Pregenerated sensors for GSX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053129Ensembl transcript IDs: ENSMUST00000065382.6
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGGAGAGAATAGTGGAACCGAGGAAGCTTGAACCAGCCCAGAGTTaGCAGGCGAAGAGGCGCTGGCGGTCAGCAAGGCGCTGTGCTCCG | + |
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Preference number: 1 (lower is better) Translates to: KERIVEPRKLEPAQS*QAKRRWRSARRCAP Trigger: CGGAGCACAGCGCCTTGCTGACCGCCAGCGCCTCTTCGCCTGCCAACTCTGGGCTGGTTCAAGCTTCCTCGGTTCCACTATTCTCTCCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR TCA 90 bp | GAGACAGTTCTCTCTGCTAGGGGGACTTCTTCGAACAGCAAGACCTaGTCCCTGTTTAAGGGACAAACGGACAGAAGGGAGAGACTTCCT | + |
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Preference number: 1 (lower is better) Translates to: ETVLSARGTSSNSKT*SLFKGQTDRRERLP Trigger: AGGAAGTCTCTCCCTTCTGTCCGTTTGTCCCTTAAACAGGGATCAGGTCTTGCTGTTCGAAGAAGTCCCCCTAGCAGAGAGAACTGTCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR CAA 90 bp | TGCCTAAAGCTGCGCACCACCGCAAAGCCCAACGAAATCCGTCGGTaGGCCAGCGGGTGCCTGGGGACCAGTGCGGGAAGGGTCGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: CLKLRTTAKPNEIRR*ASGCLGTSAGRVGV Trigger: CACCCCGACCCTTCCCGCACTGGTCCCCAGGCACCCGCTGGCCAACCGACGGATTTCGTTGGGCTTTGCGGTGGTGCGCAGCTTTAGGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR-3UTR GCA 90 bp | GGAAGCTTGAACCAGCCCAGAGTTGGCAGGCGAAGAGGCGCTGGCGGTCAGCAAGTGCTCCGGCCTGCGTaGCTGGGAGAAGAGGCTGTG | + |
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Preference number: 2 (lower is better) Translates to: GSLNQPRVGRRRGAGGQQVLRPA*LGEEAV Trigger: CACAGCCTCTTCTCCCAGGCACGCAGGCCGGAGCAC...TTGCTGACCGCCAGCGCCTCTTCGCCTGCCAACTCTGGGCTGGTTCAAGCTTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR-3UTR GCA 90 bp | TACAATGACACAGTCAGTCAGTCCCCAGAGGGAGTCGGGGCCTGGACAATGGGGGTCAGCAAGGCGCTGTaGTCCGGCCTGCGTGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: YNDTVSQSPEGVGAWTMGVSKAL*SGLRAW Trigger: CCAGGCACGCAGGCCGGAGCACAGCGCCTTGCTGAC...CCCCATTGTCCAGGCCCCGACTCCCTCTGGGGACTGACTGACTGTGTCATTGTA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR-3UTR GCA 90 bp | AAGGAGAGAATAGTGGAACCGAGGAAGCTTGAACCAGCCCAGAGTTGGCAGGCGCGCTGTGCTCCGGCCTaGGTGCCTGGGAGAAGAGGC | + |
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Preference number: 2 (lower is better) Translates to: KERIVEPRKLEPAQSWQARCAPA*VPGRRG Trigger: GCCTCTTCTCCCAGGCACGCAGGCCGGAGCACAGCG...CGCCTGCCAACTCTGGGCTGGTTCAAGCTTCCTCGGTTCCACTATTCTCTCCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR-3UTR CCA 90 bp | TACAATGACACAGTCAGTCAGTCCCCAGAGGGAGTCGGGGCCTGGACAATGGGGTCCGGCCTGCGTGCCTaGGAGAAGAGGCTGTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: YNDTVSQSPEGVGAWTMGSGLRA*EKRLCP Trigger: AGGACACAGCCTCTTCTCCCAGGCACGCAGGCCGGA...CCCCATTGTCCAGGCCCCGACTCCCTCTGGGGACTGACTGACTGTGTCATTGTA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR-3UTR TCA 90 bp | GATACAATGACACAGTCAGTCAGTCCCCAGAGGGAGTCGGGGCCTGGACAATGGGGAACCGAGGAAGCTTaGACCAGCCCAGAGTTGGCA | + |
