Pregenerated sensors for GP9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030054Ensembl transcript IDs: ENSMUST00000032133.5
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ATGAGGCGGCCTCAGCCTGCCCCCTGTGGGCTTTTGATGGCATGGGCTGACTGGATGCTTCTGGGGACCTaGGCTCTCCCTGGTTTTATG | + |
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Preference number: 2 (lower is better) Translates to: MRRPQPAPCGLLMAWADWMLLGT*ALPGFM Trigger: CATAAAACCAGGGAGAGCCCAGGTCCCCAGAAGCAT...CCAGTCAGCCCATGCCATCAAAAGCCCACAGGGGGCAGGCTGAGGCCGCCTCAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| 3UTR-3UTR CCA 90 bp | TCTCCTGGGGATAAAACCCAGGTCTTTAGACTGGACAGCAAGTGTCTTTGCCCATCAGCCTGCCCCCTGTaGGCTTTTGATGGCATGGGC | + |
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Preference number: 2 (lower is better) Translates to: SPGDKTQVFRLDSKCLCPSACPL*AFDGMG Trigger: GCCCATGCCATCAAAAGCCCACAGGGGGCAGGCTGA...TGGGCAAAGACACTTGCTGTCCAGTCTAAAGACCTGGGTTTTATCCCCAGGAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| 3UTR CCA 72 bp | AGGTCTCTCCTGGGGATAAAACCCAGGTCTTTAGACTaGACAGCAAGTGTCTTTGCCCATGAGGCGGCCTCA | + |
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Preference number: 3 (lower is better) Translates to: RSLLGIKPRSLD*TASVFAHEAAS Trigger: TGAGGCCGCCTCATGGGCAAAGACACTTGCTGTCCAGTCTAAAGACCTGGGTTTTATCCCCAGGAGAGACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS-3UTR CCA 90 bp | TCTTTGCCCATGAGGCGGCCTCAGCCTGCCCCCTGTGGGCTTTTGATGGCATGGCCAGCGGGCGCCTGGTaGCCAAGTCAGGGCTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: SLPMRRPQPAPCGLLMAWPAGAW*PSQGWH Trigger: GTGCCAGCCCTGACTTGGCCACCAGGCGCCCGCTGG...CCATGCCATCAAAAGCCCACAGGGGGCAGGCTGAGGCCGCCTCATGGGCAAAGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS-3UTR CCA 90 bp | ATGAGGCGGCCTCAGCCTGCCCCCTGTGGGCTTTTGATGGCATGGGCTGACTGGGGCAGGTACAGGGCCTaGGGCAAGCCTGAGTATCTG | + |
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Preference number: 4 (lower is better) Translates to: MRRPQPAPCGLLMAWADWGRYRA*GKPEYL Trigger: CAGATACTCAGGCTTGCCCCAGGCCCTGTACCTGCC...CCAGTCAGCCCATGCCATCAAAAGCCCACAGGGGGCAGGCTGAGGCCGCCTCAT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS-3UTR GCA 90 bp | TCTTTGCCCATGAGGCGGCCTCAGCCTGCCCCCTGTGGGCTTTTGATGGCATGGAGGGCTGTGAGGCCTTaGCCCTCACAGTTCACCTTT | + |
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Preference number: 4 (lower is better) Translates to: SLPMRRPQPAPCGLLMAWRAVRP*PSQFTF Trigger: AAAGGTGAACTGTGAGGGGCAAGGCCTCACAGCCCT...CCATGCCATCAAAAGCCCACAGGGGGCAGGCTGAGGCCGCCTCATGGGCAAAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS-3UTR CCA 90 bp | TCTCCTGGGGATAAAACCCAGGTCTTTAGACTGGACAGCAAGTGTCTTTGCCCAAGGGCCTCGGGCATGTaGTCCTCCAGCCAGAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: SPGDKTQVFRLDSKCLCPRASGM*SSSQRR Trigger: GCGCCTCTGGCTGGAGGACCACATGCCCGAGGCCCT...TGGGCAAAGACACTTGCTGTCCAGTCTAAAGACCTGGGTTTTATCCCCAGGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS-3UTR CCA 90 bp | GTCTTTGCCCATGAGGCGGCCTCAGCCTGCCCCCTGTGGGCTTTTGATGGCATGTGGCCAAGTCAGGGCTaGCACAGTACACATGCATTA | + |
