RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GNE (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028479

Ensembl transcript IDs: ENSMUST00000030201.14, ENSMUST00000102936.9, ENSMUST00000128439.8, ENSMUST00000133709.8, ENSMUST00000140724.3, ENSMUST00000144985.8, ENSMUST00000172533.8, ENSMUST00000173234.8, ENSMUST00000173274.2, ENSMUST00000173383.2, ENSMUST00000174522.8

Found 421 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCATGGCGGCACAGTTGCCGTCATTGTCCACCCACACGGGGAGATaGAGGGTGTCGGAGAGGGGTGTCCTGAGGTCCACGGAGTTCCAT +
Preference number: 1 (lower is better)
Translates to: AMAAQLPSLSTHTGR*RVSERGVLRSTEFH
Trigger: ATGGAACTCCGTGGACCTCAGGACACCCCTCTCCGACACCCTGCATCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGCCGCCATGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR GCA 90 bp CCCGGGAGACCTAGTGGATCCTGCGCGTTGTGTAGTCCAGAACCATaGTGGCTGCGCCAAGCAGGGCCGGGTCCACCAAGTCTGAGACCA +
Preference number: 1 (lower is better)
Translates to: PGRPSGSCALCSPEP*WLRQAGPGPPSLRP
Trigger: TGGTCTCAGACTTGGTGGACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCCGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR GCA 90 bp CCCGAGTCTCTGTCCGTGTCCGTTCCCGGGAGACCTAGTGGATCCTaGGCGTTGTGTAGTCCAGAACCATGCTGGCTGCGCCAAGCAGGG +
Preference number: 1 (lower is better)
Translates to: PESLSVSVPGRPSGS*ALCSPEPCWLRQAG
Trigger: CCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCCGGGAACGGACACGGACAGAGACTCGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR GCA 90 bp AGCAGGGCCGGGTCCACCAAGTCTGAGACCACCACGTCCACATCCTaGACGGAGGACAAGGCTTGCTGGCGGATGACGTCCTTCACGATG +
Preference number: 1 (lower is better)
Translates to: SRAGSTKSETTTSTS*TEDKACWRMTSFTM
Trigger: CATCGTGAAGGACGTCATCCGCCAGCAAGCCTTGTCCTCCGTGCAGGATGTGGACGTGGTGGTCTCAGACTTGGTGGACCCGGCCCTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 90 bp CTTGGCTTCCAGGCAGCTGAGCTGCCTGACATGGGTGCTGGGGACTaGCAGGAGCAGGGCAGGCTCTTAACCACTGAGCTGTCTCAGCAG +
Preference number: 1 (lower is better)
Translates to: LGFQAAELPDMGAGD*QEQGRLLTTELSQQ
Trigger: CTGCTGAGACAGCTCAGTGGTTAAGAGCCTGCCCTGCTCCTGCCAGTCCCCAGCACCCATGTCAGGCAGCTCAGCTGCCTGGAAGCCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 90 bp GGGAGACCTAGTGGATCCTGCGCGTTGTGTAGTCCAGAACCATGCTaGCTGCGCCAAGCAGGGCCGGGTCCACCAAGTCTGAGACCACCA +
Preference number: 1 (lower is better)
Translates to: GRPSGSCALCSPEPC*LRQAGPGPPSLRPP
Trigger: TGGTGGTCTCAGACTTGGTGGACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 90 bp TCCCTCTGCAAGGCCATTCCAGAGGCGTACGCTTCGATGCACCCATaGCTTCCACAGGAGCAGTCAGGACCGTCCAGGGACACCACGAGA +
Preference number: 1 (lower is better)
Translates to: SLCKAIPEAYASMHP*LPQEQSGPSRDTTR
Trigger: TCTCGTGGTGTCCCTGGACGGTCCTGACTGCTCCTGTGGAAGCCATGGGTGCATCGAAGCGTACGCCTCTGGAATGGCCTTGCAGAGGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR TCA 90 bp CCACCACGTCCACATCCTGCACGGAGGACAAGGCTTGCTGGCGGATaGCGTCCTTCACGATGTGGATGTAGTGACTGGCCAGGACTCCAG +
Preference number: 1 (lower is better)
Translates to: PPRPHPARRTRLAGG*RPSRCGCSDWPGLQ
Trigger: CTGGAGTCCTGGCCAGTCACTACATCCACATCGTGAAGGACGTCATCCGCCAGCAAGCCTTGTCCTCCGTGCAGGATGTGGACGTGGTGG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR GCA 90 bp GTCCTTTTCCTTGGCCGAACTTCCTCTCTGCCATGGCGGCACAGTTaGCGTCATTGTCCACCCACACGGGGAGATGCAGGGTGTCGGAGA +
Preference number: 1 (lower is better)
Translates to: VLFLGRTSSLPWRHS*RHCPPTRGDAGCRR
Trigger: TCTCCGACACCCTGCATCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGTTCGGCCAAGGAAAAGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR TCA 90 bp GAACATTCTCCCCGGTTTCTCTTCCTATCTGCCTTGTGCCCAGGTTaGTCACGGGTGTTCCGAAAGCGCCAACCTCTCGCACGCCGCAGC +
Preference number: 1 (lower is better)
Translates to: EHSPRFLFLSALCPG*SRVFRKRQPLARRS
Trigger: GCTGCGGCGTGCGAGAGGTTGGCGCTTTCGGAACACCCGTGATCAACCTGGGCACAAGGCAGATAGGAAGAGAAACCGGGGAGAATGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133709.8
ENSMUST00000174522.8
