Pregenerated sensors for GSX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035946Ensembl transcript IDs: ENSMUST00000040477.4, ENSMUST00000160104.3
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTCGTCCTCGGAGCGCGCATAATGCGCCTGGCTACCCACGCACTTaGAGCTTGTGTGATTGTTCCTCGAAGCGCCTTTCCCCTCCTTCT | + |
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Preference number: 1 (lower is better) Translates to: PRPRSAHNAPGYPRT*SLCDCSSKRLSPPS Trigger: AGAAGGAGGGGAAAGGCGCTTCGAGGAACAATCACACAAGCTGCAAGTGCGTGGGTAGCCAGGCGCATTATGCGCGCTCCGAGGACGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| 3UTR GCA 90 bp | GAGGAGGAGGGCAGGGTACCGGGAGCAGGTAGCAGAAGGAGCCTCTaGCTTTACAAGGGGGAAATCTCCTTGTCTTCGTTAGCCGAGGCA | + |
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Preference number: 1 (lower is better) Translates to: EEEGRVPGAGSRRSL*LYKGEISLSSLAEA Trigger: TGCCTCGGCTAACGAAGACAAGGAGATTTCCCCCTTGTAAAGGCAGAGGCTCCTTCTGCTACCTGCTCCCGGTACCCTGCCCTCCTCCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| 3UTR-3UTR TCA 90 bp | CTCGTCCTCGGAGCGCGCATAATGCGCCTGGCTACCCACGCACTTGCAGCTTGTCTTTGGTCCCTGTGCTaGTGGGGAGGAGGAGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: LVLGARIMRLATHALAACLWSLC*WGGGGQ Trigger: CTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAG...ACAAGCTGCAAGTGCGTGGGTAGCCAGGCGCATTATGCGCGCTCCGAGGACGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| 3UTR-3UTR TCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACCTTTGGTCCCTGTGCTaGTGGGGAGGAGGAGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYLWSLC*WGGGGQ Trigger: CTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAG...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| 3UTR CAA 90 bp | CCTCGGAGCGCGCATAATGCGCCTGGCTACCCACGCACTTGCAGCTaGTGTGATTGTTCCTCGAAGCGCCTTTCCCCTCCTTCTTGTGCT | + |
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Preference number: 2 (lower is better) Translates to: PRSAHNAPGYPRTCS*CDCSSKRLSPPSCA Trigger: AGCACAAGAAGGAGGGGAAAGGCGCTTCGAGGAACAATCACACAAGCTGCAAGTGCGTGGGTAGCCAGGCGCATTATGCGCGCTCCGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| 3UTR CAA 90 bp | GCAGGTAGCAGAAGGAGCCTCTGCCTTTACAAGGGGGAAATCTCCTaGTCTTCGTTAGCCGAGGCAGGGGACAAGGAGTCCTCGTCCTCG | + |
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Preference number: 2 (lower is better) Translates to: AGSRRSLCLYKGEIS*SSLAEAGDKESSSS Trigger: CGAGGACGAGGACTCCTTGTCCCCTGCCTCGGCTAACGAAGACAAGGAGATTTCCCCCTTGTAAAGGCAGAGGCTCCTTCTGCTACCTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| 3UTR-3UTR TCA 90 bp | AAGGGGGAAATCTCCTTGTCTTCGTTAGCCGAGGCAGGGGACAAGGAGTCCTCGCACTTGCAGCTTGTGTaGTTGTTCCTCGAAGCGCCT | + |
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Preference number: 2 (lower is better) Translates to: KGEISLSSLAEAGDKESSHLQLV*LFLEAP Trigger: AGGCGCTTCGAGGAACAATCACACAAGCTGCAAGTG...CGAGGACTCCTTGTCCCCTGCCTCGGCTAACGAAGACAAGGAGATTTCCCCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| 3UTR-3UTR TCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACCTTTTCCAGGTGGAATaGGGGCAATGGACTAGAACT | + |
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Preference number: 2 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYLFQVE*GQWTRT Trigger: AGTTCTAGTCCATTGCCCTCATTCCACCTGGAAAAG...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| 3UTR-3UTR TCA 90 bp | CTGCCTTTACAAGGGGGAAATCTCCTTGTCTTCGTTAGCCGAGGCAGGGGACAACTTTTCCAGGTGGAATaGGGGCAATGGACTAGAACT | + |
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Preference number: 2 (lower is better) Translates to: LPLQGGNLLVFVSRGRGQLFQVE*GQWTRT Trigger: AGTTCTAGTCCATTGCCCTCATTCCACCTGGAAAAG...TTGTCCCCTGCCTCGGCTAACGAAGACAAGGAGATTTCCCCCTTGTAAAGGCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| 3UTR-3UTR CAA 90 bp | AGGGCAGGGTACCGGGAGCAGGTAGCAGAAGGAGCCTCTGCCTTTACAAGGGGGCCTTTCCCCTCCTTCTaGTGCTTCACGCGACGGTTC | + |
