Pregenerated sensors for GTF2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028271Ensembl transcript IDs: ENSMUST00000029938.10
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGTGTaGCTATGTACAAAGTTCCATATTCCATGTACATTA | + |
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Preference number: 3 (lower is better) Translates to: SFFLIKGSTSTV*LCTKFHIPCTL Trigger: TAATGTACATGGAATATGGAACTTTGTACATAGCCACACAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR GCA 90 bp | TCTGGAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGTGCAGAGATCGGGCTCCTaGCAGGAACCAAGTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: SGMGTISFFLIKGSTSTVQRSGS*QEPSPA Trigger: AGCTGGACTTGGTTCCTGGCAGGAGCCCGATCTCTG...CACAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTCCAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR GCA 90 bp | GAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGTGTGGCCATGTAAATAGCTGCTaGCGCCACAGAGATCGGGCT | + |
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Preference number: 4 (lower is better) Translates to: EWVPSPFSSLKAQPALCGHVNSC*RHRDRA Trigger: AGCCCGATCTCTGTGGCGGCAGCAGCTATTTACATG...GCCACACAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR CCA 90 bp | GCTCTGGAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGCGGACATGTGACTCTTaGGAGAGCATCCAAACGGCT | + |
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Preference number: 4 (lower is better) Translates to: ALEWVPSPFSSLKAQPALRTCDS*ESIQTA Trigger: AGCCGTTTGGATGCTCTCCCAAGAGTCACATGTCCG...CAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTCCAGAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR TCA 90 bp | GAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGTGTGGCGATGATTCGGACATGTaGCTCTTGGGAGAGCATCCA | + |
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Preference number: 4 (lower is better) Translates to: EWVPSPFSSLKAQPALCGDDSDM*LLGEHP Trigger: TGGATGCTCTCCCAAGAGTCACATGTCCGAATCATC...GCCACACAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR TCA 90 bp | TCTGGAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGTGGTCAAACTTGAAGTCTaGAGGGAAGAGATCCGGAGC | + |
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Preference number: 4 (lower is better) Translates to: SGMGTISFFLIKGSTSTVVKLEV*REEIRS Trigger: GCTCCGGATCTCTTCCCTTCAGACTTCAAGTTTGAC...CACAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTCCAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR TCA 90 bp | CTGGAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGTGTCTGGGGTGTCAAACTTaGAGTCTGAAGGGAAGAGAT | + |
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Preference number: 4 (lower is better) Translates to: LEWVPSPFSSLKAQPALCLGCQT*SLKGRD Trigger: ATCTCTTCCCTTCAGACTTCAAGTTTGACACCCCAG...ACACAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTCCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR GCA 90 bp | CTGGAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGTGTCAGCTCCTGTACCCTTaGCAATCATGGTGGACAAAT | + |
