Pregenerated sensors for H2-DMB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079547Ensembl transcript IDs: ENSMUST00000114232.4
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGAGGCCTTGAACCCCCACCTCATTTCAGCTCACCTCAGCTCCCCCACCTGGGATATGACACAAGAAAGTaGGGTGTCCTGAAGATGTTG | + |
|
Preference number: 2 (lower is better) Translates to: GGLEPPPHFSSPQLPHLGYDTRK*GVLKML Trigger: CAACATCTTCAGGACACCCCACTTTCTTGTGTCATA...TCCCAGGTGGGGGAGCTGAGGTGAGCTGAAATGAGGTGGGGGTTCAAGGCCTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR CCA 90 bp | GGAGGCCTTGAACCCCCACCTCATTTCAGCTCACCTCAGCTCCCCCACCTGGGATCCAGTCCCCTCGGATaGGCTCAGAGGTCCCGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: GGLEPPPHFSSPQLPHLGSSPLG*AQRSRC Trigger: ACAGCGGGACCTCTGAGCCCATCCGAGGGGACTGGA...TCCCAGGTGGGGGAGCTGAGGTGAGCTGAAATGAGGTGGGGGTTCAAGGCCTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR TCA 90 bp | CTCTCAGGAGGCCTTGAACCCCCACCTCATTTCAGCTCACCTCAGCTCCCCCACCCATACAGTCCAGACTaGGGACCAGCAGCAGCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: LSGGLEPPPHFSSPQLPHPYSPD*GPAAAA Trigger: GGCTGCTGCTGCTGGTCCTCAGTCTGGACTGTATGG...GTGGGGGAGCTGAGGTGAGCTGAAATGAGGTGGGGGTTCAAGGCCTCCTGAGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR GCA 90 bp | CTCTCAGGAGGCCTTGAACCCCCACCTCATTTCAGCTCACCTCAGCTCCCCCACCAGGCCCAGGGTGGCTaGAGACACAGAGACCTTCAC | + |
|
Preference number: 4 (lower is better) Translates to: LSGGLEPPPHFSSPQLPHQAQGG*RHRDLH Trigger: GTGAAGGTCTCTGTGTCTGCAGCCACCCTGGGCCTG...GTGGGGGAGCTGAGGTGAGCTGAAATGAGGTGGGGGTTCAAGGCCTCCTGAGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR CCA 90 bp | CTCTCAGGAGGCCTTGAACCCCCACCTCATTTCAGCTCACCTCAGCTCCCCCACGCATTCCAGAAGGGCTaGGTGTGGGAGGCACAGTCC | + |
|
Preference number: 4 (lower is better) Translates to: LSGGLEPPPHFSSPQLPHAFQKG*VWEAQS Trigger: GGACTGTGCCTCCCACACCCAGCCCTTCTGGAATGC...GTGGGGGAGCTGAGGTGAGCTGAAATGAGGTGGGGGTTCAAGGCCTCCTGAGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR TCA 90 bp | CTCTCAGGAGGCCTTGAACCCCCACCTCATTTCAGCTCACCTCAGCTCCCCCACCAGTCTCCATTGGGCTaGGCCGTCTTCTCCTTGTTG | + |
|
Preference number: 4 (lower is better) Translates to: LSGGLEPPPHFSSPQLPHQSPLG*AVFSLL Trigger: CAACAAGGAGAAGACGGCTCAGCCCAATGGAGACTG...GTGGGGGAGCTGAGGTGAGCTGAAATGAGGTGGGGGTTCAAGGCCTCCTGAGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR CCA 90 bp | GGAGGCCTTGAACCCCCACCTCATTTCAGCTCACCTCAGCTCCCCCACCTGGGAGTATGTGAAGTCCTGTaGGGTCCCAGCATCATCCAG | + |
|