3UTR GCA 90 bp CGTCACGAAGTTCTCCTGTCCTTTTCCTTGGCCGAACTTCCTCTCTaGCATGGCGGCACAGTTGCCGTCATTGTCCACCCACACGGGGAG +
Preference number: 1 (lower is better)
Translates to: RHEVLLSFSLAELPL*HGGTVAVIVHPHGE
Trigger: CTCCCCGTGTGGGTGGACAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGTTCGGCCAAGGAAAAGGACAGGAGAACTTCGTGACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR GCA 90 bp TCTTTGCTTCCCTCTGCAAGGCCATTCCAGAGGCGTACGCTTCGATaGACCCATGGCTTCCACAGGAGCAGTCAGGACCGTCCAGGGACA +
Preference number: 1 (lower is better)
Translates to: SLLPSARPFQRRTLR*THGFHRSSQDRPGT
Trigger: TGTCCCTGGACGGTCCTGACTGCTCCTGTGGAAGCCATGGGTGCATCGAAGCGTACGCCTCTGGAATGGCCTTGCAGAGGGAAGCAAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 90 bp ACCTCTCGCACGCCGCAGCTGCTATTCCCAATCATGCAGCCAGCGTaGGCGACCAGCTGTATGAACTGGTCAAACGGGACGTGCTTGACT +
Preference number: 1 (lower is better)
Translates to: TSRTPQLLFPIMQPA*ATSCMNWSNGTCLT
Trigger: AGTCAAGCACGTCCCGTTTGACCAGTTCATACAGCTGGTCGCCCACGCTGGCTGCATGATTGGGAATAGCAGCTGCGGCGTGCGAGAGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000133709.8
ENSMUST00000174522.8
3UTR TCA 90 bp GGGTGTCCTGAGGTCCACGGAGTTCCATTCCTGGATCAGCTTGGTTaGATGCAGCACAACTCCTTCCTGGGGATTCACGCGGCCACCTGT +
Preference number: 1 (lower is better)
Translates to: GCPEVHGVPFLDQLG*MQHNSFLGIHAATC
Trigger: ACAGGTGGCCGCGTGAATCCCCAGGAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATGGAACTCCGTGGACCTCAGGACACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR GCA 90 bp GTCCTGAGGTCCACGGAGTTCCATTCCTGGATCAGCTTGGTTGAATaGAGCACAACTCCTTCCTGGGGATTCACGCGGCCACCTGTGGAG +
Preference number: 1 (lower is better)
Translates to: VLRSTEFHSWISLVE*STTPSWGFTRPPVE
Trigger: CTCCACAGGTGGCCGCGTGAATCCCCAGGAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATGGAACTCCGTGGACCTCAGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR CCA 90 bp CGAAGTTCTCCTGTCCTTTTCCTTGGCCGAACTTCCTCTCTGCCATaGCGGCACAGTTGCCGTCATTGTCCACCCACACGGGGAGATGCA +
Preference number: 1 (lower is better)
Translates to: RSSPVLFLGRTSSLP*RHSCRHCPPTRGDA
Trigger: TGCATCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGTTCGGCCAAGGAAAAGGACAGGAGAACTTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 90 bp CCTGTCCCCGTGATGAGCGTCACGAAGTTCTCCTGTCCTTTTCCTTaGCCGAACTTCCTCTCTGCCATGGCGGCACAGTTGCCGTCATTG +
Preference number: 1 (lower is better)
Translates to: PVPVMSVTKFSCPFP*PNFLSAMAAQLPSL
Trigger: CAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGTTCGGCCAAGGAAAAGGACAGGAGAACTTCGTGACGCTCATCACGGGGACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 90 bp ATGCTCTGGGCCTTCACGTTGCCCAGCTTGGCAGCCTGGATGAGATaGAGGGCACCCACAGCTTCGTCTTTTGGTACTGACATCCCTTCC +
Preference number: 1 (lower is better)
Translates to: MLWAFTLPSLAAWMR*RAPTASSFGTDIPS
Trigger: GGAAGGGATGTCAGTACCAAAAGACGAAGCTGTGGGTGCCCTCCATCTCATCCAGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGAGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR TCA 90 bp TCGGTACGTGCTCCTCAGTGGTGCTGTTTGCTGGTGCAGTCTGGGTaGGTCCGTGGCCTGCCCTATTTGCATTCACTTCTGCTGCTGTTG +
Preference number: 1 (lower is better)
Translates to: SVRAPQWCCLLVQSG*VRGLPYLHSLLLLL
Trigger: CAACAGCAGCAGAAGTGAATGCAAATAGGGCAGGCCACGGACTCACCCAGACTGCACCAGCAAACAGCACCACTGAGGAGCACGTACCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR TCA 90 bp GTAAGATGCTCTGGGCCTTCACGTTGCCCAGCTTGGCAGCCTGGATaGGATGGAGGGCACCCACAGCTTCGTCTTTTGGTACTGACATCC +
Preference number: 1 (lower is better)
Translates to: VRCSGPSRCPAWQPG*DGGHPQLRLLVLTS
Trigger: GGATGTCAGTACCAAAAGACGAAGCTGTGGGTGCCCTCCATCTCATCCAGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGAGCATCTTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR GCA 90 bp AGACATCCAGCCCTAGGCACTGAACAGGACTCTTGGGCTGTCCCTTaGAAGACAGCCACTGTTGGACTAGCTGAACCACAGCCTGTGAGC +
Preference number: 1 (lower is better)
Translates to: RHPALGTEQDSWAVP*KTATVGLAEPQPVS
