Pregenerated sensors for GUCA2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032978Ensembl transcript IDs: ENSMUST00000044426.8, ENSMUST00000106309.9
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGTGCAGCTGCCTGGGGGCCAAATATGGCAACTCTGCATCCACATTaGCTTGCTAAGGATCCATTTATGCTGGGAGGATGGCGATTACTT | + |
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Preference number: 1 (lower is better) Translates to: GAAAWGPNMATLHPH*LAKDPFMLGGWRLL Trigger: AAGTAATCGCCATCCTCCCAGCATAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATTTGGCCCCCAGGCAGCTGCACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| 3UTR CAA 90 bp | CAGCTGCCTGGGGGCCAAATATGGCAACTCTGCATCCACATTGCCTaGCTAAGGATCCATTTATGCTGGGAGGATGGCGATTACTTCAAT | + |
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Preference number: 2 (lower is better) Translates to: QLPGGQIWQLCIHIA*LRIHLCWEDGDYFN Trigger: ATTGAAGTAATCGCCATCCTCCCAGCATAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATTTGGCCCCCAGGCAGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| 3UTR-3UTR GCA 90 bp | GGGGGCCAAATATGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATTTACGATTACTTCAATGGTaGCTAAGTATGGACAGGTTG | + |
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Preference number: 2 (lower is better) Translates to: GGQIWQLCIHIALLRIHLRLLQW*LSMDRL Trigger: CAACCTGTCCATACTTAGGCACCATTGAAGTAATCG...TAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATTTGGCCCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| 3UTR GCA 72 bp | GCCTGGGGGCCAAATATGGCAACTCTGCATCCACATTaGCTTGCTAAGGATCCATTTATGCTGGGAGGATGG | + |
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Preference number: 3 (lower is better) Translates to: AWGPNMATLHPH*LAKDPFMLGGW Trigger: CCATCCTCCCAGCATAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATTTGGCCCCCAGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| 3UTR GCA 72 bp | CAGGTGCAGCTGCCTGGGGGCCAAATATGGCAACTCTaGATCCACATTGCCTTGCTAAGGATCCATTTATGC | + |
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Preference number: 3 (lower is better) Translates to: QVQLPGGQIWQL*IHIALLRIHLC Trigger: GCATAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATTTGGCCCCCAGGCAGCTGCACCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS-3UTR CCA 90 bp | GCCTGGGGGCCAAATATGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCAGGCAAGGCTGGGTTATaGCACACAGCAGGGAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: AWGPNMATLHPHCLAKDPGKAGL*HTAGRR Trigger: CCTCCTCCCTGCTGTGTGCCATAACCCAGCCTTGCC...TGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATTTGGCCCCCAGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS-3UTR GCA 90 bp | TCAATGGTGCCTAAGTATGGACAGGTTGGGCTGTGGGGAAAGTGTCCGGAGTGGGATGTAGACACCCTGTaGACTCTGCAGGAGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: SMVPKYGQVGLWGKCPEWDVDTL*TLQEQQ Trigger: CTGCTGCTCCTGCAGAGTGCACAGGGTGTCTACATC...CCACTCCGGACACTTTCCCCACAGCCCAACCTGTCCATACTTAGGCACCATTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044426.8 |
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| CDS-3UTR CCA 90 bp | ATGGTGCCTAAGTATGGACAGGTTGGGCTGTGGGGAAAGTGTCCGGAGTGGTCTGTTCACATTCGTCGGTaGCGATGGTCCTCAAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: MVPKYGQVGLWGKCPEWSVHIRR*RWSSRP Trigger: AGGCCTTGAGGACCATCGCCACCGACGAATGTGAAC...AGACCACTCCGGACACTTTCCCCACAGCCCAACCTGTCCATACTTAGGCACCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS-3UTR CCA 90 bp | CTGCCTGGGGGCCAAATATGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCCACAGAGTTCCCTCTaGGCTCCTCTAGGGTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: LPGGQIWQLCIHIALLRIPQSSL*APLGFL Trigger: AAGGAACCCTAGAGGAGCCCAGAGGGAACTCTGTGG...GATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATTTGGCCCCCAGGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106309.9 |
