Pregenerated sensors for GNPNAT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037722Ensembl transcript IDs: ENSMUST00000046191.9, ENSMUST00000226276.2, ENSMUST00000227468.2, ENSMUST00000228451.2
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AGCATCCTCCCAGGTTACTACACACTGGCACACCACAGTGTACTTCAGTCTAGTGGGAGCTCACTGGGCTaGAGCAACAAAAATGAACTC | + |
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Preference number: 2 (lower is better) Translates to: SILPGYYTLAHHSVLQSSGSSLG*SNKNEL Trigger: GAGTTCATTTTTGTTGCTGCAGCCCAGTGAGCTCCC...ACTAGACTGAAGTACACTGTGGTGTGCCAGTGTGTAGTAACCTGGGAGGATGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000046191.9 ENSMUST00000227468.2 ENSMUST00000228451.2 |
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| 3UTR-3UTR TCA 90 bp | TGTGCCATTGTACTTGCAATGATTGAGAAGCTCATTCATATTCCTTATGCCTCACTGGGAGCTGCTCATTaGCAAATGAAAAGGACCCTG | + |
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Preference number: 2 (lower is better) Translates to: CAIVLAMIEKLIHIPYASLGAAH*QMKRTL Trigger: CAGGGTCCTTTTCATTTGTCAATGAGCAGCTCCCAG...TGAGGCATAAGGAATATGAATGAGCTTCTCAATCATTGCAAGTACAATGGCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| 3UTR-3UTR CCA 90 bp | TGTGCCATTGTACTTGCAATGATTGAGAAGCTCATTCATATTCCTTATGCCTCAGGTTCCAGGATATCCTaGGCACCCTGTCTCAACAAA | + |
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Preference number: 2 (lower is better) Translates to: CAIVLAMIEKLIHIPYASGSRIS*APCLNK Trigger: TTTGTTGAGACAGGGTGCCCAGGATATCCTGGAACC...TGAGGCATAAGGAATATGAATGAGCTTCTCAATCATTGCAAGTACAATGGCACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| 3UTR-3UTR GCA 90 bp | ACAACAAATATGTATCTGGTGGTCATGATAACAGAAGTGTCCAATGAGAAATGGGGGAGCTCACTGGGCTaGAGCAACAAAAATGAACTC | + |
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Preference number: 2 (lower is better) Translates to: TTNMYLVVMITEVSNEKWGSSLG*SNKNEL Trigger: GAGTTCATTTTTGTTGCTGCAGCCCAGTGAGCTCCC...CCATTTCTCATTGGACACTTCTGTTATCATGACCACCAGATACATATTTGTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| 3UTR-3UTR CCA 90 bp | GCAATGATTGAGAAGCTCATTCATATTCCTTATGCCTCAAGACCTCTTTGTCTTCAGGTTACTACACACTaGCACACCACAGTGTACTTC | + |
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Preference number: 2 (lower is better) Translates to: AMIEKLIHIPYASRPLCLQVTTH*HTTVYF Trigger: GAAGTACACTGTGGTGTGCCAGTGTGTAGTAACCTG...AAGACAAAGAGGTCTTGAGGCATAAGGAATATGAATGAGCTTCTCAATCATTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| 3UTR-3UTR TCA 90 bp | ATTGAGAAGCTCATTCATATTCCTTATGCCTCAAGACCTCTTTGTCTTCTGGGTCTGCTCATTGACAAATaGAAAGGACCCTGGATAATT | + |
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Preference number: 2 (lower is better) Translates to: IEKLIHIPYASRPLCLLGLLIDK*KGPWII Trigger: AATTATCCAGGGTCCTTTTCATTTGTCAATGAGCAG...ACCCAGAAGACAAAGAGGTCTTGAGGCATAAGGAATATGAATGAGCTTCTCAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| 3UTR-3UTR CCA 90 bp | GTAACATATGTGTCTCTTTACCTCTGTATAGGCAATTGCTTACGTTATTCTACTGTGACAGGTGGCAGGTaGTACAGTATCTGCACAAAA | + |