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Preference number: 4 (lower is better) Translates to: LEWVPSPFSSLKAQPALCQLLYP*QSWWTN Trigger: ATTTGTCCACCATGATTGGCAAGGGTACAGGAGCTG...ACACAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTCCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR CCA 90 bp | GAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGTGTGGCCCTTGCCAATCATGGTaGACAAATCTCCATCACTCA | + |
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Preference number: 4 (lower is better) Translates to: EWVPSPFSSLKAQPALCGPCQSW*TNLHHS Trigger: TGAGTGATGGAGATTTGTCCACCATGATTGGCAAGG...GCCACACAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR CCA 90 bp | ATTAAAGGCTCAACCAGCACTGTGTGGCTATGTACAAAGTTCCATATTCCATGTCCATCTGCACTTGCTTaGGGAGGCAAAGGTTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: IKGSTSTVWLCTKFHIPCPSALA*GGKGWS Trigger: GCTCCAACCTTTGCCTCCCCAAGCAAGTGCAGATGG...ACATGGAATATGGAACTTTGTACATAGCCACACAGTGCTGGTTGAGCCTTTAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR TCA 90 bp | ACCAGCACTGTGTGGCTATGTACAAAGTTCCATATTCCATGTACATTAAGAGTGTGTTCGCTTCTCAGCTaGAGCCTGGGAAGCCATGTA | + |
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Preference number: 4 (lower is better) Translates to: TSTVWLCTKFHIPCTLRVCSLLS*SLGSHV Trigger: TACATGGCTTCCCAGGCTTCAGCTGAGAAGCGAACA...CACTCTTAATGTACATGGAATATGGAACTTTGTACATAGCCACACAGTGCTGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR GCA 90 bp | CTGGAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGTGTAAACTCATCAAAACTTaGAGCTCCTGTACCCTTGCC | + |
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Preference number: 4 (lower is better) Translates to: LEWVPSPFSSLKAQPALCKLIKT*SSCTLA Trigger: GGCAAGGGTACAGGAGCTGCAAGTTTTGATGAGTTT...ACACAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTCCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR GCA 90 bp | ACCAGCACTGTGTGGCTATGTACAAAGTTCCATATTCCATGTACATTAAGAGTGTGTGTAGCTGCCATCTaGACTTGCTTGGGGAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: TSTVWLCTKFHIPCTLRVCVAAI*TCLGRQ Trigger: TTGCCTCCCCAAGCAAGTGCAGATGGCAGCTACACA...CACTCTTAATGTACATGGAATATGGAACTTTGTACATAGCCACACAGTGCTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR CCA 90 bp | GCTCTGGAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGGTCTCCAACTCTAGATaGGTCTTTTGTTGCTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: ALEWVPSPFSSLKAQPALVSNSR*VFCCFV Trigger: GACAAAGCAACAAAAGACCCATCTAGAGTTGGAGAC...CAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTCCAGAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR TCA 90 bp | GCTCTGGAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGTTGCTTTGTCATTGCTaGAAGTTCTCCATTCAGATC | + |
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Preference number: 4 (lower is better) Translates to: ALEWVPSPFSSLKAQPALLLCHC*KFSIQI Trigger: GATCTGAATGGAGAACTTTCAGCAATGACAAAGCAA...CAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTCCAGAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR GCA 90 bp | TCTGGAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGTGCGTGATTTCCTTGAATaGGTTCATCATTGCTCGATC | + |
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Preference number: 4 (lower is better) Translates to: SGMGTISFFLIKGSTSTVRDFLE*VHHCSI Trigger: GATCGAGCAATGATGAACGCATTCAAGGAAATCACG...CACAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTCCAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR GCA 90 bp | AACCAGCACTGTGTGGCTATGTACAAAGTTCCATATTCCATGTACATTAAGAGTAGCCATGTAAATAGCTaGTGCCGCCACAGAGATCGG | + |
