Pregenerated sensors for GUCA1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023982Ensembl transcript IDs: ENSMUST00000059348.9
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AACAGAACAACCACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCAGAAGCGGAGTCTGCGCACGATaGCGGTCAAGTCCAGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: NRTTTPGTARGQPSAGRSGVCAR*RSSPGF Trigger: GAAGCCTGGACTTGACCGGCATCGTGCGCAGACTCC...GCTTCTGCCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTTGTTCTGTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR CCA 90 bp | CACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCAGAAGCCACAGGGTGAAGTTCCACATACTGGCTaGCTGAGGGGCTCAGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: HTRHRTGPALSRQKPQGEVPHTG*LRGSGS Trigger: AGAACCTGAGCCCCTCAGCCAGCCAGTATGTGGAAC...TTCACCCTGTGGCTTCTGCCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR TCA 90 bp | ACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCAGAAGCCACAGGGTGAATAGGGGCTCAGGTTCTTaGGACCAAAGAACTGGCGGA | + |
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Preference number: 4 (lower is better) Translates to: TPGTARGQPSAGRSHRVNRGSGS*DQRTGG Trigger: TCCGCCAGTTCTTTGGTCTCAAGAACCTGAGCCCCT...ATTCACCCTGTGGCTTCTGCCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR TCA 90 bp | GACAAGAACAGAACAACCACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCCACATACTGGCTGGCTaGGGGGCTCAGGTTCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: DKNRTTTPGTARGQPSAGHILAG*GAQVLE Trigger: CTCAAGAACCTGAGCCCCTCAGCCAGCCAGTATGTG...GCCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTTGTTCTGTTCTTGTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR GCA 90 bp | GAACAGAACAACCACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCAGAAGGACCAGGCTGAGGGCTaGCACGTACTCCATGAAGTC | + |
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Preference number: 4 (lower is better) Translates to: EQNNHTRHRTGPALSRQKDQAEG*HVLHEV Trigger: GACTTCATGGAGTACGTGGCAGCCCTCAGCCTGGTC...CTTCTGCCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTTGTTCTGTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR GCA 90 bp | GAACAACCACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCAGAAGCCACATGTCTATGCACCCGTTaGCGTCGACGTCGTAGAGCT | + |
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Preference number: 4 (lower is better) Translates to: EQPHQAPHGASPQQAEATCLCTR*RRRRRA Trigger: AGCTCTACGACGTCGACGGCAACGGGTGCATAGACA...TGTGGCTTCTGCCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTTGTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR CCA 90 bp | AGAACAGAACAACCACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCAGAATCGTGTTCGCCGTTCTaGAGTCTGCGCACGATGCCG | + |
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Preference number: 4 (lower is better) Translates to: RTEQPHQAPHGASPQQAESCSPF*SLRTMP Trigger: CGGCATCGTGCGCAGACTCCAGAACGGCGAACACGA...TTCTGCCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTTGTTCTGTTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR GCA 90 bp | ACAAGAACAGAACAACCACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCAGATGGCACTCGGTGCTaGTCAGCTCTTCCACGGACT | + |
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Preference number: 4 (lower is better) Translates to: TRTEQPHQAPHGASPQQADGTRC*SALPRT Trigger: AGTCCGTGGAAGAGCTGAGCAGCACCGAGTGCCATC...TGCCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTTGTTCTGTTCTTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR CCA 90 bp | GAACAGAACAACCACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCAGAAGATCTGTTCCACATACTaGCTGGCTGAGGGGCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: EQNNHTRHRTGPALSRQKICSTY*LAEGLR Trigger: CCTGAGCCCCTCAGCCAGCCAGTATGTGGAACAGAT...CTTCTGCCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTTGTTCTGTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR CCA 90 bp | CAAGAACAGAACAACCACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCAGGTGTCCAGGAGCATCTaGTCCTTCTGCACACCTTCC | + |
