bp CCTCAGCCAGAGGTGCTGATGAGTTCACAGGCGAGGAATACAGGCTaGCAGCTGGGGGCGCAGAGGAAGCCAAGGGCGTGGGCTCTGCCT +
Preference number: 5 (lower is better)
Translates to: PQPEVLMSSQARNTG*QLGAQRKPRAWALP
Trigger: AGGCAGAGCCCACGCCCTTGGCTTCCTCTGCGCCCCCAGCTGGCAGCCTGTATTCCTCGCCTGTGAACTCATCAGCACCTCTGGCTGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS CCA 90 bp GGAGCCTCTGCCATGCTGTTGGGGGCTGTATGTCCTTCTCCAGGCTaGGCAGCAGGCTCTGTCAGGGGCACAGGTGCAGATGGTGTGGGG +
Preference number: 5 (lower is better)
Translates to: GASAMLLGAVCPSPG*AAGSVRGTGADGVG
Trigger: CCCCACACCATCTGCACCTGTGCCCCTGACAGAGCCTGCTGCCCAGCCTGGAGAAGGACATACAGCCCCCAACAGCATGGCAGAGGCTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS-3UTR CAA 90 bp AGTGATAGGAGCCAGACCACCGAGGACAGGGAAGAGGGCCAAGGGGGAAGGCCCCGCTCATCCAGCTGGTaGAGCAGCTCGAGCAGCTGC +
Preference number: 5 (lower is better)
Translates to: SDRSQTTEDREEGQGGRPRSSSW*SSSSSC
Trigger: GCAGCTGCTCGAGCTGCTCAACCAGCTGGATGAGCG...GGGCCTTCCCCCTTGGCCCTCTTCCCTGTCCTCGGTGGTCTGGCTCCTATCACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CATCAGACTCCGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAAGCACAGCCGAGTCGTaGGTGATGCTGCGTCCCCGC +
Preference number: 5 (lower is better)
Translates to: HQTPGQAKHPHSIHLWHPSTAES*VMLRPR
Trigger: GCGGGGACGCAGCATCACCAACGACTCGGCTGTGCT...TGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCGGAGTCTGATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp GGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCAGCACAGCCGAGTCGTaGGTGATGCTGCGTCCCCGC +
Preference number: 5 (lower is better)
Translates to: GTRARPGHHTVSSHQTPGSTAES*VMLRPR
Trigger: GCGGGGACGCAGCATCACCAACGACTCGGCTGTGCT...GCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCAACACAGCCGGTGCTGGGATCTGCTGTaGTGCCAGGCATGCTGGGGT +
Preference number: 5 (lower is better)
Translates to: RARLSIPTAFTCGTQHSRCWDLL*CQACWG
Trigger: ACCCCAGCATGCCTGGCACAACAGCAGATCCCAGCA...CCGGCTGTGTTGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp AGTGATAGGAGCCAGACCACCGAGGACAGGGAAGAGGGCCAAGGGGGAAGGCCCGGTAGCCCATGGACATaGGCTGGCTCCCCATGTAGC +
Preference number: 5 (lower is better)
Translates to: SDRSQTTEDREEGQGGRPGSPWT*AGSPCS
Trigger: GCTACATGGGGAGCCAGCCAATGTCCATGGGCTACC...GGGCCTTCCCCCTTGGCCCTCTTCCCTGTCCTCGGTGGTCTGGCTCCTATCACT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS GCA 90 bp TTCTTCACGCAGGGCGCTCAGAGCCCCTCGGGCGTCACGTATCTGTaGCAGCTTGTCCTGAAGGCCCTCGTAGTACAGCCTGCGCTCATC +
Preference number: 5 (lower is better)
Translates to: FFTQGAQSPSGVTYL*QLVLKALVVQPALI
Trigger: GATGAGCGCAGGCTGTACTACGAGGGCCTTCAGGACAAGCTGGCACAGATACGTGACGCCCGAGGGGCTCTGAGCGCCCTGCGTGAAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS-3UTR CAA 90 bp AGGGCCAAGGGGGAAGGCCCACCCCTTGCTCACAGAAGGGACACTACAGGGCAGGTGTCCTGGACCACCTaGTACTTGGGTTCGTTCCGG +
Preference number: 5 (lower is better)
Translates to: RAKGEGPPLAHRRDTTGQVSWTT*YLGSFR
Trigger: CCGGAACGAACCCAAGTACAAGGTGGTCCAGGACAC...CTGCCCTGTAGTGTCCCTTCTGTGAGCAAGGGGTGGGCCTTCCCCCTTGGCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCCTGTCTCATCCCGCTTaGGGGGCAGCTGAGACTGCT +
Preference number: 5 (lower is better)
Translates to: HSRALSREGSTCPAEPQSLSHPA*GAAETA
Trigger: AGCAGTCTCAGCTGCCCCCAAAGCGGGATGAGACAG...GGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp GGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCCGCTCATCCAGCTGGTaGAGCAGCTCGAGCAGCTGC +
Preference number: 5 (lower is better)
Translates to: GTRARPGHHTVSSHQTPGRSSSW*SSSSSC
Trigger: GCAGCTGCTCGAGCTGCTCAACCAGCTGGATGAGCG...GCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACAGCTGGATCTGGCGTaGACGCTCAGCCTCCTCAGC +
Preference number: 5 (lower is better)
Translates to: LAVQEPHGSSGYQGQAWTQLDLA*TLSLLS
Trigger: GCTGAGGAGGCTGAGCGTCAACGCCAGATCCAGCTG...TGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp AGTGATAGGAGCCAGACCACCGAGGACAGGGAAGAGGGCCAAGGGGGAAGGCCCGACAGTCTGCTTCTGTaGCTCCAGACGCATCTGCCG +
Preference number: 5 (lower is better)
Translates to: SDRSQTTEDREEGQGGRPDSLLL*LQTHLP
Trigger: CGGCAGATGCGTCTGGAGCAACAGAAGCAGACTGTC...GGGCCTTCCCCCTTGGCCCTCTTCCCTGTCCTCGGTGGTCTGGCTCCTATCACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp GCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCCGGGGAGGTTGCTGGGATCTGCTGTaGTGCCAGGCATGCTGGGGT +
Preference number: 5 (lower is better)
Translates to: ALSREGSTCPAEPQSRGGCWDLL*CQACWG
Trigger: ACCCCAGCATGCCTGGCACAACAGCAGATCCCAGCA...ACCTCCCCGGGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS TCA 90 bp CAGCTCGAGCAGCTGCGGGTGCATGGTGTTGATGGACTGGAAGAGTaGCAGCACAGCCGAGTCGTTGGTGATGCTGCGTCCCCGCATGTG +
Preference number: 5 (lower is better)
Translates to: QLEQLRVHGVDGLEE*QHSRVVGDAASPHV
Trigger: CACATGCGGGGACGCAGCATCACCAACGACTCGGCTGTGCTGTCACTCTTCCAGTCCATCAACACCATGCACCCGCAGCTGCTCGAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS GCA 90 bp AGCCTGCGCTCATCCAGCTGGTTGAGCAGCTCGAGCAGCTGCGGGTaGATGGTGTTGATGGACTGGAAGAGTGACAGCACAGCCGAGTCG +
Preference number: 5 (lower is better)
Translates to: SLRSSSWLSSSSSCG*MVLMDWKSDSTAES
Trigger: CGACTCGGCTGTGCTGTCACTCTTCCAGTCCATCAACACCATGCACCCGCAGCTGCTCGAGCTGCTCAACCAGCTGGATGAGCGCAGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS GCA 90 bp GGAAAGGCAGGCATCTGGGCGCGCATCTGGACAGTCTGCTTCTGTTaGTCCAGACGCATCTGCCGTTCCTTCTCCTGTTCCTGCAGGCGC +
Preference number: 5 (lower is better)
Translates to: GKAGIWARIWTVCFC*SRRICRSFSCSCRR
Trigger: GCGCCTGCAGGAACAGGAGAAGGAACGGCAGATGCGTCTGGAGCAACAGAAGCAGACTGTCCAGATGCGCGCCCAGATGCCTGCCTTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS GCA 90 bp GCTGGTAGCCCATGGACATTGGCTGGCTCCCCATGTAGCCTATGTTaGTGGTCTGTGGAGGCTGTGAGATGGCTGGGAGGCTCTGTGGGG +