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Preference number: 4 (lower is better) Translates to: NQHCVAMYKVPYSMYIKSSHVNS*CRHRDR Trigger: CCGATCTCTGTGGCGGCAGCAGCTATTTACATGGCT...ACTCTTAATGTACATGGAATATGGAACTTTGTACATAGCCACACAGTGCTGGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR TCA 90 bp | TCTGGAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGTGAAAATTGCATCTGGATaGTTCGGACATGTGACTCTT | + |
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Preference number: 4 (lower is better) Translates to: SGMGTISFFLIKGSTSTVKIASG*FGHVTL Trigger: AAGAGTCACATGTCCGAATCATCCAGATGCAATTTT...CACAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTCCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR TCA 90 bp | CTGGAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGTGTATTGTTCTCCGGTTCTaGTACTTAGAATTGCCAAAC | + |
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Preference number: 4 (lower is better) Translates to: LEWVPSPFSSLKAQPALCIVLRF*YLELPN Trigger: GTTTGGCAATTCTAAGTATCAGAACCGGAGAACAAT...ACACAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTCCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR CCA 90 bp | AGGCTCAACCAGCACTGTGTGGCTATGTACAAAGTTCCATATTCCATGTACATTTACCCTTGCCAATCATaGTGGACAAATCTCCATCAC | + |
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Preference number: 4 (lower is better) Translates to: RLNQHCVAMYKVPYSMYIYPCQS*WTNLHH Trigger: GTGATGGAGATTTGTCCACCATGATTGGCAAGGGTA...AATGTACATGGAATATGGAACTTTGTACATAGCCACACAGTGCTGGTTGAGCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR GCA 90 bp | AACCAGCACTGTGTGGCTATGTACAAAGTTCCATATTCCATGTACATTAAGAGTCCCTTCAGGCTCTTCTaGTCATACACTTGCTTGAAT | + |
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Preference number: 4 (lower is better) Translates to: NQHCVAMYKVPYSMYIKSPFRLF*SYTCLN Trigger: ATTCAAGCAAGTGTATGAGCAGAAGAGCCTGAAGGG...ACTCTTAATGTACATGGAATATGGAACTTTGTACATAGCCACACAGTGCTGGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR GCA 90 bp | AGGCTCAACCAGCACTGTGTGGCTATGTACAAAGTTCCATATTCCATGTACATTAGATGGGTCTTTTGTTaGTTTGTCATTGCTGAAAGT | + |
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Preference number: 4 (lower is better) Translates to: RLNQHCVAMYKVPYSMYIRWVFC*FVIAES Trigger: ACTTTCAGCAATGACAAAGCAACAAAAGACCCATCT...AATGTACATGGAATATGGAACTTTGTACATAGCCACACAGTGCTGGTTGAGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS GCA 90 bp | CGCCACAGAGATCGGGCTCCTGCCAGGAACCAAGTCCAGCTCCACTaGCTTGCGGGCTATGTGTGTAGCTGCCATCTGCACTTGCTTGGG | + |
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Preference number: 5 (lower is better) Translates to: RHRDRAPARNQVQLH*LAGYVCSCHLHLLG Trigger: CCCAAGCAAGTGCAGATGGCAGCTACACACATAGCCCGCAAGGCAGTGGAGCTGGACTTGGTTCCTGGCAGGAGCCCGATCTCTGTGGCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS GCA 90 bp | AGCTCCACTGCCTTGCGGGCTATGTGTGTAGCTGCCATCTGCACTTaGTTGGGGAGGCAAAGGTTGGAGCAGAACCTGGACATGAAGTCC | + |