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Preference number: 2 (lower is better) Translates to: DTMTQSVSPQRESGPGQWGTEEA*TSPELA Trigger: TGCCAACTCTGGGCTGGTTCAAGCTTCCTCGGTTCC...CCATTGTCCAGGCCCCGACTCCCTCTGGGGACTGACTGACTGTGTCATTGTATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR-3UTR TCA 90 bp | AATGGGGAGAGGTTGGTTACAGCGGCTTCATTTGAAGGGGGTTTAGAGCGTATTTCGAACAGCAAGACCTaGTCCCTGTTTAAGGGACAA | + |
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Preference number: 2 (lower is better) Translates to: NGERLVTAASFEGGLERISNSKT*SLFKGQ Trigger: TTGTCCCTTAAACAGGGATCAGGTCTTGCTGTTCGA...AATACGCTCTAAACCCCCTTCAAATGAAGCCGCTGTAACCAACCTCTCCCCATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR-3UTR TCA 90 bp | GTATTGGAAACAGAGTCATTTTCCCCAATACAATACCATGTGAGACAGTTCTCTCAGCCACTCGCGGAGTaGAAAGCCCAGATTGACCGA | + |
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Preference number: 2 (lower is better) Translates to: VLETESFSPIQYHVRQFSQPLAE*KAQIDR Trigger: TCGGTCAATCTGGGCTTTTCACTCCGCGAGTGGCTG...AGAGAACTGTCTCACATGGTATTGTATTGGGGAAAATGACTCTGTTTCCAATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR CCA 72 bp | ATAGTGGAACCGAGGAAGCTTGAACCAGCCCAGAGTTaGCAGGCGAAGAGGCGCTGGCGGTCAGCAAGGCGC | + |
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Preference number: 3 (lower is better) Translates to: IVEPRKLEPAQS*QAKRRWRSARR Trigger: GCGCCTTGCTGACCGCCAGCGCCTCTTCGCCTGCCAACTCTGGGCTGGTTCAAGCTTCCTCGGTTCCACTAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR TCA 72 bp | CTCTCTGCTAGGGGGACTTCTTCGAACAGCAAGACCTaGTCCCTGTTTAAGGGACAAACGGACAGAAGGGAG | + |
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Preference number: 3 (lower is better) Translates to: LSARGTSSNSKT*SLFKGQTDRRE Trigger: CTCCCTTCTGTCCGTTTGTCCCTTAAACAGGGATCAGGTCTTGCTGTTCGAAGAAGTCCCCCTAGCAGAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR-3UTR CAA 90 bp | TTCTGGCATTACAGAGACGATACAATGACACAGTCAGTCAGTCCCCAGAGGGAGAAGTCCATAGACGTGTaGCATAAAGGACCACAGTGG | + |
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Preference number: 3 (lower is better) Translates to: FWHYRDDTMTQSVSPQREKSIDV*HKGPQW Trigger: CCACTGTGGTCCTTTATGCAACACGTCTATGGACTT...CTCCCTCTGGGGACTGACTGACTGTGTCATTGTATCGTCTCTGTAATGCCAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR TCA 72 bp | GGACAATGGGGAGAGGTTGGTTACAGCGGCTTCATTTaGAGGGGGTTTAGAGCGTATTGGAAACAGAGTCAT | + |
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Preference number: 3 (lower is better) Translates to: GQWGEVGYSGFI*RGFRAYWKQSH Trigger: ATGACTCTGTTTCCAATACGCTCTAAACCCCCTTCAAATGAAGCCGCTGTAACCAACCTCTCCCCATTGTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR CCA 72 bp | GTTAAGTCCATAGACGTGTTGCATAAAGGACCACAGTaGGGGGAGACGAGTTGGGGGCAAGAAAGAAATGTT | + |
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Preference number: 3 (lower is better) Translates to: VKSIDVLHKGPQ*GETSWGQERNV Trigger: AACATTTCTTTCTTGCCCCCAACTCGTCTCCCCCCACTGTGGTCCTTTATGCAACACGTCTATGGACTTAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CCA 90 bp | GGAAGCTTGAACCAGCCCAGAGTTGGCAGGCGAAGAGGCGCTGGCGGTCAGCAAGGGGACACGGAGTGCTaGCGGCCCAGGGGTGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: GSLNQPRVGRRRGAGGQQGDTEC*RPRGAW Trigger: CCACGCACCCCTGGGCCGCCAGCACTCCGTGTCCCC...TTGCTGACCGCCAGCGCCTCTTCGCCTGCCAACTCTGGGCTGGTTCAAGCTTCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR TCA 90 bp | TACAATGACACAGTCAGTCAGTCCCCAGAGGGAGTCGGGGCCTGGACAATGGGGGCAGCTGCGAAGCGGTaGCACAGAGGGGACACACGC | + |