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| CDS-3UTR GCA 90 bp | TGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATTTATGCTGGGAGGATACACCCTGTGCACTCTaGAGGAGCAGCAGCAGGACG | + |
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Preference number: 4 (lower is better) Translates to: WQLCIHIALLRIHLCWEDTPCAL*RSSSRT Trigger: CGTCCTGCTGCTGCTCCTGCAGAGTGCACAGGGTGT...ATCCTCCCAGCATAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044426.8 |
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| CDS-3UTR CCA 90 bp | ATGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATTTATGCTGGGAGGAGGCAAGGCTGGGTTATaGCACACAGCAGGGAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: MATLHPHCLAKDPFMLGGGKAGL*HTAGRR Trigger: CCTCCTCCCTGCTGTGTGCCATAACCCAGCCTTGCC...TCCTCCCAGCATAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS-3UTR CCA 90 bp | TGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATTTATGCTGGGAGGATGTGCTGGCAGCTTCCTaGGAGGCACAAACAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: WQLCIHIALLRIHLCWEDVLAAS*EAQTGW Trigger: CCAGCCTGTTTGTGCCTCCCAGGAAGCTGCCAGCAC...ATCCTCCCAGCATAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS-3UTR CCA 90 bp | TCAATGGTGCCTAAGTATGGACAGGTTGGGCTGTGGGGAAAGTGTCCGGAGTGGGATTCCAGCTGGACTTaGAAGCCATGGTACAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: SMVPKYGQVGLWGKCPEWDSSWT*KPWYRE Trigger: TTCCCTGTACCATGGCTTCCAAGTCCAGCTGGAATC...CCACTCCGGACACTTTCCCCACAGCCCAACCTGTCCATACTTAGGCACCATTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106309.9 |
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| CDS-3UTR CCA 90 bp | GGGGGCCAAATATGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATTTAGAGGCACAAACAGGCTaGAGGTCCAAGGGCAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: GGQIWQLCIHIALLRIHLEAQTG*RSKGKA Trigger: AGCCTTGCCCTTGGACCTCCAGCCTGTTTGTGCCTC...TAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATTTGGCCCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS-3UTR CCA 90 bp | TGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATTTATGCTGGGAGGATGAGGCACAAACAGGCTaGAGGTCCAAGGGCAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: WQLCIHIALLRIHLCWEDEAQTG*RSKGKA Trigger: AGCCTTGCCCTTGGACCTCCAGCCTGTTTGTGCCTC...ATCCTCCCAGCATAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS-3UTR TCA 90 bp | TGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATTTATGCTGGGAGGATACACTGTGGCTGTGCTaGCTTCCAAGGAGAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: WQLCIHIALLRIHLCWEDTLWLC*LPRRAE Trigger: CTCTGCTCTCCTTGGAAGTCAGCACAGCCACAGTGT...ATCCTCCCAGCATAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106309.9 |
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| CDS-3UTR CCA 90 bp | AATATGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATTTATGCTGGGAGTGCTGGCAGCTTCCTaGGAGGCACAAACAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: NMATLHPHCLAKDPFMLGVLAAS*EAQTGW Trigger: CCAGCCTGTTTGTGCCTCCCAGGAAGCTGCCAGCAC...TCCCAGCATAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS-3UTR CCA 90 bp | TGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATTTATGCTGGGAGGATGTTCACATTCGTCGGTaGCGATGGTCCTCAAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: WQLCIHIALLRIHLCWEDVHIRR*RWSSRP Trigger: AGGCCTTGAGGACCATCGCCACCGACGAATGTGAAC...ATCCTCCCAGCATAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| 3UTR CAA 72 bp | TGGCGATTACTTCAATGGTGCCTAAGTATGGACAGGTaGGGCTGTGGGGAAAGTGTCCGGAGTGGTCTTAAG | + |