Trigger: GCTCACAGGCTGTGGTTCAGCTAGTCCAACAGTGGCTGTCTTGCAAGGGACAGCCCAAGAGTCCTGTTCAGTGCCTAGGGCTGGATGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 90 bp GTGGGCGACCAGCTGTATGAACTGGTCAAACGGGACGTGCTTGACTaGACGGAAATTGGGGTGATGCTCGATGCCCTTCTTCCGCATCAC +
Preference number: 1 (lower is better)
Translates to: VGDQLYELVKRDVLD*TEIGVMLDALLPHH
Trigger: GTGATGCGGAAGAAGGGCATCGAGCATCACCCCAATTTCCGTGCAGTCAAGCACGTCCCGTTTGACCAGTTCATACAGCTGGTCGCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133709.8
3UTR CCA 90 bp TGCTCCTCAGTGGTGCTGTTTGCTGGTGCAGTCTGGGTGAGTCCGTaGCCTGCCCTATTTGCATTCACTTCTGCTGCTGTTGGCTTGTCG +
Preference number: 1 (lower is better)
Translates to: CSSVVLFAGAVWVSP*PALFAFTSAAVGLS
Trigger: CGACAAGCCAACAGCAGCAGAAGTGAATGCAAATAGGGCAGGCCACGGACTCACCCAGACTGCACCAGCAAACAGCACCACTGAGGAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CCA 90 bp GTTCGTAAGATGCTCTGGGCCTTCACGTTGCCCAGCTTGGCAGCCTaGATGAGATGGAGGGCACCCACAGCTTCGTCTTTTGGTACTGAC +
Preference number: 1 (lower is better)
Translates to: VRKMLWAFTLPSLAA*MRWRAPTASSFGTD
Trigger: GTCAGTACCAAAAGACGAAGCTGTGGGTGCCCTCCATCTCATCCAGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGAGCATCTTACGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 90 bp AGGGTGTCGGAGAGGGGTGTCCTGAGGTCCACGGAGTTCCATTCCTaGATCAGCTTGGTTGAATGCAGCACAACTCCTTCCTGGGGATTC +
Preference number: 1 (lower is better)
Translates to: RVSERGVLRSTEFHS*ISLVECSTTPSWGF
Trigger: GAATCCCCAGGAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATGGAACTCCGTGGACCTCAGGACACCCCTCTCCGACACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR TCA 90 bp CAAACTCCTCAAGTAAAGCATCTCTCAGCAGACACAGGGGTGCGGTaGCACATCTGTCCTGTCCCGGGGTGCGGTGACACATCTGTCCAA +
Preference number: 1 (lower is better)
Translates to: QTPQVKHLSADTGVR*HICPVPGCGDTSVQ
Trigger: TTGGACAGATGTGTCACCGCACCCCGGGACAGGACAGATGTGTCACCGCACCCCTGTGTCTGCTGAGAGATGCTTTACTTGAGGAGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR TCA 90 bp TCACGCGGCCACCTGTGGAGATGCCTACTCCCAGAATTCTGCAATTaGGTTTCACAGCTTCCGCGGCAGCTTCCACACACATCTGCAGGA +
Preference number: 1 (lower is better)
Translates to: SRGHLWRCLLPEFCN*VSQLPRQLPHTSAG
Trigger: TCCTGCAGATGTGTGTGGAAGCTGCCGCGGAAGCTGTGAAACTCAATTGCAGAATTCTGGGAGTAGGCATCTCCACAGGTGGCCGCGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR CCA 90 bp GGTGAGTCCGTGGCCTGCCCTATTTGCATTCACTTCTGCTGCTGTTaGCTTGTCGTTGAAGATGTGGTTTCTCAAGCTCCCTGCCCTGGC +
Preference number: 1 (lower is better)
Translates to: GESVACPICIHFCCC*LVVEDVVSQAPCPG
Trigger: GCCAGGGCAGGGAGCTTGAGAAACCACATCTTCAACGACAAGCCAACAGCAGCAGAAGTGAATGCAAATAGGGCAGGCCACGGACTCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 90 bp CTCAGTGGTGCTGTTTGCTGGTGCAGTCTGGGTGAGTCCGTGGCCTaGCCTATTTGCATTCACTTCTGCTGCTGTTGGCTTGTCGTTGAA +
Preference number: 1 (lower is better)
Translates to: LSGAVCWCSLGESVA*PICIHFCCCWLVVE
Trigger: TTCAACGACAAGCCAACAGCAGCAGAAGTGAATGCAAATAGGGCAGGCCACGGACTCACCCAGACTGCACCAGCAAACAGCACCACTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 90 bp TCCACCAAGAGCAGGTCCTCATCATGGAGTTTCTTTGCTTCCCTCTaGAAGGCCATTCCAGAGGCGTACGCTTCGATGCACCCATGGCTT +
Preference number: 1 (lower is better)
Translates to: STKSRSSSWSFFASL*KAIPEAYASMHPWL
Trigger: AAGCCATGGGTGCATCGAAGCGTACGCCTCTGGAATGGCCTTGCAGAGGGAAGCAAAGAAACTCCATGATGAGGACCTGCTCTTGGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR TCA 90 bp GGCCTGCCCTATTTGCATTCACTTCTGCTGCTGTTGGCTTGTCGTTaGAGATGTGGTTTCTCAAGCTCCCTGCCCTGGCTTCCTGTTCCT +
Preference number: 1 (lower is better)
Translates to: GLPYLHSLLLLLACR*RCGFSSSLPWLPVP
Trigger: AGGAACAGGAAGCCAGGGCAGGGAGCTTGAGAAACCACATCTTCAACGACAAGCCAACAGCAGCAGAAGTGAATGCAAATAGGGCAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR TCA 90 bp ATGAACTGGTCAAACGGGACGTGCTTGACTGCACGGAAATTGGGGTaGTGCTCGATGCCCTTCTTCCGCATCACTCGAACCATCTCCTTG +
Preference number: 1 (lower is better)
Translates to: MNWSNGTCLTARKLG*CSMPFFRITRTISL
Trigger: CAAGGAGATGGTTCGAGTGATGCGGAAGAAGGGCATCGAGCATCACCCCAATTTCCGTGCAGTCAAGCACGTCCCGTTTGACCAGTTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133709.8