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Preference number: 4 (lower is better) Translates to: YNDTVSQSPEGVGAWTMGAAAKR*HRGDTR Trigger: GCGTGTGTCCCCTCTGTGTCACCGCTTCGCAGCTGC...CCCCATTGTCCAGGCCCCGACTCCCTCTGGGGACTGACTGACTGTGTCATTGTA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR GCA 90 bp | GGAAGCTTGAACCAGCCCAGAGTTGGCAGGCGAAGAGGCGCTGGCGGTCAGCAATCCGCATCCTCTTGCTaGTGGGCAGCTGGTTCGAGC | + |
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Preference number: 4 (lower is better) Translates to: GSLNQPRVGRRRGAGGQQSASSC*WAAGSS Trigger: GCTCGAACCAGCTGCCCAGCAGCAAGAGGATGCGGA...TTGCTGACCGCCAGCGCCTCTTCGCCTGCCAACTCTGGGCTGGTTCAAGCTTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CCA 90 bp | TTAGCTCTGCCTAAAGCTGCGCACCACCGCAAAGCCCAACGAAATCCGTCGGTTGTAGGGGAAGAGCGGTaGCGGGCTGCCCTCCGGAGC | + |
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Preference number: 4 (lower is better) Translates to: LALPKAAHHRKAQRNPSVVGEER*RAALRS Trigger: GCTCCGGAGGGCAGCCCGCCACCGCTCTTCCCCTAC...AACCGACGGATTTCGTTGGGCTTTGCGGTGGTGCGCAGCTTTAGGCAGAGCTAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR GCA 90 bp | AGACCTGATCCCTGTTTAAGGGACAAACGGACAGAAGGGAGAGACTTCCTGAGGACAGCAAGCCGGCCTTaGGCGCGTGGCAGGCGCCCG | + |
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Preference number: 4 (lower is better) Translates to: RPDPCLRDKRTEGRDFLRTASRP*ARGRRP Trigger: CGGGCGCCTGCCACGCGCGCAAGGCCGGCTTGCTGT...CCTCAGGAAGTCTCTCCCTTCTGTCCGTTTGTCCCTTAAACAGGGATCAGGTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR GCA 90 bp | TACAATGACACAGTCAGTCAGTCCCCAGAGGGAGTCGGGGCCTGGACAATGGGGCCGTCCGCATCCTCTTaGTGCTGGGCAGCTGGTTCG | + |
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Preference number: 4 (lower is better) Translates to: YNDTVSQSPEGVGAWTMGPSASS*CWAAGS Trigger: CGAACCAGCTGCCCAGCAGCAAGAGGATGCGGACGG...CCCCATTGTCCAGGCCCCGACTCCCTCTGGGGACTGACTGACTGTGTCATTGTA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR GCA 90 bp | CAGCCTTCATCGCTTGGAGTCCTCCTAAACACCCTGAAGCCCAAGGGACAGGGGAGAGCGAAGAGCACTTaGAGCCTTGCGGTGCGCCCC | + |
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Preference number: 4 (lower is better) Translates to: QPSSLGVLLNTLKPKGQGRAKST*SLAVRP Trigger: GGGGCGCACCGCAAGGCTGCAAGTGCTCTTCGCTCT...CCCCTGTCCCTTGGGCTTCAGGGTGTTTAGGAGGACTCCAAGCGATGAAGGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CCA 90 bp | CGAGGAAGCTTGAACCAGCCCAGAGTTGGCAGGCGAAGAGGCGCTGGCGGTCAGCGTCCTCTGAGCATTTaGCTGAGGAGAGCGAAGAGC | + |
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Preference number: 4 (lower is better) Translates to: RGSLNQPRVGRRRGAGGQRPLSI*LRRAKS Trigger: GCTCTTCGCTCTCCTCAGCCAAATGCTCAGAGGACG...CTGACCGCCAGCGCCTCTTCGCCTGCCAACTCTGGGCTGGTTCAAGCTTCCTCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR GCA 90 bp | AGCTTGAACCAGCCCAGAGTTGGCAGGCGAAGAGGCGCTGGCGGTCAGCAAGGCTGCTGTCCACAGAGATaGAGTGAAACTGTCTGGGAT | + |
