RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HDX (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034551

Ensembl transcript IDs: ENSMUST00000038472.7, ENSMUST00000113422.9

Found 363 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGCTGCTaGTCACCTGCACTAGGGGAGCACATATTCCTCCCTCAAAGCTCA +
Preference number: 1 (lower is better)
Translates to: RRRRRRRRRRRWRSC*SPALGEHIFLPQSS
Trigger: TGAGCTTTGAGGGAGGAATATGTGCTCCCCTAGTGCAGGTGAGCAGCAGCTCCTCCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR GCA 90 bp GAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGCTGCTGCTCACCTaGACTAGGGGAGCACATATTCCTCCCTCAAAGCTCAGGATGATG +
Preference number: 1 (lower is better)
Translates to: EEEEEEEEVEELLLT*TRGAHIPPSKLRMM
Trigger: CATCATCCTGAGCTTTGAGGGAGGAATATGTGCTCCCCTAGTGCAGGTGAGCAGCAGCTCCTCCACCTCCTCCTCCTCCTCCTCCTCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CCA 90 bp AAACGGAACCTAGGTGTGGTGGGGCACATCTGCCATCCAGGCATTTaGGAAACAAAGGCAGGAACAGCAGGACTCAAAGCCATCCTCAGC +
Preference number: 1 (lower is better)
Translates to: KRNLGVVGHICHPGI*ETKAGTAGLKAILS
Trigger: GCTGAGGATGGCTTTGAGTCCTGCTGTTCCTGCCTTTGTTTCCCAAATGCCTGGATGGCAGATGTGCCCCACCACACCTAGGTTCCGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR GCA 90 bp GGTTCCTACTCAAACAAACGGAACCTAGGTGTGGTGGGGCACATCTaGCATCCAGGCATTTGGGAAACAAAGGCAGGAACAGCAGGACTC +
Preference number: 1 (lower is better)
Translates to: GSYSNKRNLGVVGHI*HPGIWETKAGTAGL
Trigger: GAGTCCTGCTGTTCCTGCCTTTGTTTCCCAAATGCCTGGATGGCAGATGTGCCCCACCACACCTAGGTTCCGTTTGTTTGAGTAGGAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CCA 90 bp GCAAGGTCTGAAAGACAGAGAACTCAGAACTCAGGAGACACAGACTaGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATGAG +
Preference number: 1 (lower is better)
Translates to: ARSERQRTQNSGDTD*QDPLAEHMEDRSHE
Trigger: CTCATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCCTGAGTTCTGAGTTCTCTGTCTTTCAGACCTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 90 bp GAAGACAGAAGCCATGAGAATAGTTACAGCAGAGTTGGCAATGGCTaGGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAG +
Preference number: 1 (lower is better)
Translates to: EDRSHENSYSRVGNG*EQGSHREPEDKHGE
Trigger: CTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCATTGCCAACTCTGCTGTAACTATTCTCATGGCTTCTGTCTTC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 90 bp ACTGACATCTTCATCTTCAGAGTCTTCCTCTGCATCCGATTCCTCTaGCTCAGATTCCAACAGCAGCAAGAGCAGCTCAGAGTCCTCCAG +
Preference number: 1 (lower is better)
Translates to: TDIFIFRVFLCIRFL*LRFQQQQEQLRVLQ
Trigger: CTGGAGGACTCTGAGCTGCTCTTGCTGCTGTTGGAATCTGAGTCAGAGGAATCGGATGCAGAGGAAGACTCTGAAGATGAAGATGTCAGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR GCA 90 bp CAGAGGGAGAGGATTGCTGTCCAGACCTGTTCTGCAAGTGCAGAGTaGTTCTCCAATCTTCCCTCATGTTTATGCAGCTTTGGTGGCAAT +
Preference number: 1 (lower is better)
Translates to: QRERIAVQTCSASAE*FSNLPSCLCSFGGN
Trigger: ATTGCCACCAAAGCTGCATAAACATGAGGGAAGATTGGAGAAGCACTCTGCACTTGCAGAACAGGTCTGGACAGCAATCCTCTCCCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 90 bp ATGCTTCAGCCATTCTTTCAAGGATGGTTACCCCAAGACAGCCCATaGAATACCCGGTTTGTCATCAATTTCTTCACTTCCATGTCTCGG +
Preference number: 1 (lower is better)
Translates to: MLQPFFQGWLPQDSP*NTRFVINFFTSMSR
Trigger: CCGAGACATGGAAGTGAAGAAATTGATGACAAACCGGGTATTTCATGGGCTGTCTTGGGGTAACCATCCTTGAAAGAATGGCTGAAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR GCA 90 bp TGTTCTGCAAGTGCAGAGTGCTTCTCCAATCTTCCCTCATGTTTATaGAGCTTTGGTGGCAATAATCAACTCAAAAGTCCCACAGACTGG +
Preference number: 1 (lower is better)
Translates to: CSASAECFSNLPSCL*SFGGNNQLKSPTDW
Trigger: CCAGTCTGTGGGACTTTTGAGTTGATTATTGCCACCAAAGCTGCATAAACATGAGGGAAGATTGGAGAAGCACTCTGCACTTGCAGAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 90 bp ACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCCCCATCTCCTaGAAGAAGAAGCCCAGACTGCAAGGAATAACCCAGAGTTCTACA +
Preference number: 1 (lower is better)
Translates to: TEKEISEMVLEIPIS*KKKPRLQGITQSST
Trigger: TGTAGAACTCTGGGTTATTCCTTGCAGTCTGGGCTTCTTCTTTCAGGAGATGGGGATTTCCAGGACCATTTCCGATATCTCTTTTTCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 90 bp AAAAACTGTCAAGGAACTCAGACCATTGCATACGTGTCACTTGAATaGACCCAAGGCATCTGGTTTATTGGGTCAGCTGCCAGCAGAAAA +
Preference number: 1 (lower is better)
Translates to: KNCQGTQTIAYVSLE*TQGIWFIGSAASRK
Trigger: TTTTCTGCTGGCAGCTGACCCAATAAACCAGATGCCTTGGGTTCATTCAAGTGACACGTATGCAATGGTCTGAGTTCCTTGACAGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 90 bp GTCATTGTAGTACAGAAACCAGAAGCTGAACAAAGAAATCAGCACTaGCATCTTCATCTTCAGAGTCTTCCTCTGCATCCGATTCCTCTG +
Preference number: 1 (lower is better)
Translates to: VIVVQKPEAEQRNQH*HLHLQSLPLHPIPL
Trigger: CAGAGGAATCGGATGCAGAGGAAGACTCTGAAGATGAAGATGTCAGTGCTGATTTCTTTGTTCAGCTTCTGGTTTCTGTACTACAATGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CCA 90 bp CATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTaGCAAAGGGCATGGCAGAGTGCTGTCTGTCAAGGTAAACACAAC +
Preference number: 1 (lower is better)
Translates to: HKLVGYFIRALQSIA*QRAWQSAVCQGKHN
Trigger: GTTGTGTTTACCTTGACAGACAGCACTCTGCCATGCCCTTTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CCA 90 bp GGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAAGGGCATaGCAGAGTGCTGTCTGTCAAGGTAAACACAACTTCAAAAAGAAA +
Preference number: 1 (lower is better)
Translates to: GYFIRALQSIAWQRA*QSAVCQGKHNFKKK
Trigger: TTTCTTTTTGAAGTTGTGTTTACCTTGACAGACAGCACTCTGCCATGCCCTTTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 90 bp ACAGAAGGATGGATTCAAGGACCAGTCTGTTATTCTGGAAGGACTTaGTTTAATGGAAGAGGACTATCAGTTTATACATATGCACCCCTT +
Preference number: 1 (lower is better)
Translates to: TEGWIQGPVCYSGRT*FNGRGLSVYTYAPL
Trigger: AAGGGGTGCATATGTATAAACTGATAGTCCTCTTCCATTAAATCAAGTCCTTCCAGAATAACAGACTGGTCCTTGAATCCATCCTTCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CCA 90 bp TATAGTAGTTTCATGGTTTTCCTATTGAAGTTCTTGGGATTGAACTaGGGCCTTGTGTACATGCTAAGCAAGTGTCCCAGTTTGTTTGTT +
Preference number: 1 (lower is better)
Translates to: YSSFMVFLLKFLGLN*GLVYMLSKCPSLFV
Trigger: AACAAACAAACTGGGACACTTGCTTAGCATGTACACAAGGCCCCAGTTCAATCCCAAGAACTTCAATAGGAAAACCATGAAACTACTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 90 bp AGTAGCTGTTTCTGTCTTTGCAGAAATGAGCTCTTGGACATCTTTTaGGGTCTTGATATTAACAATATACAGAACACAGGATGTGACTGG +
Preference number: 1 (lower is better)
Translates to: SSCFCLCRNELLDIF*GLDINNIQNTGCDW
Trigger: CCAGTCACATCCTGTGTTCTGTATATTGTTAATATCAAGACCTCAAAAGATGTCCAAGAGCTCATTTCTGCAAAGACAGAAACAGCTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 90 bp TACAGCAGTCTGAGATTGACAGAAGAGTTCATTATACGATTAAAGTaGTGTTTGTTGTACAGAAGGATGGATTCAAGGACCAGTCTGTTA +
Preference number: 1 (lower is better)
Translates to: YSSLRLTEEFIIRLK*CLLYRRMDSRTSLL
Trigger: TAACAGACTGGTCCTTGAATCCATCCTTCTGTACAACAAACATCACTTTAATCGTATAATGAACTCTTCTGTCAATCTCAGACTGCTGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CCA 90 bp GTTGCTAAGATGTTTGCTCACCTTTTATACACAGATTCACTTCCATaGAGTTTTCTCAAATGTATAAAGCTGAGTGAAGAGAACATGACA +
Preference number: 1 (lower is better)
Translates to: VAKMFAHLLYTDSLP*SFLKCIKLSEENMT
Trigger: TGTCATGTTCTCTTCACTCAGCTTTATACATTTGAGAAAACTCCATGGAAGTGAATCTGTGTATAAAAGGTGAGCAAACATCTTAGCAAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR GCA 90 bp TGTATTGTAGCCACTATATCTTGTCATTCCTTCACAGCATATGTTTaGTTTAACAATGTGTTTTTCCAGTTGAAGACTGTTTGGGAAACA +
Preference number: 1 (lower is better)
Translates to: CIVATISCHSFTAYV*FNNVFFQLKTVWET
Trigger: TGTTTCCCAAACAGTCTTCAACTGGAAAAACACATTGTTAAAGCAAACATATGCTGTGAAGGAATGACAAGATATAGTGGCTACAATACA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGGTGGTGGGGCACATCTaGCATCCAGGCATTTGGGAA +
Preference number: 2 (lower is better)
Translates to: TQRARRQAWRAKEEAVREVVGHI*HPGIWE
Trigger: TTCCCAAATGCCTGGATGGCAGATGTGCCCCACCAC...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGAGTGGTGGGGCACATCTaGCATCCAGGCATTTGGGAA +
Preference number: 2 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRVVGHI*HPGIWE
Trigger: TTCCCAAATGCCTGGATGGCAGATGTGCCCCACCAC...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATCAACAGGTGTCAGAATaGTGCCAAGAGACGCTGGGA +
Preference number: 2 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHQQVSE*CQETLG
Trigger: TCCCAGCGTCTCTTGGCACCATTCTGACACCTGTTG...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGCAGGTGTCAGAATGGTaGCAAGAGACGCTGGGAAAA +
Preference number: 2 (lower is better)
Translates to: TQRARRQAWRAKEEAVREQVSEW*QETLGK
Trigger: TTTTCCCAGCGTCTCTTGGCACCATTCTGACACCTG...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATCAGCAGAGTTGGCAATaGCTGAGAACAAGGCTCACA +
Preference number: 2 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHQQSWQ*LRTRLT
Trigger: TGTGAGCCTTGTTCTCAGCCATTGCCAACTCTGCTG...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGTGCCATCCAGGCATTTaGGAAACAAAGGCAGGAACA +
Preference number: 2 (lower is better)
Translates to: TQRARRQAWRAKEEAVRECHPGI*ETKAGT
Trigger: TGTTCCTGCCTTTGTTTCCCAAATGCCTGGATGGCA...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGACAGCAGAGTTGGCAATaGCTGAGAACAAGGCTCACA +
Preference number: 2 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRQQSWQ*LRTRLT
Trigger: TGTGAGCCTTGTTCTCAGCCATTGCCAACTCTGCTG...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGGCTATATTGGAAATATaGGGCCAGATTGGGCTACAG +
Preference number: 2 (lower is better)
Translates to: TQRARRQAWRAKEEAVREAILEI*GQIGLQ
Trigger: CTGTAGCCCAATCTGGCCTCATATTTCCAATATAGC...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGCATTTCTTTGTGTTTTaGAGGCCAGCTTTCCTCAGG +
Preference number: 2 (lower is better)
Translates to: TQRARRQAWRAKEEAVREHFFVF*RPAFLR
Trigger: CCTGAGGAAAGCTGGCCTTCAAAACACAAAGAAATG...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGAGTCCTAACTAGACTGTaGGGACCCACAGCTTCTATT +
Preference number: 2 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRVLTRL*GPTASI
Trigger: AATAGAAGCTGTGGGTCCTCACAGTCTAGTTAGGAC...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTAGGTGGAGGAGCTGCTaGTCACCTGCACTAGGGGAG +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSRWRSC*SPALGE
Trigger: CTCCCCTAGTGCAGGTGAGCAGCAGCTCCTCCACCT...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTAGGAGGTGGAGGAGCTaGTGCTCACCTGCACTAGGG +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSRRWRS*CSPALG
Trigger: CCCTAGTGCAGGTGAGCAGCAGCTCCTCCACCTCCT...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 90 bp CAGAGCACATGGAAGACAGAAGCCATGAGAATAGTTACAGCAGAGTaGGCAATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACA +
Preference number: 2 (lower is better)
Translates to: QSTWKTEAMRIVTAE*AMAENKAHTESQKT
Trigger: TGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCATTGCCAACTCTGCTGTAACTATTCTCATGGCTTCTGTCTTCCATGTGCTCTG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp ATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAACAGTACAGTTATCTTaGAATGCACACCTGTTAGGC +
Preference number: 2 (lower is better)
Translates to: MAENKAHTESQKTSMASQTVQLS*NAHLLG
Trigger: GCCTAACAGGTGTGCATTTCAAGATAACTGTACTGT...TTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATACAGTACAGTTATCTTaGAATGCACACCTGTTAGGC +
Preference number: 2 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHTVQLS*NAHLLG
Trigger: GCCTAACAGGTGTGCATTTCAAGATAACTGTACTGT...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGCAGTGGTCTTTTCCCTaGATGGAATTTGGTTTGTCA +
Preference number: 2 (lower is better)
Translates to: TQRARRQAWRAKEEAVREQWSFP*MEFGLS
Trigger: TGACAAACCAAATTCCATTCAGGGAAAAGACCACTG...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGTCCCTGAATGGAATTTaGTTTGTCAGCAAGGACTAC +
Preference number: 2 (lower is better)
Translates to: TQRARRQAWRAKEEAVRESLNGI*FVSKDY
Trigger: GTAGTCCTTGCTGACAAACCAAATTCCATTCAGGGA...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp ATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAATGTGTTTTTCCAGTTaGAGACTGTTTGGGAAACAG +
Preference number: 2 (lower is better)
Translates to: MAENKAHTESQKTSMASQMCFSS*RLFGKQ
Trigger: CTGTTTCCCAAACAGTCTTCAACTGGAAAAACACAT...TTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGAGGCCTCATATGGAAATaGGGTAAACTTTGTGGCAAA +
Preference number: 2 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRGLIWK*GKLCGK