3UTR GCA 90 bp TGCTGCTGTTGGCTTGTCGTTGAAGATGTGGTTTCTCAAGCTCCCTaGCCTGGCTTCCTGTTCCTGTGCCTTCCCTGCCTTTATGAATCC +
Preference number: 1 (lower is better)
Translates to: CCCWLVVEDVVSQAP*PGFLFLCLPCLYES
Trigger: GGATTCATAAAGGCAGGGAAGGCACAGGAACAGGAAGCCAGGGCAGGGAGCTTGAGAAACCACATCTTCAACGACAAGCCAACAGCAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 90 bp AGTCTGGGTGAGTCCGTGGCCTGCCCTATTTGCATTCACTTCTGCTaGTGTTGGCTTGTCGTTGAAGATGTGGTTTCTCAAGCTCCCTGC +
Preference number: 1 (lower is better)
Translates to: SLGESVACPICIHFC*CWLVVEDVVSQAPC
Trigger: GCAGGGAGCTTGAGAAACCACATCTTCAACGACAAGCCAACAGCAGCAGAAGTGAATGCAAATAGGGCAGGCCACGGACTCACCCAGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 90 bp TGCAGTCTGGGTGAGTCCGTGGCCTGCCCTATTTGCATTCACTTCTaGTGCTGTTGGCTTGTCGTTGAAGATGTGGTTTCTCAAGCTCCC +
Preference number: 1 (lower is better)
Translates to: CSLGESVACPICIHF*CCWLVVEDVVSQAP
Trigger: GGGAGCTTGAGAAACCACATCTTCAACGACAAGCCAACAGCAGCAGAAGTGAATGCAAATAGGGCAGGCCACGGACTCACCCAGACTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 90 bp GCTGTTTGCTGGTGCAGTCTGGGTGAGTCCGTGGCCTGCCCTATTTaGATTCACTTCTGCTGCTGTTGGCTTGTCGTTGAAGATGTGGTT +
Preference number: 1 (lower is better)
Translates to: AVCWCSLGESVACPI*IHFCCCWLVVEDVV
Trigger: AACCACATCTTCAACGACAAGCCAACAGCAGCAGAAGTGAATGCAAATAGGGCAGGCCACGGACTCACCCAGACTGCACCAGCAAACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CCA 90 bp CTGGCCAGGACTCCAGACAGGATCACCAGGGAAGGATTCATAGTGTaGAGGATGTTCACAACCCCAAGTCCCAAAGCAGTTCCAGCTGTT +
Preference number: 1 (lower is better)
Translates to: LARTPDRITREGFIV*RMFTTPSPKAVPAV
Trigger: AACAGCTGGAACTGCTTTGGGACTTGGGGTTGTGAACATCCTCCACACTATGAATCCTTCCCTGGTGATCCTGTCTGGAGTCCTGGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 90 bp TTCCATTCCTGGATCAGCTTGGTTGAATGCAGCACAACTCCTTCCTaGGGATTCACGCGGCCACCTGTGGAGATGCCTACTCCCAGAATT +
Preference number: 1 (lower is better)
Translates to: FHSWISLVECSTTPS*GFTRPPVEMPTPRI
Trigger: AATTCTGGGAGTAGGCATCTCCACAGGTGGCCGCGTGAATCCCCAGGAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR TCA 90 bp GTACACGTAAATGTGTATGCTGACATTCTGGGACACAGAGAGCAGTaGAAGGCTTTCTTTCCAGAAGCTCTGAGGCCGGCCTGCCTGCCT +
Preference number: 1 (lower is better)
Translates to: VHVNVYADILGHREQ*KAFFPEALRPACLP
Trigger: AGGCAGGCAGGCCGGCCTCAGAGCTTCTGGAAAGAAAGCCTTTCACTGCTCTCTGTGTCCCAGAATGTCAGCATACACATTTACGTGTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR TCA 90 bp AGCCTGGATGAGATGGAGGGCACCCACAGCTTCGTCTTTTGGTACTaGCATCCCTTCCACCAAGAGCAGGTCCTCATCATGGAGTTTCTT +
Preference number: 1 (lower is better)
Translates to: SLDEMEGTHSFVFWY*HPFHQEQVLIMEFL
Trigger: AAGAAACTCCATGATGAGGACCTGCTCTTGGTGGAAGGGATGTCAGTACCAAAAGACGAAGCTGTGGGTGCCCTCCATCTCATCCAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 90 bp CTATTTGCATTCACTTCTGCTGCTGTTGGCTTGTCGTTGAAGATGTaGTTTCTCAAGCTCCCTGCCCTGGCTTCCTGTTCCTGTGCCTTC +
Preference number: 1 (lower is better)
Translates to: LFAFTSAAVGLSLKM*FLKLPALASCSCAF
Trigger: GAAGGCACAGGAACAGGAAGCCAGGGCAGGGAGCTTGAGAAACCACATCTTCAACGACAAGCCAACAGCAGCAGAAGTGAATGCAAATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 90 bp AAGGATTATAGCATTAGGGAGGCTGAGAACCACTGGTTAAAGGGCTaGATAGAACCAGCCCAAGACCGGCAAGTATGTAGGCGACAGACA +
Preference number: 1 (lower is better)
Translates to: KDYSIREAENHWLKG*IEPAQDRQVCRRQT
Trigger: TGTCTGTCGCCTACATACTTGCCGGTCTTGGGCTGGTTCTATGCAGCCCTTTAACCAGTGGTTCTCAGCCTCCCTAATGCTATAATCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR TCA 90 bp CAGTACTCTGGAAGCGGGGGCAGGAGGATTGCTGTAAGTTTAAGATaGACCAAGCGAGATTACAGAGACAAGCGAGATTCTGTCTCGAAA +
Preference number: 1 (lower is better)
Translates to: QYSGSGGRRIAVSLR*TKRDYRDKRDSVSK
Trigger: TTTCGAGACAGAATCTCGCTTGTCTCTGTAATCTCGCTTGGTTCATCTTAAACTTACAGCAATCCTCCTGCCCCCGCTTCCAGAGTACTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR TCA 90 bp TGTAGTGCTTGCAATATTTTATCTTGGGTGTCAGCATCCCTGACATaGAGAACATTCTCCCCGGTTTCTCTTCCTATCTGCCTTGTGCCC +