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Preference number: 5 (lower is better) Translates to: SSTALRAMCVAAICT*LGRQRLEQNLDMKS Trigger: GGACTTCATGTCCAGGTTCTGCTCCAACCTTTGCCTCCCCAAGCAAGTGCAGATGGCAGCTACACACATAGCCCGCAAGGCAGTGGAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS GCA 90 bp | AAGTCCAGCTCCACTGCCTTGCGGGCTATGTGTGTAGCTGCCATCTaGACTTGCTTGGGGAGGCAAAGGTTGGAGCAGAACCTGGACATG | + |
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Preference number: 5 (lower is better) Translates to: KSSSTALRAMCVAAI*TCLGRQRLEQNLDM Trigger: CATGTCCAGGTTCTGCTCCAACCTTTGCCTCCCCAAGCAAGTGCAGATGGCAGCTACACACATAGCCCGCAAGGCAGTGGAGCTGGACTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS GCA 90 bp | AGGAACCAAGTCCAGCTCCACTGCCTTGCGGGCTATGTGTGTAGCTaGCATCTGCACTTGCTTGGGGAGGCAAAGGTTGGAGCAGAACCT | + |
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Preference number: 5 (lower is better) Translates to: RNQVQLHCLAGYVCS*HLHLLGEAKVGAEP Trigger: AGGTTCTGCTCCAACCTTTGCCTCCCCAAGCAAGTGCAGATGGCAGCTACACACATAGCCCGCAAGGCAGTGGAGCTGGACTTGGTTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS TCA 90 bp | AACACCAGCAATATCCCCGATTTCTTTCTGTGTTCGCTTCTCAGCTaGAGCCTGGGAAGCCATGTAAATAGCTGCTGCCGCCACAGAGAT | + |
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Preference number: 5 (lower is better) Translates to: NTSNIPDFFLCSLLS*SLGSHVNSCCRHRD Trigger: ATCTCTGTGGCGGCAGCAGCTATTTACATGGCTTCCCAGGCTTCAGCTGAGAAGCGAACACAGAAAGAAATCGGGGATATTGCTGGTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS GCA 90 bp | GCGAGGGAGGTTGATTCTGTCCGCCATGGTCGTGATTTCCTTGAATaGGTTCATCATTGCTCGATCAGAGCTACTCATTGTTCTCCGGTT | + |
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Preference number: 5 (lower is better) Translates to: AREVDSVRHGRDFLE*VHHCSIRATHCSPV Trigger: AACCGGAGAACAATGAGTAGCTCTGATCGAGCAATGATGAACGCATTCAAGGAAATCACGACCATGGCGGACAGAATCAACCTCCCTCGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS GCA 90 bp | GATTCTGTCCGCCATGGTCGTGATTTCCTTGAATGCGTTCATCATTaGTCGATCAGAGCTACTCATTGTTCTCCGGTTCTGATACTTAGA | + |
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Preference number: 5 (lower is better) Translates to: DSVRHGRDFLECVHH*SIRATHCSPVLILR Trigger: TCTAAGTATCAGAACCGGAGAACAATGAGTAGCTCTGATCGAGCAATGATGAACGCATTCAAGGAAATCACGACCATGGCGGACAGAATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR CAA 90 bp | GCTCTGGAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGGGGTCTTTTGTTGCTTaGTCATTGCTGAAAGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: ALEWVPSPFSSLKAQPALGSFVA*SLLKVL Trigger: GAGAACTTTCAGCAATGACAAAGCAACAAAAGACCC...CAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTCCAGAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR CAA 90 bp | ATTAAAGGCTCAACCAGCACTGTGTGGCTATGTACAAAGTTCCATATTCCATGTATATTGCGAGGGAGGTaGATTCTGTCCGCCATGGTC | + |
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Preference number: 5 (lower is better) Translates to: IKGSTSTVWLCTKFHIPCILRGR*ILSAMV Trigger: GACCATGGCGGACAGAATCAACCTCCCTCGCAATAT...ACATGGAATATGGAACTTTGTACATAGCCACACAGTGCTGGTTGAGCCTTTAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR CAA 90 bp | AACCAGCACTGTGTGGCTATGTACAAAGTTCCATATTCCATGTACATTAAGAGTAGCTGCCATCTGCACTaGCTTGGGGAGGCAAAGGTT | + |