Preference number: 4 (lower is better) Translates to: GGLEPPPHFSSPQLPHLGVCEVL*GPSIIQ Trigger: CTGGATGATGCTGGGACCCCACAGGACTTCACATAC...TCCCAGGTGGGGGAGCTGAGGTGAGCTGAAATGAGGTGGGGGTTCAAGGCCTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR TCA 90 bp | CTCTCAGGAGGCCTTGAACCCCCACCTCATTTCAGCTCACCTCAGCTCCCCCACGAGACTTGCGCCATCTaGAGAAGCCAACACAGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: LSGGLEPPPHFSSPQLPHETCAI*RSQHRR Trigger: TCTTCTGTGTTGGCTTCTTCAGATGGCGCAAGTCTC...GTGGGGGAGCTGAGGTGAGCTGAAATGAGGTGGGGGTTCAAGGCCTCCTGAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR TCA 90 bp | GGGGCATTAAGGAATCCTCAGGAGTCTGAATCTCCTTGGTTCCGGGTTCTGCTCAGGAAACACAGTATGTaGAGTCCTGTGGGGTCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: GALRNPQESESPWFRVLLRKHSM*SPVGSQ Trigger: CTGGGACCCCACAGGACTTCACATACTGTGTTTCCT...GAGCAGAACCCGGAACCAAGGAGATTCAGACTCCTGAGGATTCCTTAATGCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR GCA 90 bp | GGGGCATTAAGGAATCCTCAGGAGTCTGAATCTCCTTGGTTCCGGGTTCTGCTCTCCAGAAGCCCGTTTTaGAAACGCTGGAGAAGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: GALRNPQESESPWFRVLLSRSPF*KRWRRL Trigger: GAGCCTTCTCCAGCGTTTGCAAAACGGGCTTCTGGA...GAGCAGAACCCGGAACCAAGGAGATTCAGACTCCTGAGGATTCCTTAATGCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR CCA 90 bp | GGGGCATTAAGGAATCCTCAGGAGTCTGAATCTCCTTGGTTCCGGGTTCTGCTCATGTCCAGTCTCCATTaGGCTGAGCCGTCTTCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: GALRNPQESESPWFRVLLMSSLH*AEPSSP Trigger: AGGAGAAGACGGCTCAGCCCAATGGAGACTGGACAT...GAGCAGAACCCGGAACCAAGGAGATTCAGACTCCTGAGGATTCCTTAATGCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR TCA 90 bp | CCTGAAGATGTTGGGGCATTAAGGAATCCTCAGGAGTCTGAATCTCCTTGGTTCCACGTGCTTTCCACATaGGCCACAAAGCCACCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: PEDVGALRNPQESESPWFHVLST*ATKPPA Trigger: GGCAGGTGGCTTTGTGGCTCATGTGGAAAGCACGTG...GAACCAAGGAGATTCAGACTCCTGAGGATTCCTTAATGCCCCAACATCTTCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR GCA 90 bp | GGGGCATTAAGGAATCCTCAGGAGTCTGAATCTCCTTGGTTCCGGGTTCTGCTCTGGGAAGGGACAAGCTaGCCATTCTTCATCCATGTG | + |
|
Preference number: 4 (lower is better) Translates to: GALRNPQESESPWFRVLLWEGTS*PFFIHV Trigger: CACATGGATGAAGAATGGGCAGCTTGTCCCTTCCCA...GAGCAGAACCCGGAACCAAGGAGATTCAGACTCCTGAGGATTCCTTAATGCCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR CCA 90 bp | CCTGAAGATGTTGGGGCATTAAGGAATCCTCAGGAGTCTGAATCTCCTTGGTTCGAGACCTTCACTGTCTaGATGGGGGACAGCCCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: PEDVGALRNPQESESPWFETFTV*MGDSPG Trigger: ACCTGGGCTGTCCCCCATCCAGACAGTGAAGGTCTC...GAACCAAGGAGATTCAGACTCCTGAGGATTCCTTAATGCCCCAACATCTTCAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR GCA 90 bp | CCTGAAGATGTTGGGGCATTAAGGAATCCTCAGGAGTCTGAATCTCCTTGGTTCAGCCACAAAGCCACCTaGCCCCATACAGTCCAGACT | + |
|
Preference number: 4 (lower is better) Translates to: PEDVGALRNPQESESPWFSHKAT*PHTVQT Trigger: AGTCTGGACTGTATGGGGGCAGGTGGCTTTGTGGCT...GAACCAAGGAGATTCAGACTCCTGAGGATTCCTTAATGCCCCAACATCTTCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR CCA 90 bp | GGGGCATTAAGGAATCCTCAGGAGTCTGAATCTCCTTGGTTCCGGGTTCTGCTCTTAAAAGGTGTGGTTTaGGCTACTCGGACAGATGGC | + |
|