Trigger: TTTGCCACAAAGTTTACCTCATTTCCATATGAGGCC...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGGAGAAAGGACATTTCTaGGCTAGAGGGATTAATAAG +
Preference number: 2 (lower is better)
Translates to: TQRARRQAWRAKEEAVREEKGHF*ARGINK
Trigger: CTTATTAATCCCTCTAGCTCAGAAATGTCCTTTCTC...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATTTGCAAAGAACCACATaGCTTTCAGCTAAAGGACAT +
Preference number: 2 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHLQRTT*LSAKGH
Trigger: ATGTCCTTTAGCTGAAAGTCATGTGGTTCTTTGCAA...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGAGGAGGTGGAGGAGCTaGTGCTCACCTGCACTAGGG +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKERRWRS*CSPALG
Trigger: CCCTAGTGCAGGTGAGCAGCAGCTCCTCCACCTCCT...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGCAGTGTGCTGCCATTTaGTACCTACTAATAGTAACA +
Preference number: 2 (lower is better)
Translates to: TQRARRQAWRAKEEAVREQCAAI*YLLIVT
Trigger: TGTTACTATTAGTAGGTACCAAATGGCAGCACACTG...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGGGTCTTTTCCCTGAATaGAATTTGGTTTGTCAGCAA +
Preference number: 2 (lower is better)
Translates to: TQRARRQAWRAKEEAVREGLFPE*NLVCQQ
Trigger: TTGCTGACAAACCAAATTCCATTCAGGGAAAAGACC...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATAATATGAGGCCAGATTaGGCTACAGGAAAATTTGTC +
Preference number: 2 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHNMRPD*ATGKFV
Trigger: GACAAATTTTCCTGTAGCCCAATCTGGCCTCATATT...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGCATCCTCAGCTATATTaGAAATATGAGGCCAGATTG +
Preference number: 2 (lower is better)
Translates to: TQRARRQAWRAKEEAVREHPQLY*KYEARL
Trigger: CAATCTGGCCTCATATTTCCAATATAGCTGAGGATG...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGACAGTTATCTTGAAATaGACACCTGTTAGGCAATCA +
Preference number: 2 (lower is better)
Translates to: TQRARRQAWRAKEEAVRETVILK*TPVRQS
Trigger: TGATTGCCTAACAGGTGTGCATTTCAAGATAACTGT...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGCTACCAGAAGTTGTTTaGAAAGAACCACATGACTTT +
Preference number: 2 (lower is better)
Translates to: TQRARRQAWRAKEEAVRELPEVV*KEPHDF
Trigger: AAAGTCATGTGGTTCTTTGCAAACAACTTCTGGTAG...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTTCAGAGGGAGAGGATTaGTGTCCAGACCTGTTCTGC +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSSEGED*CPDLFC
Trigger: GCAGAACAGGTCTGGACAGCAATCCTCTCCCTCTGA...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACGAGCTGCTGCTCACCTaGACTAGGGGAGCACATATT +
Preference number: 2 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYELLLT*TRGAHI
Trigger: AATATGTGCTCCCCTAGTGCAGGTGAGCAGCAGCTC...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAAGGTGGAGGAGCTGCTaGTCACCTGCACTAGGGGAG +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQRWRSC*SPALGE
Trigger: CTCCCCTAGTGCAGGTGAGCAGCAGCTCCTCCACCT...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp ATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAACAGTTGAAGACTGTTTaGGAAACAGTACAGTTATCT +
Preference number: 2 (lower is better)
Translates to: MAENKAHTESQKTSMASQQLKTV*ETVQLS
Trigger: AGATAACTGTACTGTTTCCCAAACAGTCTTCAACTG...TTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATCTTAGTAATACCATCTaGTATTCCAGAAGGGAAGAT +
Preference number: 2 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHLSNTI*YSRRED
Trigger: ATCTTCCCTTCTGGAATACCAGATGGTATTACTAAG...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTCAGGTGTCAGAATGGTaGCAAGAGACGCTGGGAAAA +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSQVSEW*QETLGK
Trigger: TTTTCCCAGCGTCTCTTGGCACCATTCTGACACCTG...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAACTCCTCCTCCTCCTCTaGCAGTCAGAGATCTGCCTC +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQLLLLL*QSEICL
Trigger: GAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGGAG...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 90 bp AACCAAAATGTGGCATATGAAGCTCTGTGCTTGGAGATGCTCACTTaGCTCGTAGAGAGACCAACAGATGACAGTGTTGAAGTGGTATCA +
Preference number: 2 (lower is better)
Translates to: NQNVAYEALCLEMLT*LVERPTDDSVEVVS
Trigger: TGATACCACTTCAACACTGTCATCTGTTGGTCTCTCTACGAGCAAAGTGAGCATCTCCAAGCACAGAGCTTCATATGCCACATTTTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTGATCACAGAGAGACTTaGGACCAGAAATGGGTTCCT +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSDHRET*DQKWVP
Trigger: AGGAACCCATTTCTGGTCTCAAGTCTCTCTGTGATC...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACGACCTGTTCTGCAAGTaGAGAGTGCTTCTCCAATCT +
Preference number: 2 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYDLFCK*RVLLQS
Trigger: AGATTGGAGAAGCACTCTGCACTTGCAGAACAGGTC...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATCTCCTCCTCCTCCTCTaGCAGTCAGAGATCTGCCTC +
Preference number: 2 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDLLLLL*QSEICL
Trigger: GAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGGAG...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACATGAAGCTCTGTGCTTaGAGATGCTCACTTTGCTCG +
Preference number: 2 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYMKLCA*RCSLCS
Trigger: CGAGCAAAGTGAGCATCTCCAAGCACAGAGCTTCAT...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACCATGTCTCGGAGGTTTaGCTGATGAACTTTGAGAAC +
Preference number: 2 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYHVSEV*LMNFEN
Trigger: GTTCTCAAAGTTCATCAGTCAAACCTCCGAGACATG...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACGGCGAGGTTAAAGGATaGAATGCTTCAGCCATTCTT +
Preference number: 2 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYGEVKG*NASAIL
Trigger: AAGAATGGCTGAAGCATTTCATCCTTTAACCTCGCC...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTGTGCACACAAGTTGCTaGAAATGGAGTTTGCTGAGA +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSVHTSC*KWSLLR
Trigger: TCTCAGCAAACTCCATTTTCAGCAACTTGTGTGCAC...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGTGTCCAGACCTGTTCTaGAAGTGCAGAGTGCTTCTC +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKECPDLF*KCRVLL
Trigger: GAGAAGCACTCTGCACTTGCAGAACAGGTCTGGACA...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCGAGCTGCTGCTCACCTaGACTAGGGGAGCACATATT +
Preference number: 2 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIELLLT*TRGAHI
Trigger: AATATGTGCTCCCCTAGTGCAGGTGAGCAGCAGCTC...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAACAACAGGTGTCAGAATaGTGCCAAGAGACGCTGGGA +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQQQVSE*CQETLG
Trigger: TCCCAGCGTCTCTTGGCACCATTCTGACACCTGTTG...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTATCGGAAATGGTCCTaGAAATCCCCATCTCCTGAA +
Preference number: 2 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYYRKWS*KSPSPE
Trigger: TTCAGGAGATGGGGATTTCCAGGACCATTTCCGATA...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 90 bp CAAGTGCAGAGTGCTTCTCCAATCTTCCCTCATGTTTATGCAGCTTaGGTGGCAATAATCAACTCAAAAGTCCCACAGACTGGAAAATTA +
Preference number: 2 (lower is better)
Translates to: QVQSASPIFPHVYAA*VAIINSKVPQTGKL
Trigger: TAATTTTCCAGTCTGTGGGACTTTTGAGTTGATTATTGCCACCAAAGCTGCATAAACATGAGGGAAGATTGGAGAAGCACTCTGCACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACCTGAAATATTTCTGCTaGCAAGGAAGCCATAGAGGT +
Preference number: 2 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYLKYFC*QGSHRG
Trigger: ACCTCTATGGCTTCCTTGTCAGCAGAAATATTTCAG...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTCTGAAATATTTCTGCTaGCAAGGAAGCCATAGAGGT +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSLKYFC*QGSHRG
Trigger: ACCTCTATGGCTTCCTTGTCAGCAGAAATATTTCAG...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTCAGTGGTCTTTTCCCTaGATGGAATTTGGTTTGTCA +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSQWSFP*MEFGLS
Trigger: TGACAAACCAAATTCCATTCAGGGAAAAGACCACTG...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGGATCACAGAGAGACTTaGGACCAGAAATGGGTTCCT +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEDHRET*DQKWVP
Trigger: AGGAACCCATTTCTGGTCTCAAGTCTCTCTGTGATC...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCAAGGGAGAGGAGTTaGAAGCATTCTGACCATAAA +
Preference number: 2 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYSRERS*KHSDHK
Trigger: TTTATGGTCAGAATGCTTTCAACTCCTCTCCCTTGA...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAGAAATCCCCATCTCCTaGAAGAAGAAGCCCAGACTG +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQEIPIS*KKKPRL
Trigger: CAGTCTGGGCTTCTTCTTTCAGGAGATGGGGATTTC...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACAAGATGTCTACAGTGTaGTGCCATTTGGTACCTACT +
Preference number: 2 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYKMSTV*CHLVPT
Trigger: AGTAGGTACCAAATGGCAGCACACTGTAGACATCTT...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGTCTGCAAGTGCAGAGTaGTTCTCCAATCTTCCCTCA +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKESASAE*FSNLPS
Trigger: TGAGGGAAGATTGGAGAAGCACTCTGCACTTGCAGA...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGTGCCATCCAGGCATTTaGGAAACAAAGGCAGGAACA +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKECHPGI*ETKAGT
Trigger: TGTTCCTGCCTTTGTTTCCCAAATGCCTGGATGGCA...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTTGTTGTACAGAAGGATaGATTCAAGGACCAGTCTGT +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSCCTEG*IQGPVC
Trigger: ACAGACTGGTCCTTGAATCCATCCTTCTGTACAACA...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTTTGCAAAGAACCACATaGCTTTCAGCTAAAGGACAT +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSLQRTT*LSAKGH
Trigger: ATGTCCTTTAGCTGAAAGTCATGTGGTTCTTTGCAA...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGGCTATATTGGAAATATaGGGCCAGATTGGGCTACAG +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEAILEI*GQIGLQ
Trigger: CTGTAGCCCAATCTGGCCTCATATTTCCAATATAGC...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAGTCCTAACTAGACTGTaGGGACCCACAGCTTCTATT +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQVLTRL*GPTASI
Trigger: AATAGAAGCTGTGGGTCCTCACAGTCTAGTTAGGAC...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATTGCATCCGATTCCTCTaGCTCAGATTCCAACAGCAG +
Preference number: 2 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDCIRFL*LRFQQQ
Trigger: CTGCTGTTGGAATCTGAGTCAGAGGAATCGGATGCA...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGCCAAAATGTGGCATATaGAGCTCTGTGCTTGGAGAT +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEPKCGI*SSVLGD
Trigger: ATCTCCAAGCACAGAGCTTCATATGCCACATTTTGG...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAGCTGCCAGCAGAAAATaGAAAGTAGTGTGGCACACA +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQAASRK*KVVWHT
Trigger: TGTGTGCCACACTACTTTTCATTTTCTGCTGGCAGC...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTTTATTGTTGGCTTTGTaGAGGCCTCATATGGAAATG +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSLLLAL*RPHMEM
Trigger: CATTTCCATATGAGGCCTGCACAAAGCCAACAATAA...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAATTCATACCACTGGAGTaGCTCCCCAGAAGACAGATA +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQFIPLE*LPRRQI
Trigger: TATCTGTCTTCTGGGGAGGCACTCCAGTGGTATGAA...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACGCCATAGAGGTTGTGTaGCAACAGTGTAAAATCAAA +
Preference number: 2 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYAIEVV*QQCKIK
Trigger: TTTGATTTTACACTGTTGCCACACAACCTCTATGGC...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAACCATTCTTTCAAGGATaGTTACCCCAAGACAGCCCA +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQPFFQG*LPQDSP
Trigger: TGGGCTGTCTTGGGGTAACCATCCTTGAAAGAATGG...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 90 bp ATATGTTTCCATTATAGTAGTTTCATGGTTTTCCTATTGAAGTTCTaGGGATTGAACTGGGGCCTTGTGTACATGCTAAGCAAGTGTCCC +
Preference number: 2 (lower is better)
Translates to: ICFHYSSFMVFLLKF*GLNWGLVYMLSKCP
Trigger: GGGACACTTGCTTAGCATGTACACAAGGCCCCAGTTCAATCCCAAGAACTTCAATAGGAAAACCATGAAACTACTATAATGGAAACATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAACTTAATCTAGATGTTTaGGCTTCTGTGGCTCAGTGG +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQLNLDV*ASVAQW
Trigger: CCACTGAGCCACAGAAGCTCAAACATCTAGATTAAG...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTGGAAGTGTCTTAAACTaGAGCAGTTTAAAGAGAAAC +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSGSVLN*SSLKRN