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Preference number: 4 (lower is better) Translates to: VFAHEAASACPLWAFDGMWPSQG*HSTHAL Trigger: TAATGCATGTGTACTGTGCCAGCCCTGACTTGGCCA...CATGCCATCAAAAGCCCACAGGGGGCAGGCTGAGGCCGCCTCATGGGCAAAGAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS-3UTR TCA 90 bp | TCTCCTGGGGATAAAACCCAGGTCTTTAGACTGGACAGCAAGTGTCTTTGCCCAAGAGGCGCAGGTAGGTaGGGCTGCAGTCACAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: SPGDKTQVFRLDSKCLCPRGAGR*GCSHSA Trigger: GGCACTGTGACTGCAGCCTCACCTACCTGCGCCTCT...TGGGCAAAGACACTTGCTGTCCAGTCTAAAGACCTGGGTTTTATCCCCAGGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS-3UTR TCA 90 bp | TCTCCTGGGGATAAAACCCAGGTCTTTAGACTGGACAGCAAGTGTCTTTGCCCATCCAGGTCCCACAGCTaGGGCAAGTGGTCGAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: SPGDKTQVFRLDSKCLCPSRSHS*GKWSKA Trigger: TGCCTTCGACCACTTGCCTCAGCTGTGGGACCTGGA...TGGGCAAAGACACTTGCTGTCCAGTCTAAAGACCTGGGTTTTATCCCCAGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS-3UTR CCA 90 bp | GTCTCTCCTGGGGATAAAACCCAGGTCTTTAGACTGGACAGCAAGTGTCTTTGCATGGTTTCCAAGGACTaGCAGGTACAGGGCCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: VSPGDKTQVFRLDSKCLCMVSKD*QVQGLG Trigger: CCCCAGGCCCTGTACCTGCCAGTCCTTGGAAACCAT...GCAAAGACACTTGCTGTCCAGTCTAAAGACCTGGGTTTTATCCCCAGGAGAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS-3UTR CCA 90 bp | TCTCCTGGGGATAAAACCCAGGTCTTTAGACTGGACAGCAAGTGTCTTTGCCCAATAGGCCCAGGATGGTaGCAGCTTCCAGCCACAGCT | + |
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Preference number: 4 (lower is better) Translates to: SPGDKTQVFRLDSKCLCPIGPGW*QLPATA Trigger: AGCTGTGGCTGGAAGCTGCCACCATCCTGGGCCTAT...TGGGCAAAGACACTTGCTGTCCAGTCTAAAGACCTGGGTTTTATCCCCAGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS-3UTR GCA 90 bp | GTCTCTCCTGGGGATAAAACCCAGGTCTTTAGACTGGACAGCAAGTGTCTTTGCAGGCTGCAGTCACAGTaGCAGGGGTTGTGTGTCACA | + |
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Preference number: 4 (lower is better) Translates to: VSPGDKTQVFRLDSKCLCRLQSQ*QGLCVT Trigger: TGTGACACACAACCCCTGGCACTGTGACTGCAGCCT...GCAAAGACACTTGCTGTCCAGTCTAAAGACCTGGGTTTTATCCCCAGGAGAGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS-3UTR GCA 90 bp | TCTCCTGGGGATAAAACCCAGGTCTTTAGACTGGACAGCAAGTGTCTTTGCCCAGCTTCCAGCCACAGCTaGCCAGCTCATAACCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: SPGDKTQVFRLDSKCLCPASSHS*PAHNLS Trigger: TGACAGGTTATGAGCTGGGCAGCTGTGGCTGGAAGC...TGGGCAAAGACACTTGCTGTCCAGTCTAAAGACCTGGGTTTTATCCCCAGGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS GCA 90 bp | CCCAGCGGGCGCCTGGTGGCCAAGTCAGGGCTGGCACAGTACACATaGATTAGGGCCTCGGGCATGTGGTCCTCCAGCCAGAGGCGCAGG | + |
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Preference number: 5 (lower is better) Translates to: PSGRLVAKSGLAQYT*IRASGMWSSSQRRR Trigger: CCTGCGCCTCTGGCTGGAGGACCACATGCCCGAGGCCCTAATGCATGTGTACTGTGCCAGCCCTGACTTGGCCACCAGGCGCCCGCTGGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS GCA 90 bp | ACACCCCTGGATAGGCCCAGGATGGTGGCAGCTTCCAGCCACAGCTaGCCAGCTCATAACCTGTCAGCTGGCCCAGCGGGCGCCTGGTGG | + |