Preference number: 5 (lower is better)
Translates to: AGSPWTLAGSPCSLC*WSVEAVRWLGGSVG
Trigger: CCCCACAGAGCCTCCCAGCCATCTCACAGCCTCCACAGACCAGCAACATAGGCTACATGGGGAGCCAGCCAATGTCCATGGGCTACCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS GCA 90 bp AGCCTGCGCTCATCCAGCTGGTTGAGCAGCTCGAGCAGCTGCGGGTaGATGGTGTTGATGGACTCACTAAAGGGGCCGCTGCAGGGAGTT +
Preference number: 5 (lower is better)
Translates to: SLRSSSWLSSSSSCG*MVLMDSLKGPLQGV
Trigger: AACTCCCTGCAGCGGCCCCTTTAGTGAGTCCATCAACACCATGCACCCGCAGCTGCTCGAGCTGCTCAACCAGCTGGATGAGCGCAGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135231.3
CDS-3UTR CAA 90 bp CACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCGCCTCTGCCATGCTGTaGGGGGCTGTATGTCCTTCT +
Preference number: 5 (lower is better)
Translates to: HSRALSREGSTCPAEPQSASAML*GAVCPS
Trigger: AGAAGGACATACAGCCCCCAACAGCATGGCAGAGGC...GGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CACAGCCGGGCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCGCATTCTGCAGGGCCTaGAGGAACTGCTCATGGCTC +
Preference number: 5 (lower is better)
Translates to: HSRALSREGSTCPAEPQSAFCRA*RNCSWL
Trigger: GAGCCATGAGCAGTTCCTCAAGGCCCTGCAGAATGC...GGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGCCCGGCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACAGGTAGCCCATGGACATaGGCTGGCTCCCCATGTAGC +
Preference number: 5 (lower is better)
Translates to: LAVQEPHGSSGYQGQAWTGSPWT*AGSPCS
Trigger: GCTACATGGGGAGCCAGCCAATGTCCATGGGCTACC...TGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 90 bp TGGGCTGAGAGTCTGTCTCTGGAAGAGGAGCCTCTGCCATGCTGTTaGGGGCTGTATGTCCTTCTCCAGGCTGGGCAGCAGGCTCTGTCA +
Preference number: 5 (lower is better)
Translates to: WAESLSLEEEPLPCC*GLYVLLQAGQQALS
Trigger: TGACAGAGCCTGCTGCCCAGCCTGGAGAAGGACATACAGCCCCCAACAGCATGGCAGAGGCTCCTCTTCCAGAGACAGACTCTCAGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS CCA 90 bp TGGTTGAGCAGCTCGAGCAGCTGCGGGTGCATGGTGTTGATGGACTaGAAGAGTGACAGCACAGCCGAGTCGTTGGTGATGCTGCGTCCC +
Preference number: 5 (lower is better)
Translates to: WLSSSSSCGCMVLMD*KSDSTAESLVMLRP
Trigger: GGGACGCAGCATCACCAACGACTCGGCTGTGCTGTCACTCTTCCAGTCCATCAACACCATGCACCCGCAGCTGCTCGAGCTGCTCAACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CATCAGACTCCGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCACGTCCCCGCATGTGGTaGCTCTTCATGCGGTTGACA +
Preference number: 5 (lower is better)
Translates to: HQTPGQAKHPHSIHLWHPRPRMW*LFMRLT
Trigger: TGTCAACCGCATGAAGAGCAACCACATGCGGGGACG...TGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCGGAGTCTGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CAGTCCCGGGGAGGTCAGACGGCATCAGGACTGAAGCAGGGAACCAGTGATAGGCGTCCCCGCATGTGGTaGCTCTTCATGCGGTTGACA +
Preference number: 5 (lower is better)
Translates to: QSRGGQTASGLKQGTSDRRPRMW*LFMRLT
Trigger: TGTCAACCGCATGAAGAGCAACCACATGCGGGGACG...CCTATCACTGGTTCCCTGCTTCAGTCCTGATGCCGTCTGACCTCCCCGGGACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp GCACTCTCCAGAGAAGGTTCTACTTGCCCTGCAGAGCCCCAGTCCCGGGGAGGTTGCGGGTGCATGGTGTaGATGGACTGGAAGAGTGAC +
Preference number: 5 (lower is better)
Translates to: ALSREGSTCPAEPQSRGGCGCMV*MDWKSD
Trigger: GTCACTCTTCCAGTCCATCAACACCATGCACCCGCA...ACCTCCCCGGGACTGGGGCTCTGCAGGGCAAGTAGAACCTTCTCTGGAGAGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS TCA 90 bp TTCTGTCTCATGATCTCCAGTTTCTGTGCCAGCTGGATCTGGCGTTaGCGCTCAGCCTCCTCAGCTGCCCGGCGCAGCTTCTCCCTGTGT +
Preference number: 5 (lower is better)
Translates to: FCLMISSFCASWIWR*RSASSAARRSFSLC
Trigger: ACACAGGGAGAAGCTGCGCCGGGCAGCTGAGGAGGCTGAGCGTCAACGCCAGATCCAGCTGGCACAGAAACTGGAGATCATGAGACAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS GCA 90 bp GAGTTATGGGCTGAGAGTCTGTCTCTGGAAGAGGAGCCTCTGCCATaGTGTTGGGGGCTGTATGTCCTTCTCCAGGCTGGGCAGCAGGCT +
Preference number: 5 (lower is better)
Translates to: ELWAESLSLEEEPLP*CWGLYVLLQAGQQA
Trigger: AGCCTGCTGCCCAGCCTGGAGAAGGACATACAGCCCCCAACAGCATGGCAGAGGCTCCTCTTCCAGAGACAGACTCTCAGCCCATAACTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS-3UTR CAA 90 bp TACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGTGGACCACCTTGTACTaGGGTTCGTTCCGGAAGGCA +
Preference number: 5 (lower is better)
Translates to: YPCCAGATWFFWVPGPGLWTTLY*GSFRKA
Trigger: TGCCTTCCGGAACGAACCCAAGTACAAGGTGGTCCA...CAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp GCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGTGTCCTGGACCACCTaGTACTTGGGTTCGTTCCGG +
Preference number: 5 (lower is better)
Translates to: ASTLAVQEPHGSSGYQGQVSWTT*YLGSFR
Trigger: CCGGAACGAACCCAAGTACAAGGTGGTCCAGGACAC...CTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCCAGGCTAAGCATCCCCTGTCTCATCCCGCTTaGGGGGCAGCTGAGACTGCT +
Preference number: 5 (lower is better)
Translates to: PGHHTVSSHQTPGQAKHPLSHPA*GAAETA
Trigger: AGCAGTCTCAGCTGCCCCCAAAGCGGGATGAGACAG...GGGATGCTTAGCCTGGCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CATCAGACTCCGGGCCAGGCTAAGCATCCCCACAGCATTCACCTGTGGCACCCATGCGGGTGCATGGTGTaGATGGACTGGAAGAGTGAC +
Preference number: 5 (lower is better)
Translates to: HQTPGQAKHPHSIHLWHPCGCMV*MDWKSD
Trigger: GTCACTCTTCCAGTCCATCAACACCATGCACCCGCA...TGGGTGCCACAGGTGAATGCTGTGGGGATGCTTAGCCTGGCCCGGAGTCTGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS TCA 90 bp TTCTGGTACTGCTCACTAAAGGGGCCGCTGCAGGGAGTTATGGGCTaGGAGTCTGTCTCTGGAAGAGGAGCCTCTGCCATGCTGTTGGGG +
Preference number: 5 (lower is better)
Translates to: FWYCSLKGPLQGVMG*ESVSGRGASAMLLG
Trigger: CCCCAACAGCATGGCAGAGGCTCCTCTTCCAGAGACAGACTCTCAGCCCATAACTCCCTGCAGCGGCCCCTTTAGTGAGCAGTACCAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106203.9
CDS TCA 90 bp CCATTCTGGTACTCACTAAAGGGGCCGCTGCAGGGAGTTATGGGCTaGGAGTCTGTCTCTGGAAGAGGAGCCTCTGCCATGCTGTTGGGG +