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Preference number: 3 (lower is better) Translates to: RAGYREQVAEGASAFTRGPFPSF*CFTRRF Trigger: GAACCGTCGCGTGAAGCACAAGAAGGAGGGGAAAGG...CCCCCTTGTAAAGGCAGAGGCTCCTTCTGCTACCTGCTCCCGGTACCCTGCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| 3UTR-3UTR CAA 90 bp | CTCCTTGTCTTCGTTAGCCGAGGCAGGGGACAAGGAGTCCTCGTCCTCGGAGCGCAATGGACTAGAACTTaGGTCCCTGTGCTGATGGGG | + |
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Preference number: 3 (lower is better) Translates to: LLVFVSRGRGQGVLVLGAQWTRT*VPVLMG Trigger: CCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG...CGCTCCGAGGACGAGGACTCCTTGTCCCCTGCCTCGGCTAACGAAGACAAGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| 3UTR-3UTR CAA 90 bp | AGGGCAGGGTACCGGGAGCAGGTAGCAGAAGGAGCCTCTGCCTTTACAAGGGGGCCACGCACTTGCAGCTaGTGTGATTGTTCCTCGAAG | + |
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Preference number: 3 (lower is better) Translates to: RAGYREQVAEGASAFTRGPRTCS*CDCSSK Trigger: CTTCGAGGAACAATCACACAAGCTGCAAGTGCGTGG...CCCCCTTGTAAAGGCAGAGGCTCCTTCTGCTACCTGCTCCCGGTACCCTGCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| 3UTR GCA 72 bp | GGCAGGGTACCGGGAGCAGGTAGCAGAAGGAGCCTCTaGCTTTACAAGGGGGAAATCTCCTTGTCTTCGTTA | + |
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Preference number: 3 (lower is better) Translates to: GRVPGAGSRRSL*LYKGEISLSSL Trigger: TAACGAAGACAAGGAGATTTCCCCCTTGTAAAGGCAGAGGCTCCTTCTGCTACCTGCTCCCGGTACCCTGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS-3UTR TCA 90 bp | CGTCCTCGGAGCGCGCATAATGCGCCTGGCTACCCACGCACTTGCAGCTTGTGTAGTGCAGGTGCGAGGTaGCGCAAAGCGGGCACACGC | + |
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Preference number: 4 (lower is better) Translates to: RPRSAHNAPGYPRTCSLCSAGAR*RKAGTR Trigger: GCGTGTGCCCGCTTTGCGTCACCTCGCACCTGCACT...ACACAAGCTGCAAGTGCGTGGGTAGCCAGGCGCATTATGCGCGCTCCGAGGACG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS-3UTR TCA 90 bp | GAGGAGGAGGGCAGGGTACCGGGAGCAGGTAGCAGAAGGAGCCTCTGCCTTTACCGAGGGTGCGGGCCGTaGGGAGTCCTTGATGATGAG | + |
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Preference number: 4 (lower is better) Translates to: EEEGRVPGAGSRRSLCLYRGCGP*GVLDDE Trigger: CTCATCATCAAGGACTCCTCACGGCCCGCACCCTCG...GTAAAGGCAGAGGCTCCTTCTGCTACCTGCTCCCGGTACCCTGCCCTCCTCCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS-3UTR TCA 90 bp | GGGCAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGAGTGCAGGTGCGAGGTaGCGCAAAGCGGGCACACGC | + |
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Preference number: 4 (lower is better) Translates to: GQWTRTLVPVLMGRRRAGSAGAR*RKAGTR Trigger: GCGTGTGCCCGCTTTGCGTCACCTCGCACCTGCACT...CCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTGCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS-3UTR GCA 90 bp | AGGGCAGGGTACCGGGAGCAGGTAGCAGAAGGAGCCTCTGCCTTTACAAGGGGGAAATCCGGCCCTGGGTaGGATTCCGGCAGCGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: RAGYREQVAEGASAFTRGKSGPG*DSGSEG Trigger: ACCCTCGCTGCCGGAATCGCACCCAGGGCCGGATTT...CCCCCTTGTAAAGGCAGAGGCTCCTTCTGCTACCTGCTCCCGGTACCCTGCCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS-3UTR GCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACGGCGGCGCAGACAGGTaGGTGGTGCTGCGGGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYGGADR*VVLRVS Trigger: GGACACCCGCAGCACCACGCACCTGTCTGCGCCGCC...