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Preference number: 2 (lower is better) Translates to: VTYVSLYLCIGNCLRYSTVTGGR*YSICTK Trigger: TTTTGTGCAGATACTGTACCACCTGCCACCTGTCAC...AGTAGAATAACGTAAGCAATTGCCTATACAGAGGTAAAGAGACACATATGTTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| 3UTR CAA 90 bp | TTCACAATCCTAAAGCATAACTTCACGTCAGTATTTACAGTATCTTaGTCCATTCAACAACACTCCAATGAGCAAATAGTAGGAAATAGC | + |
|
Preference number: 2 (lower is better) Translates to: FTILKHNFTSVFTVS*SIQQHSNEQIVGNS Trigger: GCTATTTCCTACTATTTGCTCATTGGAGTGTTGTTGAATGGACAAAGATACTGTAAATACTGACGTGAAGTTATGCTTTAGGATTGTGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| 3UTR TCA 72 bp | GGTACATGCCTGGAATACCAGTTCTTAGAACATGTGTaGGGGGTTCCAGGATATCCTGGGCACCCTGTCTCA | + |
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Preference number: 3 (lower is better) Translates to: GTCLEYQFLEHV*GVPGYPGHPVS Trigger: TGAGACAGGGTGCCCAGGATATCCTGGAACCCCTCACACATGTTCTAAGAACTGGTATTCCAGGCATGTACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| 3UTR TCA 72 bp | ACGGAAACCAGGGTAGCAGCTCTGGGAGCTGCTCATTaGCAAATGAAAAGGACCCTGGATAATTCTAATACC | + |
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Preference number: 3 (lower is better) Translates to: TETRVAALGAAH*QMKRTLDNSNT Trigger: GGTATTAGAATTATCCAGGGTCCTTTTCATTTGTCAATGAGCAGCTCCCAGAGCTGCTACCCTGGTTTCCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| 3UTR CCA 72 bp | TTTGTATTCCCAGCATCCTCCCAGGTTACTACACACTaGCACACCACAGTGTACTTCAGTCTAGTAGTTAGG | + |
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Preference number: 3 (lower is better) Translates to: FVFPASSQVTTH*HTTVYFSLVVR Trigger: CCTAACTACTAGACTGAAGTACACTGTGGTGTGCCAGTGTGTAGTAACCTGGGAGGATGCTGGGAATACAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000046191.9 ENSMUST00000227468.2 ENSMUST00000228451.2 |
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| 3UTR TCA 72 bp | CAAATGAAAAGGACCCTGGATAATTCTAATACCATGTaGCAGGTGGCAGGTGGTACAGTATCTGCACAAAAC | + |
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Preference number: 3 (lower is better) Translates to: QMKRTLDNSNTM*QVAGGTVSAQN Trigger: GTTTTGTGCAGATACTGTACCACCTGCCACCTGTCACATGGTATTAGAATTATCCAGGGTCCTTTTCATTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| 3UTR CCA 72 bp | AAAGGACCCTGGATAATTCTAATACCATGTGACAGGTaGCAGGTGGTACAGTATCTGCACAAAACTTTACAC | + |
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Preference number: 3 (lower is better) Translates to: KGPWIILIPCDR*QVVQYLHKTLH Trigger: GTGTAAAGTTTTGTGCAGATACTGTACCACCTGCCACCTGTCACATGGTATTAGAATTATCCAGGGTCCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| 3UTR CCA 72 bp | TTCATATTCCTTATGCCTCAAGACCTCTTTGTCTTCTaGGTAGAAGTAACCCAGCTTTACTCCCACAGATTA | + |
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Preference number: 3 (lower is better) Translates to: FIFLMPQDLFVF*VEVTQLYSHRL Trigger: TAATCTGTGGGAGTAAAGCTGGGTTACTTCTACCCAGAAGACAAAGAGGTCTTGAGGCATAAGGAATATGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| 3UTR CCA 72 bp | CTGGTGGTCATGATAACAGAAGTGTCCAATGAGAAATaGTGCACCTTAAGTCTATTTAGATGTATGAGACAA | + |
