Pregenerated sensors for GNRH1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015812Ensembl transcript IDs: ENSMUST00000111095.4, ENSMUST00000223929.2, ENSMUST00000223951.2
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CACAACAAACTACTTTATTATGAAATCTACGCTGCTGGGTATAAAAACGCTCAATATACTCGGGTGTTGTaGATCCACCTGGGCCAGTGC | + |
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Preference number: 2 (lower is better) Translates to: HNKLLYYEIYAAGYKNAQYTRVL*IHLGQC Trigger: GCACTGGCCCAGGTGGATCCACAACACCCGAGTATA...TTGAGCGTTTTTATACCCAGCAGCGTAGATTTCATAATAAAGTAGTTTGTTGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000111095.4 ENSMUST00000223929.2 |
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| CDS-3UTR TCA 90 bp | TACGCTGCTGGGTATAAAAACGCTCAAGCTTACACAATTACAGAGCCATTAACACAGATCCCTGAGGGGTaGACGGGGCCAGTGGACAGT | + |
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Preference number: 4 (lower is better) Translates to: YAAGYKNAQAYTITEPLTQIPEG*TGPVDS Trigger: ACTGTCCACTGGCCCCGTTCACCCCTCAGGGATCTG...TGTTAATGGCTCTGTAATTGTGTAAGCTTGAGCGTTTTTATACCCAGCAGCGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000111095.4 ENSMUST00000223929.2 |
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| CDS-3UTR TCA 90 bp | GGGTATAAAAACGCTCAAGCTTACACAATTACAGAGCCATTAACAGGTCACAAGCAGATCCCTGAGGGGTaGACGGGGCCAGTGGACAGT | + |
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Preference number: 4 (lower is better) Translates to: GYKNAQAYTITEPLTGHKQIPEG*TGPVDS Trigger: ACTGTCCACTGGCCCCGTTCACCCCTCAGGGATCTG...CTTGTGACCTGTTAATGGCTCTGTAATTGTGTAAGCTTGAGCGTTTTTATACCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000111095.4 ENSMUST00000223929.2 |
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| CDS-3UTR TCA 90 bp | TACGCTGCTGGGTATAAAAACGCTCAAGCTTACACAATTACAGAGCCATTAACATGGGGTTCTGCCATTTaGTCCACCTCCTTGCCCATC | + |
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Preference number: 4 (lower is better) Translates to: YAAGYKNAQAYTITEPLTWGSAI*STSLPI Trigger: GATGGGCAAGGAGGTGGATCAAATGGCAGAACCCCA...TGTTAATGGCTCTGTAATTGTGTAAGCTTGAGCGTTTTTATACCCAGCAGCGTA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111095.4 |
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| CDS-3UTR GCA 90 bp | GGGTATAAAAACGCTCAAGCTTACACAATTACAGAGCCATTAACAGGTCACAAGGAAGTGCTGGGGTTCTaGCATTTGATCCACCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: GYKNAQAYTITEPLTGHKEVLGF*HLIHLL Trigger: AAGGAGGTGGATCAAATGGCAGAACCCCAGCACTTC...CTTGTGACCTGTTAATGGCTCTGTAATTGTGTAAGCTTGAGCGTTTTTATACCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111095.4 ENSMUST00000223929.2 |
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| CDS-3UTR GCA 90 bp | TATAAAAACGCTCAAGCTTACACAATTACAGAGCCATTAACAGGTCACAAGCCTGAAGTGCTGGGGTTCTaGCATTTGATCCACCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: YKNAQAYTITEPLTGHKPEVLGF*HLIHLL Trigger: AAGGAGGTGGATCAAATGGCAGAACCCCAGCACTTC...AGGCTTGTGACCTGTTAATGGCTCTGTAATTGTGTAAGCTTGAGCGTTTTTATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111095.4 ENSMUST00000223929.2 |
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| CDS-3UTR GCA 90 bp | GGGTATAAAAACGCTCAAGCTTACACAATTACAGAGCCATTAACAGGTCACAAGTTTGATCCACCTCCTTaGCCATCTCTTGGAAAGACT | + |
