Pregenerated sensors for H3C6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069273

Ensembl transcript IDs: ENSMUST00000105107.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	GCCTTGTTTCCAAAAACAGGCAGCTCAGACTGCTTCGTCGGGTGGTaGTCATCATTGTCAAGAAAGGCTATATATAATAGGAAACCCTGG	+
Preference number: 1 (lower is better) Translates to: ALFPKTGSSDCFVGW*SSLSRKAIYNRKPW Trigger: CCAGGGTTTCCTATTATATATAGCCTTTCTTGACAATGATGAGCACCACCCGACGAAGCAGTCTGAGCTGCCTGTTTTTGGAAACAAGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105107.2
3UTR CCA 90 bp	AAAGCCTTGTTTCCAAAAACAGGCAGCTCAGACTGCTTCGTCGGGTaGTGCTCATCATTGTCAAGAAAGGCTATATATAATAGGAAACCC	+
Preference number: 1 (lower is better) Translates to: KALFPKTGSSDCFVG*CSSLSRKAIYNRKP Trigger: GGGTTTCCTATTATATATAGCCTTTCTTGACAATGATGAGCACCACCCGACGAAGCAGTCTGAGCTGCCTGTTTTTGGAAACAAGGCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105107.2
3UTR GCA 90 bp	AATGATATCCTGAAAGCCTTGTTTCCAAAAACAGGCAGCTCAGACTaGTTCGTCGGGTGGTGCTCATCATTGTCAAGAAAGGCTATATAT	+
Preference number: 1 (lower is better) Translates to: NDILKALFPKTGSSD*FVGWCSSLSRKAIY Trigger: ATATATAGCCTTTCTTGACAATGATGAGCACCACCCGACGAAGCAGTCTGAGCTGCCTGTTTTTGGAAACAAGGCTTTCAGGATATCATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105107.2
3UTR CCA 72 bp	TTTCCAAAAACAGGCAGCTCAGACTGCTTCGTCGGGTaGTGCTCATCATTGTCAAGAAAGGCTATATATAAT	+
Preference number: 3 (lower is better) Translates to: FPKTGSSDCFVG*CSSLSRKAIYN Trigger: ATTATATATAGCCTTTCTTGACAATGATGAGCACCACCCGACGAAGCAGTCTGAGCTGCCTGTTTTTGGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105107.2
3UTR CAA 72 bp	GGCAGCTCAGACTGCTTCGTCGGGTGGTGCTCATCATaGTCAAGAAAGGCTATATATAATAGGAAACCCTGG	+
Preference number: 4 (lower is better) Translates to: GSSDCFVGWCSS*SRKAIYNRKPW Trigger: CCAGGGTTTCCTATTATATATAGCCTTTCTTGACAATGATGAGCACCACCCGACGAAGCAGTCTGAGCTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105107.2

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