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR CCA 90 bp | GGGCAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGGCGCAGACAGGTGCGTaGTGCTGCGGGTGTCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: GQWTRTLVPVLMGRRRAGAQTGA*CCGCPR Trigger: TCTGGGACACCCGCAGCACCACGCACCTGTCTGCGC...CCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTGCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR GCA 90 bp | GGGCAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGAAATCCGGCCCTGGGTaGGATTCCGGCAGCGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: GQWTRTLVPVLMGRRRAGKSGPG*DSGSEG Trigger: ACCCTCGCTGCCGGAATCGCACCCAGGGCCGGATTT...CCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS-3UTR GCA 90 bp | GGGCAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGCGAGAGGAGTGCAGGTaGGAGGTGACGCAAAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: GQWTRTLVPVLMGRRRAGREECR*EVTQSG Trigger: CCCGCTTTGCGTCACCTCGCACCTGCACTCCTCTCG...CCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS-3UTR GCA 90 bp | GGGCAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGGTGGTGGTGATGGTGTaGGTGGCTCACCCGTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: GQWTRTLVPVLMGRRRAGVVVMV*VAHPWA Trigger: TGCCCACGGGTGAGCCACGCACACCATCACCACCAC...CCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR GCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACACAGGTGCGTGGTGCTaGGGGTGTCCCAGAGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYTGAWC*GCPRAA Trigger: GGCGGCTCTGGGACACCCGCAGCACCACGCACCTGT...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR CCA 90 bp | AGGGCAGGGTACCGGGAGCAGGTAGCAGAAGGAGCCTCTGCCTTTACAAGGGGGGAAGAAATCCGGCCCTaGGTGCGATTCCGGCAGCGA | + |
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Preference number: 4 (lower is better) Translates to: RAGYREQVAEGASAFTRGEEIRP*VRFRQR Trigger: TCGCTGCCGGAATCGCACCCAGGGCCGGATTTCTTC...CCCCCTTGTAAAGGCAGAGGCTCCTTCTGCTACCTGCTCCCGGTACCCTGCCCT 62% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS-3UTR CCA 90 bp | CGTCCTCGGAGCGCGCATAATGCGCCTGGCTACCCACGCACTTGCAGCTTGTGTCATTGGGTACCTGGCTaGTATCGGAGCCTCCCGTGG | + |
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Preference number: 4 (lower is better) Translates to: RPRSAHNAPGYPRTCSLCHWVPG*YRSLPW Trigger: CCACGGGAGGCTCCGATACCAGCCAGGTACCCAATG...ACACAAGCTGCAAGTGCGTGGGTAGCCAGGCGCATTATGCGCGCTCCGAGGACG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS-3UTR GCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACGGCGGGCGAGAGGAGTaGAGGTGCGAGGTGACGCAA | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYGGREE*RCEVTQ Trigger: TTGCGTCACCTCGCACCTGCACTCCTCTCGCCCGCC...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS-3UTR GCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACACCCGTGGGCAAAACTaGGCGTCCCCAGGAGCGGGA | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYTRGQN*ASPGAG Trigger: TCCCGCTCCTGGGGACGCGCAGTTTTGCCCACGGGT...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR GCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACCAGACAGGTGCGTGGTaGTGCGGGTGTCCCAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYQTGAW*CGCPRA Trigger: GGCTCTGGGACACCCGCAGCACCACGCACCTGTCTG...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR CCA 90 bp | GGGCAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGGAAGAAATCCGGCCCTaGGTGCGATTCCGGCAGCGA | + |
