Pregenerated sensors for H4C3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060678

Ensembl transcript IDs: ENSMUST00000102967.3

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	TCTAAAACAGTTCGTTCAGTATTAACTTCTGACAGTTCAAAATTATaGGCTTGTTATATTACCCAGTTAAACCTACAGGGTATATTCGGC	+
Preference number: 1 (lower is better) Translates to: SKTVRSVLTSDSSKL*ACYITQLNLQGIFG Trigger: GCCGAATATACCCTGTAGGTTTAACTGGGTAATATAACAAGCCCATAATTTTGAACTGTCAGAAGTTAATACTGAACGAACTGTTTTAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102967.3
3UTR-3UTR TCA 90 bp	ACTTCTGACAGTTCAAAATTATGGGCTTGTTATATTACCCAGTTAAACCTACAGAAAAGGGCCTTTTGTTaGCAGTGGAAATCGTTTGTT	+
Preference number: 2 (lower is better) Translates to: TSDSSKLWACYITQLNLQKRAFC*QWKSFV Trigger: AACAAACGATTTCCACTGTCAACAAAAGGCCCTTTT...CTGTAGGTTTAACTGGGTAATATAACAAGCCCATAATTTTGAACTGTCAGAAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102967.3
3UTR TCA 72 bp	TTGCCTTGCTTAGATACAATGGTTCCTGCTCTCTCCTaGGCTTCTAGATGGCTCCAGAAGGGAATAAGCTCT	+
Preference number: 3 (lower is better) Translates to: LPCLDTMVPALS*ASRWLQKGISS Trigger: AGAGCTTATTCCCTTCTGGAGCCATCTAGAAGCTCAGGAGAGAGCAGGAACCATTGTATCTAAGCAAGGCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102967.3
3UTR-3UTR CAA 90 bp	CTAGCAGGCTCGATTAAAGCTTCGGTAAGTGAACAACTCCTAGGAATTTGTGGGGAAAAGGGCCTTTTGTaGACAGTGGAAATCGTTTGT	+
Preference number: 3 (lower is better) Translates to: LAGSIKASVSEQLLGICGEKGLL*TVEIVC Trigger: ACAAACGATTTCCACTGTCAACAAAAGGCCCTTTTC...CCCACAAATTCCTAGGAGTTGTTCACTTACCGAAGCTTTAATCGAGCCTGCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102967.3
3UTR-3UTR CAA 90 bp	ACTTCTGACAGTTCAAAATTATGGGCTTGTTATATTACCCAGTTAAACCTACAGACAACTCCTAGGAATTaGTGGGTGGCCCTGAAAAGG	+
Preference number: 3 (lower is better) Translates to: TSDSSKLWACYITQLNLQTTPRN*WVALKR Trigger: CCTTTTCAGGGCCACCCACAAATTCCTAGGAGTTGT...CTGTAGGTTTAACTGGGTAATATAACAAGCCCATAATTTTGAACTGTCAGAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102967.3
3UTR-3UTR CAA 90 bp	AAAATTATGGGCTTGTTATATTACCCAGTTAAACCTACAGGGTATATTCGGCTGCCTGAAAAGGGCCTTTaGTTGACAGTGGAAATCGTT	+
Preference number: 3 (lower is better) Translates to: KIMGLLYYPVKPTGYIRLPEKGL*LTVEIV Trigger: AACGATTTCCACTGTCAACAAAAGGCCCTTTTCAGG...CAGCCGAATATACCCTGTAGGTTTAACTGGGTAATATAACAAGCCCATAATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102967.3
3UTR CAA 72 bp	CAGCTAAGCGTCTTCAGTTTCTGTAGTAATCAGCCTTaGCCTTGCTTAGATACAATGGTTCCTGCTCTCTCC	+
Preference number: 4 (lower is better) Translates to: QLSVFSFCSNQP*PCLDTMVPALS Trigger: GGAGAGAGCAGGAACCATTGTATCTAAGCAAGGCAAAGGCTGATTACTACAGAAACTGAAGACGCTTAGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102967.3
CDS-3UTR CCA 90 bp	ACTTCTGACAGTTCAAAATTATGGGCTTGTTATATTACCCAGTTAAACCTACAGGGCTTGGTAATGCCCTaGATGTTATCACGGAGAACC	+
Preference number: 4 (lower is better) Translates to: TSDSSKLWACYITQLNLQGLVMP*MLSRRT Trigger: GGTTCTCCGTGATAACATCCAGGGCATTACCAAGCC...CTGTAGGTTTAACTGGGTAATATAACAAGCCCATAATTTTGAACTGTCAGAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102967.3