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Preference number: 4 (lower is better) Translates to: SLNQPRVGRRRGAGGQQGCCPQR*SETVWD Trigger: ATCCCAGACAGTTTCACTGCATCTCTGTGGACAGCA...GCCTTGCTGACCGCCAGCGCCTCTTCGCCTGCCAACTCTGGGCTGGTTCAAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CCA 90 bp | AGACCTGATCCCTGTTTAAGGGACAAACGGACAGAAGGGAGAGACTTCCTGAGGCGGCCCAGGGGTGCGTaGCAGTACTGCGATCCGAAG | + |
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Preference number: 4 (lower is better) Translates to: RPDPCLRDKRTEGRDFLRRPRGA*QYCDPK Trigger: CTTCGGATCGCAGTACTGCCACGCACCCCTGGGCCG...CCTCAGGAAGTCTCTCCCTTCTGTCCGTTTGTCCCTTAAACAGGGATCAGGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CCA 90 bp | TTAGCTCTGCCTAAAGCTGCGCACCACCGCAAAGCCCAACGAAATCCGTCGGTTGCATCCTCTTGCTGCTaGGCAGCTGGTTCGAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LALPKAAHHRKAQRNPSVASSCC*AAGSSC Trigger: GCAGCTCGAACCAGCTGCCCAGCAGCAAGAGGATGC...AACCGACGGATTTCGTTGGGCTTTGCGGTGGTGCGCAGCTTTAGGCAGAGCTAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CCA 90 bp | AAGGAGAGAATAGTGGAACCGAGGAAGCTTGAACCAGCCCAGAGTTGGCAGGCGTGCAGTGAAACTGTCTaGGATCCGGCAGCGGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: KERIVEPRKLEPAQSWQACSETV*DPAAGR Trigger: CCTACCCGCTGCCGGATCCCAGACAGTTTCACTGCA...CGCCTGCCAACTCTGGGCTGGTTCAAGCTTCCTCGGTTCCACTATTCTCTCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR GCA 90 bp | AGACCTGATCCCTGTTTAAGGGACAAACGGACAGAAGGGAGAGACTTCCTGAGGGGTGCGTGGCAGTACTaGGATCCGAAGGGAGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: RPDPCLRDKRTEGRDFLRGAWQY*DPKGGK Trigger: CTTCCCTCCCTTCGGATCGCAGTACTGCCACGCACC...CCTCAGGAAGTCTCTCCCTTCTGTCCGTTTGTCCCTTAAACAGGGATCAGGTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR GCA 90 bp | AATGGGGAGAGGTTGGTTACAGCGGCTTCATTTGAAGGGGGTTTAGAGCGTATTAGGTCGCGATCTCGATaGGCCGCAGGCGGGAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: NGERLVTAASFEGGLERIRSRSR*AAGGRG Trigger: ACCTCTCCCGCCTGCGGCGCATCGAGATCGCGACCT...AATACGCTCTAAACCCCCTTCAAATGAAGCCGCTGTAACCAACCTCTCCCCATT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CCA 90 bp | CAGCCTTCATCGCTTGGAGTCCTCCTAAACACCCTGAAGCCCAAGGGACAGGGGAGGAAGATGGAGACATaGGCAATTCGTCGTCGTCCT | + |
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Preference number: 4 (lower is better) Translates to: QPSSLGVLLNTLKPKGQGRKMET*AIRRRP Trigger: AGGACGACGACGAATTGCCCATGTCTCCATCTTCCT...CCCCTGTCCCTTGGGCTTCAGGGTGTTTAGGAGGACTCCAAGCGATGAAGGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CCA 90 bp | AATGGGGAGAGGTTGGTTACAGCGGCTTCATTTGAAGGGGGTTTAGAGCGTATTGGGAGAGGTACATGTTaGAGGCGAACTCTCGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: NGERLVTAASFEGGLERIGRGTC*RRTLAP Trigger: TGGAGCGAGAGTTCGCCTCCAACATGTACCTCTCCC...AATACGCTCTAAACCCCCTTCAAATGAAGCCGCTGTAACCAACCTCTCCCCATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CCA 90 bp | TTCTGGCATTACAGAGACGATACAATGACACAGTCAGTCAGTCCCCAGAGGGAGCTTCCCGGAGGAAGATaGAGACATGGGCAATTCGTC | + |