Trigger: GTTTCTCTTTAAACTGCTTCAGTTTAAGACACTTCC...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGACAGAAACCAGAAGCTaGACAAAGAAATCAGCACTG +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKETETRS*TKKSAL
Trigger: CAGTGCTGATTTCTTTGTTCAGCTTCTGGTTTCTGT...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTAACTTTGAGAACATCTaGAAAAATATGCCCGTGTCA +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSNFENI*KNMPVS
Trigger: TGACACGGGCATATTTTTTCAGATGTTCTCAAAGTT...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACATGTATAAAGCTGAGTaGAGAGAACATGACATCATC +
Preference number: 2 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYMYKAE*REHDII
Trigger: GATGATGTCATGTTCTCTTCACTCAGCTTTATACAT...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGAAGAACTCTGCAACATaGTACTTGATTGCTGTGCTC +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEKNSAT*YLIAVL
Trigger: GAGCACAGCAATCAAGTATCATGTTGCAGAGTTCTT...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTTTATTTTATGGAAAGTaGAGAGACGAAGAACAAGGC +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSLFYGK*RDEEQG
Trigger: GCCTTGTTCTTCGTCTCTTCACTTTCCATAAAATAA...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTTATTCTGGAAGGACTTaGTTTAATGGAAGAGGACTA +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSYSGRT*FNGRGL
Trigger: TAGTCCTCTTCCATTAAATCAAGTCCTTCCAGAATA...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTGCAAATTTGTCTGACTaGTTCAAAATTTGTGGCACA +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSANLSD*FKICGT
Trigger: TGTGCCACAAATTTTGAAGCAGTCAGACAAATTTGC...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCATGTTTGAGCTTCTGTaGCTCAGTGGTCTTTTCCCT +
Preference number: 2 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIMFELL*LSGLFP
Trigger: AGGGAAAAGACCACTGAGCCACAGAAGCTCAAACAT...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAATACATATGCACCCCTTaGAGGATGACTACAATCCAG +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQYICTP*RMTTIQ
Trigger: CTGGATTGTAGTCATCCTCCAAGGGGTGCATATGTA...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATATGAAGCTCTGTGCTTaGAGATGCTCACTTTGCTCG +
Preference number: 2 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDMKLCA*RCSLCS
Trigger: CGAGCAAAGTGAGCATCTCCAAGCACAGAGCTTCAT...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAAACAATCAGGCTAAGTaGCTGAACACTCCTCCACAA +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQNNQAK*LNTPPQ
Trigger: TTGTGGAGGAGTGTTCAGCCACTTAGCCTGATTGTT...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATCTTAATCTAGATGTTTaGGCTTCTGTGGCTCAGTGG +
Preference number: 2 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDLNLDV*ASVAQW
Trigger: CCACTGAGCCACAGAAGCTCAAACATCTAGATTAAG...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAATCAAGGGAGAGGAGTTaGAAGCATTCTGACCATAAA +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQSRERS*KHSDHK
Trigger: TTTATGGTCAGAATGCTTTCAACTCCTCTCCCTTGA...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATTGGGTCTTCCTAAACTaGATGGCGAGGTTAAAGGAT +
Preference number: 2 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDWVFLN*MARLKD
Trigger: ATCCTTTAACCTCGCCATTCAGTTTAGGAAGACCCA...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCAAGAACTCTGCAACATaGTACTTGATTGCTGTGCTC +
Preference number: 2 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIKNSAT*YLIAVL
Trigger: GAGCACAGCAATCAAGTATCATGTTGCAGAGTTCTT...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGGAAAATGGAGTTTGCTaGGAGCCAAACAAAAGAACT +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEENGVC*EPNKRT
Trigger: AGTTCTTTTGTTTGGCTCTCAGCAAACTCCATTTTC...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAACTGTCTTTGCAGAAATaGGCTCTTGGACATCTTTTG +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQLSLQK*ALGHLL
Trigger: CAAAAGATGTCCAAGAGCTCATTTCTGCAAAGACAG...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGTTATTGTTGGCTTTGTaGAGGCCTCATATGGAAATG +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKELLLAL*RPHMEM
Trigger: CATTTCCATATGAGGCCTGCACAAAGCCAACAATAA...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCAAGATGTCTACAGTGTaGTGCCATTTGGTACCTACT +
Preference number: 2 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIKMSTV*CHLVPT
Trigger: AGTAGGTACCAAATGGCAGCACACTGTAGACATCTT...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACAAAAATTCCAGTGTCTaGCACAGAATCTTTCCTATA +
Preference number: 2 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYKNSSV*HRIFPI
Trigger: TATAGGAAAGATTCTGTGGCAGACACTGGAATTTTT...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAATCCCTGAATGGAATTTaGTTTGTCAGCAAGGACTAC +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQSLNGI*FVSKDY
Trigger: GTAGTCCTTGCTGACAAACCAAATTCCATTCAGGGA...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGAATATGAGGCCAGATTaGGCTACAGGAAAATTTGTC +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKENMRPD*ATGKFV
Trigger: GACAAATTTTCCTGTAGCCCAATCTGGCCTCATATT...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAACTTCCTCAAGGAGTGTaGTCTCAAATTAATCCACGT +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQLPQGV*SQINPR
Trigger: ACGTGGATTAATTTGAGACCACACTCCTTGAGGAAG...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTTTATTAACCAAAATGTaGCATATGAAGCTCTGTGCT +
Preference number: 2 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSLLTKM*HMKLCA
Trigger: AGCACAGAGCTTCATATGCCACATTTTGGTTAATAA...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCATGTGTTTTTCCAGTTaGAGACTGTTTGGGAAACAG +
Preference number: 2 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIMCFSS*RLFGKQ
Trigger: CTGTTTCCCAAACAGTCTTCAACTGGAAAAACACAT...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGGGAAGTGTCTTAAACTaGAGCAGTTTAAAGAGAAAC +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEGSVLN*SSLKRN
Trigger: GTTTCTCTTTAAACTGCTTCAGTTTAAGACACTTCC...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCCCAAAGAAGAAGCGGTaGGAGAGAAAAGATTTCTTT +
Preference number: 2 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIPKKKR*ERKDFF
Trigger: AAAGAAATCTTTTCTCTCTCACCGCTTCTTCTTTGG...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAATGTCTACAGTGTGCTaGCATTTGGTACCTACTAAT +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQMSTVC*HLVPTN
Trigger: ATTAGTAGGTACCAAATGGCAGCACACTGTAGACAT...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGGCAAATTTGTCTGACTaGTTCAAAATTTGTGGCACA +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEANLSD*FKICGT
Trigger: TGTGCCACAAATTTTGAAGCAGTCAGACAAATTTGC...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCCAGTGTGCTGCCATTTaGTACCTACTAATAGTAACA +
Preference number: 2 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIQCAAI*YLLIVT
Trigger: TGTTACTATTAGTAGGTACCAAATGGCAGCACACTG...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCGCCATAGAGGTTGTGTaGCAACAGTGTAAAATCAAA +
Preference number: 2 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIAIEVV*QQCKIK
Trigger: TTTGATTTTACACTGTTGCCACACAACCTCTATGGC...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCCATCCTCAGCTATATTaGAAATATGAGGCCAGATTG +
Preference number: 2 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIHPQLY*KYEARL
Trigger: CAATCTGGCCTCATATTTCCAATATAGCTGAGGATG...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 90 bp AGGACTCAAAGCCATCCTCAGCTATATTGGAAATATGAGGCCAGATaGGGCTACAGGAAAATTTGTCTTAATCCTCCATATAATAAAATA +
Preference number: 2 (lower is better)
Translates to: RTQSHPQLYWKYEAR*GYRKICLNPPYNKI
Trigger: TATTTTATTATATGGAGGATTAAGACAAATTTTCCTGTAGCCCAATCTGGCCTCATATTTCCAATATAGCTGAGGATGGCTTTGAGTCCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 90 bp TTCAAGGAACAGTACTACACCATCCTTCGCTTAGAGACAAACAAATaGAGAAATGTTGCTAAGATGTTTGCTCACCTTTTATACACAGAT +
Preference number: 2 (lower is better)
Translates to: FKEQYYTILRLETNK*RNVAKMFAHLLYTD
Trigger: ATCTGTGTATAAAAGGTGAGCAAACATCTTAGCAACATTTCTCAATTTGTTTGTCTCTAAGCGAAGGATGGTGTAGTACTGTTCCTTGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 90 bp CTTGATTTAATGGAAGAGGACTATCAGTTTATACATATGCACCCCTaGGAGGATGACTACAATCCAGAACATGTTCTTAATGTTTTCAAG +
Preference number: 2 (lower is better)
Translates to: LDLMEEDYQFIHMHP*EDDYNPEHVLNVFK
Trigger: CTTGAAAACATTAAGAACATGTTCTGGATTGTAGTCATCCTCCAAGGGGTGCATATGTATAAACTGATAGTCCTCTTCCATTAAATCAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCAAGGACATGATTAGCTaGCTACTGAAATATTTCTGC +
Preference number: 2 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIKDMIS*LLKYFC
Trigger: GCAGAAATATTTCAGTAGTCAGCTAATCATGTCCTT...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAATGTATAAAGCTGAGTaGAGAGAACATGACATCATC +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQMYKAE*REHDII
Trigger: GATGATGTCATGTTCTCTTCACTCAGCTTTATACAT...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAATTTAGCTTCACTGAATaGGGAAGGTACCTTCTTTTT +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQFSFTE*GRYLLF
Trigger: AAAAAGAAGGTACCTTCCTCATTCAGTGAAGCTAAA...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCACAGTTATCTTGAAATaGACACCTGTTAGGCAATCA +
Preference number: 2 (lower is better)
Translates to: VGIEKNTEKEISEMVLEITVILK*TPVRQS
Trigger: TGATTGCCTAACAGGTGTGCATTTCAAGATAACTGT...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCCTACCAGAAGTTGTTTaGAAAGAACCACATGACTTT +
Preference number: 2 (lower is better)
Translates to: VGIEKNTEKEISEMVLEILPEVV*KEPHDF
Trigger: AAAGTCATGTGGTTCTTTGCAAACAACTTCTGGTAG...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR GCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCAACATGATACTTGATTaGTGTGCTCAACAAAAGACC +
Preference number: 2 (lower is better)
Translates to: VGIEKNTEKEISEMVLEINMILD*CAQQKT
Trigger: GGTCTTTTGTTGAGCACAGCAATCAAGTATCATGTT...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGTGGATCCTTATTTTATaGAAAGTGAAGAGACGAAGA +
Preference number: 2 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEWILIL*KVKRRR
Trigger: TCTTCGTCTCTTCACTTTCCATAAAATAAGGATCCA...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAATATTTCCTTTGGGACTaGCTATATAACACCACCATT +
Preference number: 2 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQYFLWD*LYNTTI
Trigger: AATGGTGGTGTTATATAGCCAGTCCCAAAGGAAATA...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATAAGGACATGATTAGCTaGCTACTGAAATATTTCTGC +
Preference number: 2 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDKDMIS*LLKYFC
Trigger: GCAGAAATATTTCAGTAGTCAGCTAATCATGTCCTT...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR TCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATAACTTTGAGAACATCTaGAAAAATATGCCCGTGTCA +
Preference number: 2 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDNFENI*KNMPVS
Trigger: TGACACGGGCATATTTTTTCAGATGTTCTCAAAGTT...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATCAGTTGAAGACTGTTTaGGAAACAGTACAGTTATCT +
Preference number: 2 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDQLKTV*ETVQLS
Trigger: AGATAACTGTACTGTTTCCCAAACAGTCTTCAACTG...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCAATCAATGCAATCTTTaGACTCCTGTGAAACATTCT +
Preference number: 2 (lower is better)
Translates to: VGIEKNTEKEISEMVLEINQCNL*TPVKHS
Trigger: AGAATGTTTCACAGGAGTCCAAAGATTGCATTGATT...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATAAAAGTCCCACAGACTaGAAAATTAATCCTCAAGAG +
Preference number: 2 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDKSPTD*KINPQE
Trigger: CTCTTGAGGATTAATTTTCCAGTCTGTGGGACTTTT...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR GCA 72 bp GAGGAGGAGGAGGAGGTGGAGGAGCTGCTGCTCACCTaGACTAGGGGAGCACATATTCCTCCCTCAAAGCTC +
Preference number: 3 (lower is better)
Translates to: EEEEEVEELLLT*TRGAHIPPSKL
Trigger: GAGCTTTGAGGGAGGAATATGTGCTCCCCTAGTGCAGGTGAGCAGCAGCTCCTCCACCTCCTCCTCCTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CCA 72 bp CTAGGTGTGGTGGGGCACATCTGCCATCCAGGCATTTaGGAAACAAAGGCAGGAACAGCAGGACTCAAAGCC +
Preference number: 3 (lower is better)
Translates to: LGVVGHICHPGI*ETKAGTAGLKA
Trigger: GGCTTTGAGTCCTGCTGTTCCTGCCTTTGTTTCCCAAATGCCTGGATGGCAGATGTGCCCCACCACACCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR GCA 72 bp TCAAACAAACGGAACCTAGGTGTGGTGGGGCACATCTaGCATCCAGGCATTTGGGAAACAAAGGCAGGAACA +