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Preference number: 4 (lower is better) Translates to: GQWTRTLVPVLMGRRRAGEEIRP*VRFRQR Trigger: TCGCTGCCGGAATCGCACCCAGGGCCGGATTTCTTC...CCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS-3UTR CCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACTGCGTGGCTCACCCGTaGGCAAAACTGCGCGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYCVAHP*AKLRVP Trigger: GGGGACGCGCAGTTTTGCCCACGGGTGAGCCACGCA...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR TCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACCGAGGGTGCGGGCCGTaGGGAGTCCTTGATGATGAG | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYRGCGP*GVLDDE Trigger: CTCATCATCAAGGACTCCTCACGGCCCGCACCCTCG...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS-3UTR TCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACGCATGCCCAGCGGGATaGAGAAATCCGGCCCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYACPAG*RNPALG Trigger: ACCCAGGGCCGGATTTCTTCATCCCGCTGGGCATGC...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS-3UTR GCA 90 bp | CCACGCACTTGCAGCTTGTGTGATTGTTCCTCGAAGCGCCTTTCCCCTCCTTCTTCCCGTGGGCAAAACTaGGCGTCCCCAGGAGCGGGA | + |
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Preference number: 4 (lower is better) Translates to: PRTCSLCDCSSKRLSPPSSRGQN*ASPGAG Trigger: TCCCGCTCCTGGGGACGCGCAGTTTTGCCCACGGGA...AGAAGGAGGGGAAAGGCGCTTCGAGGAACAATCACACAAGCTGCAAGTGCGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS-3UTR CCA 90 bp | GGGCAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGCATTGGGTACCTGGCTaGTATCGGAGCCTCCCATGG | + |
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Preference number: 4 (lower is better) Translates to: GQWTRTLVPVLMGRRRAGHWVPG*YRSLPW Trigger: CCATGGGAGGCTCCGATACCAGCCAGGTACCCAATG...CCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR TCA 90 bp | ACAAGGAGTCCTCGTCCTCGGAGCGCGCATAATGCGCCTGGCTACCCACGCACTGTCCTTGATGATGAGTaGGTCCACGTAGAAGGAGCG | + |
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Preference number: 4 (lower is better) Translates to: TRSPRPRSAHNAPGYPRTVLDDE*VHVEGA Trigger: CGCTCCTTCTACGTGGACTCACTCATCATCAAGGAC...AGTGCGTGGGTAGCCAGGCGCATTATGCGCGCTCCGAGGACGAGGACTCCTTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS-3UTR CCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACCCCATGGAGAGGCAGTaGAATCTCCGTGGGTCCGAC | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYPMERQ*NLRGSD Trigger: GTCGGACCCACGGAGATTCCACTGCCTCTCCATGGG...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR CCA 90 bp | GGGCAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTATCGGAGCCTCCCATaGAGAGGCAGTGGAATCTCC | + |
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Preference number: 4 (lower is better) Translates to: GQWTRTLVPVLMGRRRAGYRSLP*RGSGIS Trigger: GGAGATTCCACTGCCTCTCCATGGGAGGCTCCGATA...CCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTGCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR CCA 90 bp | CCACGCACTTGCAGCTTGTGTGATTGTTCCTCGAAGCGCCTTTCCCCTCCTTCTTATCGGAGCCTCCCGTaGGCAAAACTGCGCGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: PRTCSLCDCSSKRLSPPSYRSLP*AKLRVP Trigger: GGGGACGCGCAGTTTTGCCCACGGGAGGCTCCGATA...AGAAGGAGGGGAAAGGCGCTTCGAGGAACAATCACACAAGCTGCAAGTGCGTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS-3UTR TCA 90 bp | GGGCAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGCACTTGCAGCTTGTGTaGTTGTTCCTCGAAGCGCCT | + |
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Preference number: 4 (lower is better) Translates to: GQWTRTLVPVLMGRRRAGHLQLV*LFLEAP Trigger: AGGCGCTTCGAGGAACAATCACACAAGCTGCAAGTG...CCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR GCA 90 bp | CTGCCTTTACAAGGGGGAAATCTCCTTGTCTTCGTTAGCCGAGGCAGGGGACAACGAGAGGAGTGCAGGTaGGAGGTGACGCAAAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: LPLQGGNLLVFVSRGRGQREECR*EVTQSG Trigger: CCCGCTTTGCGTCACCTCGCACCTGCACTCCTCTCG...TTGTCCCCTGCCTCGGCTAACGAAGACAAGGAGATTTCCCCCTTGTAAAGGCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS-3UTR GCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACTCCAGCTCCAGGAGCTaGGTGCTGGTAAACGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYSSSRS*VLVNAV Trigger: GACAGCGTTTACCAGCACGCAGCTCCTGGAGCTGGA...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR CCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACTTGCCATTGGGTACCTaGCTGGTATCGGAGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYLPLGT*LVSEPP Trigger: GGGAGGCTCCGATACCAGCCAGGTACCCAATGGCAA...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS-3UTR CCA 90 bp | CTCGTCCTCGGAGCGCGCATAATGCGCCTGGCTACCCACGCACTTGCAGCTTGTTCATCCTTTTGCCATTaGGTACCTGGCTGGTATCGG | + |
