Pregenerated sensors for H2AX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049932Ensembl transcript IDs: ENSMUST00000052686.4
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AACCGAGAACGGCGAAGCGATGTCACGAGCTCCGGGATGGGCAGGTaGCGCGGCGCCCGCGTCCTCCGTGGCAGAACCGGAGGCCGTGCG | + |
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Preference number: 1 (lower is better) Translates to: NRERRSDVTSSGMGR*RGARVLRGRTGGRA Trigger: CGCACGGCCTCCGGTTCTGCCACGGAGGACGCGGGCGCCGCGGCACCTGCCCATCCCGGAGCTCGTGACATCGCTTCGCCGTTCTCGGTT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| 3UTR GCA 90 bp | GTAGTTGAGTCGCTGGGGAAGAGGGGATGGATGGCTAGGCCCGGCTaGCAGTCGCCTGCGGCAGGTATAGAACTCTTGTCCACAGGCCGG | + |
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Preference number: 1 (lower is better) Translates to: VVESLGKRGWMARPG*QSPAAGIELLSTGR Trigger: CCGGCCTGTGGACAAGAGTTCTATACCTGCCGCAGGCGACTGGCAGCCGGGCCTAGCCATCCATCCCCTCTTCCCCAGCGACTCAACTAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| 3UTR CCA 90 bp | CAGTCCAGACAGGGATTCACCGGCTTGTGCTGGTATCTAGGTGTTTaGGTTGTAGTTGAGTCGCTGGGGAAGAGGGGATGGATGGCTAGG | + |
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Preference number: 1 (lower is better) Translates to: QSRQGFTGLCWYLGV*VVVESLGKRGWMAR Trigger: CCTAGCCATCCATCCCCTCTTCCCCAGCGACTCAACTACAACCCAAACACCTAGATACCAGCACAAGCCGGTGAATCCCTGTCTGGACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| 3UTR CCA 90 bp | CAGAAGCCAGAGGCTCAGTCCAGACAGGGATTCACCGGCTTGTGCTaGTATCTAGGTGTTTGGGTTGTAGTTGAGTCGCTGGGGAAGAGG | + |
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Preference number: 1 (lower is better) Translates to: QKPEAQSRQGFTGLC*YLGVWVVVESLGKR Trigger: CCTCTTCCCCAGCGACTCAACTACAACCCAAACACCTAGATACCAGCACAAGCCGGTGAATCCCTGTCTGGACTGAGCCTCTGGCTTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| 3UTR GCA 90 bp | GTTCAGAAGCCAGAGGCTCAGTCCAGACAGGGATTCACCGGCTTGTaGTGGTATCTAGGTGTTTGGGTTGTAGTTGAGTCGCTGGGGAAG | + |
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Preference number: 1 (lower is better) Translates to: VQKPEAQSRQGFTGL*WYLGVWVVVESLGK Trigger: CTTCCCCAGCGACTCAACTACAACCCAAACACCTAGATACCAGCACAAGCCGGTGAATCCCTGTCTGGACTGAGCCTCTGGCTTCTGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| 3UTR CCA 90 bp | CGGGAGGTATTCCTAGAGAAACTGGGTTCACATTACAACCATTTTTaGCCCCGCCACACCACACTGGCCTACGAATGGCGACAGGGTCAA | + |
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Preference number: 1 (lower is better) Translates to: REVFLEKLGSHYNHF*PRHTTLAYEWRQGQ Trigger: TTGACCCTGTCGCCATTCGTAGGCCAGTGTGGTGTGGCGGGGCCAAAAATGGTTGTAATGTGAACCCAGTTTCTCTAGGAATACCTCCCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| 3UTR-3UTR CCA 90 bp | AGCGAGGGGCCGAGACTCCGGGAAGGCGCCGCAGCCTCTCCGCACGGAGCCGTCGCCTTTGTGGAGGTGTaGGGAGGGCTGGGCGGCCTC | + |
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Preference number: 2 (lower is better) Translates to: SEGPRLREGAAASPHGAVAFVEV*GGLGGL Trigger: GAGGCCGCCCAGCCCTCCCCACACCTCCACAAAGGC...GACGGCTCCGTGCGGAGAGGCTGCGGCGCCTTCCCGGAGTCTCGGCCCCTCGCT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| 3UTR-3UTR CCA 90 bp | CGGCGCCCGCGTCCTCCGTGGCAGAACCGGAGGCCGTGCGGGGTAAGGGGAAGACGCCGCAGCCCGAAGTaGCTCAGCTCTTTCTGTGAG | + |
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Preference number: 2 (lower is better) Translates to: RRPRPPWQNRRPCGVRGRRRSPK*LSSFCE Trigger: CTCACAGAAAGAGCTGAGCCACTTCGGGCTGCGGCG...TCTTCCCCTTACCCCGCACGGCCTCCGGTTCTGCCACGGAGGACGCGGGCGCCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| 3UTR-3UTR TCA 90 bp | AAGCAAAGACGCCGGGGCTGTAGCTGCGGAGGGACTAACCTTCAAGCCCACCGCGCTCAGCTCTTTCTGTaGGGGAGGTGGTGGCCCTTA | + |