Preference number: 5 (lower is better)
Translates to: PFWYSLKGPLQGVMG*ESVSGRGASAMLLG
Trigger: CCCCAACAGCATGGCAGAGGCTCCTCTTCCAGAGACAGACTCTCAGCCCATAACTCCCTGCAGCGGCCCCTTTAGTGAGTACCAGAATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106205.9
CDS TCA 90 bp GTGTTGATGGACTCACTAAAGGGGCCGCTGCAGGGAGTTATGGGCTaGGAGTCTGTCTCTGGAAGAGGAGCCTCTGCCATGCTGTTGGGG +
Preference number: 5 (lower is better)
Translates to: VLMDSLKGPLQGVMG*ESVSGRGASAMLLG
Trigger: CCCCAACAGCATGGCAGAGGCTCCTCTTCCAGAGACAGACTCTCAGCCCATAACTCCCTGCAGCGGCCCCTTTAGTGAGTCCATCAACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135231.3
CDS GCA 90 bp ATGCTCGGCAGTGATGCTTGCGGGTCACCACCCCAAACTGTACTCTaGACCGATGGCATTCCTCAGCATCCACCCAGTCAGGGGCTCTTT +
Preference number: 5 (lower is better)
Translates to: MLGSDACGSPPQTVL*TDGIPQHPPSQGLF
Trigger: AAAGAGCCCCTGACTGGGTGGATGCTGAGGAATGCCATCGGTGCAGAGTACAGTTTGGGGTGGTGACCCGCAAGCATCACTGCCGAGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000140862.7
CDS GCA 90 bp CAGGCTGCCAGCTGGGGGCGCAGAGGAAGCCAAGGGCGTGGGCTCTaGCTTTGGATGTGCTGTATATGTTGTTTTCTGTCTCATCCTCTC +
Preference number: 5 (lower is better)
Translates to: QAASWGRRGSQGRGL*LWMCCICCFLSHPL
Trigger: GAGAGGATGAGACAGAAAACAACATATACAGCACATCCAAAGGCAGAGCCCACGCCCTTGGCTTCCTCTGCGCCCCCAGCTGGCAGCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS GCA 90 bp TGCTTCTGTTGCTCCAGACGCATCTGCCGTTCCTTCTCCTGTTCCTaGAGGCGCTGGATAGCTAGCTGTCTCTGCACCTCCAGGTACTCC +
Preference number: 5 (lower is better)
Translates to: CFCCSRRICRSFSCS*RRWIASCLCTSRYS
Trigger: GGAGTACCTGGAGGTGCAGAGACAGCTAGCTATCCAGCGCCTGCAGGAACAGGAGAAGGAACGGCAGATGCGTCTGGAGCAACAGAAGCA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS CCA 90 bp TGCTCCAGACGCATCTGCCGTTCCTTCTCCTGTTCCTGCAGGCGCTaGATAGCTAGCTGTCTCTGCACCTCCAGGTACTCCTGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: CSRRICRSFSCSCRR*IASCLCTSRYSCFF
Trigger: GAAGAAGCAGGAGTACCTGGAGGTGCAGAGACAGCTAGCTATCCAGCGCCTGCAGGAACAGGAGAAGGAACGGCAGATGCGTCTGGAGCA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS-3UTR CAA 90 bp GCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGTGGACCACCTTGTACTaGGGTTCGTTCCGGAAGGCA +
Preference number: 5 (lower is better)
Translates to: ASTLAVQEPHGSSGYQGQWTTLY*GSFRKA
Trigger: TGCCTTCCGGAACGAACCCAAGTACAAGGTGGTCCA...CTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CAGTCCCGGGGAGGTCAGACGGCATCAGGACTGAAGCAGGGAACCAGTGATAGGTACTTGGAGGAGCACTaGCCACAGAAGATCTGCCCA +
Preference number: 5 (lower is better)
Translates to: QSRGGQTASGLKQGTSDRYLEEH*PQKICP
Trigger: TGGGCAGATCTTCTGTGGCAAGTGCTCCTCCAAGTA...CCTATCACTGGTTCCCTGCTTCAGTCCTGATGCCGTCTGACCTCCCCGGGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGCGTGGGCTCTGCCTTaGGATGTGCTGTATATGTTG +
Preference number: 5 (lower is better)
Translates to: LPLLCRSHMVLLGTRARPAWALP*DVLYML
Trigger: CAACATATACAGCACATCCAAAGGCAGAGCCCACGC...AGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp GGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCGCGTGGGCTCTGCCTTaGGATGTGCTGTATATGTTG +
Preference number: 5 (lower is better)
Translates to: GTRARPGHHTVSSHQTPGAWALP*DVLYML
Trigger: CAACATATACAGCACATCCAAAGGCAGAGCCCACGC...GCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCCAGGCTAAGCATCCCGCCTCTGCCATGCTGTaGGGGGCTGTATGTCCTTCT +
Preference number: 5 (lower is better)
Translates to: PGHHTVSSHQTPGQAKHPASAML*GAVCPS
Trigger: AGAAGGACATACAGCCCCCAACAGCATGGCAGAGGC...GGGATGCTTAGCCTGGCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 90 bp AGTGACAGCACAGCCGAGTCGTTGGTGATGCTGCGTCCCCGCATGTaGTTGCTCTTCATGCGGTTGACAAAAGTGCTCACGGCATTCTGC +
Preference number: 5 (lower is better)
Translates to: SDSTAESLVMLRPRM*LLFMRLTKVLTAFC
Trigger: GCAGAATGCCGTGAGCACTTTTGTCAACCGCATGAAGAGCAACCACATGCGGGGACGCAGCATCACCAACGACTCGGCTGTGCTGTCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTTTCTCAATGCCGAACTaGGGGATGGTGGAGTACTTG +
Preference number: 5 (lower is better)
Translates to: LPLLCRSHMVLLGTRARPFSMPN*GMVEYL
Trigger: CAAGTACTCCACCATCCCCAAGTTCGGCATTGAGAA...AGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp TTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCAGACTCGCATTCTGCAGGGCCTaGAGGAACTGCTCATGGCTC +
Preference number: 5 (lower is better)
Translates to: FWVPGPGLDTTQLVHIRLAFCRA*RNCSWL
Trigger: GAGCCATGAGCAGTTCCTCAAGGCCCTGCAGAATGC...GAGTCTGATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS GCA 90 bp ATGTGGTTGCTCTTCATGCGGTTGACAAAAGTGCTCACGGCATTCTaGAGGGCCTTGAGGAACTGCTCATGGCTCTCCTCCGACTCCCCA +
Preference number: 5 (lower is better)
Translates to: MWLLFMRLTKVLTAF*RALRNCSWLSSDSP
Trigger: TGGGGAGTCGGAGGAGAGCCATGAGCAGTTCCTCAAGGCCCTGCAGAATGCCGTGAGCACTTTTGTCAACCGCATGAAGAGCAACCACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 90 bp GCCAGCTGGGGGCGCAGAGGAAGCCAAGGGCGTGGGCTCTGCCTTTaGATGTGCTGTATATGTTGTTTTCTGTCTCATCCTCTCTTTCTC +
Preference number: 5 (lower is better)
Translates to: ASWGRRGSQGRGLCL*MCCICCFLSHPLFL
Trigger: GAGAAAGAGAGGATGAGACAGAAAACAACATATACAGCACATCCAAAGGCAGAGCCCACGCCCTTGGCTTCCTCTGCGCCCCCAGCTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 90 bp AGGAATACAGGCTGCCAGCTGGGGGCGCAGAGGAAGCCAAGGGCGTaGGCTCTGCCTTTGGATGTGCTGTATATGTTGTTTTCTGTCTCA +
Preference number: 5 (lower is better)
Translates to: RNTGCQLGAQRKPRA*ALPLDVLYMLFSVS
Trigger: TGAGACAGAAAACAACATATACAGCACATCCAAAGGCAGAGCCCACGCCCTTGGCTTCCTCTGCGCCCCCAGCTGGCAGCCTGTATTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 90 bp ACAAAAGTGCTCACGGCATTCTGCAGGGCCTTGAGGAACTGCTCATaGCTCTCCTCCGACTCCCCATTCTGGTACTGCTCACTAAAGGGG +
Preference number: 5 (lower is better)
