Pregenerated sensors for H4C11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067455Ensembl transcript IDs: ENSMUST00000087714.6
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TCAGAATTTTATTGCATCCGAGACAGCATAGTTTATAAAGCCAGATCAACCTCAAGTGAACTCACCACTTaGCAGGACTATTCAGCTTTC | + |
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Preference number: 2 (lower is better) Translates to: SEFYCIRDSIVYKARSTSSELTT*QDYSAF Trigger: GAAAGCTGAATAGTCCTGTCAAGTGGTGAGTTCACT...TGAGGTTGATCTGGCTTTATAAACTATGCTGTCTCGGATGCAATAAAATTCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087714.6 |
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| 3UTR-3UTR TCA 90 bp | GACAGCATAGTTTATAAAGCCAGATCAACCTCATTCTACACAACTGAATGTACACATACATGTTCGTTCTaGTTGGACAACCTGTTACGA | + |
|
Preference number: 2 (lower is better) Translates to: DSIVYKARSTSFYTTECTHTCSF*LDNLLR Trigger: TCGTAACAGGTTGTCCAATCAGAACGAACATGTATG...TGTACATTCAGTTGTGTAGAATGAGGTTGATCTGGCTTTATAAACTATGCTGTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087714.6 |
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| 3UTR-3UTR CCA 90 bp | GAATTTTATTGCATCCGAGACAGCATAGTTTATAAAGCCAGATCAACCTCATTCAGCATCCTTAAGAGGTaGAAGCAGAAAAATGGGCAA | + |
|
Preference number: 2 (lower is better) Translates to: EFYCIRDSIVYKARSTSFSILKR*KQKNGQ Trigger: TTGCCCATTTTTCTGCTTCCACCTCTTAAGGATGCT...GAATGAGGTTGATCTGGCTTTATAAACTATGCTGTCTCGGATGCAATAAAATTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087714.6 |
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| 3UTR CCA 72 bp | CGCATGCAAATTAAGCACATACATGTTCGTTCTGATTaGACAACCTGTTACGAGCCGTTTTCACTCCAGTTC | + |
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Preference number: 3 (lower is better) Translates to: RMQIKHIHVRSD*TTCYEPFSLQF Trigger: GAACTGGAGTGAAAACGGCTCGTAACAGGTTGTCCAATCAGAACGAACATGTATGTGCTTAATTTGCATGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087714.6 |
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