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Preference number: 4 (lower is better) Translates to: QEQNNHTRHRTGPALSRQVSRSI*SFCTPS Trigger: GGAAGGTGTGCAGAAGGACCAGATGCTCCTGGACAC...CTGCCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTTGTTCTGTTCTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR GCA 90 bp | AAGACAAGAACAGAACAACCACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGACTGATGGCACTCGGTaGTGCTCAGCTCTTCCACGG | + |
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Preference number: 4 (lower is better) Translates to: KTRTEQPHQAPHGASPQQTDGTR*CSALPR Trigger: CCGTGGAAGAGCTGAGCAGCACCGAGTGCCATCAGT...CTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTTGTTCTGTTCTTGTCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR TCA 90 bp | CAGAACAACCACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCAGAAGCCAAATTTCTTATACCACTaGTGGCACTCGGTGCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: QNNHTRHRTGPALSRQKPNFLYH*WHSVLL Trigger: GAGCAGCACCGAGTGCCATCAGTGGTATAAGAAATT...TGGCTTCTGCCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTTGTTCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR TCA 90 bp | AGACAAGAACAGAACAACCACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCTGCCACGTACTCCATaGAGTCAATGTAGCCATCCT | + |
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Preference number: 4 (lower is better) Translates to: RQEQNNHTRHRTGPALSRLPRTP*SQCSHP Trigger: AGGATGGCTACATTGACTTCATGGAGTACGTGGCAG...CCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTTGTTCTGTTCTTGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR TCA 90 bp | CAAGAACAGAACAACCACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCAGTGTAGCCATCCTTGTTaGAGTCAAAGGTCTCGAACA | + |
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Preference number: 4 (lower is better) Translates to: QEQNNHTRHRTGPALSRQCSHPC*SQRSRT Trigger: TGTTCGAGACCTTTGACTTCAACAAGGATGGCTACA...CTGCCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTTGTTCTGTTCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR GCA 90 bp | AATGTTAAGACAAGAACAGAACAACCACACCAGGCACCGCACGGGGCCAGCCCTAGCATCTGGTCCTTCTaGACACCTTCCATGAACTCC | + |
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Preference number: 4 (lower is better) Translates to: NVKTRTEQPHQAPHGASPSIWSF*TPSMNS Trigger: GGAGTTCATGGAAGGTGTGCAGAAGGACCAGATGCT...AGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTTGTTCTGTTCTTGTCTTAACATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS CCA 90 bp | TCCGCTGCCAGGTCGCCGGTGCCTGCCTCCTCGTGTTCGCCGTTCTaGAGTCTGCGCACGATGCCGGTCAAGTCCAGGCTTCGGGTCAGC | + |
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Preference number: 5 (lower is better) Translates to: SAARSPVPASSCSPF*SLRTMPVKSRLRVS Trigger: GCTGACCCGAAGCCTGGACTTGACCGGCATCGTGCGCAGACTCCAGAACGGCGAACACGAGGAGGCAGGCACCGGCGACCTGGCAGCGGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS GCA 90 bp | CCAGGTCGCCGGTGCCTGCCTCCTCGTGTTCGCCGTTCTGGAGTCTaGGCACGATGCCGGTCAAGTCCAGGCTTCGGGTCAGCGTGTCCA | + |
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Preference number: 5 (lower is better) Translates to: PGRRCLPPRVRRSGV*ARCRSSPGFGSACP Trigger: TGGACACGCTGACCCGAAGCCTGGACTTGACCGGCATCGTGCGCAGACTCCAGAACGGCGAACACGAGGAGGCAGGCACCGGCGACCTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS GCA 90 bp | CGGTGCCTGCCTCCTCGTGTTCGCCGTTCTGGAGTCTGCGCACGATaGCGGTCAAGTCCAGGCTTCGGGTCAGCGTGTCCAGGAGCATCT | + |
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Preference number: 5 (lower is better) Translates to: RCLPPRVRRSGVCAR*RSSPGFGSACPGAS Trigger: AGATGCTCCTGGACACGCTGACCCGAAGCCTGGACTTGACCGGCATCGTGCGCAGACTCCAGAACGGCGAACACGAGGAGGCAGGCACCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR CAA 90 bp | AACCACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCAGAAGCCACAGGGTGAGGGGCTCAGGTTCTaGAGACCAAAGAACTGGCGG | + |