Preference number: 1 (lower is better)
Translates to: CSACNILSWVSASLT*RTFSPVSLPICLVP
Trigger: GGGCACAAGGCAGATAGGAAGAGAAACCGGGGAGAATGTTCTTCATGTCAGGGATGCTGACACCCAAGATAAAATATTGCAAGCACTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR TCA 90 bp GGAGGTGTAGTGCTTGCAATATTTTATCTTGGGTGTCAGCATCCCTaGCATGAAGAACATTCTCCCCGGTTTCTCTTCCTATCTGCCTTG +
Preference number: 1 (lower is better)
Translates to: GGVVLAIFYLGCQHP*HEEHSPRFLFLSAL
Trigger: CAAGGCAGATAGGAAGAGAAACCGGGGAGAATGTTCTTCATGTCAGGGATGCTGACACCCAAGATAAAATATTGCAAGCACTACACCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR CCA 90 bp GGAACTATAGTAAAGGATTATAGCATTAGGGAGGCTGAGAACCACTaGTTAAAGGGCTGCATAGAACCAGCCCAAGACCGGCAAGTATGT +
Preference number: 1 (lower is better)
Translates to: GTIVKDYSIREAENH*LKGCIEPAQDRQVC
Trigger: ACATACTTGCCGGTCTTGGGCTGGTTCTATGCAGCCCTTTAACCAGTGGTTCTCAGCCTCCCTAATGCTATAATCCTTTACTATAGTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 90 bp GTGACAGCTTCTGTAAAGTACAAGGAAGAAGGAAGCAATTGCTATTaGCTGGTGGCCCTTGCTTTCCATTCACGGTTATTAAAGCCTGCT +
Preference number: 1 (lower is better)
Translates to: VTASVKYKEEGSNCY*LVALAFHSRLLKPA
Trigger: AGCAGGCTTTAATAACCGTGAATGGAAAGCAAGGGCCACCAGGCAATAGCAATTGCTTCCTTCTTCCTTGTACTTTACAGAAGCTGTCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CCA 90 bp TTCCCATCCCCATATATCTTTGAGCAAGGGTACTGTTTGCCGAACTaGAGGTGTAGTGCTTGCAATATTTTATCTTGGGTGTCAGCATCC +
Preference number: 1 (lower is better)
Translates to: FPSPYIFEQGYCLPN*RCSACNILSWVSAS
Trigger: GGATGCTGACACCCAAGATAAAATATTGCAAGCACTACACCTCCAGTTCGGCAAACAGTACCCTTGCTCAAAGATATATGGGGATGGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR-3UTR CCA 90 bp GGACCGTCCAGGGACACCACGAGATGGCCGAGCTCCGCCGCGCAGAAGGAGCTGAGGCATTGGGTCCCCTaGAGCTTGGCTTCCAGGCAG +
Preference number: 2 (lower is better)
Translates to: GPSRDTTRWPSSAAQKELRHWVP*SLASRQ
Trigger: CTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCT...CAGCTCCTTCTGCGCGGCGGAGCTCGGCCATCTCGTGGTGTCCCTGGACGGTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR TCA 90 bp AGCTGCCCCCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCCAGGCTCTTAACCACTaGGCTGTCTCAGCAGCCCTC +
Preference number: 2 (lower is better)
Translates to: SCPRQRGIGSPGAWLPGSQALNH*AVSAAL
Trigger: GAGGGCTGCTGAGACAGCTCAGTGGTTAAGAGCCTG...GCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGGGGGCAGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CCA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGCTGAGCTGCCTGACATaGGTGCTGGGGACTGGCAGG +
Preference number: 2 (lower is better)
Translates to: AERHWVPWSLASRQLSCLLSCLT*VLGTGR
Trigger: CCTGCCAGTCCCCAGCACCCATGTCAGGCAGCTCAG...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CAA 90 bp CCTTGGCCGAACTTCCTCTCTGCCATGGCGGCACAGTTGCCGTCATaGTCCACCCACACGGGGAGATGCAGGGTGTCGGAGAGGGGTGTC +
Preference number: 2 (lower is better)
Translates to: PWPNFLSAMAAQLPS*STHTGRCRVSERGV
Trigger: GACACCCCTCTCCGACACCCTGCATCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGTTCGGCCAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CAA 90 bp TCTCTGTCCGTGTCCGTTCCCGGGAGACCTAGTGGATCCTGCGCGTaGTGTAGTCCAGAACCATGCTGGCTGCGCCAAGCAGGGCCGGGT +
Preference number: 2 (lower is better)
Translates to: SLSVSVPGRPSGSCA*CSPEPCWLRQAGPG
Trigger: ACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCCGGGAACGGACACGGACAGAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR TCA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGCAGGCTCTTAACCACTaGGCTGTCTCAGCAGCCCTC +
Preference number: 2 (lower is better)
Translates to: AERHWVPWSLASRQLSCLQALNH*AVSAAL
Trigger: GAGGGCTGCTGAGACAGCTCAGTGGTTAAGAGCCTG...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR TCA 90 bp CAGGACCGTCCAGGGACACCACGAGATGGCCGAGCTCCGCCGCGCAGAAGGAGCCTGGATCAGCTTGGTTaGATGCAGCACAACTCCTTC +
Preference number: 2 (lower is better)
Translates to: QDRPGTPRDGRAPPRRRSLDQLG*MQHNSF