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Preference number: 4 (lower is better) Translates to: FWHYRDDTMTQSVSPQRELPGGR*RHGQFV Trigger: GACGAATTGCCCATGTCTCCATCTTCCTCCGGGAAG...CTCCCTCTGGGGACTGACTGACTGTGTCATTGTATCGTCTCTGTAATGCCAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| 3UTR CAA 72 bp | AAAGCAAACAGCCACTCGCGGAGTGAAAAGCCCAGATaGACCGAGAAGGAGAGAATAGTGGAACCGAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: KANSHSRSEKPR*TEKERIVEPRK Trigger: CTTCCTCGGTTCCACTATTCTCTCCTTCTCGGTCAATCTGGGCTTTTCACTCCGCGAGTGGCTGTTTGCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR TCA 90 bp | GTATTGGAAACAGAGTCATTTTCCCCAATACAATACCATGTGAGACAGTTCTCTTCCACAGAGATGCAGTaGAACTGTCTGGGATCCGGC | + |
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Preference number: 4 (lower is better) Translates to: VLETESFSPIQYHVRQFSSTEMQ*NCLGSG Trigger: GCCGGATCCCAGACAGTTTCACTGCATCTCTGTGGA...AGAGAACTGTCTCACATGGTATTGTATTGGGGAAAATGACTCTGTTTCCAATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CCA 90 bp | GCCGTGGAGCGCGTGCGGCGGCGGGACCGCGTAGGGGAAGAGCGGTaGCGGGCTGCCCTCCGGAGCCTTCTTGTCGCTGGCTTCCCGCAG | + |
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Preference number: 5 (lower is better) Translates to: AVERVRRRDRVGEER*RAALRSLLVAGFPQ Trigger: CTGCGGGAAGCCAGCGACAAGAAGGCTCCGGAGGGCAGCCCGCCACCGCTCTTCCCCTACGCGGTCCCGCCGCCGCACGCGCTCCACGGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CCA 90 bp | GCGGCCGCAGCCGGGCCGTGGGCGACTCCAGGGGACACGGAGTGCTaGCGGCCCAGGGGTGCGTGGCAGTACTGCGATCCGAAGGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: AAAAGPWATPGDTEC*RPRGAWQYCDPKGG Trigger: CCCTCCCTTCGGATCGCAGTACTGCCACGCACCCCTGGGCCGCCAGCACTCCGTGTCCCCTGGAGTCGCCCACGGCCCGGCTGCGGCCGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS GCA 90 bp | GCGCGTGCGGCGGCGGGACCGCGTAGGGGAAGAGCGGTGGCGGGCTaGCCTCCGGAGCCTTCTTGTCGCTGGCTTCCCGCAGCACAAGGG | + |
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Preference number: 5 (lower is better) Translates to: ARAAAGPRRGRAVAG*PPEPSCRWLPAAQG Trigger: CCCTTGTGCTGCGGGAAGCCAGCGACAAGAAGGCTCCGGAGGGCAGCCCGCCACCGCTCTTCCCCTACGCGGTCCCGCCGCCGCACGCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS GCA 90 bp | GCTGCGGCCGCAGCCGGGCCGTGGGCGACTCCAGGGGACACGGAGTaGTGGCGGCCCAGGGGTGCGTGGCAGTACTGCGATCCGAAGGGA | + |
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Preference number: 5 (lower is better) Translates to: AAAAAGPWATPGDTE*WRPRGAWQYCDPKG Trigger: TCCCTTCGGATCGCAGTACTGCCACGCACCCCTGGGCCGCCAGCACTCCGTGTCCCCTGGAGTCGCCCACGGCCCGGCTGCGGCCGCAGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS GCA 90 bp | TCTGGGATCCGGCAGCGGGTAGGAGGTCTGGTAGAGTGCAGCAGCTaGTGCGGCCGCAGCCGGGCCGTGGGCGACTCCAGGGGACACGGA | + |
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Preference number: 5 (lower is better) Translates to: SGIRQRVGGLVECSS*CGRSRAVGDSRGHG Trigger: TCCGTGTCCCCTGGAGTCGCCCACGGCCCGGCTGCGGCCGCAGCAGCTGCTGCACTCTACCAGACCTCCTACCCGCTGCCGGATCCCAGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS GCA 90 bp | CCAGGGGACACGGAGTGCTGGCGGCCCAGGGGTGCGTGGCAGTACTaGGATCCGAAGGGAGGGAAGGACGCCTTGAGTAGCGGCAGTGCC | + |