Preference number: 3 (lower is better)
Translates to: SNKRNLGVVGHI*HPGIWETKAGT
Trigger: TGTTCCTGCCTTTGTTTCCCAAATGCCTGGATGGCAGATGTGCCCCACCACACCTAGGTTCCGTTTGTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CCA 72 bp GATGACAACAGGTGTCAGAATGGTGCCAAGAGACGCTaGGAAAAGCCTAGCAGATGCCCTGAACATTCTAGA +
Preference number: 3 (lower is better)
Translates to: DDNRCQNGAKRR*EKPSRCPEHSR
Trigger: TCTAGAATGTTCAGGGCATCTGCTAGGCTTTTCCCAGCGTCTCTTGGCACCATTCTGACACCTGTTGTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGACAGTGTGCTGCCATTaGGTACCTACTAATAGTAAC +
Preference number: 3 (lower is better)
Translates to: TQRARRQAWRAKEEAVRETVCCH*VPTNSN
Trigger: GTTACTATTAGTAGGTACCAAATGGCAGCACACTGT...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp ATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAAGGACTACCAGAAGTaGTTTGCAAAGAACCACATG +
Preference number: 3 (lower is better)
Translates to: MAENKAHTESQKTSMASQKDYQK*FAKNHM
Trigger: CATGTGGTTCTTTGCAAACAACTTCTGGTAGTCCTT...TTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATTTCCCTGAATGGAATTaGGTTTGTCAGCAAGGACTA +
Preference number: 3 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHFPEWN*VCQQGL
Trigger: TAGTCCTTGCTGACAAACCAAATTCCATTCAGGGAA...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATACAGGAGACATTTCTTaGTGTTTTGAAGGCCAGCTT +
Preference number: 3 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHTGDIS*CFEGQL
Trigger: AAGCTGGCCTTCAAAACACAAAGAAATGTCTCCTGT...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 72 bp AGCCATGAGAATAGTTACAGCAGAGTTGGCAATGGCTaGGAACAAGGCTCACACAGAGAGCCAGAAGACAAG +
Preference number: 3 (lower is better)
Translates to: SHENSYSRVGNG*EQGSHREPEDK
Trigger: CTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCATTGCCAACTCTGCTGTAACTATTCTCATGGCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 72 bp CAAGGAACTCAGACCATTGCATACGTGTCACTTGAATaGACCCAAGGCATCTGGTTTATTGGGTCAGCTGCC +
Preference number: 3 (lower is better)
Translates to: QGTQTIAYVSLE*TQGIWFIGSAA
Trigger: GGCAGCTGACCCAATAAACCAGATGCCTTGGGTTCATTCAAGTGACACGTATGCAATGGTCTGAGTTCCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp ATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAACAGTACAGTTATCTaGAAATGCACACCTGTTAGG +
Preference number: 3 (lower is better)
Translates to: MAENKAHTESQKTSMASQNSTVI*KCTPVR
Trigger: CCTAACAGGTGTGCATTTCAAGATAACTGTACTGTT...TTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGTGTAGCCACTATATCTaGTCATTCCTTCACAGCATA +
Preference number: 3 (lower is better)
Translates to: TQRARRQAWRAKEEAVRECSHYI*SFLHSI
Trigger: TATGCTGTGAAGGAATGACAAGATATAGTGGCTACA...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp ATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAATTTTTGACATTATTGTaGGCTTTGTGCAGGCCTCAT +
Preference number: 3 (lower is better)
Translates to: MAENKAHTESQKTSMASQFLTLL*ALCRPH
Trigger: ATGAGGCCTGCACAAAGCCAACAATAATGTCAAAAA...TTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGAACATTTCTTTGTGTTTaGAAGGCCAGCTTTCCTCAG +
Preference number: 3 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRTFLCV*KASFPQ
Trigger: CTGAGGAAAGCTGGCCTTCAAAACACAAAGAAATGT...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTGTCAGAGGGAGAGGATaGCTGTCCAGACCTGTTCTG +
Preference number: 3 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSVRGRG*LSRPVL
Trigger: CAGAACAGGTCTGGACAGCAATCCTCTCCCTCTGAC...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGAAACAGTACAGTTATCTaGAAATGCACACCTGTTAGG +
Preference number: 3 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRNSTVI*KCTPVR
Trigger: CCTAACAGGTGTGCATTTCAAGATAACTGTACTGTT...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 72 bp CTGTCAAGGAACTCAGACCATTGCATACGTGTCACTTaGATGAACCCAAGGCATCTGGTTTATTGGGTCAGC +
Preference number: 3 (lower is better)
Translates to: LSRNSDHCIRVT*MNPRHLVYWVS
Trigger: GCTGACCCAATAAACCAGATGCCTTGGGTTCATTCAAGTGACACGTATGCAATGGTCTGAGTTCCTTGACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR GCA 72 bp AGGATTGCTGTCCAGACCTGTTCTGCAAGTGCAGAGTaGTTCTCCAATCTTCCCTCATGTTTATGCAGCTTT +
Preference number: 3 (lower is better)
Translates to: RIAVQTCSASAE*FSNLPSCLCSF
Trigger: AAAGCTGCATAAACATGAGGGAAGATTGGAGAAGCACTCTGCACTTGCAGAACAGGTCTGGACAGCAATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CCA 72 bp GTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTaGCAAAGGGCATGGCAGAGTGCTGTCTGTCAAGGT +
Preference number: 3 (lower is better)
Translates to: VGYFIRALQSIA*QRAWQSAVCQG
Trigger: ACCTTGACAGACAGCACTCTGCCATGCCCTTTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTAGATCACAGAGAGACTaGAGACCAGAAATGGGTTCC +
Preference number: 3 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSRSQRD*RPEMGS
Trigger: GGAACCCATTTCTGGTCTCAAGTCTCTCTGTGATCT...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 72 bp CCATTCTTTCAAGGATGGTTACCCCAAGACAGCCCATaGAATACCCGGTTTGTCATCAATTTCTTCACTTCC +
Preference number: 3 (lower is better)
Translates to: PFFQGWLPQDSP*NTRFVINFFTS
Trigger: GGAAGTGAAGAAATTGATGACAAACCGGGTATTTCATGGGCTGTCTTGGGGTAACCATCCTTGAAAGAATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CCA 72 bp AGGAACAGCAGGACTCAAAGCCATCCTCAGCTATATTaGAAATATGAGGCCAGATTGGGCTACAGGAAAATT +
Preference number: 3 (lower is better)
Translates to: RNSRTQSHPQLY*KYEARLGYRKI
Trigger: AATTTTCCTGTAGCCCAATCTGGCCTCATATTTCCAATATAGCTGAGGATGGCTTTGAGTCCTGCTGTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CCA 72 bp TTCATGGTTTTCCTATTGAAGTTCTTGGGATTGAACTaGGGCCTTGTGTACATGCTAAGCAAGTGTCCCAGT +
Preference number: 3 (lower is better)
Translates to: FMVFLLKFLGLN*GLVYMLSKCPS
Trigger: ACTGGGACACTTGCTTAGCATGTACACAAGGCCCCAGTTCAATCCCAAGAACTTCAATAGGAAAACCATGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CCA 72 bp ATTAGAGCATTACAAAGCATAGCTTGGCAAAGGGCATaGCAGAGTGCTGTCTGTCAAGGTAAACACAACTTC +
Preference number: 3 (lower is better)
Translates to: IRALQSIAWQRA*QSAVCQGKHNF
Trigger: GAAGTTGTGTTTACCTTGACAGACAGCACTCTGCCATGCCCTTTGCCAAGCTATGCTTTGTAATGCTCTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACATAGTTACAGCAGAGTaGGCAATGGCTGAGAACAAG +
Preference number: 3 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYIVTAE*AMAENK
Trigger: CTTGTTCTCAGCCATTGCCAACTCTGCTGTAACTAT...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACCAACAGATGACAGTGTaGAAGTGGTATCAGCTTCCT +
Preference number: 3 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYQQMTV*KWYQLP
Trigger: AGGAAGCTGATACCACTTCAACACTGTCATCTGTTG...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACACAGGAGACATTTCTTaGTGTTTTGAAGGCCAGCTT +
Preference number: 3 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYTGDIS*CFEGQL
Trigger: AAGCTGGCCTTCAAAACACAAAGAAATGTCTCCTGT...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACGAATGTGCACACAAGTaGCTGAAAATGGAGTTTGCT +
Preference number: 3 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYECAHK*LKMEFA
Trigger: AGCAAACTCCATTTTCAGCAACTTGTGTGCACATTC...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 72 bp TCACAAAGGGGAATCAATGCAATCTTTGGACTCCTGTaGAACATTCTACAGCAGTCTGAGATTGACAGAAGA +
Preference number: 3 (lower is better)
Translates to: SQRGINAIFGLL*NILQQSEIDRR
Trigger: TCTTCTGTCAATCTCAGACTGCTGTAGAATGTTTCACAGGAGTCCAAAGATTGCATTGATTCCCCTTTGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAAGATCACAGAGAGACTaGAGACCAGAAATGGGTTCC +
Preference number: 3 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQRSQRD*RPEMGS
Trigger: GGAACCCATTTCTGGTCTCAAGTCTCTCTGTGATCT...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTGAATCAATGCAATCTTaGGACTCCTGTGAAACATTC +
Preference number: 3 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSESMQS*DSCETF
Trigger: GAATGTTTCACAGGAGTCCAAAGATTGCATTGATTC...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCTATGAAGCTCTGTGCTaGGAGATGCTCACTTTGCTC +
Preference number: 3 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIYEALC*EMLTLL
Trigger: GAGCAAAGTGAGCATCTCCAAGCACAGAGCTTCATA...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAATTGAAGTTCTTGGGATaGAACTGGGGCCTTGTGTAC +
Preference number: 3 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQLKFLG*NWGLVY
Trigger: GTACACAAGGCCCCAGTTCAATCCCAAGAACTTCAA...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGACATTATTGTTGGCTTaGTGCAGGCCTCATATGGAA +
Preference number: 3 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKETLLLA*CRPHME
Trigger: TTCCATATGAGGCCTGCACAAAGCCAACAATAATGT...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAATACATATGCACCCCTaGGAGGATGACTACAATCCA +
Preference number: 3 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQIHMHP*EDDYNP
Trigger: TGGATTGTAGTCATCCTCCAAGGGGTGCATATGTAT...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATTTGGAGATGCTCACTTaGCTCGTAGAGAGACCAACA +
Preference number: 3 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDLEMLT*LVERPT
Trigger: TGTTGGTCTCTCTACGAGCAAAGTGAGCATCTCCAA...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 72 bp ATATGCCCGTGTCATTGTAGTACAGAAACCAGAAGCTaGACAAAGAAATCAGCACTGACATCTTCATCTTCA +
Preference number: 3 (lower is better)
Translates to: ICPCHCSTETRS*TKKSALTSSSS
Trigger: TGAAGATGAAGATGTCAGTGCTGATTTCTTTGTTCAGCTTCTGGTTTCTGTACTACAATGACACGGGCATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR GCA 72 bp AATTTGGTTTGTCAGCAAGGACTACCAGAAGTTGTTTaGAAAGAACCACATGACTTTCAGCTAAAGGACATG +
Preference number: 3 (lower is better)
Translates to: NLVCQQGLPEVV*KEPHDFQLKDM
Trigger: CATGTCCTTTAGCTGAAAGTCATGTGGTTCTTTGCAAACAACTTCTGGTAGTCCTTGCTGACAAACCAAATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR GCA 72 bp TCTCAAATTAATCCACGTGTCACAAAGGGGAATCAATaGAATCTTTGGACTCCTGTGAAACATTCTACAGCA +
Preference number: 3 (lower is better)
Translates to: SQINPRVTKGNQ*NLWTPVKHSTA
Trigger: TGCTGTAGAATGTTTCACAGGAGTCCAAAGATTGCATTGATTCCCCTTTGTGACACGTGGATTAATTTGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CCA 72 bp GCCATCCTCAGCTATATTGGAAATATGAGGCCAGATTaGGCTACAGGAAAATTTGTCTTAATCCTCCATATA +
Preference number: 3 (lower is better)
Translates to: AILSYIGNMRPD*ATGKFVLILHI
Trigger: TATATGGAGGATTAAGACAAATTTTCCTGTAGCCCAATCTGGCCTCATATTTCCAATATAGCTGAGGATGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CCA 72 bp TGGAAGAGGACTATCAGTTTATACATATGCACCCCTTaGAGGATGACTACAATCCAGAACATGTTCTTAATG +
Preference number: 3 (lower is better)
Translates to: WKRTISLYICTP*RMTTIQNMFLM
Trigger: CATTAAGAACATGTTCTGGATTGTAGTCATCCTCCAAGGGGTGCATATGTATAAACTGATAGTCCTCTTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGTTTTTGACATTATTGTaGGCTTTGTGCAGGCCTCAT +
Preference number: 3 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEFLTLL*ALCRPH
Trigger: ATGAGGCCTGCACAAAGCCAACAATAATGTCAAAAA...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAACAGTGTGCTGCCATTaGGTACCTACTAATAGTAAC +
Preference number: 3 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQTVCCH*VPTNSN
Trigger: GTTACTATTAGTAGGTACCAAATGGCAGCACACTGT...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAAAGGACTACCAGAAGTaGTTTGCAAAGAACCACATG +
Preference number: 3 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQKDYQK*FAKNHM
Trigger: CATGTGGTTCTTTGCAAACAACTTCTGGTAGTCCTT...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCTTCCCTGAATGGAATTaGGTTTGTCAGCAAGGACTA +
Preference number: 3 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIFPEWN*VCQQGL
Trigger: TAGTCCTTGCTGACAAACCAAATTCCATTCAGGGAA...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGAAATATGAGGCCAGATaGGGCTACAGGAAAATTTGT +
Preference number: 3 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEKYEAR*GYRKIC
Trigger: ACAAATTTTCCTGTAGCCCAATCTGGCCTCATATTT...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCACATTTCTTTGTGTTTaGAAGGCCAGCTTTCCTCAG +
Preference number: 3 (lower is better)
Translates to: VGIEKNTEKEISEMVLEITFLCV*KASFPQ
Trigger: CTGAGGAAAGCTGGCCTTCAAAACACAAAGAAATGT...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATATAGTTACAGCAGAGTaGGCAATGGCTGAGAACAAG +
Preference number: 3 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDIVTAE*AMAENK
Trigger: CTTGTTCTCAGCCATTGCCAACTCTGCTGTAACTAT...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATACATTATTGTTGGCTTaGTGCAGGCCTCATATGGAA +