Translates to: TKVLTAFCRALRNCS*LSSDSPFWYCSLKG
Trigger: CCCCTTTAGTGAGCAGTACCAGAATGGGGAGTCGGAGGAGAGCCATGAGCAGTTCCTCAAGGCCCTGCAGAATGCCGTGAGCACTTTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106203.9
CDS CCA 90 bp AGGAATACAGGCTGCCAGCTGGGGGCGCAGAGGAAGCCAAGGGCGTaGGCTCTGCCTTTGGATGTGCTGTATATGTTGTTTTCTGTCTCT +
Preference number: 5 (lower is better)
Translates to: RNTGCQLGAQRKPRA*ALPLDVLYMLFSVS
Trigger: AGAGACAGAAAACAACATATACAGCACATCCAAAGGCAGAGCCCACGCCCTTGGCTTCCTCTGCGCCCCCAGCTGGCAGCCTGTATTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135231.3
CDS-3UTR CAA 90 bp TCTACCCTTGCTGTGCAGGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTCCATGGTCTGTTTGTaGGCCACTTCATCATGGACT +
Preference number: 5 (lower is better)
Translates to: STLAVQEPHGSSGYQGQASMVCL*ATSSWT
Trigger: AGTCCATGATGAAGTGGCCAACAAACAGACCATGGA...GGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCCTGCACAGCAAGGGTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CAGTCCCGGGGAGGTCAGACGGCATCAGGACTGAAGCAGGGAACCAGTGATAGGTCCATGGTCTGTTTGTaGGCCACTTCATCATGGACT +
Preference number: 5 (lower is better)
Translates to: QSRGGQTASGLKQGTSDRSMVCL*ATSSWT
Trigger: AGTCCATGATGAAGTGGCCAACAAACAGACCATGGA...CCTATCACTGGTTCCCTGCTTCAGTCCTGATGCCGTCTGACCTCCCCGGGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTATTCTCAATGCCGAACTaGGGGATGGTGGAGTACTTG +
Preference number: 5 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLFSMPN*GMVEYL
Trigger: CAAGTACTCCACCATCCCCAAGTTCGGCATTGAGAA...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp GAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTCAGCTGGATCTGGCGTaGACGCTCAGCCTCCTCAGC +
Preference number: 5 (lower is better)
Translates to: ETEIPKASTLAVQEPHGSQLDLA*TLSLLS
Trigger: GCTGAGGAGGCTGAGCGTCAACGCCAGATCCAGCTG...AGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS GCA 90 bp TGGGGGCGCAGAGGAAGCCAAGGGCGTGGGCTCTGCCTTTGGATGTaGTGTATATGTTGTTTTCTGTCTCATCCTCTCTTTCTCCTCAGC +
Preference number: 5 (lower is better)
Translates to: WGRRGSQGRGLCLWM*CICCFLSHPLFLLS
Trigger: GCTGAGGAGAAAGAGAGGATGAGACAGAAAACAACATATACAGCACATCCAAAGGCAGAGCCCACGCCCTTGGCTTCCTCTGCGCCCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS GCA 90 bp CGTTCCTTCTCCTGTTCCTGCAGGCGCTGGATAGCTAGCTGTCTCTaGACCTCCAGGTACTCCTGCTTCTTCTGTCTCATGATCTCCAGT +
Preference number: 5 (lower is better)
Translates to: RSFSCSCRRWIASCL*TSRYSCFFCLMISS
Trigger: ACTGGAGATCATGAGACAGAAGAAGCAGGAGTACCTGGAGGTGCAGAGACAGCTAGCTATCCAGCGCCTGCAGGAACAGGAGAAGGAACG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS CCA 90 bp TTGCTTGTGTGTCCCCCTGACGGATCAGGTCGCAGATCTGTAGAATaGACTCCCAGTCTGTCTCCAACAGAAGCTGGCTGGTGGCTTTGT +
Preference number: 5 (lower is better)
Translates to: LLVCPPDGSGRRSVE*TPSLSPTEAGWWLC
Trigger: ACAAAGCCACCAGCCAGCTTCTGTTGGAGACAGACTGGGAGTCCATTCTACAGATCTGCGACCTGATCCGTCAGGGGGACACACAAGCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000140862.7
CDS CCA 90 bp GGTCATGAGATTCTGCATATTGTACGGCTGGTAGCCCATGGACATTaGCTGGCTCCCCATGTAGCCTATGTTGCTGGTCTGTGGAGGCTG +
Preference number: 5 (lower is better)
Translates to: GHEILHIVRLVAHGH*LAPHVAYVAGLWRL
Trigger: CAGCCTCCACAGACCAGCAACATAGGCTACATGGGGAGCCAGCCAATGTCCATGGGCTACCAGCCGTACAATATGCAGAATCTCATGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 90 bp GGAAGGCATGTGCCCAGGCCTTCAGCAGCTCCTTCAGTTCTTCCATaGTCTGTTTGTTGGCCACTTCATCATGGACTGTCTGGCCACAGT +
Preference number: 5 (lower is better)
Translates to: GRHVPRPSAAPSVLP*SVCWPLHHGLSGHS
Trigger: ACTGTGGCCAGACAGTCCATGATGAAGTGGCCAACAAACAGACCATGGAAGAACTGAAGGAGCTGCTGAAGGCCTGGGCACATGCCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140862.7
CDS-3UTR CAA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTATACAGCATATTTTGCTaGTGTGTCCCCCTGACGGAT +
Preference number: 5 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLYSIFC*CVPLTD
Trigger: ATCCGTCAGGGGGACACACAAGCAAAATATGCTGTA...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp TGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCTACTTGGAGGAGCACTaGCCACAGAAGATCTGCCCA +
Preference number: 5 (lower is better)
Translates to: WFFWVPGPGLDTTQLVHIYLEEH*PQKICP
Trigger: TGGGCAGATCTTCTGTGGCAAGTGCTCCTCCAAGTA...GATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp CCTGGACACCACACAGTTAGTTCACATCAGACTCCGGGCCAGGCTAAGCATCCCTCTTCCATGGTCTGTTaGTTGGCCACTTCATCATGG +
Preference number: 5 (lower is better)
Translates to: PGHHTVSSHQTPGQAKHPSSMVC*LATSSW
Trigger: CCATGATGAAGTGGCCAACAAACAGACCATGGAAGA...GGGATGCTTAGCCTGGCCCGGAGTCTGATGTGAACTAACTGTGTGGTGTCCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS GCA 90 bp TGTGTCCTGGACCACCTTGTACTTGGGTTCGTTCCGGAAGGCATGTaGCCAGGCCTGGATCAGGTACAAGATCTTGTTCCGAACATTAAC +
Preference number: 5 (lower is better)
Translates to: CVLDHLVLGFVPEGM*PGLDQVQDLVPNIN
Trigger: GTTAATGTTCGGAACAAGATCTTGTACCTGATCCAGGCCTGGGCACATGCCTTCCGGAACGAACCCAAGTACAAGGTGGTCCAGGACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 90 bp TCAGGGAAGACATGTCCTTCTACCTTCATGATCTGGTATGTGTCCTaGACCACCTTGTACTTGGGTTCGTTCCGGAAGGCATGTGCCCAG +
Preference number: 5 (lower is better)
Translates to: SGKTCPSTFMIWYVS*TTLYLGSFRKACAQ
Trigger: CTGGGCACATGCCTTCCGGAACGAACCCAAGTACAAGGTGGTCCAGGACACATACCAGATCATGAAGGTAGAAGGACATGTCTTCCCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000140862.7
CDS CCA 90 bp CCCAGGCCTTCAGCAGCTCCTTCAGTTCTTCCATGGTCTGTTTGTTaGCCACTTCATCATGGACTGTCTGGCCACAGTTCTTTACCACAG +
Preference number: 5 (lower is better)
Translates to: PRPSAAPSVLPWSVC*PLHHGLSGHSSLPQ
Trigger: CTGTGGTAAAGAACTGTGGCCAGACAGTCCATGATGAAGTGGCCAACAAACAGACCATGGAAGAACTGAAGGAGCTGCTGAAGGCCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140862.7