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Preference number: 4 (lower is better) Translates to: LVLGARIMRLATHALAACSSFCH*VPGWYR Trigger: CCGATACCAGCCAGGTACCCAATGGCAAAAGGATGA...ACAAGCTGCAAGTGCGTGGGTAGCCAGGCGCATTATGCGCGCTCCGAGGACGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| 3UTR CAA 72 bp | GCGCATAATGCGCCTGGCTACCCACGCACTTGCAGCTaGTGTGATTGTTCCTCGAAGCGCCTTTCCCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: AHNAPGYPRTCS*CDCSSKRLSPP Trigger: AGGAGGGGAAAGGCGCTTCGAGGAACAATCACACAAGCTGCAAGTGCGTGGGTAGCCAGGCGCATTATGCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS-3UTR TCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACGTCCTTGATGATGAGTaGGTCCACGTAGAAGGAGCG | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYVLDDE*VHVEGA Trigger: CGCTCCTTCTACGTGGACTCACTCATCATCAAGGAC...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS-3UTR GCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACCTGTCCTCATCCTTTTaGCATTGGGTACCTGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYLSSSF*HWVPGW Trigger: CCAGCCAGGTACCCAATGGCAAAAGGATGAGGACAG...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR CCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACGCAGTGGAATCTCCGTaGGTCCGACATGTTGTAGGT | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYAVESP*VRHVVG Trigger: ACCTACAACATGTCGGACCCACGGAGATTCCACTGC...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| 3UTR CAA 72 bp | AGAAGGAGCCTCTGCCTTTACAAGGGGGAAATCTCCTaGTCTTCGTTAGCCGAGGCAGGGGACAAGGAGTCC | + |
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Preference number: 4 (lower is better) Translates to: RRSLCLYKGEIS*SSLAEAGDKES Trigger: GGACTCCTTGTCCCCTGCCTCGGCTAACGAAGACAAGGAGATTTCCCCCTTGTAAAGGCAGAGGCTCCTTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS-3UTR CCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACGGAGCGGGAGAGAACTaGCTTTTGAGCAAAGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYGAGEN*LLSKGR Trigger: TCTACCTTTGCTCAAAAGCCAGTTCTCTCCCGCTCC...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS-3UTR CCA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACTCATCCTTTTGCCATTaGGTACCTGGCTGGTATCGG | + |
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Preference number: 4 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYSSFCH*VPGWYR Trigger: CCGATACCAGCCAGGTACCCAATGGCAAAAGGATGA...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS-3UTR CCA 90 bp | CCACGCACTTGCAGCTTGTGTGATTGTTCCTCGAAGCGCCTTTCCCCTCCTTCTGGAGCGGGAGAGAACTaGCTTTTGAGCAAAGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: PRTCSLCDCSSKRLSPPSGAGEN*LLSKGR Trigger: TCTACCTTTGCTCAAAAGCCAGTTCTCTCCCGCTCC...AGAAGGAGGGGAAAGGCGCTTCGAGGAACAATCACACAAGCTGCAAGTGCGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS GCA 90 bp | AGCCGCCGCTGCCGCAGCTGCCGCCGCCGCCGCCGCGGCCGCCGCTaGAGCCGAGCCGGGCTGCTGGGGCTGGTGATGGTGATGATGATG | + |
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Preference number: 5 (lower is better) Translates to: SRRCRSCRRRRRGRR*SRAGLLGLVMVMMM Trigger: CATCATCATCACCATCACCAGCCCCAGCAGCCCGGCTCGGCTGCAGCGGCGGCCGCGGCGGCGGCGGCGGCAGCTGCGGCAGCGGCGGCT 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS GCA 90 bp | GTCCCCGTAGCTCCGCCACCAGCTCCTGCGGGCGGGCGAGAGGAGTaGAGGTGCGAGGTGACGCAAAGCGGGCACACGCAGAAAGCGCCG | + |