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Preference number: 5 (lower is better) Translates to: NQHCVAMYKVPYSMYIKSSCHLH*LGEAKV Trigger: AACCTTTGCCTCCCCAAGCAAGTGCAGATGGCAGCT...ACTCTTAATGTACATGGAATATGGAACTTTGTACATAGCCACACAGTGCTGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS TCA 90 bp | GCGTTCATCATTGCTCGATCAGAGCTACTCATTGTTCTCCGGTTCTaGTACTTAGAATTGCCAAACTCATCAAAACTTGCAGCTCCTGTA | + |
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Preference number: 5 (lower is better) Translates to: AFIIARSELLIVLRF*YLELPNSSKLAAPV Trigger: TACAGGAGCTGCAAGTTTTGATGAGTTTGGCAATTCTAAGTATCAGAACCGGAGAACAATGAGTAGCTCTGATCGAGCAATGATGAACGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS GCA 90 bp | ATCGCGTCATTAGCTCTGCCCTTCAGGCTCTTCTGCTCATACACTTaGTTGAATAAATTATTTGTTCGATCAACTATATTGCGAGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: IASLALPFRLFCSYT*LNKLFVRSTILRGR Trigger: CCTCCCTCGCAATATAGTTGATCGAACAAATAATTTATTCAAGCAAGTGTATGAGCAGAAGAGCCTGAAGGGCAGAGCTAATGACGCGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR CAA 90 bp | TCTGGAATGGGTACCATCTCCTTTTTCCTCATTAAAGGCTCAACCAGCACTGTGAGTCTTCAACTAAAATaGCATCTGGATGATTCGGAC | + |
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Preference number: 5 (lower is better) Translates to: SGMGTISFFLIKGSTSTVSLQLK*HLDDSD Trigger: GTCCGAATCATCCAGATGCAATTTTAGTTGAAGACT...CACAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTCCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS GCA 90 bp | CAAGCAGAGGCTATCGCGTCATTAGCTCTGCCCTTCAGGCTCTTCTaGTCATACACTTGCTTGAATAAATTATTTGTTCGATCAACTATA | + |
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Preference number: 5 (lower is better) Translates to: QAEAIASLALPFRLF*SYTCLNKLFVRSTI Trigger: TATAGTTGATCGAACAAATAATTTATTCAAGCAAGTGTATGAGCAGAAGAGCCTGAAGGGCAGAGCTAATGACGCGATAGCCTCTGCTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR CAA 90 bp | ATTAAAGGCTCAACCAGCACTGTGTGGCTATGTACAAAGTTCCATATTCCATGTATGGTCGTGATTTCCTaGAATGCGTTCATCATTGCT | + |
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Preference number: 5 (lower is better) Translates to: IKGSTSTVWLCTKFHIPCMVVIS*NAFIIA Trigger: AGCAATGATGAACGCATTCAAGGAAATCACGACCAT...ACATGGAATATGGAACTTTGTACATAGCCACACAGTGCTGGTTGAGCCTTTAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS-3UTR CAA 90 bp | AACCAGCACTGTGTGGCTATGTACAAAGTTCCATATTCCATGTACATTAAGAGTTTTGTTGCTTTGTCATaGCTGAAAGTTCTCCATTCA | + |
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Preference number: 5 (lower is better) Translates to: NQHCVAMYKVPYSMYIKSFVALS*LKVLHS Trigger: TGAATGGAGAACTTTCAGCAATGACAAAGCAACAAA...ACTCTTAATGTACATGGAATATGGAACTTTGTACATAGCCACACAGTGCTGGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS CAA 90 bp | TCCACTGCCTTGCGGGCTATGTGTGTAGCTGCCATCTGCACTTGCTaGGGGAGGCAAAGGTTGGAGCAGAACCTGGACATGAAGTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: STALRAMCVAAICTC*GRQRLEQNLDMKSP Trigger: TGGGGACTTCATGTCCAGGTTCTGCTCCAACCTTTGCCTCCCCAAGCAAGTGCAGATGGCAGCTACACACATAGCCCGCAAGGCAGTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS GCA 72 bp | TCCACTGCCTTGCGGGCTATGTGTGTAGCTGCCATCTaGACTTGCTTGGGGAGGCAAAGGTTGGAGCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: STALRAMCVAAI*TCLGRQRLEQN Trigger: GTTCTGCTCCAACCTTTGCCTCCCCAAGCAAGTGCAGATGGCAGCTACACACATAGCCCGCAAGGCAGTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS CAA 90 bp | GCTATGTGTGTAGCTGCCATCTGCACTTGCTTGGGGAGGCAAAGGTaGGAGCAGAACCTGGACATGAAGTCCCCAGTTGTGATCAGATCC | + |