CDS-3UTR CAA 90 bp TGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGTTCACATCTACAGCATATTTTGCTaGTGTGTCCCCCTGACGGAT +
Preference number: 5 (lower is better)
Translates to: WFFWVPGPGLDTTQLVHIYSIFC*CVPLTD
Trigger: ATCCGTCAGGGGGACACACAAGCAAAATATGCTGTA...GATGTGAACTAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 90 bp ACCACCTTGTACTTGGGTTCGTTCCGGAAGGCATGTGCCCAGGCCTaGATCAGGTACAAGATCTTGTTCCGAACATTAACTTCCACTTGC +
Preference number: 5 (lower is better)
Translates to: TTLYLGSFRKACAQA*IRYKILFRTLTSTC
Trigger: GCAAGTGGAAGTTAATGTTCGGAACAAGATCTTGTACCTGATCCAGGCCTGGGCACATGCCTTCCGGAACGAACCCAAGTACAAGGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS-3UTR CAA 90 bp GGAGCCACATGGTTCTTCTGGGTACCAGGGCCAGGCCTGGACACCACACAGTTAGATGTGCTGTATATGTaGTTTTCTGTCTCATCCTCT +
Preference number: 5 (lower is better)
Translates to: GATWFFWVPGPGLDTTQLDVLYM*FSVSSS
Trigger: AGAGGATGAGACAGAAAACAACATATACAGCACATC...TAACTGTGTGGTGTCCAGGCCTGGCCCTGGTACCCAGAAGAACCATGTGGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 90 bp CTTGCCTCTTCAGCAGCTCCTTCAGTTCTTCCATGGTCTGTTTGTTaGCCACTTCATCATGGACTGTCTGGCCACAGTTCTTTACCACAG +
Preference number: 5 (lower is better)
Translates to: LASSAAPSVLPWSVC*PLHHGLSGHSSLPQ
Trigger: CTGTGGTAAAGAACTGTGGCCAGACAGTCCATGATGAAGTGGCCAACAAACAGACCATGGAAGAACTGAAGGAGCTGCTGAAGAGGCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 90 bp AGTTCTTCCATGGTCTGTTTGTTGGCCACTTCATCATGGACTGTCTaGCCACAGTTCTTTACCACAGACTCCATCACCTCCAGAGCATAC +
Preference number: 5 (lower is better)
Translates to: SSSMVCLLATSSWTV*PQFFTTDSITSRAY
Trigger: GTATGCTCTGGAGGTGATGGAGTCTGTGGTAAAGAACTGTGGCCAGACAGTCCATGATGAAGTGGCCAACAAACAGACCATGGAAGAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000140862.7
CDS-3UTR CAA 90 bp GAGACAGAGATACCTAAAGCTTCTACCCTTGCTGTGCAGGAGCCACATGGTTCTGATGTGCTGTATATGTaGTTTTCTGTCTCATCCTCT +
Preference number: 5 (lower is better)
Translates to: ETEIPKASTLAVQEPHGSDVLYM*FSVSSS
Trigger: AGAGGATGAGACAGAAAACAACATATACAGCACATC...AGAACCATGTGGCTCCTGCACAGCAAGGGTAGAAGCTTTAGGTATCTCTGTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 90 bp CTTTACCACAGACTCCATCACCTCCAGAGCATACAAAGCCACGTGTaGGTTCTTATCATTAACCTTCTTCTTGATGGAGTTTACAGCATA +
Preference number: 5 (lower is better)
Translates to: LYHRLHHLQSIQSHV*VLIINLLLDGVYSI
Trigger: TATGCTGTAAACTCCATCAAGAAGAAGGTTAATGATAAGAACCCACACGTGGCTTTGTATGCTCTGGAGGTGATGGAGTCTGTGGTAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000140862.7
CDS CCA 72 bp GTCAAAGGAGATGAGCTGGGCCTCACTGCCCTGTGCTaGCGGTCCCTGTGTAGGCGCTGGCTGGGCCACAGG +
Preference number: 6 (lower is better)
Translates to: VKGDELGLTALC*RSLCRRWLGHR
Trigger: CCTGTGGCCCAGCCAGCGCCTACACAGGGACCGCCAGCACAGGGCAGTGAGGCCCAGCTCATCTCCTTTGAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS GCA 72 bp GAGGTGCTGATGAGTTCACAGGCGAGGAATACAGGCTaGCAGCTGGGGGCGCAGAGGAAGCCAAGGGCGTGG +
Preference number: 6 (lower is better)
Translates to: EVLMSSQARNTG*QLGAQRKPRAW
Trigger: CCACGCCCTTGGCTTCCTCTGCGCCCCCAGCTGGCAGCCTGTATTCCTCGCCTGTGAACTCATCAGCACCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS GCA 72 bp CAGGGCGCTCAGAGCCCCTCGGGCGTCACGTATCTGTaGCAGCTTGTCCTGAAGGCCCTCGTAGTACAGCCT +
Preference number: 6 (lower is better)
Translates to: QGAQSPSGVTYL*QLVLKALVVQP
Trigger: AGGCTGTACTACGAGGGCCTTCAGGACAAGCTGGCACAGATACGTGACGCCCGAGGGGCTCTGAGCGCCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS CCA 72 bp CCTGAGAAGCCACGCTCTGGTAGCCTGGGGTTGGTGTaGGCTGGTAGGAGGAGTAGGCAGGACTGGTGGTGG +
Preference number: 6 (lower is better)
Translates to: PEKPRSGSLGLV*AGRRSRQDWWW
Trigger: CCACCACCAGTCCTGCCTACTCCTCCTACCAGCCCACACCAACCCCAGGCTACCAGAGCGTGGCTTCTCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS TCA 72 bp GTGCCCCAGGGGCACCTGTTGGGTACATGTAGGCGCTaGCCATGCTGGGATCTGCTGTTGTGCCAGGCATGC +
Preference number: 6 (lower is better)
Translates to: VPQGHLLGTCRR*PCWDLLLCQAC
Trigger: GCATGCCTGGCACAACAGCAGATCCCAGCATGGTCAGCGCCTACATGTACCCAACAGGTGCCCCTGGGGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 90 bp CTTCTGTCTCATGATCTCCAGTTTCTGTGCCAGCTGGATCTGGCGTaGACGCTCAGCCTCCTCAGCTGCCCGGCGCAGCTTCTCCCTGTG +
Preference number: 6 (lower is better)
Translates to: LLSHDLQFLCQLDLA*TLSLLSCPAQLLPV
Trigger: CACAGGGAGAAGCTGCGCCGGGCAGCTGAGGAGGCTGAGCGTCAACGCCAGATCCAGCTGGCACAGAAACTGGAGATCATGAGACAGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS TCA 72 bp CAGCTGCGGGTGCATGGTGTTGATGGACTGGAAGAGTaGCAGCACAGCCGAGTCGTTGGTGATGCTGCGTCC +
Preference number: 6 (lower is better)
Translates to: QLRVHGVDGLEE*QHSRVVGDAAS
Trigger: GGACGCAGCATCACCAACGACTCGGCTGTGCTGTCACTCTTCCAGTCCATCAACACCATGCACCCGCAGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS GCA 72 bp GCTGAGAGTCTGTCTCTGGAAGAGGAGCCTCTGCCATaGTGTTGGGGGCTGTATGTCCTTCTCCAGGCTGGG +
Preference number: 6 (lower is better)
Translates to: AESLSLEEEPLP*CWGLYVLLQAG
Trigger: CCCAGCCTGGAGAAGGACATACAGCCCCCAACAGCATGGCAGAGGCTCCTCTTCCAGAGACAGACTCTCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS GCA 72 bp TGCTCATGGCTCTCCTCCGACTCCCCATTCTGGTACTaGTCACTAAAGGGGCCGCTGCAGGGAGTTATGGGC +
Preference number: 6 (lower is better)
Translates to: CSWLSSDSPFWY*SLKGPLQGVMG
Trigger: GCCCATAACTCCCTGCAGCGGCCCCTTTAGTGAGCAGTACCAGAATGGGGAGTCGGAGGAGAGCCATGAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106203.9
CDS GCA 72 bp GGAAAGGCAGGCATCTGGGCGCGCATCTGGACAGTCTaGTTCTGTTGCTCCAGACGCATCTGCCGTTCCTTC +
Preference number: 6 (lower is better)
Translates to: GKAGIWARIWTV*FCCSRRICRSF
Trigger: GAAGGAACGGCAGATGCGTCTGGAGCAACAGAAGCAGACTGTCCAGATGCGCGCCCAGATGCCTGCCTTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS GCA 72 bp TCATCCAGCTGGTTGAGCAGCTCGAGCAGCTGCGGGTaGATGGTGTTGATGGACTCACTAAAGGGGCCGCTG +