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Preference number: 5 (lower is better) Translates to: NHTRHRTGPALSRQKPQGEGLRF*RPKNWR Trigger: CCGCCAGTTCTTTGGTCTCAAGAACCTGAGCCCCTC...ACCCTGTGGCTTCTGCCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS-3UTR CAA 90 bp | AGAACAACCACACCAGGCACCGCACGGGGCCAGCCCTCAGCAGGCAGAAGCCACAACTTCTGTTCCACTTaGCCCTTGAGGACCAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: RTTTPGTARGQPSAGRSHNFCST*PLRTRL Trigger: CAGCCTGGTCCTCAAGGGCAAAGTGGAACAGAAGTT...GTGGCTTCTGCCTGCTGAGGGCTGGCCCCGTGCGGTGCCTGGTGTGGTTGTTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS GCA 90 bp | AAGTCCAGGCTTCGGGTCAGCGTGTCCAGGAGCATCTGGTCCTTCTaGACACCTTCCATGAACTCCTCCAGGGACAGTTCCCCATCCCCG | + |
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Preference number: 5 (lower is better) Translates to: KSRLRVSVSRSIWSF*TPSMNSSRDSSPSP Trigger: CGGGGATGGGGAACTGTCCCTGGAGGAGTTCATGGAAGGTGTGCAGAAGGACCAGATGCTCCTGGACACGCTGACCCGAAGCCTGGACTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS CCA 90 bp | ATGCCGGTCAAGTCCAGGCTTCGGGTCAGCGTGTCCAGGAGCATCTaGTCCTTCTGCACACCTTCCATGAACTCCTCCAGGGACAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: MPVKSRLRVSVSRSI*SFCTPSMNSSRDSS Trigger: GGAACTGTCCCTGGAGGAGTTCATGGAAGGTGTGCAGAAGGACCAGATGCTCCTGGACACGCTGACCCGAAGCCTGGACTTGACCGGCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS TCA 90 bp | GTGAGCTGGCCAGATGGGCACTCCGTCATAAATTTCTTATACCACTaGTGGCACTCGGTGCTGCTCAGCTCTTCCACGGACTTGCCCTCC | + |
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Preference number: 5 (lower is better) Translates to: VSWPDGHSVINFLYH*WHSVLLSSSTDLPS Trigger: GGAGGGCAAGTCCGTGGAAGAGCTGAGCAGCACCGAGTGCCATCAGTGGTATAAGAAATTTATGACGGAGTGCCCATCTGGCCAGCTCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS CCA 90 bp | CCATCCTTGTTGAAGTCAAAGGTCTCGAACATCTGTTCCACATACTaGCTGGCTGAGGGGCTCAGGTTCTTGAGACCAAAGAACTGGCGG | + |
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Preference number: 5 (lower is better) Translates to: PSLLKSKVSNICSTY*LAEGLRFLRPKNWR Trigger: CCGCCAGTTCTTTGGTCTCAAGAACCTGAGCCCCTCAGCCAGCCAGTATGTGGAACAGATGTTCGAGACCTTTGACTTCAACAAGGATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS CCA 90 bp | GAGACCAAAGAACTGGCGGAATTCGTAGAGGGTGAGCTGGCCAGATaGGCACTCCGTCATAAATTTCTTATACCACTGATGGCACTCGGT | + |
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Preference number: 5 (lower is better) Translates to: ETKELAEFVEGELAR*ALRHKFLIPLMALG Trigger: ACCGAGTGCCATCAGTGGTATAAGAAATTTATGACGGAGTGCCCATCTGGCCAGCTCACCCTCTACGAATTCCGCCAGTTCTTTGGTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS TCA 90 bp | GTTGAAGTCAAAGGTCTCGAACATCTGTTCCACATACTGGCTGGCTaGGGGGCTCAGGTTCTTGAGACCAAAGAACTGGCGGAATTCGTA | + |
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Preference number: 5 (lower is better) Translates to: VEVKGLEHLFHILAG*GAQVLETKELAEFV Trigger: TACGAATTCCGCCAGTTCTTTGGTCTCAAGAACCTGAGCCCCTCAGCCAGCCAGTATGTGGAACAGATGTTCGAGACCTTTGACTTCAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS GCA 72 bp | TCAACCCGCAGCCTCCGCTGCCAGGTCGCCGGTGCCTaGCTCCTCGTGTTCGCCGTTCTGGAGTCTGCGCAC | + |
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Preference number: 6 (lower is better) Translates to: STRSLRCQVAGA*LLVFAVLESAH Trigger: GTGCGCAGACTCCAGAACGGCGAACACGAGGAGGCAGGCACCGGCGACCTGGCAGCGGAGGCTGCGGGTTGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS GCA 72 bp | CGGTGCCTGCCTCCTCGTGTTCGCCGTTCTGGAGTCTaGGCACGATGCCGGTCAAGTCCAGGCTTCGGGTCA | + |
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Preference number: 6 (lower is better) Translates to: RCLPPRVRRSGV*ARCRSSPGFGS Trigger: TGACCCGAAGCCTGGACTTGACCGGCATCGTGCGCAGACTCCAGAACGGCGAACACGAGGAGGCAGGCACCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS CCA 72 bp | AGGTCGCCGGTGCCTGCCTCCTCGTGTTCGCCGTTCTaGAGTCTGCGCACGATGCCGGTCAAGTCCAGGCTT | + |