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Preference number: 5 (lower is better) Translates to: PGDTECWRPRGAWQY*DPKGGKDALSSGSA Trigger: GGCACTGCCGCTACTCAAGGCGTCCTTCCCTCCCTTCGGATCGCAGTACTGCCACGCACCCCTGGGCCGCCAGCACTCCGTGTCCCCTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS GCA 90 bp | GTGAAACTGTCTGGGATCCGGCAGCGGGTAGGAGGTCTGGTAGAGTaGAGCAGCTGCTGCGGCCGCAGCCGGGCCGTGGGCGACTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: VKLSGIRQRVGGLVE*SSCCGRSRAVGDSR Trigger: CCTGGAGTCGCCCACGGCCCGGCTGCGGCCGCAGCAGCTGCTGCACTCTACCAGACCTCCTACCCGCTGCCGGATCCCAGACAGTTTCAC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CCA 90 bp | AGGGGAAGAGCGGTGGCGGGCTGCCCTCCGGAGCCTTCTTGTCGCTaGCTTCCCGCAGCACAAGGGAATCCACCAGGAAGGAGCGCGGCA | + |
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Preference number: 5 (lower is better) Translates to: RGRAVAGCPPEPSCR*LPAAQGNPPGRSAA Trigger: TGCCGCGCTCCTTCCTGGTGGATTCCCTTGTGCTGCGGGAAGCCAGCGACAAGAAGGCTCCGGAGGGCAGCCCGCCACCGCTCTTCCCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CAA 90 bp | GATACAATGACACAGTCAGTCAGTCCCCAGAGGGAGTCGGGGCCTGGACAATGGCACAGCAAGCCGGCCTaGCGCGCGTGGCAGGCGCCC | + |
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Preference number: 5 (lower is better) Translates to: DTMTQSVSPQRESGPGQWHSKPA*RAWQAP Trigger: GGGCGCCTGCCACGCGCGCAAGGCCGGCTTGCTGTG...CCATTGTCCAGGCCCCGACTCCCTCTGGGGACTGACTGACTGTGTCATTGTATC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CAA 90 bp | AGCTTGAACCAGCCCAGAGTTGGCAGGCGAAGAGGCGCTGGCGGTCAGCAAGGCGAGAGCGAAGAGCACTaGCAGCCTTGCGGTGCGCCC | + |
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Preference number: 5 (lower is better) Translates to: SLNQPRVGRRRGAGGQQGESEEH*QPCGAP Trigger: GGGCGCACCGCAAGGCTGCAAGTGCTCTTCGCTCTC...GCCTTGCTGACCGCCAGCGCCTCTTCGCCTGCCAACTCTGGGCTGGTTCAAGCT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CAA 90 bp | GGAAGCTTGAACCAGCCCAGAGTTGGCAGGCGAAGAGGCGCTGGCGGTCAGCAAGCCGTCCGCATCCTCTaGCTGCTGGGCAGCTGGTTC | + |
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Preference number: 5 (lower is better) Translates to: GSLNQPRVGRRRGAGGQQAVRIL*LLGSWF Trigger: GAACCAGCTGCCCAGCAGCAAGAGGATGCGGACGGC...TTGCTGACCGCCAGCGCCTCTTCGCCTGCCAACTCTGGGCTGGTTCAAGCTTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CAA 90 bp | GATACAATGACACAGTCAGTCAGTCCCCAGAGGGAGTCGGGGCCTGGACAATGGAGAGCACTTGCAGCCTaGCGGTGCGCCCCCGCCGGC | + |
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Preference number: 5 (lower is better) Translates to: DTMTQSVSPQRESGPGQWRALAA*RCAPAG Trigger: GCCGGCGGGGGCGCACCGCAAGGCTGCAAGTGCTCT...CCATTGTCCAGGCCCCGACTCCCTCTGGGGACTGACTGACTGTGTCATTGTATC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CCA 90 bp | GCAGCTGGTTCGAGCTGCTGTCCACAGAGATGCAGTGAAACTGTCTaGGATCCGGCAGCGGGTAGGAGGTCTGGTAGAGTGCAGCAGCTG | + |
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Preference number: 5 (lower is better) Translates to: AAGSSCCPQRCSETV*DPAAGRRSGRVQQL Trigger: CAGCTGCTGCACTCTACCAGACCTCCTACCCGCTGCCGGATCCCAGACAGTTTCACTGCATCTCTGTGGACAGCAGCTCGAACCAGCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CCA 90 bp | AGGAAGATGGAGACATGGGCAATTCGTCGTCGTCCTCTGAGCATTTaGCTGAGGAGAGCGAAGAGCACTTGCAGCCTTGCGGTGCGCCCC | + |