Preference number: 4 (lower is better) Translates to: GALRNPQESESPWFRVLLLKGVV*ATRTDG Trigger: GCCATCTGTCCGAGTAGCCCAAACCACACCTTTTAA...GAGCAGAACCCGGAACCAAGGAGATTCAGACTCCTGAGGATTCCTTAATGCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR CCA 90 bp | CCTGAAGATGTTGGGGCATTAAGGAATCCTCAGGAGTCTGAATCTCCTTGGTTCGATGGTCACATCCGCTaGATAGAAGCCCCAGACGTA | + |
|
Preference number: 4 (lower is better) Translates to: PEDVGALRNPQESESPWFDGHIR*IEAPDV Trigger: TACGTCTGGGGCTTCTATCCAGCGGATGTGACCATC...GAACCAAGGAGATTCAGACTCCTGAGGATTCCTTAATGCCCCAACATCTTCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR CCA 90 bp | TATTTATTTCAGGAAGGGGACCTGAATAGAGGCAGTATGACACAAGAAAGTGGGCCTTCACTGTCTGGATaGGGGACAGCCCAGGTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: YLFQEGDLNRGSMTQESGPSLSG*GTAQVS Trigger: GGACACCTGGGCTGTCCCCCATCCAGACAGTGAAGG...CCCACTTTCTTGTGTCATACTGCCTCTATTCAGGTCCCCTTCCTGAAATAAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR CCA 90 bp | TATTTATTTCAGGAAGGGGACCTGAATAGAGGCAGTATGACACAAGAAAGTGGGGTCCTTCCGGGTAGGTaGATCCAGAGAGAGGAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: YLFQEGDLNRGSMTQESGVLPGR*IQREEC Trigger: ACACTCCTCTCTCTGGATCCACCTACCCGGAAGGAC...CCCACTTTCTTGTGTCATACTGCCTCTATTCAGGTCCCCTTCCTGAAATAAATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR TCA 90 bp | CCTGAAGATGTTGGGGCATTAAGGAATCCTCAGGAGTCTGAATCTCCTTGGTTCGGCTCTCTTCTTTGTTaGGGATCCTTGAAAAATTTT | + |
|
Preference number: 4 (lower is better) Translates to: PEDVGALRNPQESESPWFGSLLC*GSLKNF Trigger: AAAATTTTTCAAGGATCCTCAACAAAGAAGAGAGCC...GAACCAAGGAGATTCAGACTCCTGAGGATTCCTTAATGCCCCAACATCTTCAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CCA 90 bp | TCACTGTCTGGATGGGGGACAGCCCAGGTGTCCAGTCCCCTCGGATaGGCTCAGAGGTCCCGCTGTGCTGAACCACGCAGGTGTAGACGT | + |
|
Preference number: 5 (lower is better) Translates to: SLSGWGTAQVSSPLG*AQRSRCAEPRRCRR Trigger: ACGTCTACACCTGCGTGGTTCAGCACAGCGGGACCTCTGAGCCCATCCGAGGGGACTGGACACCTGGGCTGTCCCCCATCCAGACAGTGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS TCA 90 bp | TCCTGTGGGGTCCCAGCATCATCCAGCACGCACGTGCTTTCCACATaGGCCACAAAGCCACCTGCCCCCATACAGTCCAGACTGAGGACC | + |
|
Preference number: 5 (lower is better) Translates to: SCGVPASSSTHVLST*ATKPPAPIQSRLRT Trigger: GGTCCTCAGTCTGGACTGTATGGGGGCAGGTGGCTTTGTGGCTCATGTGGAAAGCACGTGCGTGCTGGATGATGCTGGGACCCCACAGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CCA 90 bp | ACAGATGGCGCTCTCGTTCTGTGGGTCAGCGCATTCCAGAAGGGCTaGGTGTGGGAGGCACAGTCCAGAAGCCCGTTTTGCAAACGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: TDGALVLWVSAFQKG*VWEAQSRSPFCKRW Trigger: CCAGCGTTTGCAAAACGGGCTTCTGGACTGTGCCTCCCACACCCAGCCCTTCTGGAATGCGCTGACCCACAGAACGAGAGCGCCATCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CCA 90 bp | AAAGGTGTGGTTTGGGCTACTCGGACAGATGGCGCTCTCGTTCTGTaGGTCAGCGCATTCCAGAAGGGCTGGGTGTGGGAGGCACAGTCC | + |
|