Trigger: GAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAG...GCTCCTTCTGCGCGGCGGAGCTCGGCCATCTCGTGGTGTCCCTGGACGGTCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR TCA 90 bp TTCCTCTCTGCCATGGCGGCACAGTTGCCGTCATTGTCCACCCACACGGGGAGACGGAGAGGGGTGTCCTaGGGTCCACGGAGTTCCATT +
Preference number: 2 (lower is better)
Translates to: FLSAMAAQLPSLSTHTGRRRGVS*GPRSSI
Trigger: AATGGAACTCCGTGGACCTCAGGACACCCCTCTCCG...TCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CAA 90 bp TGTCCTTTTCCTTGGCCGAACTTCCTCTCTGCCATGGCGGCACAGTaGCCGTCATTGTCCACCCACACGGGGAGATGCAGGGTGTCGGAG +
Preference number: 2 (lower is better)
Translates to: CPFPWPNFLSAMAAQ*PSLSTHTGRCRVSE
Trigger: CTCCGACACCCTGCATCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGTTCGGCCAAGGAAAAGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR TCA 90 bp CATGCAGCCAGCGTGGGCGACCAGCTGTATGAACTGGTCAAACGGGACGTGCTTCGGAGAGGGGTGTCCTaGGGTCCACGGAGTTCCATT +
Preference number: 2 (lower is better)
Translates to: HAASVGDQLYELVKRDVLRRGVS*GPRSSI
Trigger: AATGGAACTCCGTGGACCTCAGGACACCCCTCTCCG...AAGCACGTCCCGTTTGACCAGTTCATACAGCTGGTCGCCCACGCTGGCTGCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR-3UTR GCA 90 bp GCCCAGCTTGGCAGCCTGGATGAGATGGAGGGCACCCACAGCTTCGTCTTTTGGAGGCGTACGCTTCGATaGACCCATGGCTTCCACAGG +
Preference number: 2 (lower is better)
Translates to: AQLGSLDEMEGTHSFVFWRRTLR*THGFHR
Trigger: CCTGTGGAAGCCATGGGTGCATCGAAGCGTACGCCT...CCAAAAGACGAAGCTGTGGGTGCCCTCCATCTCATCCAGGCTGCCAAGCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR GCA 90 bp CCCGGGAGACCTAGTGGATCCTGCGCGTTGTGTAGTCCAGAACCATGCTGGCTGTGTAGTCCAGAACCATaGTGGCTGCGCCAAGCAGGG +
Preference number: 2 (lower is better)
Translates to: PGRPSGSCALCSPEPCWLCSPEP*WLRQAG
Trigger: CCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTACA...CAGCCAGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCCGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CCA 90 bp CTGGCGGATGACGTCCTTCACGATGTGGATGTAGTGACTGGCCAGGACTCCAGACTGAGCTGCCTGACATaGGTGCTGGGGACTGGCAGG +
Preference number: 2 (lower is better)
Translates to: LADDVLHDVDVVTGQDSRLSCLT*VLGTGR
Trigger: CCTGCCAGTCCCCAGCACCCATGTCAGGCAGCTCAG...TCTGGAGTCCTGGCCAGTCACTACATCCACATCGTGAAGGACGTCATCCGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CCA 90 bp AATCATGCAGCCAGCGTGGGCGACCAGCTGTATGAACTGGTCAAACGGGACGTGCTGAGCTGCCTGACATaGGTGCTGGGGACTGGCAGG +
Preference number: 2 (lower is better)
Translates to: NHAASVGDQLYELVKRDVLSCLT*VLGTGR
Trigger: CCTGCCAGTCCCCAGCACCCATGTCAGGCAGCTCAG...CACGTCCCGTTTGACCAGTTCATACAGCTGGTCGCCCACGCTGGCTGCATGATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR CAA 90 bp CCCAAAGCAGTTCCAGCTGTTCGTAAGATGCTCTGGGCCTTCACGTaGCCCAGCTTGGCAGCCTGGATGAGATGGAGGGCACCCACAGCT +
Preference number: 2 (lower is better)
Translates to: PKAVPAVRKMLWAFT*PSLAAWMRWRAPTA
Trigger: AGCTGTGGGTGCCCTCCATCTCATCCAGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGAGCATCTTACGAACAGCTGGAACTGCTTTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CAA 90 bp AGAACATTCTCCCCGGTTTCTCTTCCTATCTGCCTTGTGCCCAGGTaGATCACGGGTGTTCCGAAAGCGCCAACCTCTCGCACGCCGCAG +
Preference number: 2 (lower is better)
Translates to: RTFSPVSLPICLVPR*ITGVPKAPTSRTPQ
Trigger: CTGCGGCGTGCGAGAGGTTGGCGCTTTCGGAACACCCGTGATCAACCTGGGCACAAGGCAGATAGGAAGAGAAACCGGGGAGAATGTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133709.8
ENSMUST00000174522.8
3UTR CAA 90 bp CCCTGTCCCCGTGATGAGCGTCACGAAGTTCTCCTGTCCTTTTCCTaGGCCGAACTTCCTCTCTGCCATGGCGGCACAGTTGCCGTCATT +
Preference number: 2 (lower is better)
Translates to: PCPRDERHEVLLSFS*AELPLCHGGTVAVI
Trigger: AATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGTTCGGCCAAGGAAAAGGACAGGAGAACTTCGTGACGCTCATCACGGGGACAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CAA 90 bp GAGAGGGGTGTCCTGAGGTCCACGGAGTTCCATTCCTGGATCAGCTaGGTTGAATGCAGCACAACTCCTTCCTGGGGATTCACGCGGCCA +
Preference number: 2 (lower is better)
Translates to: ERGVLRSTEFHSWIS*VECSTTPSWGFTRP