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Preference number: 5 (lower is better) Translates to: TPLDRPRMVAASSHS*PAHNLSAGPAGAWW Trigger: CCACCAGGCGCCCGCTGGGCCAGCTGACAGGTTATGAGCTGGGCAGCTGTGGCTGGAAGCTGCCACCATCCTGGGCCTATCCAGGGGTGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS CCA 90 bp | GCACCTGGTGGCACTGAACGCAGGCTATTGTTGGCCAGCAGGAGCTaGCGAGTGTGCGCTGGTATCACGGGCAGGGCTGTGAGGCCTTGC | + |
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Preference number: 5 (lower is better) Translates to: APGGTERRLLLASRS*RVCAGITGRAVRPC Trigger: GCAAGGCCTCACAGCCCTGCCCGTGATACCAGCGCACACTCGCCAGCTCCTGCTGGCCAACAATAGCCTGCGTTCAGTGCCACCAGGTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS TCA 90 bp | TTAGGGCCTCGGGCATGTGGTCCTCCAGCCAGAGGCGCAGGTAGGTaGGGCTGCAGTCACAGTGCCAGGGGTTGTGTGTCACATCCAGGT | + |
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Preference number: 5 (lower is better) Translates to: LGPRACGPPARGAGR*GCSHSARGCVSHPG Trigger: ACCTGGATGTGACACACAACCCCTGGCACTGTGACTGCAGCCTCACCTACCTGCGCCTCTGGCTGGAGGACCACATGCCCGAGGCCCTAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS TCA 90 bp | CCAGCAGGAGCTGGCGAGTGTGCGCTGGTATCACGGGCAGGGCTGTaGGGCCTTGCCCCTCACAGTTCACCTTTAACCCCATGGTTTCCA | + |
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Preference number: 5 (lower is better) Translates to: PAGAGECALVSRAGL*GLAPHSSPLTPWFP Trigger: TGGAAACCATGGGGTTAAAGGTGAACTGTGAGGGGCAAGGCCTCACAGCCCTGCCCGTGATACCAGCGCACACTCGCCAGCTCCTGCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS-3UTR CAA 90 bp | TCTTTGCCCATGAGGCGGCCTCAGCCTGCCCCCTGTGGGCTTTTGATGGCATGGTCACAGTGCCAGGGGTaGTGTGTCACATCCAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: SLPMRRPQPAPCGLLMAWSQCQG*CVTSRS Trigger: GGACCTGGATGTGACACACAACCCCTGGCACTGTGA...CCATGCCATCAAAAGCCCACAGGGGGCAGGCTGAGGCCGCCTCATGGGCAAAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS GCA 90 bp | AGCTGGCGAGTGTGCGCTGGTATCACGGGCAGGGCTGTGAGGCCTTaGCCCTCACAGTTCACCTTTAACCCCATGGTTTCCAAGGACTGG | + |
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Preference number: 5 (lower is better) Translates to: SWRVCAGITGRAVRP*PSQFTFNPMVSKDW Trigger: CCAGTCCTTGGAAACCATGGGGTTAAAGGTGAACTGTGAGGGGCAAGGCCTCACAGCCCTGCCCGTGATACCAGCGCACACTCGCCAGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS CCA 72 bp | GGCAGGTACAGGGCCTGGGGCAAGCCTGAGTATCTGTaGTCGCAGGCCAGAGCAGAAACAGGAGGCCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: GRYRAWGKPEYL*SQARAETGGPR Trigger: CCTGGGGCCTCCTGTTTCTGCTCTGGCCTGCGACCACAGATACTCAGGCTTGCCCCAGGCCCTGTACCTGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS CCA 72 bp | GCTATTGTTGGCCAGCAGGAGCTGGCGAGTGTGCGCTaGTATCACGGGCAGGGCTGTGAGGCCTTGCCCCTC | + |
