Pregenerated sensors for H60B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075297Ensembl transcript IDs: ENSMUST00000105522.9, ENSMUST00000131558.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | CCGAGATTCCAACAGAAATATGTTTGCTTTCTTTGCTaGAGATGCACAGGCAATGTTCAAGAATCTCCCCAG | + |
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Preference number: 3 (lower is better) Translates to: PRFQQKYVCFLC*RCTGNVQESPQ Trigger: CTGGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGTTGGAATCTCGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR TCA 90 bp | GCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCAGCACAGCTCAAGGCATCATTACCTaGTTGCTGGTTCCTCATCCC | + |
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Preference number: 4 (lower is better) Translates to: AFFAEDAQAMFKNLPSTAQGIIT*LLVPHP Trigger: GGGATGAGGAACCAGCAATCAGGTAATGATGCCTTG...AGCTGTGCTGGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR TCA 90 bp | ATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCAGCAGAGTCTGTACCAGTTaGCAGTGTGGCCCCCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: MFAFFAEDAQAMFKNLPSRVCTS*QCGPQK Trigger: TTTCTGGGGGCCACACTGTCAACTGGTACAGACTCT...GCTGGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR TCA 90 bp | TGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCAGCAGCTGTTCATCAGTGTTaGTGGCCCAGAATCCACCAA | + |
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Preference number: 4 (lower is better) Translates to: CLLSLLKMHRQCSRISPAAVHQC*WPRIHQ Trigger: TTGGTGGATTCTGGGCCATCAACACTGATGAACAGC...TGCTGGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR TCA 90 bp | ATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCAGCGCTGTTCATCAGTGTTaGTGGCCCAGAATCCACCAA | + |
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Preference number: 4 (lower is better) Translates to: MFAFFAEDAQAMFKNLPSAVHQC*WPRIHQ Trigger: TTGGTGGATTCTGGGCCATCAACACTGATGAACAGC...GCTGGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CCA 90 bp | TTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCAGCACATACCAGTTGACAGTGTaGCCCCCAGAAAATTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: FAFFAEDAQAMFKNLPSTYQLTV*PPENSA Trigger: TGCTGAATTTTCTGGGGGCCACACTGTCAACTGGTA...TGTGCTGGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR TCA 90 bp | AATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCGTTCCTCATCCCTTCTaGAAGCTCTCTCAGGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: NMFAFFAEDAQAMFKNLPVPHPF*KLSQAL Trigger: CAAAGCCTGAGAGAGCTTTCAGAAGGGATGAGGAAC...GGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR TCA 90 bp | TGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCAGCATTCTCTAAAGTGTGGTaGCAATTTGTTGAGGCAGCG | + |
|
Preference number: 4 (lower is better) Translates to: CLLSLLKMHRQCSRISPAFSKVW*QFVEAA Trigger: CGCTGCCTCAACAAATTGTCACCACACTTTAGAGAA...TGCTGGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR GCA 90 bp | TGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCAGCAGCATCATTACCTGATTaGTGGTTCCTCATCCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: CLLSLLKMHRQCSRISPAASLPD*WFLIPS Trigger: AGAAGGGATGAGGAACCAGCAATCAGGTAATGATGC...TGCTGGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR GCA 90 bp | ATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCAGCGCATCATTACCTGATTaGTGGTTCCTCATCCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: MFAFFAEDAQAMFKNLPSASLPD*WFLIPS Trigger: AGAAGGGATGAGGAACCAGCAATCAGGTAATGATGC...GCTGGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR TCA 90 bp | ACAGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCAGAGTCTGTACCAGTTaGCAGTGTGGCCCCCAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: TEICLLSLLKMHRQCSRIRVCTS*QCGPQK Trigger: TTTCTGGGGGCCACACTGTCAACTGGTACAGACTCT...GATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR TCA 90 bp | TTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCAGCACACCCAGAATCCACCAATaGATTCTCCTTGATTATACT | + |