Preference number: 5 (lower is better) Translates to: KGVVWATRTDGALVL*VSAFQKGWVWEAQS Trigger: GGACTGTGCCTCCCACACCCAGCCCTTCTGGAATGCGCTGACCCACAGAACGAGAGCGCCATCTGTCCGAGTAGCCCAAACCACACCTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS GCA 90 bp | ATCATCCAGCACGCACGTGCTTTCCACATGAGCCACAAAGCCACCTaGCCCCATACAGTCCAGACTGAGGACCAGCAGCAGCAGCCAGAG | + |
|
Preference number: 5 (lower is better) Translates to: IIQHARAFHMSHKAT*PHTVQTEDQQQQPE Trigger: CTCTGGCTGCTGCTGCTGGTCCTCAGTCTGGACTGTATGGGGGCAGGTGGCTTTGTGGCTCATGTGGAAAGCACGTGCGTGCTGGATGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CCA 90 bp | CGGCTCCCTTGTGTTAAAAGGTGTGGTTTGGGCTACTCGGACAGATaGCGCTCTCGTTCTGTGGGTCAGCGCATTCCAGAAGGGCTGGGT | + |
|
Preference number: 5 (lower is better) Translates to: RLPCVKRCGLGYSDR*RSRSVGQRIPEGLG Trigger: ACCCAGCCCTTCTGGAATGCGCTGACCCACAGAACGAGAGCGCCATCTGTCCGAGTAGCCCAAACCACACCTTTTAACACAAGGGAGCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CCA 90 bp | GGGTTAGGGCTAGGTAGGAGACTGTCTGGTATGTCCAGTCTCCATTaGGCTGAGCCGTCTTCTCCTTGTTGCTGTGGGAAGGGACAAGCT | + |
|
Preference number: 5 (lower is better) Translates to: GLGLGRRLSGMSSLH*AEPSSPCCCGKGQA Trigger: AGCTTGTCCCTTCCCACAGCAACAAGGAGAAGACGGCTCAGCCCAATGGAGACTGGACATACCAGACAGTCTCCTACCTAGCCCTAACCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS GCA 90 bp | TTCCAGAAGGGCTGGGTGTGGGAGGCACAGTCCAGAAGCCCGTTTTaGAAACGCTGGAGAAGGCTCTCTTCTTTGTTGAGGATCCTTGAA | + |
|
Preference number: 5 (lower is better) Translates to: FQKGWVWEAQSRSPF*KRWRRLSSLLRILE Trigger: TTCAAGGATCCTCAACAAAGAAGAGAGCCTTCTCCAGCGTTTGCAAAACGGGCTTCTGGACTGTGCCTCCCACACCCAGCCCTTCTGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR CAA 90 bp | GGGGCATTAAGGAATCCTCAGGAGTCTGAATCTCCTTGGTTCCGGGTTCTGCTCGCCAGCAGATCTTTGTaGAAGGAAACACAGTATGTG | + |
|
Preference number: 5 (lower is better) Translates to: GALRNPQESESPWFRVLLASRSL*KETQYV Trigger: CACATACTGTGTTTCCTTCAACAAAGATCTGCTGGC...GAGCAGAACCCGGAACCAAGGAGATTCAGACTCCTGAGGATTCCTTAATGCCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR CAA 90 bp | GGGGCATTAAGGAATCCTCAGGAGTCTGAATCTCCTTGGTTCCGGGTTCTGCTCCAGGCCAGCAGATCTTaGTTGAAGGAAACACAGTAT | + |
|
Preference number: 5 (lower is better) Translates to: GALRNPQESESPWFRVLLQASRS*LKETQY Trigger: ATACTGTGTTTCCTTCAACAAAGATCTGCTGGCCTG...GAGCAGAACCCGGAACCAAGGAGATTCAGACTCCTGAGGATTCCTTAATGCCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS-3UTR CAA 90 bp | GGGGCATTAAGGAATCCTCAGGAGTCTGAATCTCCTTGGTTCCGGGTTCTGCTCAGGCTCTCTTCTTTGTaGAGGATCCTTGAAAAATTT | + |
|