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Preference number: 5 (lower is better) Translates to: RKMETWAIRRRPLSI*LRRAKSTCSLAVRP Trigger: GGGGCGCACCGCAAGGCTGCAAGTGCTCTTCGCTCTCCTCAGCCAAATGCTCAGAGGACGACGACGAATTGCCCATGTCTCCATCTTCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CAA 90 bp | AGCTTGAACCAGCCCAGAGTTGGCAGGCGAAGAGGCGCTGGCGGTCAGCAAGGCCGGTGGTTACTGCCTTaGCCTTCTTTCTTGTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: SLNQPRVGRRRGAGGQQGRWLLP*PSFLCF Trigger: GAAGCACAAGAAAGAAGGCAAAGGCAGTAACCACCG...GCCTTGCTGACCGCCAGCGCCTCTTCGCCTGCCAACTCTGGGCTGGTTCAAGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS-3UTR CAA 90 bp | TACAATGACACAGTCAGTCAGTCCCCAGAGGGAGTCGGGGCCTGGACAATGGGGTCGTCCTCTGAGCATTaGGCTGAGGAGAGCGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: YNDTVSQSPEGVGAWTMGSSSEH*AEESEE Trigger: CTCTTCGCTCTCCTCAGCCAAATGCTCAGAGGACGA...CCCCATTGTCCAGGCCCCGACTCCCTCTGGGGACTGACTGACTGTGTCATTGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CCA 72 bp | CGCGTGCGGCGGCGGGACCGCGTAGGGGAAGAGCGGTaGCGGGCTGCCCTCCGGAGCCTTCTTGTCGCTGGC | + |
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Preference number: 6 (lower is better) Translates to: RVRRRDRVGEER*RAALRSLLVAG Trigger: GCCAGCGACAAGAAGGCTCCGGAGGGCAGCCCGCCACCGCTCTTCCCCTACGCGGTCCCGCCGCCGCACGCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CCA 72 bp | GCCGGGCCGTGGGCGACTCCAGGGGACACGGAGTGCTaGCGGCCCAGGGGTGCGTGGCAGTACTGCGATCCG | + |
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Preference number: 6 (lower is better) Translates to: AGPWATPGDTEC*RPRGAWQYCDP Trigger: CGGATCGCAGTACTGCCACGCACCCCTGGGCCGCCAGCACTCCGTGTCCCCTGGAGTCGCCCACGGCCCGGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS GCA 72 bp | GCGGCGGGACCGCGTAGGGGAAGAGCGGTGGCGGGCTaGCCTCCGGAGCCTTCTTGTCGCTGGCTTCCCGCA | + |
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Preference number: 6 (lower is better) Translates to: AAGPRRGRAVAG*PPEPSCRWLPA Trigger: TGCGGGAAGCCAGCGACAAGAAGGCTCCGGAGGGCAGCCCGCCACCGCTCTTCCCCTACGCGGTCCCGCCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS GCA 72 bp | GCAGCCGGGCCGTGGGCGACTCCAGGGGACACGGAGTaGTGGCGGCCCAGGGGTGCGTGGCAGTACTGCGAT | + |
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Preference number: 6 (lower is better) Translates to: AAGPWATPGDTE*WRPRGAWQYCD Trigger: ATCGCAGTACTGCCACGCACCCCTGGGCCGCCAGCACTCCGTGTCCCCTGGAGTCGCCCACGGCCCGGCTGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS GCA 72 bp | CGGCAGCGGGTAGGAGGTCTGGTAGAGTGCAGCAGCTaGTGCGGCCGCAGCCGGGCCGTGGGCGACTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: RQRVGGLVECSS*CGRSRAVGDSR Trigger: CCTGGAGTCGCCCACGGCCCGGCTGCGGCCGCAGCAGCTGCTGCACTCTACCAGACCTCCTACCCGCTGCCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS GCA 72 bp | CCTCTGAGCATTTGGCTGAGGAGAGCGAAGAGCACTTaGAGCCTTGCGGTGCGCCCCCGCCGGCCCCCGCCC | + |
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Preference number: 6 (lower is better) Translates to: PLSIWLRRAKST*SLAVRPRRPPP Trigger: GGGCGGGGGCCGGCGGGGGCGCACCGCAAGGCTGCAAGTGCTCTTCGCTCTCCTCAGCCAAATGCTCAGAGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CCA 72 bp | CCAGGGGACACGGAGTGCTGGCGGCCCAGGGGTGCGTaGCAGTACTGCGATCCGAAGGGAGGGAAGGACGCC | + |