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Preference number: 4 (lower is better) Translates to: FAFFAEDAQAMFKNLPSTPRIHQ*ILLDYT Trigger: AGTATAATCAAGGAGAATTCATTGGTGGATTCTGGG...TGTGCTGGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR TCA 90 bp | CGAGATTCCAACAGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGCTGCTGTTATCAGAATaGCTCTCTCTCCAGGTCATA | + |
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Preference number: 4 (lower is better) Translates to: RDSNRNMFAFFAEDAQAMLLLSE*LSLQVI Trigger: TATGACCTGGAGAGAGAGTCATTCTGATAACAGCAG...CATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGTTGGAATCTCG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR TCA 90 bp | TTCCGAGATTCCAACAGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCATTCTCTAAAGTGTGGTaGCAATTTGTTGAGGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: FRDSNRNMFAFFAEDAQAFSKVW*QFVEAA Trigger: CGCTGCCTCAACAAATTGTCACCACACTTTAGAGAA...TGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGTTGGAATCTCGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CCA 90 bp | GAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCTACCAGTTGACAGTGTaGCCCCCAGAAAATTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: EICLLSLLKMHRQCSRISYQLTV*PPENSA Trigger: TGCTGAATTTTCTGGGGGCCACACTGTCAACTGGTA...GGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CCA 90 bp | AATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCTCTTCCAGTGCTCCATaGCACTGCTGTTATCAGAAT | + |
|
Preference number: 4 (lower is better) Translates to: NMFAFFAEDAQAMFKNLPSSSAP*HCCYQN Trigger: ATTCTGATAACAGCAGTGCCATGGAGCACTGGAAGA...GGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR TCA 90 bp | AACAGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCAAGGCATCATTACCTaGTTGCTGGTTCCTCATCCC | + |
|
Preference number: 4 (lower is better) Translates to: NRNMFAFFAEDAQAMFKNQGIIT*LLVPHP Trigger: GGGATGAGGAACCAGCAATCAGGTAATGATGCCTTG...ATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR GCA 90 bp | TTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCAGCACAGTGGATAAAAGTAGATaGTATGCTGTTCATCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: FAFFAEDAQAMFKNLPSTVDKSR*YAVHQC Trigger: ACACTGATGAACAGCATAGCATCTACTTTTATCCAC...TGTGCTGGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR TCA 90 bp | AGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCTGCTGTTATCAGAATaGCTCTCTCTCCAGGTCATA | + |
|
Preference number: 4 (lower is better) Translates to: RNMFAFFAEDAQAMFKNLLLLSE*LSLQVI Trigger: TATGACCTGGAGAGAGAGTCATTCTGATAACAGCAG...GAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CCA 90 bp | TTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCAGCACACCATGTAGAGTACGATaGTTGAAAGTTAATTCACAA | + |
|
Preference number: 4 (lower is better) Translates to: FAFFAEDAQAMFKNLPSTPCRVR*LKVNSQ Trigger: TTGTGAATTAACTTTCAACCATCGTACTCTACATGG...TGTGCTGGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CCA 90 bp | TGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCAGCACCAGGTCATATTAAGTaGATAAAAGTAGATGCTATG | + |
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Preference number: 4 (lower is better) Translates to: CLLSLLKMHRQCSRISPAPGHIK*IKVDAM Trigger: CATAGCATCTACTTTTATCCACTTAATATGACCTGG...TGCTGGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CCA 90 bp | AACAGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATTCTTCCAGTGCTCCATaGCACTGCTGTTATCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: NRNMFAFFAEDAQAMFKNSSSAP*HCCYQN Trigger: ATTCTGATAACAGCAGTGCCATGGAGCACTGGAAGA...ATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR TCA 90 bp | ATTCCAACAGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCACCCAGAATCCACCAATaGATTCTCCTTGATTATACT | + |
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Preference number: 4 (lower is better) Translates to: IPTEICLLSLLKMHRQCSPRIHQ*ILLDYT Trigger: AGTATAATCAAGGAGAATTCATTGGTGGATTCTGGG...TGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGTTGGAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CCA 90 bp | CGAGATTCCAACAGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGCCATGTAGAGTACGATaGTTGAAAGTTAATTCACAA | + |