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Preference number: 4 (lower is better) Translates to: WRLLQWCLSMDR*GCGESVRSGLK Trigger: CTTAAGACCACTCCGGACACTTTCCCCACAGCCCAACCTGTCCATACTTAGGCACCATTGAAGTAATCGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS-3UTR TCA 90 bp | AATATGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATTTATGCTGGGAATTTGCCCATGTAGGTaGGCACAGGCAGGGAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: NMATLHPHCLAKDPFMLGICPCR*AQAGSH Trigger: GTGGCTCCCTGCCTGTGCTCACCTACATGGGCAAAT...TCCCAGCATAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106309.9 |
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| CDS-3UTR CCA 90 bp | CCTGGGGGCCAAATATGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATGATTCCAGCTGGACTTaGAAGCCATGGTACTTGATG | + |
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Preference number: 4 (lower is better) Translates to: PGGQIWQLCIHIALLRIHDSSWT*KPWYLM Trigger: CATCAAGTACCATGGCTTCCAAGTCCAGCTGGAATC...ATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATTTGGCCCCCAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044426.8 |
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| CDS-3UTR CCA 90 bp | CCTGGGGGCCAAATATGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATTTCACTGATTCCAGCTaGACTTGGAAGCCATGGTAC | + |
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Preference number: 4 (lower is better) Translates to: PGGQIWQLCIHIALLRIHFTDSS*TWKPWY Trigger: GTACCATGGCTTCCAAGTCCAGCTGGAATCAGTGAA...ATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATTTGGCCCCCAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS-3UTR CCA 90 bp | GGGGGCCAAATATGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATTTATTCACTGATTCCAGCTaGACTTGGAAGCCATGGTAC | + |
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Preference number: 4 (lower is better) Translates to: GGQIWQLCIHIALLRIHLFTDSS*TWKPWY Trigger: GTACCATGGCTTCCAAGTCCAGCTGGAATCAGTGAA...TAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATTTGGCCCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS-3UTR CCA 90 bp | ATGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATTTATGCTGGGAGGATGGACTTGGAAGCCATaGTACAGGGAATCCATTCTG | + |
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Preference number: 4 (lower is better) Translates to: MATLHPHCLAKDPFMLGGWTWKP*YRESIL Trigger: CAGAATGGATTCCCTGTACCATGGCTTCCAAGTCCA...TCCTCCCAGCATAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106309.9 |
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| CDS CCA 90 bp | AGCTTCCTGGGAGGCACAAACAGGCTGGAGGTCCAAGGGCAAGGCTaGGTTATGGCACACAGCAGGGAGGAGGCCACTTCTCCGAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: SFLGGTNRLEVQGQG*VMAHSREEATSPRL Trigger: CAGCCTCGGAGAAGTGGCCTCCTCCCTGCTGTGTGCCATAACCCAGCCTTGCCCTTGGACCTCCAGCCTGTTTGTGCCTCCCAGGAAGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS CCA 90 bp | AAGGCCTTGAAGGTGCTGGCAGCTTCCTGGGAGGCACAAACAGGCTaGAGGTCCAAGGGCAAGGCTGGGTTATGGCACACAGCAGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: KALKVLAASWEAQTG*RSKGKAGLWHTAGR Trigger: CCTCCCTGCTGTGTGCCATAACCCAGCCTTGCCCTTGGACCTCCAGCCTGTTTGTGCCTCCCAGGAAGCTGCCAGCACCTTCAAGGCCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS GCA 90 bp | TTCCAGCTGGACTTGGAAGCCATGGTACTTGATGTAGACACCCTGTaGACTCTGCAGGAGCAGCAGCAGGACGACGGCAGCCCACAGTTG | + |
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Preference number: 5 (lower is better) Translates to: FQLDLEAMVLDVDTL*TLQEQQQDDGSPQL Trigger: CAACTGTGGGCTGCCGTCGTCCTGCTGCTGCTCCTGCAGAGTGCACAGGGTGTCTACATCAAGTACCATGGCTTCCAAGTCCAGCTGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044426.8 |