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Preference number: 3 (lower is better) Translates to: LVVMITEVSNEK*CTLSLFRCMRQ Trigger: TTGTCTCATACATCTAAATAGACTTAAGGTGCACCATTTCTCATTGGACACTTCTGTTATCATGACCACCAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| 3UTR-3UTR CAA 90 bp | GTAACATATGTGTCTCTTTACCTCTGTATAGGCAATTGCTTACGTTATTCTACTTCGTTATTTAAGCTGTaGTACCTTGTCCCATTTTTC | + |
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Preference number: 3 (lower is better) Translates to: VTYVSLYLCIGNCLRYSTSLFKL*YLVPFF Trigger: GAAAAATGGGACAAGGTACAACAGCTTAAATAACGA...AGTAGAATAACGTAAGCAATTGCCTATACAGAGGTAAAGAGACACATATGTTAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| 3UTR GCA 72 bp | GTGGTCATGATAACAGAAGTGTCCAATGAGAAATGGTaGACCTTAAGTCTATTTAGATGTATGAGACAAAAA | + |
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Preference number: 3 (lower is better) Translates to: VVMITEVSNEKW*TLSLFRCMRQK Trigger: TTTTTGTCTCATACATCTAAATAGACTTAAGGTGCACCATTTCTCATTGGACACTTCTGTTATCATGACCAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046191.9 |
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| CDS-3UTR GCA 90 bp | TGGCACACCACAGTGTACTTCAGTCTAGTAGTTAGGGAGCTCACTGGGCTGCAGTCTACTCTCCCTCTCTaGAAACAATCACAGTACTTA | + |
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Preference number: 4 (lower is better) Translates to: WHTTVYFSLVVRELTGLQSTLPL*KQSQYL Trigger: TAAGTACTGTGATTGTTTGCAGAGAGGGAGAGTAGA...CTGCAGCCCAGTGAGCTCCCTAACTACTAGACTGAAGTACACTGTGGTGTGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228451.2 |
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| CDS-3UTR CCA 90 bp | CCCTTTATTTGTATTCCCAGCATCCTCCCAGGTTACTACACACTGGCACACCACTTCTTTGAGCAAACTTaGGTCAAACATGGGAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: PFICIPSILPGYYTLAHHFFEQT*VKHGSF Trigger: GAAACTCCCATGTTTGACCCAAGTTTGCTCAAAGAA...GTGGTGTGCCAGTGTGTAGTAACCTGGGAGGATGCTGGGAATACAAATAAAGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046191.9 ENSMUST00000227468.2 |
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| CDS-3UTR CCA 90 bp | CTCCCCTTTATTTGTATTCCCAGCATCCTCCCAGGTTACTACACACTGGCACACTTCTTTGAGCAAACTTaGGTCAAACATGGGAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: LPFICIPSILPGYYTLAHFFEQT*VKHGSF Trigger: GAAACTCCCATGTTTGACCCAAGTTTGCTCAAAGAA...GTGTGCCAGTGTGTAGTAACCTGGGAGGATGCTGGGAATACAAATAAAGGGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046191.9 ENSMUST00000227468.2 |
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| CDS CCA 72 bp | TTCATATGCTCAAAAGATTCAACGGTCAGCACTAGGTaGTCCACACCTTTAAAGTCGTCTGTTAGTACAGAA | + |
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Preference number: 6 (lower is better) Translates to: FICSKDSTVSTR*STPLKSSVSTE Trigger: TTCTGTACTAACAGACGACTTTAAAGGTGTGGACCACCTAGTGCTGACCGTTGAATCTTTTGAGCATATGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226276.2 |
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