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Preference number: 4 (lower is better) Translates to: GYKNAQAYTITEPLTGHKFDPPP*PSLGKT Trigger: AGTCTTTCCAAGAGATGGGCAAGGAGGTGGATCAAA...CTTGTGACCTGTTAATGGCTCTGTAATTGTGTAAGCTTGAGCGTTTTTATACCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111095.4 |
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| CDS-3UTR CCA 90 bp | GGGTATAAAAACGCTCAAGCTTACACAATTACAGAGCCATTAACAGGTCACAAGACATCTTCTTCTGCCTaGCTTCCTCTTCAATCAGAC | + |
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Preference number: 4 (lower is better) Translates to: GYKNAQAYTITEPLTGHKTSSSA*LPLQSD Trigger: GTCTGATTGAAGAGGAAGCCAGGCAGAAGAAGATGT...CTTGTGACCTGTTAATGGCTCTGTAATTGTGTAAGCTTGAGCGTTTTTATACCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000111095.4 ENSMUST00000223929.2 |
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| CDS-3UTR CCA 90 bp | CACAACAAACTACTTTATTATGAAATCTACGCTGCTGGGTATAAAAACGCTCAAACATCTTCTTCTGCCTaGCTTCCTCTTCAATCAGAC | + |
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Preference number: 4 (lower is better) Translates to: HNKLLYYEIYAAGYKNAQTSSSA*LPLQSD Trigger: GTCTGATTGAAGAGGAAGCCAGGCAGAAGAAGATGT...TTGAGCGTTTTTATACCCAGCAGCGTAGATTTCATAATAAAGTAGTTTGTTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000111095.4 ENSMUST00000223929.2 |
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| CDS TCA 90 bp | TGGCTTCCTCTTCAATCAGACTTTCCAGAGCTCCTCGCAGATCCCTaGGGGGTGAACGGGGCCAGTGGACAGTACATTCGAAGTGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: WLPLQSDFPELLADP*GVNGASGQYIRSAG Trigger: CCCAGCACTTCGAATGTACTGTCCACTGGCCCCGTTCACCCCTCAGGGATCTGCGAGGAGCTCTGGAAAGTCTGATTGAAGAGGAAGCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000111095.4 ENSMUST00000223929.2 ENSMUST00000223951.2 |
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| CDS-3UTR CAA 90 bp | ATCCACAACAAACTACTTTATTATGAAATCTACGCTGCTGGGTATAAAAACGCTCTCCTTGCCCATCTCTaGGAAAGACTCAACCAAGTG | + |
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Preference number: 5 (lower is better) Translates to: IHNKLLYYEIYAAGYKNALLAHL*ERLNQV Trigger: CACTTGGTTGAGTCTTTCCAAGAGATGGGCAAGGAG...AGCGTTTTTATACCCAGCAGCGTAGATTTCATAATAAAGTAGTTTGTTGTGGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111095.4 |
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| CDS TCA 72 bp | CAGACTTTCCAGAGCTCCTCGCAGATCCCTGAGGGGTaGACGGGGCCAGTGGACAGTACATTCGAAGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: QTFQSSSQIPEG*TGPVDSTFEVL Trigger: CAGCACTTCGAATGTACTGTCCACTGGCCCCGTTCACCCCTCAGGGATCTGCGAGGAGCTCTGGAAAGTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000111095.4 ENSMUST00000223929.2 ENSMUST00000223951.2 |
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| CDS CCA 72 bp | TTCCCCCAGGGCGCAACCCATAGGACCAGTGCTGGCTaGAGCAGCCTTCCAAACACACAGTCAGCAGTAGAA | + |
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Preference number: 6 (lower is better) Translates to: FPQGATHRTSAG*SSLPNTQSAVE Trigger: TTCTACTGCTGACTGTGTGTTTGGAAGGCTGCTCCAGCCAGCACTGGTCCTATGGGTTGCGCCCTGGGGGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000111095.4 ENSMUST00000223951.2 |