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| CDS-3UTR CAA 90 bp | TCAATGGTGCCTAAGTATGGACAGGTTGGGCTGTGGGGAAAGTGTCCGGAGTGGCTCCGAGGCTGGGGATaGGACATCTCCTTCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: SMVPKYGQVGLWGKCPEWLRGWG*DISFSS Trigger: GGAGGAGAAGGAGATGTCCAATCCCCAGCCTCGGAG...CCACTCCGGACACTTTCCCCACAGCCCAACCTGTCCATACTTAGGCACCATTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS CCA 90 bp | GCTGGGTTATGGCACACAGCAGGGAGGAGGCCACTTCTCCGAGGCTaGGGATTGGACATCTCCTTCTCCTCCAACTCATTCAGCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: AGLWHTAGRRPLLRG*GLDISFSSNSFSFF Trigger: GAAGAAGCTGAATGAGTTGGAGGAGAAGGAGATGTCCAATCCCCAGCCTCGGAGAAGTGGCCTCCTCCCTGCTGTGTGCCATAACCCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS-3UTR CAA 90 bp | GCCTGGGGGCCAAATATGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCAATGGTCCTCAAGGCCTaGAAGGTGCTGGCAGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: AWGPNMATLHPHCLAKDPMVLKA*KVLAAS Trigger: GGAAGCTGCCAGCACCTTCAAGGCCTTGAGGACCAT...TGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATTTGGCCCCCAGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS-3UTR CAA 90 bp | CCTGGGGGCCAAATATGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATATGGTCCTCAAGGCCTaGAAGGTGCTGGCAGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: PGGQIWQLCIHIALLRIHMVLKA*KVLAAS Trigger: GGAAGCTGCCAGCACCTTCAAGGCCTTGAGGACCAT...ATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCATATTTGGCCCCCAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS TCA 90 bp | TCAGCTTCTTCACTGATTCCAGCTGGACTTGGAAGCCATGGTACTTaGTGTAGACACCCTGTGCACTCTGCAGGAGCAGCAGCAGGACGA | + |
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Preference number: 5 (lower is better) Translates to: SASSLIPAGLGSHGT*CRHPVHSAGAAAGR Trigger: TCGTCCTGCTGCTGCTCCTGCAGAGTGCACAGGGTGTCTACATCAAGTACCATGGCTTCCAAGTCCAGCTGGAATCAGTGAAGAAGCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044426.8 |
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| CDS TCA 90 bp | GATTCCAGCTGGACTTGGAAGCCATGGTACAGGGAATCCATTCTGTaGTTTGCCCATGTAGGTGAGCACAGGCAGGGAGCCACAGAGTTC | + |
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Preference number: 5 (lower is better) Translates to: DSSWTWKPWYRESIL*FAHVGEHRQGATEF Trigger: GAACTCTGTGGCTCCCTGCCTGTGCTCACCTACATGGGCAAATCACAGAATGGATTCCCTGTACCATGGCTTCCAAGTCCAGCTGGAATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106309.9 |
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| CDS-3UTR CAA 90 bp | ATGGCAACTCTGCATCCACATTGCCTTGCTAAGGATCCATTTATGCTGGGAGGACTCCGAGGCTGGGGATaGGACATCTCCTTCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: MATLHPHCLAKDPFMLGGLRGWG*DISFSS Trigger: GGAGGAGAAGGAGATGTCCAATCCCCAGCCTCGGAG...TCCTCCCAGCATAAATGGATCCTTAGCAAGGCAATGTGGATGCAGAGTTGCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS TCA 90 bp | GGGATTGGACATCTCCTTCTCCTCCAACTCATTCAGCTTCTTCACTaGTTCCAGCTGGACTTGGAAGCCATGGTACTTGATGTAGACACC | + |
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Preference number: 5 (lower is better) Translates to: GIGHLLLLQLIQLLH*FQLDLEAMVLDVDT Trigger: GGTGTCTACATCAAGTACCATGGCTTCCAAGTCCAGCTGGAATCAGTGAAGAAGCTGAATGAGTTGGAGGAGAAGGAGATGTCCAATCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044426.8 |
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| CDS TCA 90 bp | GGGATTGGACATCTCCTTCTCCTCCAACTCATTCAGCTTCTTCACTaGTTCCAGCTGGACTTGGAAGCCATGGTACAGGGAATCCATTCT | + |
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Preference number: 5 (lower is better) Translates to: GIGHLLLLQLIQLLH*FQLDLEAMVQGIHS Trigger: AGAATGGATTCCCTGTACCATGGCTTCCAAGTCCAGCTGGAATCAGTGAAGAAGCTGAATGAGTTGGAGGAGAAGGAGATGTCCAATCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106309.9 |