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Preference number: 6 (lower is better) Translates to: RSPVPASSCSPF*SLRTMPVKSRL Trigger: AAGCCTGGACTTGACCGGCATCGTGCGCAGACTCCAGAACGGCGAACACGAGGAGGCAGGCACCGGCGACCT 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS GCA 72 bp | CCTCCTCGTGTTCGCCGTTCTGGAGTCTGCGCACGATaGCGGTCAAGTCCAGGCTTCGGGTCAGCGTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: PPRVRRSGVCAR*RSSPGFGSACP Trigger: TGGACACGCTGACCCGAAGCCTGGACTTGACCGGCATCGTGCGCAGACTCCAGAACGGCGAACACGAGGAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS GCA 72 bp | CTTCGGGTCAGCGTGTCCAGGAGCATCTGGTCCTTCTaGACACCTTCCATGAACTCCTCCAGGGACAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: LRVSVSRSIWSF*TPSMNSSRDSS Trigger: GGAACTGTCCCTGGAGGAGTTCATGGAAGGTGTGCAGAAGGACCAGATGCTCCTGGACACGCTGACCCGAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS CCA 72 bp | AAGTCCAGGCTTCGGGTCAGCGTGTCCAGGAGCATCTaGTCCTTCTGCACACCTTCCATGAACTCCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: KSRLRVSVSRSI*SFCTPSMNSSR Trigger: CCTGGAGGAGTTCATGGAAGGTGTGCAGAAGGACCAGATGCTCCTGGACACGCTGACCCGAAGCCTGGACTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS CAA 72 bp | TCCAGGGACAGTTCCCCATCCCCGTTGATGTCGATCTaGGCAAACACGGTATCTGTGAATTCCTCGGCACTC | + |
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Preference number: 6 (lower is better) Translates to: SRDSSPSPLMSI*ANTVSVNSSAL Trigger: GAGTGCCGAGGAATTCACAGATACCGTGTTTGCCAAGATCGACATCAACGGGGATGGGGAACTGTCCCTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS TCA 72 bp | CCAGATGGGCACTCCGTCATAAATTTCTTATACCACTaGTGGCACTCGGTGCTGCTCAGCTCTTCCACGGAC | + |
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Preference number: 6 (lower is better) Translates to: PDGHSVINFLYH*WHSVLLSSSTD Trigger: GTCCGTGGAAGAGCTGAGCAGCACCGAGTGCCATCAGTGGTATAAGAAATTTATGACGGAGTGCCCATCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS TCA 72 bp | AAAGGTCTCGAACATCTGTTCCACATACTGGCTGGCTaGGGGGCTCAGGTTCTTGAGACCAAAGAACTGGCG | + |
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Preference number: 6 (lower is better) Translates to: KGLEHLFHILAG*GAQVLETKELA Trigger: CGCCAGTTCTTTGGTCTCAAGAACCTGAGCCCCTCAGCCAGCCAGTATGTGGAACAGATGTTCGAGACCTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS TCA 72 bp | TGTCTATGCACCCGTTGCCGTCGACGTCGTAGAGCTTaGAATACCAGCGCAACTTCTGTTCCACTTTGCCCT | + |
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Preference number: 6 (lower is better) Translates to: CLCTRCRRRRRA*NTSATSVPLCP Trigger: AGGGCAAAGTGGAACAGAAGTTGCGCTGGTATTTCAAGCTCTACGACGTCGACGGCAACGGGTGCATAGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS CAA 90 bp | ATGAACTCCTCCAGGGACAGTTCCCCATCCCCGTTGATGTCGATCTaGGCAAACACGGTATCTGTGAATTCCTCGGCACTCATGGATGAG | + |
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Preference number: 6 (lower is better) Translates to: MNSSRDSSPSPLMSI*ANTVSVNSSALMDE Trigger: CTCATCCATGAGTGCCGAGGAATTCACAGATACCGTGTTTGCCAAGATCGACATCAACGGGGATGGGGAACTGTCCCTGGAGGAGTTCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS CCA 72 bp | GAACTGGCGGAATTCGTAGAGGGTGAGCTGGCCAGATaGGCACTCCGTCATAAATTTCTTATACCACTGATG | + |
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Preference number: 6 (lower is better) Translates to: ELAEFVEGELAR*ALRHKFLIPLM Trigger: CATCAGTGGTATAAGAAATTTATGACGGAGTGCCCATCTGGCCAGCTCACCCTCTACGAATTCCGCCAGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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| CDS CCA 72 bp | TTGAAGTCAAAGGTCTCGAACATCTGTTCCACATACTaGCTGGCTGAGGGGCTCAGGTTCTTGAGACCAAAG | + |
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Preference number: 6 (lower is better) Translates to: LKSKVSNICSTY*LAEGLRFLRPK Trigger: CTTTGGTCTCAAGAACCTGAGCCCCTCAGCCAGCCAGTATGTGGAACAGATGTTCGAGACCTTTGACTTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059348.9 |
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