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| CDS TCA 72 bp | CTTCAATCAGACTTTCCAGAGCTCCTCGCAGATCCCTaGGGGGTGAACGGGGCCAGTGGACAGTACATTCGA | + |
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Preference number: 6 (lower is better) Translates to: LQSDFPELLADP*GVNGASGQYIR Trigger: TCGAATGTACTGTCCACTGGCCCCGTTCACCCCTCAGGGATCTGCGAGGAGCTCTGGAAAGTCTGATTGAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000111095.4 ENSMUST00000223929.2 ENSMUST00000223951.2 |
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| CDS GCA 72 bp | GGGCCAGTGGACAGTACATTCGAAGTGCTGGGGTTCTaGCATTTGATCCACCTCCTTGCCCATCTCTTGGAA | + |
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Preference number: 6 (lower is better) Translates to: GPVDSTFEVLGF*HLIHLLAHLLE Trigger: TTCCAAGAGATGGGCAAGGAGGTGGATCAAATGGCAGAACCCCAGCACTTCGAATGTACTGTCCACTGGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111095.4 ENSMUST00000223951.2 |
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| CDS CAA 90 bp | ACGGGGCCAGTGGACAGTACATTCGAAGTGCTGGGGTTCTGCCATTaGATCCACCTCCTTGCCCATCTCTTGGAAAGACTCAACCAAGTG | + |
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Preference number: 6 (lower is better) Translates to: TGPVDSTFEVLGFCH*IHLLAHLLERLNQV Trigger: CACTTGGTTGAGTCTTTCCAAGAGATGGGCAAGGAGGTGGATCAAATGGCAGAACCCCAGCACTTCGAATGTACTGTCCACTGGCCCCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111095.4 ENSMUST00000223951.2 |
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| CDS GCA 72 bp | CGAAGTGCTGGGGTTCTGCCATTTGATCCACCTCCTTaGCCATCTCTTGGAAAGACTCAACCAAGTGTTCAG | + |
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Preference number: 6 (lower is better) Translates to: RSAGVLPFDPPP*PSLGKTQPSVQ Trigger: CTGAACACTTGGTTGAGTCTTTCCAAGAGATGGGCAAGGAGGTGGATCAAATGGCAGAACCCCAGCACTTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111095.4 ENSMUST00000223951.2 |
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| CDS CAA 72 bp | GTGGACAGTACATTCGAAGTGCTGGGGTTCTGCCATTaGATCCACCTCCTTGCCCATCTCTTGGAAAGACTC | + |
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Preference number: 6 (lower is better) Translates to: VDSTFEVLGFCH*IHLLAHLLERL Trigger: GAGTCTTTCCAAGAGATGGGCAAGGAGGTGGATCAAATGGCAGAACCCCAGCACTTCGAATGTACTGTCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111095.4 ENSMUST00000223951.2 |
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| CDS TCA 72 bp | TGGACAGTACATTCGAAGTGCTGGGGTTCTGCCATTTaGTCCACCTCCTTGCCCATCTCTTGGAAAGACTCA | + |
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Preference number: 6 (lower is better) Translates to: WTVHSKCWGSAI*STSLPISWKDS Trigger: TGAGTCTTTCCAAGAGATGGGCAAGGAGGTGGATCAAATGGCAGAACCCCAGCACTTCGAATGTACTGTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111095.4 ENSMUST00000223951.2 |
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| CDS CAA 72 bp | GGGTTCTGCCATTTGATCCACCTCCTTGCCCATCTCTaGGAAAGACTCAACCAAGTGTTCAGTGTTTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: GFCHLIHLLAHL*ERLNQVFSVSL Trigger: AAGAGAAACACTGAACACTTGGTTGAGTCTTTCCAAGAGATGGGCAAGGAGGTGGATCAAATGGCAGAACCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111095.4 ENSMUST00000223951.2 |
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