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| CDS CCA 72 bp | GGAGGCACAAACAGGCTGGAGGTCCAAGGGCAAGGCTaGGTTATGGCACACAGCAGGGAGGAGGCCACTTCT | + |
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Preference number: 6 (lower is better) Translates to: GGTNRLEVQGQG*VMAHSREEATS Trigger: AGAAGTGGCCTCCTCCCTGCTGTGTGCCATAACCCAGCCTTGCCCTTGGACCTCCAGCCTGTTTGTGCCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS TCA 72 bp | GTTCACATTCGTCGGTGGCGATGGTCCTCAAGGCCTTaGAGGTGCTGGCAGCTTCCTGGGAGGCACAAACAG | + |
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Preference number: 6 (lower is better) Translates to: VHIRRWRWSSRP*RCWQLPGRHKQ Trigger: CTGTTTGTGCCTCCCAGGAAGCTGCCAGCACCTTCAAGGCCTTGAGGACCATCGCCACCGACGAATGTGAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS GCA 72 bp | GACTTGGAAGCCATGGTACTTGATGTAGACACCCTGTaGACTCTGCAGGAGCAGCAGCAGGACGACGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: DLEAMVLDVDTL*TLQEQQQDDGS Trigger: GCTGCCGTCGTCCTGCTGCTGCTCCTGCAGAGTGCACAGGGTGTCTACATCAAGTACCATGGCTTCCAAGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044426.8 |
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| CDS CCA 72 bp | TGGCACACAGCAGGGAGGAGGCCACTTCTCCGAGGCTaGGGATTGGACATCTCCTTCTCCTCCAACTCATTC | + |
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Preference number: 6 (lower is better) Translates to: WHTAGRRPLLRG*GLDISFSSNSF Trigger: GAATGAGTTGGAGGAGAAGGAGATGTCCAATCCCCAGCCTCGGAGAAGTGGCCTCCTCCCTGCTGTGTGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS TCA 72 bp | GGCTCCTCTAGGGTTCCTTCCACACTGTGGCTGTGCTaGCTTCCAAGGAGAGCAGAGGAGACTAAACCTGCC | + |
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Preference number: 6 (lower is better) Translates to: GSSRVPSTLWLC*LPRRAEETKPA Trigger: GGCAGGTTTAGTCTCCTCTGCTCTCCTTGGAAGTCAGCACAGCCACAGTGTGGAAGGAACCCTAGAGGAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106309.9 |
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| CDS CAA 72 bp | AGTTCACATTCGTCGGTGGCGATGGTCCTCAAGGCCTaGAAGGTGCTGGCAGCTTCCTGGGAGGCACAAACA | + |
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Preference number: 6 (lower is better) Translates to: SSHSSVAMVLKA*KVLAASWEAQT Trigger: TGTTTGTGCCTCCCAGGAAGCTGCCAGCACCTTCAAGGCCTTGAGGACCATCGCCACCGACGAATGTGAACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044426.8 ENSMUST00000106309.9 |
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| CDS TCA 72 bp | GTACAGGGAATCCATTCTGTGATTTGCCCATGTAGGTaGGCACAGGCAGGGAGCCACAGAGTTCCCTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: VQGIHSVICPCR*AQAGSHRVPSG Trigger: CCCAGAGGGAACTCTGTGGCTCCCTGCCTGTGCTCACCTACATGGGCAAATCACAGAATGGATTCCCTGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106309.9 |
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| CDS TCA 72 bp | TGGACTTGGAAGCCATGGTACAGGGAATCCATTCTGTaGTTTGCCCATGTAGGTGAGCACAGGCAGGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: WTWKPWYRESIL*FAHVGEHRQGA Trigger: GGCTCCCTGCCTGTGCTCACCTACATGGGCAAATCACAGAATGGATTCCCTGTACCATGGCTTCCAAGTCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106309.9 |
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| CDS TCA 72 bp | TCACTGATTCCAGCTGGACTTGGAAGCCATGGTACTTaGTGTAGACACCCTGTGCACTCTGCAGGAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: SLIPAGLGSHGT*CRHPVHSAGAA Trigger: TGCTGCTCCTGCAGAGTGCACAGGGTGTCTACATCAAGTACCATGGCTTCCAAGTCCAGCTGGAATCAGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044426.8 |
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