Trigger: TGGCCGCGTGAATCCCCAGGAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATGGAACTCCGTGGACCTCAGGACACCCCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR-3UTR TCA 90 bp GCTCCTTTTGGTGCAGGAAGTGTCCCTGGAACCCACAGCAGGGTTTGCAGTGAGTCCAGCCCTAGGCACTaGACAGGACTCTTGGGCTGT +
Preference number: 2 (lower is better)
Translates to: APFGAGSVPGTHSRVCSESSPRH*TGLLGC
Trigger: ACAGCCCAAGAGTCCTGTTCAGTGCCTAGGGCTGGA...CTCACTGCAAACCCTGCTGTGGGTTCCAGGGACACTTCCTGCACCAAAAGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CAA 90 bp GTTCCAGCTGTTCGTAAGATGCTCTGGGCCTTCACGTTGCCCAGCTaGGCAGCCTGGATGAGATGGAGGGCACCCACAGCTTCGTCTTTT +
Preference number: 2 (lower is better)
Translates to: VPAVRKMLWAFTLPS*AAWMRWRAPTASSF
Trigger: AAAAGACGAAGCTGTGGGTGCCCTCCATCTCATCCAGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGAGCATCTTACGAACAGCTGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR TCA 90 bp TTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGACAGGCTCTTAACCACTaGGCTGTCTCAGCAGCCCTC +
Preference number: 2 (lower is better)
Translates to: LYVCGEGYVHLSAAAPGRQALNH*AVSAAL
Trigger: GAGGGCTGCTGAGACAGCTCAGTGGTTAAGAGCCTG...TCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CCA 90 bp ATTCTCCCCGGTTTCTCTTCCTATCTGCCTTGTGCCCAGGTTGATCACGGGTGTAGGCATTGGGTCCCCTaGAGCTTGGCTTCCAGGCAG +
Preference number: 2 (lower is better)
Translates to: ILPGFSSYLPCAQVDHGCRHWVP*SLASRQ
Trigger: CTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCT...ACACCCGTGATCAACCTGGGCACAAGGCAGATAGGAAGAGAAACCGGGGAGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR CAA 90 bp TTCACGCGGCCACCTGTGGAGATGCCTACTCCCAGAATTCTGCAATaGAGTTTCACAGCTTCCGCGGCAGCTTCCACACACATCTGCAGG +
Preference number: 2 (lower is better)
Translates to: FTRPPVEMPTPRILQ*SFTASAAASTHICR
Trigger: CCTGCAGATGTGTGTGGAAGCTGCCGCGGAAGCTGTGAAACTCAATTGCAGAATTCTGGGAGTAGGCATCTCCACAGGTGGCCGCGTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR CAA 90 bp AGTCCGTGGCCTGCCCTATTTGCATTCACTTCTGCTGCTGTTGGCTaGTCGTTGAAGATGTGGTTTCTCAAGCTCCCTGCCCTGGCTTCC +
Preference number: 2 (lower is better)
Translates to: SPWPALFAFTSAAVG*SLKMWFLKLPALAS
Trigger: GGAAGCCAGGGCAGGGAGCTTGAGAAACCACATCTTCAACGACAAGCCAACAGCAGCAGAAGTGAATGCAAATAGGGCAGGCCACGGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CAA 90 bp AAGCCCTTTGACACTCATGGCCCCGATAGGTATGAAGCTGCAGGGTaGGAGTTTGTCCTGCTGAGTTCTCCCTGCCTCTTTCCCACTGTG +
Preference number: 2 (lower is better)
Translates to: KPFDTHGPDRYEAAG*EFVLLSSPCLFPTV
Trigger: CACAGTGGGAAAGAGGCAGGGAGAACTCAGCAGGACAAACTCCAACCCTGCAGCTTCATACCTATCGGGGCCATGAGTGTCAAAGGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR TCA 90 bp CTGGCGGATGACGTCCTTCACGATGTGGATGTAGTGACTGGCCAGGACTCCAGACTGGATCAGCTTGGTTaGATGCAGCACAACTCCTTC +
Preference number: 2 (lower is better)
Translates to: LADDVLHDVDVVTGQDSRLDQLG*MQHNSF
Trigger: GAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAG...TCTGGAGTCCTGGCCAGTCACTACATCCACATCGTGAAGGACGTCATCCGCCAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR GCA 90 bp GTCAGCATCCCTGACATGAAGAACATTCTCCCCGGTTTCTCTTCCTATCTGCCTCCGCGCAGAAGGAGCTaGCGTGGATCAGTTCGTGCT +
Preference number: 2 (lower is better)
Translates to: VSIPDMKNILPGFSSYLPPRRRS*RGSVRA
Trigger: AGCACGAACTGATCCACGGCAGCTCCTTCTGCGCGG...AGGCAGATAGGAAGAGAAACCGGGGAGAATGTTCTTCATGTCAGGGATGCTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR-3UTR GCA 90 bp CAGGATCACCAGGGAAGGATTCATAGTGTGGAGGATGTTCACAACCCCAAGTCCAGGCGTACGCTTCGATaGACCCATGGCTTCCACAGG +
Preference number: 2 (lower is better)
Translates to: QDHQGRIHSVEDVHNPKSRRTLR*THGFHR
Trigger: CCTGTGGAAGCCATGGGTGCATCGAAGCGTACGCCT...GGACTTGGGGTTGTGAACATCCTCCACACTATGAATCCTTCCCTGGTGATCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR GCA 90 bp CCCGGGAGACCTAGTGGATCCTGCGCGTTGTGTAGTCCAGAACCATGCTGGCTGATCATGGAGTTTCTTTaGTTCCCTCTGCAAGGCCAT +
Preference number: 2 (lower is better)
Translates to: PGRPSGSCALCSPEPCWLIMEFL*FPLQGH