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Preference number: 6 (lower is better) Translates to: PGDTECWRPRGA*QYCDPKGGKDA Trigger: GGCGTCCTTCCCTCCCTTCGGATCGCAGTACTGCCACGCACCCCTGGGCCGCCAGCACTCCGTGTCCCCTGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CAA 72 bp | TCCTCTGAGCATTTGGCTGAGGAGAGCGAAGAGCACTaGCAGCCTTGCGGTGCGCCCCCGCCGGCCCCCGCC | + |
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Preference number: 6 (lower is better) Translates to: SSEHLAEESEEH*QPCGAPPPAPA Trigger: GGCGGGGGCCGGCGGGGGCGCACCGCAAGGCTGCAAGTGCTCTTCGCTCTCCTCAGCCAAATGCTCAGAGGA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CCA 72 bp | GCGGTGGCGGGCTGCCCTCCGGAGCCTTCTTGTCGCTaGCTTCCCGCAGCACAAGGGAATCCACCAGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: AVAGCPPEPSCR*LPAAQGNPPGR Trigger: CCTTCCTGGTGGATTCCCTTGTGCTGCGGGAAGCCAGCGACAAGAAGGCTCCGGAGGGCAGCCCGCCACCGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CAA 72 bp | GGGAAGAGCGGTGGCGGGCTGCCCTCCGGAGCCTTCTaGTCGCTGGCTTCCCGCAGCACAAGGGAATCCACC | + |
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Preference number: 6 (lower is better) Translates to: GKSGGGLPSGAF*SLASRSTREST Trigger: GGTGGATTCCCTTGTGCTGCGGGAAGCCAGCGACAAGAAGGCTCCGGAGGGCAGCCCGCCACCGCTCTTCCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS GCA 72 bp | ACGGAGTGCTGGCGGCCCAGGGGTGCGTGGCAGTACTaGGATCCGAAGGGAGGGAAGGACGCCTTGAGTAGC | + |
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Preference number: 6 (lower is better) Translates to: TECWRPRGAWQY*DPKGGKDALSS Trigger: GCTACTCAAGGCGTCCTTCCCTCCCTTCGGATCGCAGTACTGCCACGCACCCCTGGGCCGCCAGCACTCCGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CAA 90 bp | GAGGAAGATGGAGACATGGGCAATTCGTCGTCGTCCTCTGAGCATTaGGCTGAGGAGAGCGAAGAGCACTTGCAGCCTTGCGGTGCGCCC | + |
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Preference number: 6 (lower is better) Translates to: EEDGDMGNSSSSSEH*AEESEEHLQPCGAP Trigger: GGGCGCACCGCAAGGCTGCAAGTGCTCTTCGCTCTCCTCAGCCAAATGCTCAGAGGACGACGACGAATTGCCCATGTCTCCATCTTCCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CCA 72 bp | GAGACATGGGCAATTCGTCGTCGTCCTCTGAGCATTTaGCTGAGGAGAGCGAAGAGCACTTGCAGCCTTGCG | + |
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Preference number: 6 (lower is better) Translates to: ETWAIRRRPLSI*LRRAKSTCSLA Trigger: CGCAAGGCTGCAAGTGCTCTTCGCTCTCCTCAGCCAAATGCTCAGAGGACGACGACGAATTGCCCATGTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CAA 72 bp | GGAGACATGGGCAATTCGTCGTCGTCCTCTGAGCATTaGGCTGAGGAGAGCGAAGAGCACTTGCAGCCTTGC | + |
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Preference number: 6 (lower is better) Translates to: GDMGNSSSSSEH*AEESEEHLQPC Trigger: GCAAGGCTGCAAGTGCTCTTCGCTCTCCTCAGCCAAATGCTCAGAGGACGACGACGAATTGCCCATGTCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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| CDS CCA 72 bp | GATCTCTGTCATCCTTCCCGGAGGAAGATGGAGACATaGGCAATTCGTCGTCGTCCTCTGAGCATTTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: DLCHPSRRKMET*AIRRRPLSIWL Trigger: CAGCCAAATGCTCAGAGGACGACGACGAATTGCCCATGTCTCCATCTTCCTCCGGGAAGGATGACAGAGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065382.6 |
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