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Preference number: 5 (lower is better) Translates to: VPVAPPPAPAGGREE*RCEVTQSGHTQKAP Trigger: CGGCGCTTTCTGCGTGTGCCCGCTTTGCGTCACCTCGCACCTGCACTCCTCTCGCCCGCCCGCAGGAGCTGGTGGCGGAGCTACGGGGAC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS TCA 90 bp | CGCCACCAGCTCCTGCGGGCGGGCGAGAGGAGTGCAGGTGCGAGGTaGCGCAAAGCGGGCACACGCAGAAAGCGCCGCTTTTGCGGGACG | + |
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Preference number: 5 (lower is better) Translates to: RHQLLRAGERSAGAR*RKAGTRRKRRFCGT Trigger: CGTCCCGCAAAAGCGGCGCTTTCTGCGTGTGCCCGCTTTGCGTCACCTCGCACCTGCACTCCTCTCGCCCGCCCGCAGGAGCTGGTGGCG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS GCA 90 bp | AACGGGGACGGCATGCCCAGCGGGATGAAGAAATCCGGCCCTGGGTaGGATTCCGGCAGCGAGGGTGCGGGCCGTGAGGAGTCCTTGATG | + |
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Preference number: 5 (lower is better) Translates to: NGDGMPSGMKKSGPG*DSGSEGAGREESLM Trigger: CATCAAGGACTCCTCACGGCCCGCACCCTCGCTGCCGGAATCGCACCCAGGGCCGGATTTCTTCATCCCGCTGGGCATGCCGTCCCCGTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS TCA 90 bp | GCAGAAAGCGCCGCTTTTGCGGGACGGACAGCCAGGCCCGGACACTaGCATCACCAACGGGGACGGCATGCCCAGCGGGATGAAGAAATC | + |
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Preference number: 5 (lower is better) Translates to: AESAAFAGRTARPGH*HHQRGRHAQRDEEI Trigger: GATTTCTTCATCCCGCTGGGCATGCCGTCCCCGTTGGTGATGTCAGTGTCCGGGCCTGGCTGTCCGTCCCGCAAAAGCGGCGCTTTCTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS GCA 90 bp | CTGGTGATGGTGATGATGATGCTGTGGTGGGTGGTGGTGATGGTGTaGGTGGCTCACCCGTGGGCAAAACTGCGCGTCCCCAGGAGCGGG | + |
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Preference number: 5 (lower is better) Translates to: LVMVMMMLWWVVVMV*VAHPWAKLRVPRSG Trigger: CCCGCTCCTGGGGACGCGCAGTTTTGCCCACGGGTGAGCCACGCACACCATCACCACCACCCACCACAGCATCATCATCACCATCACCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS CCA 90 bp | CTGGCTGGTATCGGAGCCTCCCATGGAGAGGCAGTGGAATCTCCGTaGGTCCGACATGTTGTAGGTAGTGGCGGCGCAGACAGGTGCGTG | + |
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Preference number: 5 (lower is better) Translates to: LAGIGASHGEAVESP*VRHVVGSGGADRCV Trigger: CACGCACCTGTCTGCGCCGCCACTACCTACAACATGTCGGACCCACGGAGATTCCACTGCCTCTCCATGGGAGGCTCCGATACCAGCCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS CCA 90 bp | ATGATGCTGTGGTGGGTGGTGGTGATGGTGTGCGTGGCTCACCCGTaGGCAAAACTGCGCGTCCCCAGGAGCGGGAGAGAACTGGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: MMLWWVVVMVCVAHP*AKLRVPRSGRELAF Trigger: AAAAGCCAGTTCTCTCCCGCTCCTGGGGACGCGCAGTTTTGCCCACGGGTGAGCCACGCACACCATCACCACCACCCACCACAGCATCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR CAA 90 bp | CGTCCTCGGAGCGCGCATAATGCGCCTGGCTACCCACGCACTTGCAGCTTGTGTGGCCGTGAGGAGTCCTaGATGATGAGTGAGTCCACG | + |
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Preference number: 5 (lower is better) Translates to: RPRSAHNAPGYPRTCSLCGREES*MMSEST Trigger: CGTGGACTCACTCATCATCAAGGACTCCTCACGGCC...ACACAAGCTGCAAGTGCGTGGGTAGCCAGGCGCATTATGCGCGCTCCGAGGACG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS-3UTR CAA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACGGCCGTGAGGAGTCCTaGATGATGAGTGAGTCCACG | + |
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Preference number: 5 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYGREES*MMSEST Trigger: CGTGGACTCACTCATCATCAAGGACTCCTCACGGCC...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS-3UTR CAA 90 bp | GGGCAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGCTCATCCTTTTGCCATaGGGTACCTGGCTGGTATCG | + |