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Preference number: 4 (lower is better) Translates to: RDSNRNMFAFFAEDAQAMPCRVR*LKVNSQ Trigger: TTGTGAATTAACTTTCAACCATCGTACTCTACATGG...CATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGTTGGAATCTCG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CCA 90 bp | AATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCTATTTGTATTCTGGGTaGTATCCAGCACCTTTATTT | + |
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Preference number: 4 (lower is better) Translates to: NMFAFFAEDAQAMFKNLPYLYSG*YPAPLF Trigger: AAATAAAGGTGCTGGATACCACCCAGAATACAAATA...GGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CCA 90 bp | TTCCGAGATTCCAACAGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCATATTTGTATTCTGGGTaGTATCCAGCACCTTTATTT | + |
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Preference number: 4 (lower is better) Translates to: FRDSNRNMFAFFAEDAQAYLYSG*YPAPLF Trigger: AAATAAAGGTGCTGGATACCACCCAGAATACAAATA...TGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGTTGGAATCTCGGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR GCA 90 bp | AGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCGTGGATAAAAGTAGATaGTATGCTGTTCATCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: RNMFAFFAEDAQAMFKNLVDKSR*YAVHQC Trigger: ACACTGATGAACAGCATAGCATCTACTTTTATCCAC...GAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CAA 90 bp | TTCCGAGATTCCAACAGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAGAGAGTCTGTACCAGTaGACAGTGTGGCCCCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: FRDSNRNMFAFFAEDAQAESLYQ*TVWPPE Trigger: TTCTGGGGGCCACACTGTCAACTGGTACAGACTCTC...TGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGTTGGAATCTCGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CAA 90 bp | ATTCCAACAGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAGAGAGTCTGTACCAGTaGACAGTGTGGCCCCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: IPTEICLLSLLKMHRQCSESLYQ*TVWPPE Trigger: TTCTGGGGGCCACACTGTCAACTGGTACAGACTCTC...TGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGTTGGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CAA 90 bp | ATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCCCATGCTGTTCATCAGTGTaGATGGCCCAGAATCCACCA | + |
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Preference number: 5 (lower is better) Translates to: ICLLSLLKMHRQCSRISPCCSSV*MAQNPP Trigger: TGGTGGATTCTGGGCCATCAACACTGATGAACAGCA...TGGGGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS CCA 90 bp | GGCACTGCTGTTATCAGAATGACTCTCTCTCCAGGTCATATTAAGTaGATAAAAGTAGATGCTATGCTGTTCATCAGTGTTGATGGCCCA | + |
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Preference number: 5 (lower is better) Translates to: GTAVIRMTLSPGHIK*IKVDAMLFISVDGP Trigger: TGGGCCATCAACACTGATGAACAGCATAGCATCTACTTTTATCCACTTAATATGACCTGGAGAGAGAGTCATTCTGATAACAGCAGTGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CAA 90 bp | TCCGAGATTCCAACAGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAAAAGCTCTCTCAGGCTTaGGGACAAATCAGCACACAT | + |
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Preference number: 5 (lower is better) Translates to: SEIPTEICLLSLLKMHRQKLSQA*GQISTH Trigger: ATGTGTGCTGATTTGTCCCAAAGCCTGAGAGAGCTT...TTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGTTGGAATCTCGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CAA 90 bp | AGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCTGCTGTTCATCAGTGTaGATGGCCCAGAATCCACCA | + |
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Preference number: 5 (lower is better) Translates to: RNMFAFFAEDAQAMFKNLCCSSV*MAQNPP Trigger: TGGTGGATTCTGGGCCATCAACACTGATGAACAGCA...GAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CAA 90 bp | AACAGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATAAGCTCTCTCAGGCTTaGGGACAAATCAGCACACAT | + |