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Preference number: 2 (lower is better) Translates to: KQRRRGCSCGGTNLQAHRAQLFL*GRWWPL Trigger: TAAGGGCCACCACCTCCCTCACAGAAAGAGCTGAGC...GCGGTGGGCTTGAAGGTTAGTCCCTCCGCAGCTACAGCCCCGGCGTCTTTGCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| 3UTR GCA 72 bp | AGCACCAAGCTGAAGCAAAGACGCCGGGGCTGTAGCTaGGGAGGGACTAACCTTCAAGCCCACCGCGGCCGG | + |
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Preference number: 3 (lower is better) Translates to: STKLKQRRRGCS*GGTNLQAHRGR Trigger: CCGGCCGCGGTGGGCTTGAAGGTTAGTCCCTCCGCAGCTACAGCCCCGGCGTCTTTGCTTCAGCTTGGTGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| 3UTR GCA 72 bp | TCGCTGGGGAAGAGGGGATGGATGGCTAGGCCCGGCTaGCAGTCGCCTGCGGCAGGTATAGAACTCTTGTCC | + |
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Preference number: 3 (lower is better) Translates to: SLGKRGWMARPG*QSPAAGIELLS Trigger: GGACAAGAGTTCTATACCTGCCGCAGGCGACTGGCAGCCGGGCCTAGCCATCCATCCCCTCTTCCCCAGCGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| 3UTR CCA 72 bp | CAGGGATTCACCGGCTTGTGCTGGTATCTAGGTGTTTaGGTTGTAGTTGAGTCGCTGGGGAAGAGGGGATGG | + |
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Preference number: 3 (lower is better) Translates to: QGFTGLCWYLGV*VVVESLGKRGW Trigger: CCATCCCCTCTTCCCCAGCGACTCAACTACAACCCAAACACCTAGATACCAGCACAAGCCGGTGAATCCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| 3UTR CCA 72 bp | GAGGCTCAGTCCAGACAGGGATTCACCGGCTTGTGCTaGTATCTAGGTGTTTGGGTTGTAGTTGAGTCGCTG | + |
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Preference number: 3 (lower is better) Translates to: EAQSRQGFTGLC*YLGVWVVVESL Trigger: CAGCGACTCAACTACAACCCAAACACCTAGATACCAGCACAAGCCGGTGAATCCCTGTCTGGACTGAGCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| CDS-3UTR GCA 90 bp | CCCGCGTCCTCCGTGGCAGAACCGGAGGCCGTGCGGGGTAAGGGGAAGAGTGGCCCTTGGCGCGGGCCTTaGCGCCGGTCTTGCCGCGTC | + |
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Preference number: 4 (lower is better) Translates to: PASSVAEPEAVRGKGKSGPWRGP*RRSCRV Trigger: GACGCGGCAAGACCGGCGGCAAGGCCCGCGCCAAGG...GCCACTCTTCCCCTTACCCCGCACGGCCTCCGGTTCTGCCACGGAGGACGCGGG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| CDS-3UTR CCA 90 bp | GGGCCGAGACTCCGGGAAGGCGCCGCAGCCTCTCCGCACGGAGCCGTCGTCCACCCTTGGGCCCCACGGTaGCGCTGCTCTTCTTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: GPRLREGAAASPHGAVVHPWAPR*RCSSWA Trigger: TGCCCAAGAAGAGCAGCGCCACCGTGGGGCCCAAGG...GTGGACGACGGCTCCGTGCGGAGAGGCTGCGGCGCCTTCCCGGAGTCTCGGCCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| CDS-3UTR TCA 90 bp | GGCGACAGGGTCAACTGGTATGAGGCCAGCAACGGTGACACCGAAGGAAACAATCGGCCTACAGGGAACTaGAGGCCGGCGCGTGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: GDRVNWYEASNGDTEGNNRPTGN*RPAREE Trigger: CTCTTCACGCGCCGGCCTTCAGTTCCCTGTAGGCCG...ATTGTTTCCTTCGGTGTCACCGTTGCTGGCCTCATACCAGTTGACCCTGTCGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| CDS CAA 72 bp | GAGGCCTGCGAGGCCTTCTTGCCGACCGCCGGCGCCTaGGGCCCCACGGTGGCGCTGCTCTTCTTGGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: EACEAFLPTAGA*GPTVALLFLGS Trigger: GCTGCCCAAGAAGAGCAGCGCCACCGTGGGGCCCAAGGCGCCGGCGGTCGGCAAGAAGGCCTCGCAGGCCTC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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| CDS CCA 72 bp | AGGCCTGCGAGGCCTTCTTGCCGACCGCCGGCGCCTTaGGCCCCACGGTGGCGCTGCTCTTCTTGGGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: RPARPSCRPPAP*APRWRCSSWAA Trigger: TGCTGCCCAAGAAGAGCAGCGCCACCGTGGGGCCCAAGGCGCCGGCGGTCGGCAAGAAGGCCTCGCAGGCCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052686.4 |
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