Preference number: 5 (lower is better) Translates to: GALRNPQESESPWFRVLLRLSSL*RILEKF Trigger: AAATTTTTCAAGGATCCTCAACAAAGAAGAGAGCCT...GAGCAGAACCCGGAACCAAGGAGATTCAGACTCCTGAGGATTCCTTAATGCCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CCA 72 bp | GGATGGGGGACAGCCCAGGTGTCCAGTCCCCTCGGATaGGCTCAGAGGTCCCGCTGTGCTGAACCACGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: GWGTAQVSSPLG*AQRSRCAEPRR Trigger: CCTGCGTGGTTCAGCACAGCGGGACCTCTGAGCCCATCCGAGGGGACTGGACACCTGGGCTGTCCCCCATCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CCA 72 bp | GTTTGGGCTACTCGGACAGATGGCGCTCTCGTTCTGTaGGTCAGCGCATTCCAGAAGGGCTGGGTGTGGGAG | + |
|
Preference number: 6 (lower is better) Translates to: VWATRTDGALVL*VSAFQKGWVWE Trigger: CTCCCACACCCAGCCCTTCTGGAATGCGCTGACCCACAGAACGAGAGCGCCATCTGTCCGAGTAGCCCAAAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS GCA 72 bp | CACGCACGTGCTTTCCACATGAGCCACAAAGCCACCTaGCCCCATACAGTCCAGACTGAGGACCAGCAGCAG | + |
|
Preference number: 6 (lower is better) Translates to: HARAFHMSHKAT*PHTVQTEDQQQ Trigger: CTGCTGCTGGTCCTCAGTCTGGACTGTATGGGGGCAGGTGGCTTTGTGGCTCATGTGGAAAGCACGTGCGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CAA 90 bp | GTAGCAGGCCAGCATCACCGGCTCCCTTGTGTTAAAAGGTGTGGTTaGGGCTACTCGGACAGATGGCGCTCTCGTTCTGTGGGTCAGCGC | + |
|
Preference number: 6 (lower is better) Translates to: VAGQHHRLPCVKRCG*GYSDRWRSRSVGQR Trigger: GCGCTGACCCACAGAACGAGAGCGCCATCTGTCCGAGTAGCCCAAACCACACCTTTTAACACAAGGGAGCCGGTGATGCTGGCCTGCTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS TCA 72 bp | GTCCCAGCATCATCCAGCACGCACGTGCTTTCCACATaGGCCACAAAGCCACCTGCCCCCATACAGTCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: VPASSSTHVLST*ATKPPAPIQSR Trigger: TCTGGACTGTATGGGGGCAGGTGGCTTTGTGGCTCATGTGGAAAGCACGTGCGTGCTGGATGATGCTGGGAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS GCA 72 bp | GGCTGGGTGTGGGAGGCACAGTCCAGAAGCCCGTTTTaGAAACGCTGGAGAAGGCTCTCTTCTTTGTTGAGG | + |
|
Preference number: 6 (lower is better) Translates to: GWVWEAQSRSPF*KRWRRLSSLLR Trigger: CCTCAACAAAGAAGAGAGCCTTCTCCAGCGTTTGCAAAACGGGCTTCTGGACTGTGCCTCCCACACCCAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CAA 72 bp | GGGCTGGGTGTGGGAGGCACAGTCCAGAAGCCCGTTTaGCAAACGCTGGAGAAGGCTCTCTTCTTTGTTGAG | + |
|
Preference number: 6 (lower is better) Translates to: GLGVGGTVQKPV*QTLEKALFFVE Trigger: CTCAACAAAGAAGAGAGCCTTCTCCAGCGTTTGCAAAACGGGCTTCTGGACTGTGCCTCCCACACCCAGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS GCA 72 bp | TCCAGTCTCCATTGGGCTGAGCCGTCTTCTCCTTGTTaGTGTGGGAAGGGACAAGCTGCCCATTCTTCATCC | + |
|
Preference number: 6 (lower is better) Translates to: SSLHWAEPSSPC*CGKGQAAHSSS Trigger: GGATGAAGAATGGGCAGCTTGTCCCTTCCCACAGCAACAAGGAGAAGACGGCTCAGCCCAATGGAGACTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CCA 72 bp | AGCATCACCGGCTCCCTTGTGTTAAAAGGTGTGGTTTaGGCTACTCGGACAGATGGCGCTCTCGTTCTGTGG | + |
|
Preference number: 6 (lower is better) Translates to: SITGSLVLKGVV*ATRTDGALVLW Trigger: CCACAGAACGAGAGCGCCATCTGTCCGAGTAGCCCAAACCACACCTTTTAACACAAGGGAGCCGGTGATGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CCA 72 bp | CTGCCCATTCTTCATCCATGTGATGGTCACATCCGCTaGATAGAAGCCCCAGACGTAGCAGGCCAGCATCAC | + |