Preference number: 6 (lower is better)
Translates to: SSSWLSSSSSCG*MVLMDSLKGPL
Trigger: CAGCGGCCCCTTTAGTGAGTCCATCAACACCATGCACCCGCAGCTGCTCGAGCTGCTCAACCAGCTGGATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135231.3
CDS GCA 72 bp CTGCGCTCATCCAGCTGGTTGAGCAGCTCGAGCAGCTaGGGGTGCATGGTGTTGATGGACTCACTAAAGGGG +
Preference number: 6 (lower is better)
Translates to: LRSSSWLSSSSS*GCMVLMDSLKG
Trigger: CCCCTTTAGTGAGTCCATCAACACCATGCACCCGCAGCTGCTCGAGCTGCTCAACCAGCTGGATGAGCGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135231.3
CDS CCA 72 bp AGTCTGTCTCTGGAAGAGGAGCCTCTGCCATGCTGTTaGGGGCTGTATGTCCTTCTCCAGGCTGGGCAGCAG +
Preference number: 6 (lower is better)
Translates to: SLSLEEEPLPCC*GLYVLLQAGQQ
Trigger: CTGCTGCCCAGCCTGGAGAAGGACATACAGCCCCCAACAGCATGGCAGAGGCTCCTCTTCCAGAGACAGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS CAA 72 bp GAGTCTGTCTCTGGAAGAGGAGCCTCTGCCATGCTGTaGGGGGCTGTATGTCCTTCTCCAGGCTGGGCAGCA +
Preference number: 6 (lower is better)
Translates to: ESVSGRGASAML*GAVCPSPGWAA
Trigger: TGCTGCCCAGCCTGGAGAAGGACATACAGCCCCCAACAGCATGGCAGAGGCTCCTCTTCCAGAGACAGACTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS CAA 72 bp TGGTTGAGCAGCTCGAGCAGCTGCGGGTGCATGGTGTaGATGGACTCACTAAAGGGGCCGCTGCAGGGAGTT +
Preference number: 6 (lower is better)
Translates to: WLSSSSSCGCMV*MDSLKGPLQGV
Trigger: AACTCCCTGCAGCGGCCCCTTTAGTGAGTCCATCAACACCATGCACCCGCAGCTGCTCGAGCTGCTCAACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135231.3
CDS CAA 90 bp GACAGCACAGCCGAGTCGTTGGTGATGCTGCGTCCCCGCATGTGGTaGCTCTTCATGCGGTTGACAAAAGTGCTCACGGCATTCTGCAGG +
Preference number: 6 (lower is better)
Translates to: DSTAESLVMLRPRMW*LFMRLTKVLTAFCR
Trigger: CCTGCAGAATGCCGTGAGCACTTTTGTCAACCGCATGAAGAGCAACCACATGCGGGGACGCAGCATCACCAACGACTCGGCTGTGCTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 90 bp TCATCCAGCTGGTTGAGCAGCTCGAGCAGCTGCGGGTGCATGGTGTaGATGGACTGGAAGAGTGACAGCACAGCCGAGTCGTTGGTGATG +
Preference number: 6 (lower is better)
Translates to: SSSWLSSSSSCGCMV*MDWKSDSTAESLVM
Trigger: CATCACCAACGACTCGGCTGTGCTGTCACTCTTCCAGTCCATCAACACCATGCACCCGCAGCTGCTCGAGCTGCTCAACCAGCTGGATGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS TCA 72 bp TGGACTGGAAGAGTGACAGCACAGCCGAGTCGTTGGTaGTGCTGCGTCCCCGCATGTGGTTGCTCTTCATGC +
Preference number: 6 (lower is better)
Translates to: WTGRVTAQPSRW*CCVPACGCSSC
Trigger: GCATGAAGAGCAACCACATGCGGGGACGCAGCATCACCAACGACTCGGCTGTGCTGTCACTCTTCCAGTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS GCA 72 bp CATAGCAGGGCTCACACACGCGCACCTCCTTCTCAATaGCGAACTTGGGGATGGTGGAGTACTTGGAGGAGC +
Preference number: 6 (lower is better)
Translates to: HSRAHTRAPPSQ*RTWGWWSTWRS
Trigger: GCTCCTCCAAGTACTCCACCATCCCCAAGTTCGGCATTGAGAAGGAGGTGCGCGTGTGTGAGCCCTGCTATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000140862.7
CDS CCA 72 bp TTGCGGGTCACCACCCCAAACTGTACTCTGCACCGATaGCATTCCTCAGCATCCACCCAGTCAGGGGCTCTT +
Preference number: 6 (lower is better)
Translates to: LRVTTPNCTLHR*HSSASTQSGAL
Trigger: AAGAGCCCCTGACTGGGTGGATGCTGAGGAATGCCATCGGTGCAGAGTACAGTTTGGGGTGGTGACCCGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000140862.7
CDS CCA 72 bp AGGAACTGCTCATGGCTCTCCTCCGACTCCCCATTCTaGTACTGCTCACTAAAGGGGCCGCTGCAGGGAGTT +
Preference number: 6 (lower is better)
Translates to: RNCSWLSSDSPF*YCSLKGPLQGV
Trigger: AACTCCCTGCAGCGGCCCCTTTAGTGAGCAGTACCAGAATGGGGAGTCGGAGGAGAGCCATGAGCAGTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106203.9
CDS CAA 72 bp CGGTTGACAAAAGTGCTCACGGCATTCTGCAGGGCCTaGAGGAACTGCTCATGGCTCTCCTCCGACTCCCCA +
Preference number: 6 (lower is better)
Translates to: RLTKVLTAFCRA*RNCSWLSSDSP
Trigger: TGGGGAGTCGGAGGAGAGCCATGAGCAGTTCCTCAAGGCCCTGCAGAATGCCGTGAGCACTTTTGTCAACCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 72 bp GCCGAGTCGTTGGTGATGCTGCGTCCCCGCATGTGGTaGCTCTTCATGCGGTTGACAAAAGTGCTCACGGCA +
Preference number: 6 (lower is better)
Translates to: AESLVMLRPRMW*LFMRLTKVLTA
Trigger: TGCCGTGAGCACTTTTGTCAACCGCATGAAGAGCAACCACATGCGGGGACGCAGCATCACCAACGACTCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 72 bp AGGCATCTGGGCGCGCATCTGGACAGTCTGCTTCTGTaGCTCCAGACGCATCTGCCGTTCCTTCTCCTGTTC +
Preference number: 6 (lower is better)
Translates to: RHLGAHLDSLLL*LQTHLPFLLLF
Trigger: GAACAGGAGAAGGAACGGCAGATGCGTCTGGAGCAACAGAAGCAGACTGTCCAGATGCGCGCCCAGATGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS CAA 90 bp TCGTTGGTGATGCTGCGTCCCCGCATGTGGTTGCTCTTCATGCGGTaGACAAAAGTGCTCACGGCATTCTGCAGGGCCTTGAGGAACTGC +
Preference number: 6 (lower is better)
Translates to: SLVMLRPRMWLLFMR*TKVLTAFCRALRNC
Trigger: GCAGTTCCTCAAGGCCCTGCAGAATGCCGTGAGCACTTTTGTCAACCGCATGAAGAGCAACCACATGCGGGGACGCAGCATCACCAACGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 90 bp TGCATGGTGTTGATGGACTGGAAGAGTGACAGCACAGCCGAGTCGTaGGTGATGCTGCGTCCCCGCATGTGGTTGCTCTTCATGCGGTTG +
Preference number: 6 (lower is better)
Translates to: CMVLMDWKSDSTAES*VMLRPRMWLLFMRL
Trigger: CAACCGCATGAAGAGCAACCACATGCGGGGACGCAGCATCACCAACGACTCGGCTGTGCTGTCACTCTTCCAGTCCATCAACACCATGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS GCA 72 bp AGTGATGCTTGCGGGTCACCACCCCAAACTGTACTCTaGACCGATGGCATTCCTCAGCATCCACCCAGTCAG +
Preference number: 6 (lower is better)
Translates to: SDACGSPPQTVL*TDGIPQHPPSQ
Trigger: CTGACTGGGTGGATGCTGAGGAATGCCATCGGTGCAGAGTACAGTTTGGGGTGGTGACCCGCAAGCATCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000140862.7
CDS GCA 72 bp TCATCCAGCTGGTTGAGCAGCTCGAGCAGCTGCGGGTaGATGGTGTTGATGGACTGGAAGAGTGACAGCACA +
Preference number: 6 (lower is better)
Translates to: SSSWLSSSSSCG*MVLMDWKSDST