Preference number: 3 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDTLLLA*CRPHME
Trigger: TTCCATATGAGGCCTGCACAAAGCCAACAATAATGT...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAACATCTAGTAGGATTTTaGTCAAGATCTTCTTCCAGG +
Preference number: 3 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQHLVGF*SRSSSR
Trigger: CCTGGAAGAAGATCTTGACAAAAATCCTACTAGATG...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCCATCTAGTAGGATTTTaGTCAAGATCTTCTTCCAGG +
Preference number: 3 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIHLVGF*SRSSSR
Trigger: CCTGGAAGAAGATCTTGACAAAAATCCTACTAGATG...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGATGTTGCTAAGATGTTaGCTCACCTTTTATACACAG +
Preference number: 3 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEMLLRC*LTFYTQ
Trigger: CTGTGTATAAAAGGTGAGCAAACATCTTAGCAACAT...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 72 bp CTGAGATTGACAGAAGAGTTCATTATACGATTAAAGTaGTGTTTGTTGTACAGAAGGATGGATTCAAGGACC +
Preference number: 3 (lower is better)
Translates to: LRLTEEFIIRLK*CLLYRRMDSRT
Trigger: GGTCCTTGAATCCATCCTTCTGTACAACAAACATCACTTTAATCGTATAATGAACTCTTCTGTCAATCTCAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR GCA 72 bp CCAATAGTAACAAACATTTCTAACACGGATTACTGCTaGTGTGTAAAAGTCCTGTTGATAACTGACCTTACA +
Preference number: 3 (lower is better)
Translates to: PIVTNISNTDYC*CVKVLLITDLT
Trigger: TGTAAGGTCAGTTATCAACAGGACTTTTACACAGCAGCAGTAATCCGTGTTAGAAATGTTTGTTACTATTGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR GCA 72 bp TCTCCAATAGTAACAAACATTTCTAACACGGATTACTaGTGCTGTGTAAAAGTCCTGTTGATAACTGACCTT +
Preference number: 3 (lower is better)
Translates to: SPIVTNISNTDY*CCVKVLLITDL
Trigger: AAGGTCAGTTATCAACAGGACTTTTACACAGCAGCAGTAATCCGTGTTAGAAATGTTTGTTACTATTGGAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR-3UTR CAA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATAAATATGAGGCCAGATaGGGCTACAGGAAAATTTGT +
Preference number: 3 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDKYEAR*GYRKIC
Trigger: ACAAATTTTCCTGTAGCCCAATCTGGCCTCATATTT...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR TCA 72 bp TGGATTCAAGGACCAGTCTGTTATTCTGGAAGGACTTaGTTTAATGGAAGAGGACTATCAGTTTATACATAT +
Preference number: 3 (lower is better)
Translates to: WIQGPVCYSGRT*FNGRGLSVYTY
Trigger: ATATGTATAAACTGATAGTCCTCTTCCATTAAATCAAGTCCTTCCAGAATAACAGACTGGTCCTTGAATCCA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp ATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAACTTCCTCTCCTGGTGTaGGTGCAGACAAAGAACCAG +
Preference number: 4 (lower is better)
Translates to: MAENKAHTESQKTSMASQLPLLV*VQTKNQ
Trigger: CTGGTTCTTTGTCTGCACTCACACCAGGAGAGGAAG...TTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATAGCAGGGCCTCCTCTTaGAGGTGGAACTTCAATTCC +
Preference number: 4 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHSRASS*RWNFNS
Trigger: GGAATTGAAGTTCCACCTCCAAGAGGAGGCCCTGCT...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATAGAAGACACACTGAGTaGGGTATCATCAGGATCCGG +
Preference number: 4 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHRRHTE*GIIRIR
Trigger: CCGGATCCTGATGATACCTCACTCAGTGTGTCTTCT...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGGACAGCAGTGCCTGCTaGTGGTCTTTATCATCAGCT +
Preference number: 4 (lower is better)
Translates to: TQRARRQAWRAKEEAVREDSSAC*WSLSSA
Trigger: AGCTGATGATAAAGACCAGCAGCAGGCACTGCTGTC...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATCAACTGGTTCAATTTTaGAAGGTCGCTGGCACACAG +
Preference number: 4 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHQLVQF*KVAGTQ
Trigger: CTGTGTGCCAGCGACCTTGCAAAATTGAACCAGTTG...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGACTCTCCTGGTGTGAGTaGAGACAAAGAACCAGACTC +
Preference number: 4 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRLSWCE*RQRTRL
Trigger: GAGTCTGGTTCTTTGTCTGCACTCACACCAGGAGAG...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATCTCCTCTTGAGAGCTTaGTTCGGACAAACAGATGGA +
Preference number: 4 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHLLLRA*FGQTDG
Trigger: TCCATCTGTTTGTCCGAAGCAAGCTCTCAAGAGGAG...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATCCGGCGAGGCATGACTaGAATCCATCTCTTCTAATT +
Preference number: 4 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHPARHD*NPSLLI
Trigger: AATTAGAAGAGATGGATTGCAGTCATGCCTCGCCGG...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGTCGCTGGCACACAGATaGCTTTTGAGGTACTGTCAT +
Preference number: 4 (lower is better)
Translates to: TQRARRQAWRAKEEAVRESLAHR*LLRYCH
Trigger: ATGACAGTACCTCAAAAGCCATCTGTGTGCCAGCGA...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATAGCAGTGCCTGCTGCTaGTCTTTATCATCAGCTTTC +
Preference number: 4 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHSSACC*SLSSAF
Trigger: GAAAGCTGATGATAAAGACCAGCAGCAGGCACTGCT...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 72 bp GAGCTCCTTCAAGAGAACATAGTCAGAGGGAGAGGATaGCTGTCCAGACCTGTTCTGCAAGTGCAGAGTGCT +
Preference number: 4 (lower is better)
Translates to: ELLQENIVRGRG*LSRPVLQVQSA
Trigger: AGCACTCTGCACTTGCAGAACAGGTCTGGACAGCAATCCTCTCCCTCTGACTATGTTCTCTTGAAGGAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATAGTTCCTGCTGCTCCTaGTTCACAGCTTTTACTACT +
Preference number: 4 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHSSCCS*FTAFTT
Trigger: AGTAGTAAAAGCTGTGAATCAGGAGCAGCAGGAACT...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATGTCTCCAGTCTCCATTaGAATGGACAAACAAGTTCC +
Preference number: 4 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHVSSLH*NGQTSS
Trigger: GGAACTTGTTTGTCCATTGCAATGGAGACTGGAGAC...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGACTCCTCTTGAGAGCTTaGTTCGGACAAACAGATGGA +
Preference number: 4 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRLLLRA*FGQTDG
Trigger: TCCATCTGTTTGTCCGAAGCAAGCTCTCAAGAGGAG...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATCCAGTTCTTCTTCTCTaGCATATTCATCCTCTGCGT +
Preference number: 4 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHPVLLL*HIHPLR
Trigger: ACGCAGAGGATGAATATGCCAGAGAAGAAGAACTGG...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp ATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAATGGCAGGTTTCTTCCTaGTCCAGGCAAATTTGTACT +
Preference number: 4 (lower is better)
Translates to: MAENKAHTESQKTSMASQWQVSS*SRQICT
Trigger: AGTACAAATTTGCCTGGACCAGGAAGAAACCTGCCA...TTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp ATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAATATTTGTGCTCCCATTaGTGCCAGTTCTTCTTCTCT +
Preference number: 4 (lower is better)
Translates to: MAENKAHTESQKTSMASQYLCSH*CQFFFS
Trigger: AGAGAAGAAGAACTGGCATCAATGGGAGCACAAATA...TTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGATTATCTGCAGATACTaGCTGGTGCTCTTCATCCTT +
Preference number: 4 (lower is better)
Translates to: TQRARRQAWRAKEEAVREIICRY*LVLFIL
Trigger: AAGGATGAAGAGCACCAGGCAGTATCTGCAGATAAT...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp ATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAACCTTTGAATCCCAACTaGTTCAATTTTGCAAGGTCG +
Preference number: 4 (lower is better)
Translates to: MAENKAHTESQKTSMASQPLNPN*FNFARS
Trigger: CGACCTTGCAAAATTGAACCAGTTGGGATTCAAAGG...TTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATCAGTCTCCATTGCAATaGACAAACAAGTTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHQSPLQ*TNKFLL
Trigger: CAGAAGGAACTTGTTTGTCCATTGCAATGGAGACTG...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 72 bp TGGAAGACAGAAGCCATGAGAATAGTTACAGCAGAGTaGGCAATGGCTGAGAACAAGGCTCACACAGAGAGC +
Preference number: 4 (lower is better)
Translates to: WKTEAMRIVTAE*AMAENKAHTES
Trigger: GCTCTCTGTGTGAGCCTTGTTCTCAGCCATTGCCAACTCTGCTGTAACTATTCTCATGGCTTCTGTCTTCCA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp ATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAATGTTCAGGTTTATATaGCCTTTGAATCCCAACTGG +
Preference number: 4 (lower is better)
Translates to: MAENKAHTESQKTSMASQMFRFI*PLNPNW
Trigger: CCAGTTGGGATTCAAAGGTCATATAAACCTGAACAT...TTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGATCTGAGGGTAATCACTaGCTGCCAATGAAAACACTT +
Preference number: 4 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRSEGNH*LPMKTL
Trigger: AAGTGTTTTCATTGGCAGTCAGTGATTACCCTCAGA...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGAATTATCTGCAGATACTaGCTGGTGCTCTTCATCCTT +
Preference number: 4 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRIICRY*LVLFIL
Trigger: AAGGATGAAGAGCACCAGGCAGTATCTGCAGATAAT...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGTATTTTCACATTATCTaGAGATACTGCCTGGTGCTC +
Preference number: 4 (lower is better)
Translates to: TQRARRQAWRAKEEAVREYFHII*RYCLVL
Trigger: GAGCACCAGGCAGTATCTGCAGATAATGTGAAAATA...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGAGGCAAATTTGTACTTTaGTTCTCAGCTCGAAGGGAA +
Preference number: 4 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRGKFVL*FSARRE
Trigger: TTCCCTTCGAGCTGAGAACCAAAGTACAAATTTGCC...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGCTTCGGACAAACAGATaGACACTTCATCATTTCTGT +
Preference number: 4 (lower is better)
Translates to: TQRARRQAWRAKEEAVRELRTNR*TLHHFC
Trigger: ACAGAAATGATGAAGTGTCCATCTGTTTGTCCGAAG...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGTTATTGGCTGCCTTCTaGATAGGAATTTTATGTGCT +
Preference number: 4 (lower is better)
Translates to: TQRARRQAWRAKEEAVRELLAAF*IGILCA
Trigger: AGCACATAAAATTCCTATTCAGAAGGCAGCCAATAA...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATGGTTTATATGACCTTTaGATCCCAACTGGTTCAATT +
Preference number: 4 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHGLYDL*IPTGSI
Trigger: AATTGAACCAGTTGGGATTCAAAGGTCATATAAACC...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGCACAGAAAGGTTTCCTaGAATCTGGTAATTGTTTTG +
Preference number: 4 (lower is better)
Translates to: TQRARRQAWRAKEEAVREHRKVS*NLVIVL
Trigger: CAAAACAATTACCAGATTTCAGGAAACCTTTCTGTG...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGGTGCACACTGTAATATaGGCTGAAAGCAATTTTTAC +
Preference number: 4 (lower is better)
Translates to: TQRARRQAWRAKEEAVREVHTVI*AESNFY
Trigger: GTAAAAATTGCTTTCAGCTCATATTACAGTGTGCAC...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTGAAGTCCAAGAAGATTaGTGGCTTGAAGGGCGGGCA +
Preference number: 4 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSEVQED*WLEGRA
Trigger: TGCCCGCCCTTCAAGCCAGCAATCTTCTTGGACTTC...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTGAACCAGACTCAGGCTaGTCAGAGAAATCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSEPDSG*SEKSAG
Trigger: CCCTGCTGATTTCTCTGAGCAGCCTGAGTCTGGTTC...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGACTTCGGACAAACAGATaGACACTTCATCATTTCTGT +
Preference number: 4 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRLRTNR*TLHHFC
Trigger: ACAGAAATGATGAAGTGTCCATCTGTTTGTCCGAAG...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACAGAAGACACACTGAGTaGGGTATCATCAGGATCCGG +
Preference number: 4 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYRRHTE*GIIRIR
Trigger: CCGGATCCTGATGATACCTCACTCAGTGTGTCTTCT...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGACTAATGGTTGGCTTTTaGCCACATAAGTTATGTGAT +
Preference number: 4 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRLMVGF*PHKLCD
Trigger: ATCACATAACTTATGTGGGCAAAAGCCAACCATTAG...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTATACAGAGCCCAGGCTaGTCATACCATTGTCCCAGT +
Preference number: 4 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSIQSPG*SYHCPS
Trigger: ACTGGGACAATGGTATGACCAGCCTGGGCTCTGTAT...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 72 bp ACTGTCAAGGAACTCAGACCATTGCATACGTGTCACTaGAATGAACCCAAGGCATCTGGTTTATTGGGTCAG +
Preference number: 4 (lower is better)
Translates to: TVKELRPLHTCH*NEPKASGLLGQ
Trigger: CTGACCCAATAAACCAGATGCCTTGGGTTCATTCAAGTGACACGTATGCAATGGTCTGAGTTCCTTGACAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTAGAAGATTGCTGGCTTaGAGGGCGGGCAATATTAAC +
Preference number: 4 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSRRLLA*RAGNIN
Trigger: GTTAATATTGCCCGCCCTTCAAGCCAGCAATCTTCT...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACAGATGCTGTATGCAATaGGGTCCGTGGTGTCAAATG +