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Preference number: 6 (lower is better) Translates to: AIVGQQELASVR*YHGQGCEALPL Trigger: GAGGGGCAAGGCCTCACAGCCCTGCCCGTGATACCAGCGCACACTCGCCAGCTCCTGCTGGCCAACAATAGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS GCA 72 bp | CGCCTGGTGGCCAAGTCAGGGCTGGCACAGTACACATaGATTAGGGCCTCGGGCATGTGGTCCTCCAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: RLVAKSGLAQYT*IRASGMWSSSQ Trigger: CTGGCTGGAGGACCACATGCCCGAGGCCCTAATGCATGTGTACTGTGCCAGCCCTGACTTGGCCACCAGGCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS CCA 72 bp | GGCACTGAACGCAGGCTATTGTTGGCCAGCAGGAGCTaGCGAGTGTGCGCTGGTATCACGGGCAGGGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: GTERRLLLASRS*RVCAGITGRAV Trigger: CACAGCCCTGCCCGTGATACCAGCGCACACTCGCCAGCTCCTGCTGGCCAACAATAGCCTGCGTTCAGTGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS CAA 90 bp | GGCAAGTGGTCGAAGGCACCTGGTGGCACTGAACGCAGGCTATTGTaGGCCAGCAGGAGCTGGCGAGTGTGCGCTGGTATCACGGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: GKWSKAPGGTERRLL*ASRSWRVCAGITGR Trigger: CCTGCCCGTGATACCAGCGCACACTCGCCAGCTCCTGCTGGCCAACAATAGCCTGCGTTCAGTGCCACCAGGTGCCTTCGACCACTTGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS TCA 72 bp | GCTGGCGAGTGTGCGCTGGTATCACGGGCAGGGCTGTaGGGCCTTGCCCCTCACAGTTCACCTTTAACCCCA | + |
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Preference number: 6 (lower is better) Translates to: AGECALVSRAGL*GLAPHSSPLTP Trigger: TGGGGTTAAAGGTGAACTGTGAGGGGCAAGGCCTCACAGCCCTGCCCGTGATACCAGCGCACACTCGCCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS TCA 72 bp | TCCAAGGACTGGCAGGTACAGGGCCTGGGGCAAGCCTaGGTATCTGTGGTCGCAGGCCAGAGCAGAAACAGG | + |
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Preference number: 6 (lower is better) Translates to: SKDWQVQGLGQA*VSVVAGQSRNR Trigger: CCTGTTTCTGCTCTGGCCTGCGACCACAGATACTCAGGCTTGCCCCAGGCCCTGTACCTGCCAGTCCTTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS CCA 72 bp | CGAAGGCACCTGGTGGCACTGAACGCAGGCTATTGTTaGCCAGCAGGAGCTGGCGAGTGTGCGCTGGTATCA | + |
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Preference number: 6 (lower is better) Translates to: RRHLVALNAGYC*PAGAGECALVS Trigger: TGATACCAGCGCACACTCGCCAGCTCCTGCTGGCCAACAATAGCCTGCGTTCAGTGCCACCAGGTGCCTTCG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS CAA 72 bp | TCGAAGGCACCTGGTGGCACTGAACGCAGGCTATTGTaGGCCAGCAGGAGCTGGCGAGTGTGCGCTGGTATC | + |
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Preference number: 6 (lower is better) Translates to: SKAPGGTERRLL*ASRSWRVCAGI Trigger: GATACCAGCGCACACTCGCCAGCTCCTGCTGGCCAACAATAGCCTGCGTTCAGTGCCACCAGGTGCCTTCGA 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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| CDS GCA 72 bp | GTGTGCGCTGGTATCACGGGCAGGGCTGTGAGGCCTTaGCCCTCACAGTTCACCTTTAACCCCATGGTTTCC | + |
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Preference number: 6 (lower is better) Translates to: VCAGITGRAVRP*PSQFTFNPMVS Trigger: GGAAACCATGGGGTTAAAGGTGAACTGTGAGGGGCAAGGCCTCACAGCCCTGCCCGTGATACCAGCGCACAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032133.5 |
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