Trigger: TGTGCTGTCACTCTTCCAGTCCATCAACACCATGCACCCGCAGCTGCTCGAGCTGCTCAACCAGCTGGATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 72 bp TGTCCCCCTGACGGATCAGGTCGCAGATCTGTAGAATaGACTCCCAGTCTGTCTCCAACAGAAGCTGGCTGG +
Preference number: 6 (lower is better)
Translates to: CPPDGSGRRSVE*TPSLSPTEAGW
Trigger: CCAGCCAGCTTCTGTTGGAGACAGACTGGGAGTCCATTCTACAGATCTGCGACCTGATCCGTCAGGGGGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000140862.7
CDS CCA 72 bp ACAGCCGAGTCGTTGGTGATGCTGCGTCCCCGCATGTaGTTGCTCTTCATGCGGTTGACAAAAGTGCTCACG +
Preference number: 6 (lower is better)
Translates to: TAESLVMLRPRM*LLFMRLTKVLT
Trigger: CGTGAGCACTTTTGTCAACCGCATGAAGAGCAACCACATGCGGGGACGCAGCATCACCAACGACTCGGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 72 bp AGGAACTGCTCATGGCTCTCCTCCGACTCCCCATTCTaGTACTCACTAAAGGGGCCGCTGCAGGGAGTTATG +
Preference number: 6 (lower is better)
Translates to: RNCSWLSSDSPF*YSLKGPLQGVM
Trigger: CATAACTCCCTGCAGCGGCCCCTTTAGTGAGTACCAGAATGGGGAGTCGGAGGAGAGCCATGAGCAGTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106205.9
CDS CAA 72 bp ATGCTGCGTCCCCGCATGTGGTTGCTCTTCATGCGGTaGACAAAAGTGCTCACGGCATTCTGCAGGGCCTTG +
Preference number: 6 (lower is better)
Translates to: MLRPRMWLLFMR*TKVLTAFCRAL
Trigger: CAAGGCCCTGCAGAATGCCGTGAGCACTTTTGTCAACCGCATGAAGAGCAACCACATGCGGGGACGCAGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 72 bp TTGATGGACTGGAAGAGTGACAGCACAGCCGAGTCGTaGGTGATGCTGCGTCCCCGCATGTGGTTGCTCTTC +
Preference number: 6 (lower is better)
Translates to: LMDWKSDSTAES*VMLRPRMWLLF
Trigger: GAAGAGCAACCACATGCGGGGACGCAGCATCACCAACGACTCGGCTGTGCTGTCACTCTTCCAGTCCATCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 90 bp CTCTTCATGCGGTTGACAAAAGTGCTCACGGCATTCTGCAGGGCCTaGAGGAACTGCTCATGGCTCTCCTCCGACTCCCCATTCTGGTAC +
Preference number: 6 (lower is better)
Translates to: LFMRLTKVLTAFCRA*RNCSWLSSDSPFWY
Trigger: GTACCAGAATGGGGAGTCGGAGGAGAGCCATGAGCAGTTCCTCAAGGCCCTGCAGAATGCCGTGAGCACTTTTGTCAACCGCATGAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 90 bp CCTTCTACCTTCATGATCTGGTATGTGTCCTGGACCACCTTGTACTaGGGTTCGTTCCGGAAGGCATGTGCCCAGGCCTTCAGCAGCTCC +
Preference number: 6 (lower is better)
Translates to: PSTFMIWYVSWTTLY*GSFRKACAQAFSSS
Trigger: GGAGCTGCTGAAGGCCTGGGCACATGCCTTCCGGAACGAACCCAAGTACAAGGTGGTCCAGGACACATACCAGATCATGAAGGTAGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140862.7
CDS GCA 72 bp AGCTGGGGGCGCAGAGGAAGCCAAGGGCGTGGGCTCTaGCTTTGGATGTGCTGTATATGTTGTTTTCTGTCT +
Preference number: 6 (lower is better)
Translates to: SWGRRGSQGRGL*LWMCCICCFLS
Trigger: AGACAGAAAACAACATATACAGCACATCCAAAGGCAGAGCCCACGCCCTTGGCTTCCTCTGCGCCCCCAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS GCA 72 bp TCCTGTTCCTGCAGGCGCTGGATAGCTAGCTGTCTCTaGACCTCCAGGTACTCCTGCTTCTTCTGTCTCATG +
Preference number: 6 (lower is better)
Translates to: SCSCRRWIASCL*TSRYSCFFCLM
Trigger: CATGAGACAGAAGAAGCAGGAGTACCTGGAGGTGCAGAGACAGCTAGCTATCCAGCGCCTGCAGGAACAGGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS GCA 72 bp ATCTGGACAGTCTGCTTCTGTTGCTCCAGACGCATCTaGCGTTCCTTCTCCTGTTCCTGCAGGCGCTGGATA +
Preference number: 6 (lower is better)
Translates to: IWTVCFCCSRRI*RSFSCSCRRWI
Trigger: TATCCAGCGCCTGCAGGAACAGGAGAAGGAACGGCAGATGCGTCTGGAGCAACAGAAGCAGACTGTCCAGAT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000135231.3
CDS GCA 72 bp GACCACCTTGTACTTGGGTTCGTTCCGGAAGGCATGTaGCCAGGCCTTCAGCAGCTCCTTCAGTTCTTCCAT +
Preference number: 6 (lower is better)
Translates to: DHLVLGFVPEGM*PGLQQLLQFFH
Trigger: ATGGAAGAACTGAAGGAGCTGCTGAAGGCCTGGGCACATGCCTTCCGGAACGAACCCAAGTACAAGGTGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140862.7
CDS CAA 72 bp GGGGCGCAGAGGAAGCCAAGGGCGTGGGCTCTGCCTTaGGATGTGCTGTATATGTTGTTTTCTGTCTCATCC +
Preference number: 6 (lower is better)
Translates to: GAQRKPRAWALP*DVLYMLFSVSS
Trigger: GGATGAGACAGAAAACAACATATACAGCACATCCAAAGGCAGAGCCCACGCCCTTGGCTTCCTCTGCGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 90 bp CCTTCTACCTTCATGATCTGGTATGTGTCCTGGACCACCTTGTACTaGGGTTCGTTCCGGAAGGCATGTGCCCAGGCCTGGATCAGGTAC +
Preference number: 6 (lower is better)
Translates to: PSTFMIWYVSWTTLY*GSFRKACAQAWIRY
Trigger: GTACCTGATCCAGGCCTGGGCACATGCCTTCCGGAACGAACCCAAGTACAAGGTGGTCCAGGACACATACCAGATCATGAAGGTAGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 90 bp TGCCAGCTGGGGGCGCAGAGGAAGCCAAGGGCGTGGGCTCTGCCTTaGGATGTGCTGTATATGTTGTTTTCTGTCTCATCCTCTCTTTCT +
Preference number: 6 (lower is better)
Translates to: CQLGAQRKPRAWALP*DVLYMLFSVSSSLS
Trigger: AGAAAGAGAGGATGAGACAGAAAACAACATATACAGCACATCCAAAGGCAGAGCCCACGCCCTTGGCTTCCTCTGCGCCCCCAGCTGGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 72 bp TGTAGAATGGACTCCCAGTCTGTCTCCAACAGAAGCTaGCTGGTGGCTTTGTCTAGGAGACGCTCGAAGGTG +
Preference number: 6 (lower is better)
Translates to: CRMDSQSVSNRS*LVALSRRRSKV
Trigger: CACCTTCGAGCGTCTCCTAGACAAAGCCACCAGCCAGCTTCTGTTGGAGACAGACTGGGAGTCCATTCTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000140862.7
CDS CCA 72 bp GGGCGCAGAGGAAGCCAAGGGCGTGGGCTCTGCCTTTaGATGTGCTGTATATGTTGTTTTCTGTCTCATCCT +
Preference number: 6 (lower is better)
Translates to: GRRGSQGRGLCL*MCCICCFLSHP
Trigger: AGGATGAGACAGAAAACAACATATACAGCACATCCAAAGGCAGAGCCCACGCCCTTGGCTTCCTCTGCGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 90 bp ACATGTCCTTCTACCTTCATGATCTGGTATGTGTCCTGGACCACCTaGTACTTGGGTTCGTTCCGGAAGGCATGTGCCCAGGCCTGGATC +
Preference number: 6 (lower is better)
Translates to: TCPSTFMIWYVSWTT*YLGSFRKACAQAWI
Trigger: GATCCAGGCCTGGGCACATGCCTTCCGGAACGAACCCAAGTACAAGGTGGTCCAGGACACATACCAGATCATGAAGGTAGAAGGACATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 90 bp ACATGTCCTTCTACCTTCATGATCTGGTATGTGTCCTGGACCACCTaGTACTTGGGTTCGTTCCGGAAGGCATGTGCCCAGGCCTTCAGC +