|
Preference number: 6 (lower is better) Translates to: LPILHPCDGHIR*IEAPDVAGQHH Trigger: GTGATGCTGGCCTGCTACGTCTGGGGCTTCTATCCAGCGGATGTGACCATCACATGGATGAAGAATGGGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CAA 72 bp | CAGCATCACCGGCTCCCTTGTGTTAAAAGGTGTGGTTaGGGCTACTCGGACAGATGGCGCTCTCGTTCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: QHHRLPCVKRCG*GYSDRWRSRSV Trigger: CACAGAACGAGAGCGCCATCTGTCCGAGTAGCCCAAACCACACCTTTTAACACAAGGGAGCCGGTGATGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CCA 72 bp | CTAGGTAGGAGACTGTCTGGTATGTCCAGTCTCCATTaGGCTGAGCCGTCTTCTCCTTGTTGCTGTGGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: LGRRLSGMSSLH*AEPSSPCCCGK Trigger: CTTCCCACAGCAACAAGGAGAAGACGGCTCAGCCCAATGGAGACTGGACATACCAGACAGTCTCCTACCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CCA 72 bp | TGTGTTAAAAGGTGTGGTTTGGGCTACTCGGACAGATaGCGCTCTCGTTCTGTGGGTCAGCGCATTCCAGAA | + |
|
Preference number: 6 (lower is better) Translates to: CVKRCGLGYSDR*RSRSVGQRIPE Trigger: TTCTGGAATGCGCTGACCCACAGAACGAGAGCGCCATCTGTCCGAGTAGCCCAAACCACACCTTTTAACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CAA 72 bp | CCCACATCTGGATCCCAGCAGGCCAGCAGATCTTTGTaGAAGGAAACACAGTATGTGAAGTCCTGTGGGGTC | + |
|
Preference number: 6 (lower is better) Translates to: PTSGSQQASRSL*KETQYVKSCGV Trigger: GACCCCACAGGACTTCACATACTGTGTTTCCTTCAACAAAGATCTGCTGGCCTGCTGGGATCCAGATGTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CAA 90 bp | GGGACTATTTTTCCCACATCTGGATCCCAGCAGGCCAGCAGATCTTaGTTGAAGGAAACACAGTATGTGAAGTCCTGTGGGGTCCCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: GTIFPTSGSQQASRS*LKETQYVKSCGVPA Trigger: TGCTGGGACCCCACAGGACTTCACATACTGTGTTTCCTTCAACAAAGATCTGCTGGCCTGCTGGGATCCAGATGTGGGAAAAATAGTCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CCA 72 bp | TGGGAGGCACAGTCCAGAAGCCCGTTTTGCAAACGCTaGAGAAGGCTCTCTTCTTTGTTGAGGATCCTTGAA | + |
|
Preference number: 6 (lower is better) Translates to: WEAQSRSPFCKR*RRLSSLLRILE Trigger: TTCAAGGATCCTCAACAAAGAAGAGAGCCTTCTCCAGCGTTTGCAAAACGGGCTTCTGGACTGTGCCTCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CAA 72 bp | TTTCCCACATCTGGATCCCAGCAGGCCAGCAGATCTTaGTTGAAGGAAACACAGTATGTGAAGTCCTGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: FPTSGSQQASRS*LKETQYVKSCG Trigger: CCCACAGGACTTCACATACTGTGTTTCCTTCAACAAAGATCTGCTGGCCTGCTGGGATCCAGATGTGGGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||
| CDS CAA 90 bp | ACTATTTTTCCCACATCTGGATCCCAGCAGGCCAGCAGATCTTTGTaGAAGGAAACACAGTATGTGAAGTCCTGTGGGGTCCCAGCATCA | + |
|
Preference number: 6 (lower is better) Translates to: TIFPTSGSQQASRSL*KETQYVKSCGVPAS Trigger: TGATGCTGGGACCCCACAGGACTTCACATACTGTGTTTCCTTCAACAAAGATCTGCTGGCCTGCTGGGATCCAGATGTGGGAAAAATAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114232.4 |
||