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Preference number: 6 (lower is better) Translates to: AMCVAAICTCLGRQR*EQNLDMKSPVVIRS Trigger: GGATCTGATCACAACTGGGGACTTCATGTCCAGGTTCTGCTCCAACCTTTGCCTCCCCAAGCAAGTGCAGATGGCAGCTACACACATAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS CAA 72 bp | TATAGCTGGGGTAATTTGTCCACTGGGGTGTCAAACTaGAAGTCTGAAGGGAAGAGATCCGGAGCCCGAGGG | + |
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Preference number: 6 (lower is better) Translates to: YSWGNLSTGVSN*KSEGKRSGARG Trigger: CCCTCGGGCTCCGGATCTCTTCCCTTCAGACTTCAAGTTTGACACCCCAGTGGACAAATTACCCCAGCTATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS TCA 72 bp | AATATCCCCGATTTCTTTCTGTGTTCGCTTCTCAGCTaGAGCCTGGGAAGCCATGTAAATAGCTGCTGCCGC | + |
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Preference number: 6 (lower is better) Translates to: NIPDFFLCSLLS*SLGSHVNSCCR Trigger: GCGGCAGCAGCTATTTACATGGCTTCCCAGGCTTCAGCTGAGAAGCGAACACAGAAAGAAATCGGGGATATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS CAA 72 bp | GGGAGGTTGATTCTGTCCGCCATGGTCGTGATTTCCTaGAATGCGTTCATCATTGCTCGATCAGAGCTACTC | + |
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Preference number: 6 (lower is better) Translates to: GRLILSAMVVIS*NAFIIARSELL Trigger: GAGTAGCTCTGATCGAGCAATGATGAACGCATTCAAGGAAATCACGACCATGGCGGACAGAATCAACCTCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS GCA 72 bp | CGCCATGGTCGTGATTTCCTTGAATGCGTTCATCATTaGTCGATCAGAGCTACTCATTGTTCTCCGGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: RHGRDFLECVHH*SIRATHCSPVL Trigger: CAGAACCGGAGAACAATGAGTAGCTCTGATCGAGCAATGATGAACGCATTCAAGGAAATCACGACCATGGCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS CAA 90 bp | ATATTGCGAGGGAGGTTGATTCTGTCCGCCATGGTCGTGATTTCCTaGAATGCGTTCATCATTGCTCGATCAGAGCTACTCATTGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: ILRGRLILSAMVVIS*NAFIIARSELLIVL Trigger: GAGAACAATGAGTAGCTCTGATCGAGCAATGATGAACGCATTCAAGGAAATCACGACCATGGCGGACAGAATCAACCTCCCTCGCAATAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS CAA 90 bp | TCGAGACACAGCACATATTTCTTTAAATGTCCTGGGAACGCCTTCTaGTCTACAGGCGATGTACAGACAAGCAGAGGCTATCGCGTCATT | + |
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Preference number: 6 (lower is better) Translates to: SRHSTYFFKCPGNAF*STGDVQTSRGYRVI Trigger: AATGACGCGATAGCCTCTGCTTGTCTGTACATCGCCTGTAGACAAGAAGGCGTTCCCAGGACATTTAAAGAAATATGTGCTGTGTCTCGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS CCA 72 bp | CAAAACTTGCAGCTCCTGTACCCTTGCCAATCATGGTaGACAAATCTCCATCACTCAGAAGAGGATTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: QNLQLLYPCQSW*TNLHHSEEDSE Trigger: CTCAGAATCCTCTTCTGAGTGATGGAGATTTGTCCACCATGATTGGCAAGGGTACAGGAGCTGCAAGTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS GCA 72 bp | GTTGATTCTGTCCGCCATGGTCGTGATTTCCTTGAATaGGTTCATCATTGCTCGATCAGAGCTACTCATTGT | + |
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Preference number: 6 (lower is better) Translates to: VDSVRHGRDFLE*VHHCSIRATHC Trigger: ACAATGAGTAGCTCTGATCGAGCAATGATGAACGCATTCAAGGAAATCACGACCATGGCGGACAGAATCAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS CCA 72 bp | CATCAAAACTTGCAGCTCCTGTACCCTTGCCAATCATaGTGGACAAATCTCCATCACTCAGAAGAGGATTCT | + |