Preference number: 4 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYRCCMQ*GPWCQM
Trigger: CATTTGACACCACGGACCTCATTGCATACAGCATCT...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGTCTCGGTCACTGAATTaGGTGCGGTCCTGTAGTGCT +
Preference number: 4 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKESRSLN*VRSCSA
Trigger: AGCACTACAGGACCGCACTCAATTCAGTGACCGAGA...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTGTACTAGATGCTGTATaGAATGAGGTCCGTGGTGTC +
Preference number: 4 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSVLDAV*NEVRGV
Trigger: GACACCACGGACCTCATTGCATACAGCATCTAGTAC...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACGTACTAGATGCTGTATaGAATGAGGTCCGTGGTGTC +
Preference number: 4 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYVLDAV*NEVRGV
Trigger: GACACCACGGACCTCATTGCATACAGCATCTAGTAC...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGGAACCAGACTCAGGCTaGTCAGAGAAATCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEEPDSG*SEKSAG
Trigger: CCCTGCTGATTTCTCTGAGCAGCCTGAGTCTGGTTC...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACCCGGCGAGGCATGACTaGAATCCATCTCTTCTAATT +
Preference number: 4 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYPARHD*NPSLLI
Trigger: AATTAGAAGAGATGGATTGCAGTCATGCCTCGCCGG...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAATCTCGGTCACTGAATTaGGTGCGGTCCTGTAGTGCT +
Preference number: 4 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQSRSLN*VRSCSA
Trigger: AGCACTACAGGACCGCACTCAATTCAGTGACCGAGA...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAACCAAGTCTCGGTCACTaGATTGAGTGCGGTCCTGTA +
Preference number: 4 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQPSLGH*IECGPV
Trigger: TACAGGACCGCACTCAATTCAGTGACCGAGACTTGG...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCGAAGTCCAAGAAGATTaGTGGCTTGAAGGGCGGGCA +
Preference number: 4 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIEVQED*WLEGRA
Trigger: TGCCCGCCCTTCAAGCCAGCAATCTTCTTGGACTTC...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGAGGCCGGCTTCTGTGTaGTATTTCCTCCCAGAATTC +
Preference number: 4 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKERPASV*YFLPEF
Trigger: GAATTCTGGGAGGAAATAGCACACAGAAGCCGGCCT...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTTGGCAGGTTTCTTCCTaGTCCAGGCAAATTTGTACT +
Preference number: 4 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSWQVSS*SRQICT
Trigger: AGTACAAATTTGCCTGGACCAGGAAGAAACCTGCCA...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAACCCAGCTTCCTCTCCTaGTGTGAGTGCAGACAAAGA +
Preference number: 4 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQPSFLS*CECRQR
Trigger: TCTTTGTCTGCACTCACACCAGGAGAGGAAGCTGGG...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 72 bp AGTGCTTCTCCAATCTTCCCTCATGTTTATGCAGCTTaGGTGGCAATAATCAACTCAAAAGTCCCACAGACT +
Preference number: 4 (lower is better)
Translates to: SASPIFPHVYAA*VAIINSKVPQT
Trigger: AGTCTGTGGGACTTTTGAGTTGATTATTGCCACCAAAGCTGCATAAACATGAGGGAAGATTGGAGAAGCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTGCGCTACTTGTCTTTaGACAGGAATGTGCAATTGT +
Preference number: 4 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYCATCL*TGMCNC
Trigger: ACAATTGCACATTCCTGTTCAAAGACAAGTAGCGCA...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATCCAAGTCTCGGTCACTaGATTGAGTGCGGTCCTGTA +
Preference number: 4 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDPSLGH*IECGPV
Trigger: TACAGGACCGCACTCAATTCAGTGACCGAGACTTGG...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATCTTCCTCTCCTGGTGTaGGTGCAGACAAAGAACCAG +
Preference number: 4 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDLPLLV*VQTKNQ
Trigger: CTGGTTCTTTGTCTGCACTCACACCAGGAGAGGAAG...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGCAACTGGTTCAATTTTaGAAGGTCGCTGGCACACAG +
Preference number: 4 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEQLVQF*KVAGTQ
Trigger: CTGTGTGCCAGCGACCTTGCAAAATTGAACCAGTTG...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACCCTTTGAATCCCAACTaGTTCAATTTTGCAAGGTCG +
Preference number: 4 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYPLNPN*FNFARS
Trigger: CGACCTTGCAAAATTGAACCAGTTGGGATTCAAAGG...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATCCCAGCTTCCTCTCCTaGTGTGAGTGCAGACAAAGA +
Preference number: 4 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDPSFLS*CECRQR
Trigger: TCTTTGTCTGCACTCACACCAGGAGAGGAAGCTGGG...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 72 bp AGTAGTTTCATGGTTTTCCTATTGAAGTTCTTGGGATaGAACTGGGGCCTTGTGTACATGCTAAGCAAGTGT +
Preference number: 4 (lower is better)
Translates to: SSFMVFLLKFLG*NWGLVYMLSKC
Trigger: ACACTTGCTTAGCATGTACACAAGGCCCCAGTTCAATCCCAAGAACTTCAATAGGAAAACCATGAAACTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCAGAAGATTGCTGGCTTaGAGGGCGGGCAATATTAAC +
Preference number: 4 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIRRLLA*RAGNIN
Trigger: GTTAATATTGCCCGCCCTTCAAGCCAGCAATCTTCT...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACATGTTCAGGTTTATATaGCCTTTGAATCCCAACTGG +
Preference number: 4 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYMFRFI*PLNPNW
Trigger: CCAGTTGGGATTCAAAGGTCATATAAACCTGAACAT...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTATCACTGACTGCCAATaGAAACACTTCACGAATTTC +
Preference number: 4 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSITDCQ*KHFTNF
Trigger: GAAATTCGTGAAGTGTTTTCATTGGCAGTCAGTGAT...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCAGATGCTGTATGCAATaGGGTCCGTGGTGTCAAATG +
Preference number: 4 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIRCCMQ*GPWCQM
Trigger: CATTTGACACCACGGACCTCATTGCATACAGCATCT...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACATAAAGAAGACACACTaGGTGAGGTATCATCAGGAT +
Preference number: 4 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYIKKTH*VRYHQD
Trigger: ATCCTGATGATACCTCACTCAGTGTGTCTTCTTTAT...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATAGGCCGGCTTCTGTGTaGTATTTCCTCCCAGAATTC +
Preference number: 4 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDRPASV*YFLPEF
Trigger: GAATTCTGGGAGGAAATAGCACACAGAAGCCGGCCT...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATCTCTCCTGGTGTGAGTaGAGACAAAGAACCAGACTC +
Preference number: 4 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDLSWCE*RQRTRL
Trigger: GAGTCTGGTTCTTTGTCTGCACTCACACCAGGAGAG...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATGTCCAAGAAGATTGCTaGCTTGAAGGGCGGGCAATA +
Preference number: 4 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDVQEDC*LEGRAI
Trigger: TATTGCCCGCCCTTCAAGCCAGCAATCTTCTTGGAC...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCTCGCTGGCACACAGATaGCTTTTGAGGTACTGTCAT +
Preference number: 4 (lower is better)
Translates to: VGIEKNTEKEISEMVLEISLAHR*LLRYCH
Trigger: ATGACAGTACCTCAAAAGCCATCTGTGTGCCAGCGA...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATATACAGAGCCCAGGCTaGTCATACCATTGTCCCAGT +
Preference number: 4 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDIQSPG*SYHCPS
Trigger: ACTGGGACAATGGTATGACCAGCCTGGGCTCTGTAT...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGTGCCCTGGTCTCATTTaGGATAAGTTCATTGGACTC +
Preference number: 4 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKECPGLI*DKFIGL
Trigger: GAGTCCAATGAACTTATCCCAAATGAGACCAGGGCA...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCAGCAGTGCCTGCTGCTaGTCTTTATCATCAGCTTTC +
Preference number: 4 (lower is better)
Translates to: VGIEKNTEKEISEMVLEISSACC*SLSSAF
Trigger: GAAAGCTGATGATAAAGACCAGCAGCAGGCACTGCT...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAAGTTCCTGCTGCTCCTaGTTCACAGCTTTTACTACT +
Preference number: 4 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQSSCCS*FTAFTT
Trigger: AGTAGTAAAAGCTGTGAATCAGGAGCAGCAGGAACT...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGTATTTGTGCTCCCATTaGTGCCAGTTCTTCTTCTCT +
Preference number: 4 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEYLCSH*CQFFFS
Trigger: AGAGAAGAAGAACTGGCATCAATGGGAGCACAAATA...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCGTCTCCAGTCTCCATTaGAATGGACAAACAAGTTCC +
Preference number: 4 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIVSSLH*NGQTSS
Trigger: GGAACTTGTTTGTCCATTGCAATGGAGACTGGAGAC...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAACCAGTTCTTCTTCTCTaGCATATTCATCCTCTGCGT +
Preference number: 4 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQPVLLL*HIHPLR
Trigger: ACGCAGAGGATGAATATGCCAGAGAAGAAGAACTGG...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAATGCGCTACTTGTCTTTaGACAGGAATGTGCAATTGT +
Preference number: 4 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQCATCL*TGMCNC
Trigger: ACAATTGCACATTCCTGTTCAAAGACAAGTAGCGCA...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAATCTGAGGGTAATCACTaGCTGCCAATGAAAACACTT +
Preference number: 4 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQSEGNH*LPMKTL
Trigger: AAGTGTTTTCATTGGCAGTCAGTGATTACCCTCAGA...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR GCA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGTATTTTCACATTATCTaGAGATACTGCCTGGTGCTC +
Preference number: 4 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEYFHII*RYCLVL
Trigger: GAGCACCAGGCAGTATCTGCAGATAATGTGAAAATA...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCGGCAAATTTGTACTTTaGTTCTCAGCTCGAAGGGAA +
Preference number: 4 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIGKFVL*FSARRE
Trigger: TTCCCTTCGAGCTGAGAACCAAAGTACAAATTTGCC...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATTGCCCTGGTCTCATTTaGGATAAGTTCATTGGACTC +
Preference number: 4 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDCPGLI*DKFIGL
Trigger: GAGTCCAATGAACTTATCCCAAATGAGACCAGGGCA...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 72 bp ATGGAAGAGGACTATCAGTTTATACATATGCACCCCTaGGAGGATGACTACAATCCAGAACATGTTCTTAAT +
Preference number: 4 (lower is better)
Translates to: MEEDYQFIHMHP*EDDYNPEHVLN
Trigger: ATTAAGAACATGTTCTGGATTGTAGTCATCCTCCAAGGGGTGCATATGTATAAACTGATAGTCCTCTTCCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAATAAAGAAGACACACTaGGTGAGGTATCATCAGGAT +
Preference number: 4 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQIKKTH*VRYHQD
Trigger: ATCCTGATGATACCTCACTCAGTGTGTCTTCTTTAT...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CCA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATCAGTCTCCATTGCAATaGACAAACAAGTTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDQSPLQ*TNKFLL
Trigger: CAGAAGGAACTTGTTTGTCCATTGCAATGGAGACTG...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 72 bp CAGTACTACACCATCCTTCGCTTAGAGACAAACAAATaGAGAAATGTTGCTAAGATGTTTGCTCACCTTTTA +
Preference number: 4 (lower is better)
Translates to: QYYTILRLETNK*RNVAKMFAHLL
Trigger: TAAAAGGTGAGCAAACATCTTAGCAACATTTCTCAATTTGTTTGTCTCTAAGCGAAGGATGGTGTAGTACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
3UTR CAA 72 bp ATATGTTTCCATTATAGTAGTTTCATGGTTTTCCTATaGAAGTTCTTGGGATTGAACTGGGGCCTTGTGTAC +
Preference number: 4 (lower is better)
Translates to: ICFHYSSFMVFL*KFLGLNWGLVY
Trigger: GTACACAAGGCCCCAGTTCAATCCCAAGAACTTCAATAGGAAAACCATGAAACTACTATAATGGAAACATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR TCA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCGGTTTATATGACCTTTaGATCCCAACTGGTTCAATT +
Preference number: 4 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIGLYDL*IPTGSI
Trigger: AATTGAACCAGTTGGGATTCAAAGGTCATATAAACC...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATCAGCAGGGCCTCCTCTaGGAGGTGGAACTTCAATTC +
Preference number: 5 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHQQGLL*EVELQF
Trigger: GAATTGAAGTTCCACCTCCAAGAGGAGGCCCTGCTG...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATCCAACTGGTTCAATTTaGCAAGGTCGCTGGCACACA +
Preference number: 5 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHPTGSI*QGRWHT
Trigger: TGTGTGCCAGCGACCTTGCAAAATTGAACCAGTTGG...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp ATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAACCAACTGGTTCAATTTaGCAAGGTCGCTGGCACACA +