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Preference number: 5 (lower is better) Translates to: GQWTRTLVPVLMGRRRAGLILLP*GTWLVS Trigger: CGATACCAGCCAGGTACCCAATGGCAAAAGGATGAG...CCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR CAA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACCCTTTCCCCTCCTTCTaGTGCTTCACGCGACGGTTC | + |
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Preference number: 5 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYPFPSF*CFTRRF Trigger: GAACCGTCGCGTGAAGCACAAGAAGGAGGGGAAAGG...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR CAA 90 bp | GGGCAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGCCACGCACTTGCAGCTaGTGTGATTGTTCCTCGAAG | + |
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Preference number: 5 (lower is better) Translates to: GQWTRTLVPVLMGRRRAGPRTCS*CDCSSK Trigger: CTTCGAGGAACAATCACACAAGCTGCAAGTGCGTGG...CCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR CAA 90 bp | GGGCAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGAAGGGGGAAATCTCCTaGTCTTCGTTAGCCGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: GQWTRTLVPVLMGRRRAGKGEIS*SSLAEA Trigger: TGCCTCGGCTAACGAAGACAAGGAGATTTCCCCCTT...CCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTGCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR CAA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACGGAGAGAACTGGCTTTaGAGCAAAGGTAGAGCGCCG | + |
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Preference number: 5 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYGENWL*SKGRAP Trigger: CGGCGCTCTACCTTTGCTCAAAAGCCAGTTCTCTCC...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS-3UTR CAA 90 bp | CAATGGACTAGAACTTTGGTCCCTGTGCTGATGGGGAGGAGGAGGGCAGGGTACGCTGTCCTCATCCTTTaGCCATTGGGTACCTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: QWTRTLVPVLMGRRRAGYAVLIL*PLGTWL Trigger: CAGCCAGGTACCCAATGGCAAAAGGATGAGGACAGC...GTACCCTGCCCTCCTCCTCCCCATCAGCACAGGGACCAAAGTTCTAGTCCATTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS-3UTR CAA 90 bp | CTGCCTTTACAAGGGGGAAATCTCCTTGTCTTCGTTAGCCGAGGCAGGGGACAAGGAGAGAACTGGCTTTaGAGCAAAGGTAGAGCGCCG | + |
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Preference number: 5 (lower is better) Translates to: LPLQGGNLLVFVSRGRGQGENWL*SKGRAP Trigger: CGGCGCTCTACCTTTGCTCAAAAGCCAGTTCTCTCC...TTGTCCCCTGCCTCGGCTAACGAAGACAAGGAGATTTCCCCCTTGTAAAGGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160104.3 |
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| CDS GCA 72 bp | GCTCCGCCACCAGCTCCTGCGGGCGGGCGAGAGGAGTaGAGGTGCGAGGTGACGCAAAGCGGGCACACGCAG | + |
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Preference number: 6 (lower is better) Translates to: APPPAPAGGREE*RCEVTQSGHTQ Trigger: CTGCGTGTGCCCGCTTTGCGTCACCTCGCACCTGCACTCCTCTCGCCCGCCCGCAGGAGCTGGTGGCGGAGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS GCA 72 bp | GGCATGCCCAGCGGGATGAAGAAATCCGGCCCTGGGTaGGATTCCGGCAGCGAGGGTGCGGGCCGTGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: GMPSGMKKSGPG*DSGSEGAGREE Trigger: CTCCTCACGGCCCGCACCCTCGCTGCCGGAATCGCACCCAGGGCCGGATTTCTTCATCCCGCTGGGCATGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS TCA 72 bp | GCCGCTTTTGCGGGACGGACAGCCAGGCCCGGACACTaGCATCACCAACGGGGACGGCATGCCCAGCGGGAT | + |
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Preference number: 6 (lower is better) Translates to: AAFAGRTARPGH*HHQRGRHAQRD Trigger: ATCCCGCTGGGCATGCCGTCCCCGTTGGTGATGTCAGTGTCCGGGCCTGGCTGTCCGTCCCGCAAAAGCGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS TCA 72 bp | CTCCTGCGGGCGGGCGAGAGGAGTGCAGGTGCGAGGTaGCGCAAAGCGGGCACACGCAGAAAGCGCCGCTTT | + |