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Preference number: 6 (lower is better) Translates to: HQNLQLLYPCQS*WTNLHHSEEDS Trigger: AGAATCCTCTTCTGAGTGATGGAGATTTGTCCACCATGATTGGCAAGGGTACAGGAGCTGCAAGTTTTGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS CAA 72 bp | AGCACATATTTCTTTAAATGTCCTGGGAACGCCTTCTaGTCTACAGGCGATGTACAGACAAGCAGAGGCTAT | + |
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Preference number: 6 (lower is better) Translates to: STYFFKCPGNAF*STGDVQTSRGY Trigger: ATAGCCTCTGCTTGTCTGTACATCGCCTGTAGACAAGAAGGCGTTCCCAGGACATTTAAAGAAATATGTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS CAA 90 bp | GCGTCATTAGCTCTGCCCTTCAGGCTCTTCTGCTCATACACTTGCTaGAATAAATTATTTGTTCGATCAACTATATTGCGAGGGAGGTTG | + |
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Preference number: 6 (lower is better) Translates to: ASLALPFRLFCSYTC*NKLFVRSTILRGRL Trigger: CAACCTCCCTCGCAATATAGTTGATCGAACAAATAATTTATTCAAGCAAGTGTATGAGCAGAAGAGCCTGAAGGGCAGAGCTAATGACGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS CAA 90 bp | TGCTTGAATAAATTATTTGTTCGATCAACTATATTGCGAGGGAGGTaGATTCTGTCCGCCATGGTCGTGATTTCCTTGAATGCGTTCATC | + |
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Preference number: 6 (lower is better) Translates to: CLNKLFVRSTILRGR*ILSAMVVISLNAFI Trigger: GATGAACGCATTCAAGGAAATCACGACCATGGCGGACAGAATCAACCTCCCTCGCAATATAGTTGATCGAACAAATAATTTATTCAAGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS TCA 72 bp | ATTGCTCGATCAGAGCTACTCATTGTTCTCCGGTTCTaGTACTTAGAATTGCCAAACTCATCAAAACTTGCA | + |
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Preference number: 6 (lower is better) Translates to: IARSELLIVLRF*YLELPNSSKLA Trigger: TGCAAGTTTTGATGAGTTTGGCAATTCTAAGTATCAGAACCGGAGAACAATGAGTAGCTCTGATCGAGCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS CAA 72 bp | TCTCCAACTCTAGATGGGTCTTTTGTTGCTTTGTCATaGCTGAAAGTTCTCCATTCAGATCCCACATCAATA | + |
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Preference number: 6 (lower is better) Translates to: SPTLDGSFVALS*LKVLHSDPTSI Trigger: TATTGATGTGGGATCTGAATGGAGAACTTTCAGCAATGACAAAGCAACAAAAGACCCATCTAGAGTTGGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS CAA 72 bp | GCTCTGCCCTTCAGGCTCTTCTGCTCATACACTTGCTaGAATAAATTATTTGTTCGATCAACTATATTGCGA | + |
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Preference number: 6 (lower is better) Translates to: ALPFRLFCSYTC*NKLFVRSTILR Trigger: TCGCAATATAGTTGATCGAACAAATAATTTATTCAAGCAAGTGTATGAGCAGAAGAGCCTGAAGGGCAGAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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| CDS GCA 72 bp | TTAGCTCTGCCCTTCAGGCTCTTCTGCTCATACACTTaGTTGAATAAATTATTTGTTCGATCAACTATATTG | + |
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Preference number: 6 (lower is better) Translates to: LALPFRLFCSYT*LNKLFVRSTIL Trigger: CAATATAGTTGATCGAACAAATAATTTATTCAAGCAAGTGTATGAGCAGAAGAGCCTGAAGGGCAGAGCTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029938.10 |
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