Preference number: 5 (lower is better)
Translates to: MAENKAHTESQKTSMASQPTGSI*QGRWHT
Trigger: TGTGTGCCAGCGACCTTGCAAAATTGAACCAGTTGG...TTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 90 bp TGCGTCTCCAGTCTCCATTGCAATGGACAAACAAGTTCCTTCTGCTaGGGCCGGCTTCTGTGTGCTATTTCCTCCCAGAATTCTCTGAGG +
Preference number: 5 (lower is better)
Translates to: CVSSLHCNGQTSSFC*GRLLCAISSQNSLR
Trigger: CCTCAGAGAATTCTGGGAGGAAATAGCACACAGAAGCCGGCCTCAGCAGAAGGAACTTGTTTGTCCATTGCAATGGAGACTGGAGACGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp ATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAACGTCTCCAGTCTCCATaGCAATGGACAAACAAGTTC +
Preference number: 5 (lower is better)
Translates to: MAENKAHTESQKTSMASQRLQSP*QWTNKF
Trigger: GAACTTGTTTGTCCATTGCAATGGAGACTGGAGACG...TTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp ACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAGAAGAAGCGGTGAGAGAGCTTACAGTGCGCTACTaGTCTTTGAACAGGAATGTG +
Preference number: 5 (lower is better)
Translates to: TQRARRQAWRAKEEAVRELTVRY*SLNRNV
Trigger: CACATTCCTGTTCAAAGACAAGTAGCGCACTGTAAG...CTCTCTCACCGCTTCTTCTTTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATTCACCATTTGTGAATTaGGCAGGTTTCTTCCTGGTC +
Preference number: 5 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHSPFVN*AGFFLV
Trigger: GACCAGGAAGAAACCTGCCAAATTCACAAATGGTGA...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp GGAGACACAGACTGGCAAGATCCCCTAGCAGAGCACATGGAAGACAGAAGCCATTTATTTGTGCTCCCATaGATGCCAGTTCTTCTTCTC +
Preference number: 5 (lower is better)
Translates to: GDTDWQDPLAEHMEDRSHLFVLP*MPVLLL
Trigger: GAGAAGAAGAACTGGCATCAATGGGAGCACAAATAA...ATGGCTTCTGTCTTCCATGTGCTCTGCTAGGGGATCTTGCCAGTCTGTGTCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGAAGGCAAATTTGTACTTaGGTTCTCAGCTCGAAGGGA +
Preference number: 5 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRRQICT*VLSSKG
Trigger: TCCCTTCGAGCTGAGAACCAAAGTACAAATTTGCCT...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGATCACCATTTGTGAATTaGGCAGGTTTCTTCCTGGTC +
Preference number: 5 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRSPFVN*AGFFLV
Trigger: GACCAGGAAGAAACCTGCCAAATTCACAAATGGTGA...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp CCTCCTCCTCCTCTGGCAGTCAGAGATCTGCCTCAGCTAAAGGTACAAAGAAGAACGAATTTCCAAGTTTaGTGTTCTACAGCAAGGGTC +
Preference number: 5 (lower is better)
Translates to: PPPPLAVRDLPQLKVQRRTNFQV*CSTARV
Trigger: GACCCTTGCTGTAGAACACAAAACTTGGAAATTCGT...TCTTCTTTGTACCTTTAGCTGAGGCAGATCTCTGACTGCCAGAGGAGGAGGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp ATGGCTGAGAACAAGGCTCACACAGAGAGCCAGAAGACAAGCATGGCGAGCCAAAAAACCTTGAGTAGCTaGTTATTTGTGCTCCCATTG +
Preference number: 5 (lower is better)
Translates to: MAENKAHTESQKTSMASQKTLSS*LFVLPL
Trigger: CAATGGGAGCACAAATAACAAGCTACTCAAGGTTTT...TTGGCTCGCCATGCTTGTCTTCTGGCTCTCTGTGTGAGCCTTGTTCTCAGCCAT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTCAGCAGGGCCTCCTCTaGGAGGTGGAACTTCAATTC +
Preference number: 5 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSQQGLL*EVELQF
Trigger: GAATTGAAGTTCCACCTCCAAGAGGAGGCCCTGCTG...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 90 bp GCAAGGTCGCTGGCACACAGATGGCTTTTGAGGTACTGTCATTTCTaGAGCTTGCACCGGAGAACTTCCATAGCTTTTCTTTGTGTGATT +
Preference number: 5 (lower is better)
Translates to: ARSLAHRWLLRYCHF*SLHRRTSIAFLCVI
Trigger: AATCACACAAAGAAAAGCTATGGAAGTTCTCCGGTGCAAGCTTCAGAAATGACAGTACCTCAAAAGCCATCTGTGTGCCAGCGACCTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 90 bp AAAGAAGACACACTGAGTGAGGTATCATCAGGATCCGGCGAGGCATaGCTGCAATCCATCTCTTCTAATTCTGGAGGTAAATCTGACAGC +
Preference number: 5 (lower is better)
Translates to: KEDTLSEVSSGSGEA*LQSISSNSGGKSDS
Trigger: GCTGTCAGATTTACCTCCAGAATTAGAAGAGATGGATTGCAGTCATGCCTCGCCGGATCCTGATGATACCTCACTCAGTGTGTCTTCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACACTCCTCTTGAGAGCTaGCTTCGGACAAACAGATGG +
Preference number: 5 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYTPLES*LRTNRW
Trigger: CCATCTGTTTGTCCGAAGCAAGCTCTCAAGAGGAGT...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 90 bp TTATGTGCCCTGGTCTCATTTGGGATAAGTTCATTGGACTCCTCTTaGGAGCTTGCTTCGGACAAACAGATGGACACTTCATCATTTCTG +
Preference number: 5 (lower is better)
Translates to: LCALVSFGISSLDSS*ELASDKQMDTSSFL
Trigger: CAGAAATGATGAAGTGTCCATCTGTTTGTCCGAAGCAAGCTCTCAAGAGGAGTCCAATGAACTTATCCCAAATGAGACCAGGGCACATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS GCA 90 bp TTTCACATTATCTGCAGATACTGCCTGGTGCTCTTCATCCTTATGTaGCCTGGTCTCATTTGGGATAAGTTCATTGGACTCCTCTTGAGA +
Preference number: 5 (lower is better)
Translates to: FHIICRYCLVLFILM*PGLIWDKFIGLLLR
Trigger: TCTCAAGAGGAGTCCAATGAACTTATCCCAAATGAGACCAGGGCACATAAGGATGAAGAGCACCAGGCAGTATCTGCAGATAATGTGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 90 bp AAGTTATGTGATGCCAGACCTGCATGTTCAGGTTTATATGACCTTTaGATCCCAACTGGTTCAATTTTGCAAGGTCGCTGGCACACAGAT +
Preference number: 5 (lower is better)
Translates to: KLCDARPACSGLYDL*IPTGSILQGRWHTD
Trigger: ATCTGTGTGCCAGCGACCTTGCAAAATTGAACCAGTTGGGATTCAAAGGTCATATAAACCTGAACATGCAGGTCTGGCATCACATAACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS GCA 90 bp TCCAAGTTTTGTGTTCTACAGCAAGGGTCTCTAATGGTTGGCTTTTaGCCACATAAGTTATGTGATGCCAGACCTGCATGTTCAGGTTTA +
Preference number: 5 (lower is better)
Translates to: SKFCVLQQGSLMVGF*PHKLCDARPACSGL
Trigger: TAAACCTGAACATGCAGGTCTGGCATCACATAACTTATGTGGGCAAAAGCCAACCATTAGAGACCCTTGCTGTAGAACACAAAACTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS GCA 90 bp CTGGTCCAGGCAAATTTGTACTTTGGTTCTCAGCTCGAAGGGAATTaGCACTTTCATAAAACCTTGAGTAGCTTGTTATTTGTGCTCCCA +
Preference number: 5 (lower is better)
Translates to: LVQANLYFGSQLEGN*HFHKTLSSLLFVLP
Trigger: TGGGAGCACAAATAACAAGCTACTCAAGGTTTTATGAAAGTGGCAATTCCCTTCGAGCTGAGAACCAAAGTACAAATTTGCCTGGACCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS GCA 90 bp CCTGGTCTCATTTGGGATAAGTTCATTGGACTCCTCTTGAGAGCTTaGTTCGGACAAACAGATGGACACTTCATCATTTCTGTCATTATC +
Preference number: 5 (lower is better)
Translates to: PGLIWDKFIGLLLRA*FGQTDGHFIISVII
Trigger: GATAATGACAGAAATGATGAAGTGTCCATCTGTTTGTCCGAAGCAAGCTCTCAAGAGGAGTCCAATGAACTTATCCCAAATGAGACCAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS GCA 90 bp CAATCCATCTCTTCTAATTCTGGAGGTAAATCTGACAGCAGTGCCTaGTGCTGGTCTTTATCATCAGCTTTCATAGCGAGAATCAGGTTT +
Preference number: 5 (lower is better)
Translates to: QSISSNSGGKSDSSA*CWSLSSAFIARIRF
Trigger: AAACCTGATTCTCGCTATGAAAGCTGATGATAAAGACCAGCAGCAGGCACTGCTGTCAGATTTACCTCCAGAATTAGAAGAGATGGATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTGTGCGCTACTTGTCTTaGAACAGGAATGTGCAATTG +
Preference number: 5 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSVRYLS*NRNVQL
Trigger: CAATTGCACATTCCTGTTCAAAGACAAGTAGCGCAC...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACGTGCGCTACTTGTCTTaGAACAGGAATGTGCAATTG +
Preference number: 5 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYVRYLS*NRNVQL
Trigger: CAATTGCACATTCCTGTTCAAAGACAAGTAGCGCAC...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACAGGCAAATTTGTACTTaGGTTCTCAGCTCGAAGGGA +
Preference number: 5 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYRQICT*VLSSKG
Trigger: TCCCTTCGAGCTGAGAACCAAAGTACAAATTTGCCT...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTATTTTTCTTCGCTTATaGCCAACCCACGTCCTGACT +
Preference number: 5 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSIFLRL*PTHVLT
Trigger: AGTCAGGACGTGGGTTGGCAATAAGCGAAGAAAAAT...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113422.9
CDS TCA 90 bp GCTATTTCCTCCCAGAATTCTCTGAGGGTAATCACTGACTGCCAATaGAAACACTTCACGAATTTCCAAGTTTTGTGTTCTACAGCAAGG +
Preference number: 5 (lower is better)
Translates to: AISSQNSLRVITDCQ*KHFTNFQVLCSTAR
Trigger: CCTTGCTGTAGAACACAAAACTTGGAAATTCGTGAAGTGTTTTCATTGGCAGTCAGTGATTACCCTCAGAGAATTCTGGGAGGAAATAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 90 bp GCTTCTGTGTGCTATTTCCTCCCAGAATTCTCTGAGGGTAATCACTaGCTGCCAATGAAAACACTTCACGAATTTCCAAGTTTTGTGTTC +
Preference number: 5 (lower is better)
Translates to: ASVCYFLPEFSEGNH*LPMKTLHEFPSFVF
Trigger: GAACACAAAACTTGGAAATTCGTGAAGTGTTTTCATTGGCAGTCAGTGATTACCCTCAGAGAATTCTGGGAGGAAATAGCACACAGAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS GCA 90 bp CATGTTCAGGTTTATATGACCTTTGAATCCCAACTGGTTCAATTTTaGAAGGTCGCTGGCACACAGATGGCTTTTGAGGTACTGTCATTT +
Preference number: 5 (lower is better)
Translates to: HVQVYMTFESQLVQF*KVAGTQMAFEVLSF
Trigger: AAATGACAGTACCTCAAAAGCCATCTGTGTGCCAGCGACCTTGCAAAATTGAACCAGTTGGGATTCAAAGGTCATATAAACCTGAACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAACTCCTCTTGAGAGCTaGCTTCGGACAAACAGATGG +
Preference number: 5 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQTPLES*LRTNRW
Trigger: CCATCTGTTTGTCCGAAGCAAGCTCTCAAGAGGAGT...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGTTCATTGGACTCCTCTaGAGAGCTTGCTTCGGACAA +
Preference number: 5 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKEFIGLL*RACFGQ
Trigger: TTGTCCGAAGCAAGCTCTCAAGAGGAGTCCAATGAA...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 90 bp TCCCCTAGGAGCACAGAAGCATTCTTACAGTGCGCTACTTGTCTTTaGACAGGAATGTGCAATTGTAATTCAGTGTCATTTTTATTGGCT +
Preference number: 5 (lower is better)
Translates to: SPRSTEAFLQCATCL*TGMCNCNSVSFLLA
Trigger: AGCCAATAAAAATGACACTGAATTACAATTGCACATTCCTGTTCAAAGACAAGTAGCGCACTGTAAGAATGCTTCTGTGCTCCTAGGGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS GCA 90 bp ATACCAGTTACAATGACATCATTATTGGCAGAAGTCCAAGAAGATTaGTGGCTTGAAGGGCGGGCAATATTAACCACATTTCTGACTGTA +
Preference number: 5 (lower is better)
Translates to: IPVTMTSLLAEVQED*WLEGRAILTTFLTV
Trigger: TACAGTCAGAAATGTGGTTAATATTGCCCGCCCTTCAAGCCAGCAATCTTCTTGGACTTCTGCCAATAATGATGTCATTGTAACTGGTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 90 bp CTTGCTTACTTGATGAGCTTACTGGACTGTATATACCAGTTACAATaGCATCATTATTGGCAGAAGTCCAAGAAGATTGCTGGCTTGAAG +
Preference number: 5 (lower is better)
Translates to: LAYLMSLLDCIYQLQ*HHYWQKSKKIAGLK
Trigger: CTTCAAGCCAGCAATCTTCTTGGACTTCTGCCAATAATGATGTCATTGTAACTGGTATATACAGTCCAGTAAGCTCATCAAGTAAGCAAG
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CCA 90 bp TCATCATCGATAATTTCTATTTTCACATTATCTGCAGATACTGCCTaGTGCTCTTCATCCTTATGTGCCCTGGTCTCATTTGGGATAAGT +
Preference number: 5 (lower is better)
Translates to: SSSIISIFTLSADTA*CSSSLCALVSFGIS
Trigger: ACTTATCCCAAATGAGACCAGGGCACATAAGGATGAAGAGCACCAGGCAGTATCTGCAGATAATGTGAAAATAGAAATTATCGATGATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp AGGAATAACCCAGAGTTCTACACAGGAAAAACCTACATTGAAGAAGAAAAGGAGTTATTTGTGCTCCCATaGATGCCAGTTCTTCTTCTC +
Preference number: 5 (lower is better)
Translates to: RNNPEFYTGKTYIEEEKELFVLP*MPVLLL
Trigger: GAGAAGAAGAACTGGCATCAATGGGAGCACAAATAA...CTCCTTTTCTTCTTCAATGTAGGTTTTTCCTGTGTAGAACTCTGGGTTATTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATCTGGTCCAGGCAAATTaGTACTTTGGTTCTCAGCTC +
Preference number: 5 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDLVQAN*YFGSQL
Trigger: GAGCTGAGAACCAAAGTACAAATTTGCCTGGACCAG...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp GACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTCTATAACCTCAGTTGGTTaGATGATACAAAATGTGGAG +
Preference number: 5 (lower is better)
Translates to: DYSDYSRSDYEHSRKGYSITSVG*MIQNVE
Trigger: CTCCACATTTTGTATCATCAAACCAACTGAGGTTAT...AGAGTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATTTCATTGGACTCCTCTaGAGAGCTTGCTTCGGACAA +
Preference number: 5 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDFIGLL*RACFGQ
Trigger: TTGTCCGAAGCAAGCTCTCAAGAGGAGTCCAATGAA...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp AGAGACTACTCTGATTACAGCCGGTCAGACTATGAGCATTCTAGAAAAGGATACTGTTCTACCTCAGAATaGCTTATCATGTCACTTTCT +
Preference number: 5 (lower is better)
Translates to: RDYSDYSRSDYEHSRKGYCSTSE*LIMSLS
Trigger: AGAAAGTGACATGATAAGCAATTCTGAGGTAGAACA...GTATCCTTTTCTAGAATGCTCATAGTCTGACCGGCTGTAATCAGAGTAGTCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp GGTCATAAGTTAGTTGGCTATTTCATTAGAGCATTACAAAGCATAGCTTGGCAAACGAATTTCCAAGTTTaGTGTTCTACAGCAAGGGTC +
Preference number: 5 (lower is better)
Translates to: GHKLVGYFIRALQSIAWQTNFQV*CSTARV