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Preference number: 6 (lower is better) Translates to: LLRAGERSAGAR*RKAGTRRKRRF Trigger: AAAGCGGCGCTTTCTGCGTGTGCCCGCTTTGCGTCACCTCGCACCTGCACTCCTCTCGCCCGCCCGCAGGAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS CAA 90 bp | AGGTGCGAGGTGACGCAAAGCGGGCACACGCAGAAAGCGCCGCTTTaGCGGGACGGACAGCCAGGCCCGGACACTGACATCACCAACGGG | + |
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Preference number: 6 (lower is better) Translates to: RCEVTQSGHTQKAPL*RDGQPGPDTDITNG Trigger: CCCGTTGGTGATGTCAGTGTCCGGGCCTGGCTGTCCGTCCCGCAAAAGCGGCGCTTTCTGCGTGTGCCCGCTTTGCGTCACCTCGCACCT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS TCA 72 bp | ACTGCGCGTCCCCAGGAGCGGGAGAGAACTGGCTTTTaGGCAAAGGTAGAGCGCCGGTGCCTCCAGCCACCC | + |
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Preference number: 6 (lower is better) Translates to: TARPQERERTGF*AKVERRCLQPP Trigger: GGGTGGCTGGAGGCACCGGCGCTCTACCTTTGCTCAAAAGCCAGTTCTCTCCCGCTCCTGGGGACGCGCAGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS CCA 72 bp | TGGTGGGTGGTGGTGATGGTGTGCGTGGCTCACCCGTaGGCAAAACTGCGCGTCCCCAGGAGCGGGAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: WWVVVMVCVAHP*AKLRVPRSGRE Trigger: TTCTCTCCCGCTCCTGGGGACGCGCAGTTTTGCCCACGGGTGAGCCACGCACACCATCACCACCACCCACCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS CAA 72 bp | GTGACGCAAAGCGGGCACACGCAGAAAGCGCCGCTTTaGCGGGACGGACAGCCAGGCCCGGACACTGACATC | + |
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Preference number: 6 (lower is better) Translates to: VTQSGHTQKAPL*RDGQPGPDTDI Trigger: GATGTCAGTGTCCGGGCCTGGCTGTCCGTCCCGCAAAAGCGGCGCTTTCTGCGTGTGCCCGCTTTGCGTCAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS CAA 72 bp | AACTGCGCGTCCCCAGGAGCGGGAGAGAACTGGCTTTaGAGCAAAGGTAGAGCGCCGGTGCCTCCAGCCACC | + |
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Preference number: 6 (lower is better) Translates to: NCASPGAGENWL*SKGRAPVPPAT Trigger: GGTGGCTGGAGGCACCGGCGCTCTACCTTTGCTCAAAAGCCAGTTCTCTCCCGCTCCTGGGGACGCGCAGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040477.4 ENSMUST00000160104.3 |
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| CDS CCA 72 bp | ATCGGAGCCTCCCATGGAGAGGCAGTGGAATCTCCGTaGGTCCGACATGTTGTAGGTAGTGGCGGCGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: IGASHGEAVESP*VRHVVGSGGAD Trigger: GTCTGCGCCGCCACTACCTACAACATGTCGGACCCACGGAGATTCCACTGCCTCTCCATGGGAGGCTCCGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS CCA 72 bp | ACGCTGTCCTCATCCTTTTGCCATTGGGTACCTGGCTaGTATCGGAGCCTCCCATGGAGAGGCAGTGGAATC | + |
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Preference number: 6 (lower is better) Translates to: TLSSSFCHWVPG*YRSLPWRGSGI Trigger: GATTCCACTGCCTCTCCATGGGAGGCTCCGATACCAGCCAGGTACCCAATGGCAAAAGGATGAGGACAGCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS CCA 72 bp | GTAAACGCTGTCCTCATCCTTTTGCCATTGGGTACCTaGCTGGTATCGGAGCCTCCCATGGAGAGGCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: VNAVLILLPLGT*LVSEPPMERQW Trigger: CCACTGCCTCTCCATGGGAGGCTCCGATACCAGCCAGGTACCCAATGGCAAAAGGATGAGGACAGCGTTTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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| CDS CAA 72 bp | TGCGTGCTGGTAAACGCTGTCCTCATCCTTTTGCCATaGGGTACCTGGCTGGTATCGGAGCCTCCCATGGAG | + |
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Preference number: 6 (lower is better) Translates to: CVLVNAVLILLP*GTWLVSEPPME Trigger: CTCCATGGGAGGCTCCGATACCAGCCAGGTACCCAATGGCAAAAGGATGAGGACAGCGTTTACCAGCACGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040477.4 |
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