Preference number: 6 (lower is better)
Translates to: TCPSTFMIWYVSWTT*YLGSFRKACAQAFS
Trigger: GCTGAAGGCCTGGGCACATGCCTTCCGGAACGAACCCAAGTACAAGGTGGTCCAGGACACATACCAGATCATGAAGGTAGAAGGACATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140862.7
CDS CCA 72 bp ATTCTGCATATTGTACGGCTGGTAGCCCATGGACATTaGCTGGCTCCCCATGTAGCCTATGTTGCTGGTCTG +
Preference number: 6 (lower is better)
Translates to: ILHIVRLVAHGH*LAPHVAYVAGL
Trigger: CAGACCAGCAACATAGGCTACATGGGGAGCCAGCCAATGTCCATGGGCTACCAGCCGTACAATATGCAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 72 bp GTGCCCAGGCCTTCAGCAGCTCCTTCAGTTCTTCCATaGTCTGTTTGTTGGCCACTTCATCATGGACTGTCT +
Preference number: 6 (lower is better)
Translates to: VPRPSAAPSVLP*SVCWPLHHGLS
Trigger: AGACAGTCCATGATGAAGTGGCCAACAAACAGACCATGGAAGAACTGAAGGAGCTGCTGAAGGCCTGGGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140862.7
CDS CAA 72 bp TCTACCTTCATGATCTGGTATGTGTCCTGGACCACCTaGTACTTGGGTTCGTTCCGGAAGGCATGTGCCCAG +
Preference number: 6 (lower is better)
Translates to: STFMIWYVSWTT*YLGSFRKACAQ
Trigger: CTGGGCACATGCCTTCCGGAACGAACCCAAGTACAAGGTGGTCCAGGACACATACCAGATCATGAAGGTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000140862.7
CDS CAA 72 bp GATTCTGCATATTGTACGGCTGGTAGCCCATGGACATaGGCTGGCTCCCCATGTAGCCTATGTTGCTGGTCT +
Preference number: 6 (lower is better)
Translates to: DSAYCTAGSPWT*AGSPCSLCCWS
Trigger: AGACCAGCAACATAGGCTACATGGGGAGCCAGCCAATGTCCATGGGCTACCAGCCGTACAATATGCAGAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 90 bp TCGTTCCGGAAGGCATGTGCCCAGGCCTGGATCAGGTACAAGATCTaGTTCCGAACATTAACTTCCACTTGCCTCTTCAGCAGCTCCTTC +
Preference number: 6 (lower is better)
Translates to: SFRKACAQAWIRYKI*FRTLTSTCLFSSSF
Trigger: GAAGGAGCTGCTGAAGAGGCAAGTGGAAGTTAATGTTCGGAACAAGATCTTGTACCTGATCCAGGCCTGGGCACATGCCTTCCGGAACGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 90 bp GCCCAGGCCTTCAGCAGCTCCTTCAGTTCTTCCATGGTCTGTTTGTaGGCCACTTCATCATGGACTGTCTGGCCACAGTTCTTTACCACA +
Preference number: 6 (lower is better)
Translates to: AQAFSSSFSSSMVCL*ATSSWTVWPQFFTT
Trigger: TGTGGTAAAGAACTGTGGCCAGACAGTCCATGATGAAGTGGCCAACAAACAGACCATGGAAGAACTGAAGGAGCTGCTGAAGGCCTGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140862.7
CDS CAA 90 bp TGTGCCCAGGCCTTCAGCAGCTCCTTCAGTTCTTCCATGGTCTGTTaGTTGGCCACTTCATCATGGACTGTCTGGCCACAGTTCTTTACC +
Preference number: 6 (lower is better)
Translates to: CAQAFSSSFSSSMVC*LATSSWTVWPQFFT
Trigger: GGTAAAGAACTGTGGCCAGACAGTCCATGATGAAGTGGCCAACAAACAGACCATGGAAGAACTGAAGGAGCTGCTGAAGGCCTGGGCACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140862.7
CDS CAA 90 bp TCCACTTGCCTCTTCAGCAGCTCCTTCAGTTCTTCCATGGTCTGTTaGTTGGCCACTTCATCATGGACTGTCTGGCCACAGTTCTTTACC +
Preference number: 6 (lower is better)
Translates to: STCLFSSSFSSSMVC*LATSSWTVWPQFFT
Trigger: GGTAAAGAACTGTGGCCAGACAGTCCATGATGAAGTGGCCAACAAACAGACCATGGAAGAACTGAAGGAGCTGCTGAAGAGGCAAGTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 72 bp ATGGTCTGTTTGTTGGCCACTTCATCATGGACTGTCTaGCCACAGTTCTTTACCACAGACTCCATCACCTCC +
Preference number: 6 (lower is better)
Translates to: MVCLLATSSWTV*PQFFTTDSITS
Trigger: GGAGGTGATGGAGTCTGTGGTAAAGAACTGTGGCCAGACAGTCCATGATGAAGTGGCCAACAAACAGACCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000140862.7
CDS CCA 72 bp CCACTTGCCTCTTCAGCAGCTCCTTCAGTTCTTCCATaGTCTGTTTGTTGGCCACTTCATCATGGACTGTCT +
Preference number: 6 (lower is better)
Translates to: PLASSAAPSVLP*SVCWPLHHGLS
Trigger: AGACAGTCCATGATGAAGTGGCCAACAAACAGACCATGGAAGAACTGAAGGAGCTGCTGAAGAGGCAAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 72 bp TACTTGGGTTCGTTCCGGAAGGCATGTGCCCAGGCCTaGATCAGGTACAAGATCTTGTTCCGAACATTAACT +
Preference number: 6 (lower is better)
Translates to: YLGSFRKACAQA*IRYKILFRTLT
Trigger: AGTTAATGTTCGGAACAAGATCTTGTACCTGATCCAGGCCTGGGCACATGCCTTCCGGAACGAACCCAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CCA 72 bp ACATGTCCTTCTACCTTCATGATCTGGTATGTGTCCTaGACCACCTTGTACTTGGGTTCGTTCCGGAAGGCA +
Preference number: 6 (lower is better)
Translates to: TCPSTFMIWYVS*TTLYLGSFRKA
Trigger: TGCCTTCCGGAACGAACCCAAGTACAAGGTGGTCCAGGACACATACCAGATCATGAAGGTAGAAGGACATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000140862.7
CDS CAA 72 bp AAGGCATGTGCCCAGGCCTGGATCAGGTACAAGATCTaGTTCCGAACATTAACTTCCACTTGCCTCTTCAGC +
Preference number: 6 (lower is better)
Translates to: KACAQAWIRYKI*FRTLTSTCLFS
Trigger: GCTGAAGAGGCAAGTGGAAGTTAATGTTCGGAACAAGATCTTGTACCTGATCCAGGCCTGGGCACATGCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS CAA 90 bp ACTTGCCTCTTCAGCAGCTCCTTCAGTTCTTCCATGGTCTGTTTGTaGGCCACTTCATCATGGACTGTCTGGCCACAGTTCTTTACCACA +
Preference number: 6 (lower is better)
Translates to: TCLFSSSFSSSMVCL*ATSSWTVWPQFFTT
Trigger: TGTGGTAAAGAACTGTGGCCAGACAGTCCATGATGAAGTGGCCAACAAACAGACCATGGAAGAACTGAAGGAGCTGCTGAAGAGGCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
CDS TCA 72 bp ATGGAGTTTACAGCATATTTTGCTTGTGTGTCCCCCTaGCGGATCAGGTCGCAGATCTGTAGAATGGACTCC +
Preference number: 6 (lower is better)
Translates to: MEFTAYFACVSP*RIRSQICRMDS
Trigger: GGAGTCCATTCTACAGATCTGCGACCTGATCCGTCAGGGGGACACACAAGCAAAATATGCTGTAAACTCCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9
ENSMUST00000140862.7
CDS GCA 72 bp AGGTACAAGATCTTGTTCCGAACATTAACTTCCACTTaGCTCTTCAGCAGCTCCTTCAGTTCTTCCATGGTC +
Preference number: 6 (lower is better)
Translates to: RYKILFRTLTST*LFSSSFSSSMV
Trigger: GACCATGGAAGAACTGAAGGAGCTGCTGAAGAGGCAAGTGGAAGTTAATGTTCGGAACAAGATCTTGTACCT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106203.9
ENSMUST00000106205.9