Trigger: GACCCTTGCTGTAGAACACAAAACTTGGAAATTCGT...TTGCCAAGCTATGCTTTGTAATGCTCTAATGAAATAGCCAACTAACTTATGACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp CAGGAACAGATTGTAGATAAAAACATCTTAGTGTACCGTAGGATAATTTGGGATAAAACCTTGAGTAGCTaGTTATTTGTGCTCCCATTG +
Preference number: 5 (lower is better)
Translates to: QEQIVDKNILVYRRIIWDKTLSS*LFVLPL
Trigger: CAATGGGAGCACAAATAACAAGCTACTCAAGGTTTT...ATCCCAAATTATCCTACGGTACACTAAGATGTTTTTATCTACAATCTGTTCCTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCATAACCTCAGTTGGTTaGATGATACAAAATGTGGAG +
Preference number: 5 (lower is better)
Translates to: VGIEKNTEKEISEMVLEIITSVG*MIQNVE
Trigger: CTCCACATTTTGTATCATCAAACCAACTGAGGTTAT...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS-3UTR CAA 90 bp GTAGGGATTGAGAAAAATACAGAAAAAGAGATATCGGAAATGGTCCTGGAAATCTGTTCTACCTCAGAATaGCTTATCATGTCACTTTCT +
Preference number: 5 (lower is better)
Translates to: VGIEKNTEKEISEMVLEICSTSE*LIMSLS
Trigger: AGAAAGTGACATGATAAGCAATTCTGAGGTAGAACA...GATTTCCAGGACCATTTCCGATATCTCTTTTTCTGTATTTTTCTCAATCCCTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 72 bp AGTCTCCATTGCAATGGACAAACAAGTTCCTTCTGCTaGGGCCGGCTTCTGTGTGCTATTTCCTCCCAGAAT +
Preference number: 6 (lower is better)
Translates to: SLHCNGQTSSFC*GRLLCAISSQN
Trigger: ATTCTGGGAGGAAATAGCACACAGAAGCCGGCCTCAGCAGAAGGAACTTGTTTGTCCATTGCAATGGAGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS GCA 72 bp ACAAACAAGTTCCTTCTGCTGAGGCCGGCTTCTGTGTaGTATTTCCTCCCAGAATTCTCTGAGGGTAATCAC +
Preference number: 6 (lower is better)
Translates to: TNKFLLLRPASV*YFLPEFSEGNH
Trigger: GTGATTACCCTCAGAGAATTCTGGGAGGAAATAGCACACAGAAGCCGGCCTCAGCAGAAGGAACTTGTTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CAA 90 bp GCTTCAATCTTCTCTCTACATACAGAGCCCAGGCTGGTCATACCATaGTCCCAGTACTTCTTAAGAGTAGCCAAGTCTCGGTCACTGAAT +
Preference number: 6 (lower is better)
Translates to: ASIFSLHTEPRLVIP*SQYFLRVAKSRSLN
Trigger: ATTCAGTGACCGAGACTTGGCTACTCTTAAGAAGTACTGGGACAATGGTATGACCAGCCTGGGCTCTGTATGTAGAGAGAAGATTGAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 72 bp TCAATTTTGCAAGGTCGCTGGCACACAGATGGCTTTTaGGGTACTGTCATTTCTGAAGCTTGCACCGGAGAA +
Preference number: 6 (lower is better)
Translates to: SILQGRWHTDGF*GTVISEACTGE
Trigger: TTCTCCGGTGCAAGCTTCAGAAATGACAGTACCTCAAAAGCCATCTGTGTGCCAGCGACCTTGCAAAATTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 72 bp ACACTGAGTGAGGTATCATCAGGATCCGGCGAGGCATaGCTGCAATCCATCTCTTCTAATTCTGGAGGTAAA +
Preference number: 6 (lower is better)
Translates to: TLSEVSSGSGEA*LQSISSNSGGK
Trigger: TTTACCTCCAGAATTAGAAGAGATGGATTGCAGTCATGCCTCGCCGGATCCTGATGATACCTCACTCAGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 72 bp TGTCTGAGGCATTTTTCTCTGATAAAGAAGACACACTaGGTGAGGTATCATCAGGATCCGGCGAGGCATGAC +
Preference number: 6 (lower is better)
Translates to: CLRHFSLIKKTH*VRYHQDPARHD
Trigger: GTCATGCCTCGCCGGATCCTGATGATACCTCACTCAGTGTGTCTTCTTTATCAGAGAAAAATGCCTCAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS GCA 72 bp ATCTGCAGATACTGCCTGGTGCTCTTCATCCTTATGTaGCCTGGTCTCATTTGGGATAAGTTCATTGGACTC +
Preference number: 6 (lower is better)
Translates to: ICRYCLVLFILM*PGLIWDKFIGL
Trigger: GAGTCCAATGAACTTATCCCAAATGAGACCAGGGCACATAAGGATGAAGAGCACCAGGCAGTATCTGCAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CAA 72 bp GTGAATTTGGCAGGTTTCTTCCTGGTCCAGGCAAATTaGTACTTTGGTTCTCAGCTCGAAGGGAATTGCCAC +
Preference number: 6 (lower is better)
Translates to: VNLAGFFLVQAN*YFGSQLEGNCH
Trigger: GTGGCAATTCCCTTCGAGCTGAGAACCAAAGTACAAATTTGCCTGGACCAGGAAGAAACCTGCCAAATTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 72 bp CTGGCACACAGATGGCTTTTGAGGTACTGTCATTTCTaGAGCTTGCACCGGAGAACTTCCATAGCTTTTCTT +
Preference number: 6 (lower is better)
Translates to: LAHRWLLRYCHF*SLHRRTSIAFL
Trigger: AAGAAAAGCTATGGAAGTTCTCCGGTGCAAGCTTCAGAAATGACAGTACCTCAAAAGCCATCTGTGTGCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 72 bp GATGCCAGACCTGCATGTTCAGGTTTATATGACCTTTaGATCCCAACTGGTTCAATTTTGCAAGGTCGCTGG +
Preference number: 6 (lower is better)
Translates to: DARPACSGLYDL*IPTGSILQGRW
Trigger: CCAGCGACCTTGCAAAATTGAACCAGTTGGGATTCAAAGGTCATATAAACCTGAACATGCAGGTCTGGCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 72 bp TACTTCTTAAGAGTAGCCAAGTCTCGGTCACTGAATTaGGTGCGGTCCTGTAGTGCTCTTTTCCTAGAACAC +
Preference number: 6 (lower is better)
Translates to: YFLRVAKSRSLN*VRSCSALFLEH
Trigger: GTGTTCTAGGAAAAGAGCACTACAGGACCGCACTCAATTCAGTGACCGAGACTTGGCTACTCTTAAGAAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 72 bp CTGGTCTCATTTGGGATAAGTTCATTGGACTCCTCTTaGGAGCTTGCTTCGGACAAACAGATGGACACTTCA +
Preference number: 6 (lower is better)
Translates to: LVSFGISSLDSS*ELASDKQMDTS
Trigger: TGAAGTGTCCATCTGTTTGTCCGAAGCAAGCTCTCAAGAGGAGTCCAATGAACTTATCCCAAATGAGACCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS GCA 72 bp TGTGTTCTACAGCAAGGGTCTCTAATGGTTGGCTTTTaGCCACATAAGTTATGTGATGCCAGACCTGCATGT +
Preference number: 6 (lower is better)
Translates to: CVLQQGSLMVGF*PHKLCDARPAC
Trigger: ACATGCAGGTCTGGCATCACATAACTTATGTGGGCAAAAGCCAACCATTAGAGACCCTTGCTGTAGAACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CAA 72 bp TGGCAGGTTTCTTCCTGGTCCAGGCAAATTTGTACTTaGGTTCTCAGCTCGAAGGGAATTGCCACTTTCATA +
Preference number: 6 (lower is better)
Translates to: WQVSSWSRQICT*VLSSKGIATFI
Trigger: TATGAAAGTGGCAATTCCCTTCGAGCTGAGAACCAAAGTACAAATTTGCCTGGACCAGGAAGAAACCTGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CAA 90 bp CTTATGTGCCCTGGTCTCATTTGGGATAAGTTCATTGGACTCCTCTaGAGAGCTTGCTTCGGACAAACAGATGGACACTTCATCATTTCT +
Preference number: 6 (lower is better)
Translates to: LMCPGLIWDKFIGLL*RACFGQTDGHFIIS
Trigger: AGAAATGATGAAGTGTCCATCTGTTTGTCCGAAGCAAGCTCTCAAGAGGAGTCCAATGAACTTATCCCAAATGAGACCAGGGCACATAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CAA 72 bp GATTCACAGCTTTTACTACTCATTTTTCTTCGCTTATaGCCAACCCACGTCCTGACTACACTGAAGTCCAGC +
Preference number: 6 (lower is better)
Translates to: DSQLLLLIFLRL*PTHVLTTLKSS
Trigger: GCTGGACTTCAGTGTAGTCAGGACGTGGGTTGGCAATAAGCGAAGAAAAATGAGTAGTAAAAGCTGTGAATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113422.9
CDS CAA 90 bp GATGAGCTTACTGGACTGTATATACCAGTTACAATGACATCATTATaGGCAGAAGTCCAAGAAGATTGCTGGCTTGAAGGGCGGGCAATA +
Preference number: 6 (lower is better)
Translates to: DELTGLYIPVTMTSL*AEVQEDCWLEGRAI
Trigger: TATTGCCCGCCCTTCAAGCCAGCAATCTTCTTGGACTTCTGCCAATAATGATGTCATTGTAACTGGTATATACAGTCCAGTAAGCTCATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CAA 90 bp TGCCACTTTCATAAAACCTTGAGTAGCTTGTTATTTGTGCTCCCATaGATGCCAGTTCTTCTTCTCTGGCATATTCATCCTCTGCGTCTC +
Preference number: 6 (lower is better)
Translates to: CHFHKTLSSLLFVLP*MPVLLLWHIHPLRL
Trigger: GAGACGCAGAGGATGAATATGCCAGAGAAGAAGAACTGGCATCAATGGGAGCACAAATAACAAGCTACTCAAGGTTTTATGAAAGTGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CAA 90 bp TCTCAGCTCGAAGGGAATTGCCACTTTCATAAAACCTTGAGTAGCTaGTTATTTGTGCTCCCATTGATGCCAGTTCTTCTTCTCTGGCAT +
Preference number: 6 (lower is better)
Translates to: SQLEGNCHFHKTLSS*LFVLPLMPVLLLWH
Trigger: ATGCCAGAGAAGAAGAACTGGCATCAATGGGAGCACAAATAACAAGCTACTCAAGGTTTTATGAAAGTGGCAATTCCCTTCGAGCTGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CAA 90 bp TCCCAATCCAAGTCCGAACTATTTCACAGTCGACATTTAATTCAATaGCAACAGCTTCAATCTTCTCTCTACATACAGAGCCCAGGCTGG +
Preference number: 6 (lower is better)
Translates to: SQSKSELFHSRHLIQ*QQLQSSLYIQSPGW
Trigger: CCAGCCTGGGCTCTGTATGTAGAGAGAAGATTGAAGCTGTTGCAATTGAATTAAATGTCGACTGTGAAATAGTTCGGACTTGGATTGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 72 bp ATCATTATTGGCAGAAGTCCAAGAAGATTGCTGGCTTaGAGGGCGGGCAATATTAACCACATTTCTGACTGT +
Preference number: 6 (lower is better)
Translates to: IIIGRSPRRLLA*RAGNINHISDC
Trigger: ACAGTCAGAAATGTGGTTAATATTGCCCGCCCTTCAAGCCAGCAATCTTCTTGGACTTCTGCCAATAATGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS GCA 72 bp GTTTATATGACCTTTGAATCCCAACTGGTTCAATTTTaGAAGGTCGCTGGCACACAGATGGCTTTTGAGGTA +
Preference number: 6 (lower is better)
Translates to: VYMTFESQLVQF*KVAGTQMAFEV
Trigger: TACCTCAAAAGCCATCTGTGTGCCAGCGACCTTGCAAAATTGAACCAGTTGGGATTCAAAGGTCATATAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CCA 72 bp ATGACATCATTATTGGCAGAAGTCCAAGAAGATTGCTaGCTTGAAGGGCGGGCAATATTAACCACATTTCTG +
Preference number: 6 (lower is better)
Translates to: MTSLLAEVQEDC*LEGRAILTTFL
Trigger: CAGAAATGTGGTTAATATTGCCCGCCCTTCAAGCCAGCAATCTTCTTGGACTTCTGCCAATAATGATGTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CAA 72 bp TCTCAGCTCGAAGGGAATTGCCACTTTCATAAAACCTaGAGTAGCTTGTTATTTGTGCTCCCATTGATGCCA +
Preference number: 6 (lower is better)
Translates to: SQLEGNCHFHKT*SSLLFVLPLMP
Trigger: TGGCATCAATGGGAGCACAAATAACAAGCTACTCAAGGTTTTATGAAAGTGGCAATTCCCTTCGAGCTGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CAA 90 bp TCACCATTTGTGAATTTGGCAGGTTTCTTCCTGGTCCAGGCAAATTaGTACTTTGGTTCTCAGCTCGAAGGGAATTGCCACTTTCATAAA +
Preference number: 6 (lower is better)
Translates to: SPFVNLAGFFLVQAN*YFGSQLEGNCHFHK
Trigger: TTTATGAAAGTGGCAATTCCCTTCGAGCTGAGAACCAAAGTACAAATTTGCCTGGACCAGGAAGAAACCTGCCAAATTCACAAATGGTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 72 bp AGTATTACTGTACATAGTACTAGATGCTGTATGCAATaGGGTCCGTGGTGTCAAATGGTAGTCTCTAGTCTG +
Preference number: 6 (lower is better)
Translates to: SITVHSTRCCMQ*GPWCQMVVSSL
Trigger: CAGACTAGAGACTACCATTTGACACCACGGACCTCATTGCATACAGCATCTAGTACTATGTACAGTAATACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS GCA 72 bp ACAATGACATCATTATTGGCAGAAGTCCAAGAAGATTaGTGGCTTGAAGGGCGGGCAATATTAACCACATTT +
Preference number: 6 (lower is better)
Translates to: TMTSLLAEVQED*WLEGRAILTTF
Trigger: AAATGTGGTTAATATTGCCCGCCCTTCAAGCCAGCAATCTTCTTGGACTTCTGCCAATAATGATGTCATTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CAA 72 bp CTGAAGCTTGCACCGGAGAACTTCCATAGCTTTTCTTaGTGTGATTGTACACTGAGTTTCCAGCATTTAGTA +
Preference number: 6 (lower is better)
Translates to: LKLAPENFHSFS*CDCTLSFQHLV
Trigger: TACTAAATGCTGGAAACTCAGTGTACAATCACACAAAGAAAAGCTATGGAAGTTCTCCGGTGCAAGCTTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CAA 90 bp CTGTCATTTCTGAAGCTTGCACCGGAGAACTTCCATAGCTTTTCTTaGTGTGATTGTACACTGAGTTTCCAGCATTTAGTACACTTGTCT +
Preference number: 6 (lower is better)
Translates to: LSFLKLAPENFHSFS*CDCTLSFQHLVHLS
Trigger: AGACAAGTGTACTAAATGCTGGAAACTCAGTGTACAATCACACAAAGAAAAGCTATGGAAGTTCTCCGGTGCAAGCTTCAGAAATGACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CAA 90 bp TACTTTGGTTCTCAGCTCGAAGGGAATTGCCACTTTCATAAAACCTaGAGTAGCTTGTTATTTGTGCTCCCATTGATGCCAGTTCTTCTT +
Preference number: 6 (lower is better)
Translates to: YFGSQLEGNCHFHKT*SSLLFVLPLMPVLL
Trigger: AAGAAGAACTGGCATCAATGGGAGCACAAATAACAAGCTACTCAAGGTTTTATGAAAGTGGCAATTCCCTTCGAGCTGAGAACCAAAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CAA 72 bp GAAGGGAATTGCCACTTTCATAAAACCTTGAGTAGCTaGTTATTTGTGCTCCCATTGATGCCAGTTCTTCTT +
Preference number: 6 (lower is better)
Translates to: EGNCHFHKTLSS*LFVLPLMPVLL
Trigger: AAGAAGAACTGGCATCAATGGGAGCACAAATAACAAGCTACTCAAGGTTTTATGAAAGTGGCAATTCCCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 72 bp AGCACAGAAGCATTCTTACAGTGCGCTACTTGTCTTTaGACAGGAATGTGCAATTGTAATTCAGTGTCATTT +
Preference number: 6 (lower is better)
Translates to: STEAFLQCATCL*TGMCNCNSVSF
Trigger: AAATGACACTGAATTACAATTGCACATTCCTGTTCAAAGACAAGTAGCGCACTGTAAGAATGCTTCTGTGCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS CCA 72 bp ATAATTTCTATTTTCACATTATCTGCAGATACTGCCTaGTGCTCTTCATCCTTATGTGCCCTGGTCTCATTT +
Preference number: 6 (lower is better)
Translates to: IISIFTLSADTA*CSSSLCALVSF
Trigger: AAATGAGACCAGGGCACATAAGGATGAAGAGCACCAGGCAGTATCTGCAGATAATGTGAAAATAGAAATTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS TCA 72 bp TTGATGAGCTTACTGGACTGTATATACCAGTTACAATaGCATCATTATTGGCAGAAGTCCAAGAAGATTGCT +
Preference number: 6 (lower is better)
Translates to: LMSLLDCIYQLQ*HHYWQKSKKIA
Trigger: AGCAATCTTCTTGGACTTCTGCCAATAATGATGTCATTGTAACTGGTATATACAGTCCAGTAAGCTCATCAA
38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9
CDS GCA 72 bp GCAAATTTGTACTTTGGTTCTCAGCTCGAAGGGAATTaGCACTTTCATAAAACCTTGAGTAGCTTGTTATTT +
Preference number: 6 (lower is better)
Translates to: ANLYFGSQLEGN*HFHKTLSSLLF
Trigger: AAATAACAAGCTACTCAAGGTTTTATGAAAGTGGCAATTCCCTTCGAGCTGAGAACCAAAGTACAAATTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038472.7
ENSMUST00000113422.9