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Preference number: 5 (lower is better) Translates to: NRNMFAFFAEDAQAMFKNKLSQA*GQISTH Trigger: ATGTGTGCTGATTTGTCCCAAAGCCTGAGAGAGCTT...ATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CAA 90 bp | GAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATCTCCGGTGTCAGAATTATGTaGGGAGTTATTCACTGTAGG | + |
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Preference number: 5 (lower is better) Translates to: EICLLSLLKMHRQCSRISGVRIM*GVIHCR Trigger: CCTACAGTGAATAACTCCCAACATAATTCTGACACC...GGAGATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CAA 90 bp | AACAGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCAAGAATGGTGTCAGAATTATGTaGGGAGTTATTCACTGTAGG | + |
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Preference number: 5 (lower is better) Translates to: NRNMFAFFAEDAQAMFKNGVRIM*GVIHCR Trigger: CCTACAGTGAATAACTCCCAACATAATTCTGACACC...ATTCTTGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS-3UTR CAA 90 bp | ATTCCAACAGAAATATGTTTGCTTTCTTTGCTGAAGATGCACAGGCAATGTTCATTGATTATACTGAGATaGTGTTGTGACATTCAAGGC | + |
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Preference number: 5 (lower is better) Translates to: IPTEICLLSLLKMHRQCSLIILR*CCDIQG Trigger: GCCTTGAATGTCACAACACAATCTCAGTATAATCAA...TGAACATTGCCTGTGCATCTTCAGCAAAGAAAGCAAACATATTTCTGTTGGAAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS CCA 72 bp | TGGTTCCTCATCCCTTCTGAAAGCTCTCTCAGGCTTTaGGACAAATCAGCACACATCTCTGTAGCATTTCCC | + |
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Preference number: 6 (lower is better) Translates to: WFLIPSESSLRL*DKSAHISVAFP Trigger: GGGAAATGCTACAGAGATGTGTGCTGATTTGTCCCAAAGCCTGAGAGAGCTTTCAGAAGGGATGAGGAACCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS GCA 72 bp | GATTGTGTTGTGACATTCAAGGCATCATTACCTGATTaGTGGTTCCTCATCCCTTCTGAAAGCTCTCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: DCVVTFKASLPD*WFLIPSESSLR Trigger: CCTGAGAGAGCTTTCAGAAGGGATGAGGAACCAGCAATCAGGTAATGATGCCTTGAATGTCACAACACAATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS GCA 72 bp | TCTCTAGGTTCTTGTTCTTCCAGTGCTCCATGGCACTaGTGTTATCAGAATGACTCTCTCTCCAGGTCATAT | + |
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Preference number: 6 (lower is better) Translates to: SLGSCSSSAPWH*CYQNDSLSRSY Trigger: ATATGACCTGGAGAGAGAGTCATTCTGATAACAGCAGTGCCATGGAGCACTGGAAGAACAAGAACCTAGAGA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS CAA 72 bp | ATGATGAGGACATTCCTGATATCTTTCTCTAGGTTCTaGTTCTTCCAGTGCTCCATGGCACTGCTGTTATCA | + |
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Preference number: 6 (lower is better) Translates to: MMRTFLISFSRF*FFQCSMALLLS Trigger: TGATAACAGCAGTGCCATGGAGCACTGGAAGAACAAGAACCTAGAGAAAGATATCAGGAATGTCCTCATCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS CCA 72 bp | TTTCCATTCACTGAGCACTGTCCATGTAGAGTACGATaGTTGAAAGTTAATTCACAACTTAGAGAGTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: FPFTEHCPCRVR*LKVNSQLRESV Trigger: TACAGACTCTCTAAGTTGTGAATTAACTTTCAACCATCGTACTCTACATGGACAGTGCTCAGTGAATGGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS CCA 72 bp | GTTATCAGAATGACTCTCTCTCCAGGTCATATTAAGTaGATAAAAGTAGATGCTATGCTGTTCATCAGTGTT | + |
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Preference number: 6 (lower is better) Translates to: VIRMTLSPGHIK*IKVDAMLFISV Trigger: AACACTGATGAACAGCATAGCATCTACTTTTATCCACTTAATATGACCTGGAGAGAGAGTCATTCTGATAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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| CDS CAA 90 bp | ACCTTTATTTTTGATTTTGGCATTTCTCTAAAGTGTGGTGACAATTaGTTGAGGCAGCGACTGAAATATATGATGAGGACATTCCTGATA | + |
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Preference number: 6 (lower is better) Translates to: TFIFDFGISLKCGDN*LRQRLKYMMRTFLI Trigger: TATCAGGAATGTCCTCATCATATATTTCAGTCGCTGCCTCAACAAATTGTCACCACACTTTAGAGAAATGCCAAAATCAAAAATAAAGGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105522.9 ENSMUST00000131558.2 |
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