Trigger: ATGGCCTTGCAGAGGGAAGCAAAGAAACTCCATGAT...CAGCCAGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCCGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CCA 90 bp AAGACAGCCACTGTTGGACTAGCTGAACCACAGCCTGTGAGCCATTCTGATAATCCGGCAGAGAGGCATTaGGTCCCCTGGAGCTTGGCT +
Preference number: 2 (lower is better)
Translates to: KTATVGLAEPQPVSHSDNPAERH*VPWSLA
Trigger: AGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGG...ATTATCAGAATGGCTCACAGGCTGTGGTTCAGCTAGTCCAACAGTGGCTGTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR CCA 90 bp TCTCTGCCATGGCGGCACAGTTGCCGTCATTGTCCACCCACACGGGGAGATGCAATTCCTGGATCAGCTTaGTTGAATGCAGCACAACTC +
Preference number: 2 (lower is better)
Translates to: SLPWRHSCRHCPPTRGDAIPGSA*LNAAQL
Trigger: GAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAAT...TGCATCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGCCGCCATGGCAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CCA 90 bp GGAGACCTAGTGGATCCTGCGCGTTGTGTAGTCCAGAACCATGCTGGCTGCGCCGAAGGATTCATAGTGTaGAGGATGTTCACAACCCCA +
Preference number: 2 (lower is better)
Translates to: GDLVDPARCVVQNHAGCAEGFIV*RMFTTP
Trigger: TGGGGTTGTGAACATCCTCCACACTATGAATCCTTC...GGCGCAGCCAGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CAA 90 bp TGGCCTGCCCTATTTGCATTCACTTCTGCTGCTGTTGGCTTGTCGTaGAAGATGTGGTTTCTCAAGCTCCCTGCCCTGGCTTCCTGTTCC +
Preference number: 2 (lower is better)
Translates to: WPALFAFTSAAVGLS*KMWFLKLPALASCS
Trigger: GGAACAGGAAGCCAGGGCAGGGAGCTTGAGAAACCACATCTTCAACGACAAGCCAACAGCAGCAGAAGTGAATGCAAATAGGGCAGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR GCA 90 bp TCACAGCAGCAGAAGGTAACTGATACACTGGCACGTGTGGGTGCTTACTCCAGGTCTTGGGCTGTCCCTTaGAAGACAGCCACTGTTGGA +
Preference number: 2 (lower is better)
Translates to: SQQQKVTDTLARVGAYSRSWAVP*KTATVG
Trigger: TCCAACAGTGGCTGTCTTGCAAGGGACAGCCCAAGA...CCTGGAGTAAGCACCCACACGTGCCAGTGTATCAGTTACCTTCTGCTGCTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR GCA 90 bp GTGTTCCGAAAGCGCCAACCTCTCGCACGCCGCAGCTGCTATTCCCAATCATGCGAACCATCTCCTTGCTaGCTGCATCGATATTTGGAA +
Preference number: 2 (lower is better)
Translates to: VFRKRQPLARRSCYSQSCEPSPC*LHRYLE
Trigger: TTCCAAATATCGATGCAGGCAGCAAGGAGATGGTTC...GCATGATTGGGAATAGCAGCTGCGGCGTGCGAGAGGTTGGCGCTTTCGGAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133709.8
3UTR-3UTR GCA 90 bp CCTGACATGAAGAACATTCTCCCCGGTTTCTCTTCCTATCTGCCTTGTGCCCAGTGGGGTGATGCTCGATaGCCTTCTTCCGCATCACTC +
Preference number: 2 (lower is better)
Translates to: PDMKNILPGFSSYLPCAQWGDAR*PSSASL
Trigger: GAGTGATGCGGAAGAAGGGCATCGAGCATCACCCCA...CTGGGCACAAGGCAGATAGGAAGAGAAACCGGGGAGAATGTTCTTCATGTCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133709.8
3UTR-3UTR CCA 90 bp TATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGAGAGGCAATTGCTATTGCCTaGTGGCCCTTGCTTTCCATT +
Preference number: 2 (lower is better)
Translates to: YVCGEGYVHLSAAAPGREAIAIA*WPLLSI
Trigger: AATGGAAAGCAAGGGCCACCAGGCAATAGCAATTGC...CTCTCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR CCA 90 bp CTGGCGGATGACGTCCTTCACGATGTGGATGTAGTGACTGGCCAGGACTCCAGAAGCAGGTCCTCATCATaGAGTTTCTTTGCTTCCCTC +
Preference number: 2 (lower is better)
Translates to: LADDVLHDVDVVTGQDSRSRSSS*SFFASL
Trigger: GAGGGAAGCAAAGAAACTCCATGATGAGGACCTGCT...TCTGGAGTCCTGGCCAGTCACTACATCCACATCGTGAAGGACGTCATCCGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CCA 90 bp AGGATGTTCACAACCCCAAGTCCCAAAGCAGTTCCAGCTGTTCGTAAGATGCTCGAGGACAAGGCTTGCTaGCGGATGACGTCCTTCACG +
Preference number: 2 (lower is better)
Translates to: RMFTTPSPKAVPAVRKMLEDKAC*RMTSFT
Trigger: CGTGAAGGACGTCATCCGCCAGCAAGCCTTGTCCTC...GAGCATCTTACGAACAGCTGGAACTGCTTTGGGACTTGGGGTTGTGAACATCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CCA 90 bp CAGGATCACCAGGGAAGGATTCATAGTGTGGAGGATGTTCACAACCCCAAGTCCTGTGGATGTAGTGACTaGCCAGGACTCCAGACAGGA +
Preference number: 2 (lower is better)
Translates to: QDHQGRIHSVEDVHNPKSCGCSD*PGLQTG
Trigger: TCCTGTCTGGAGTCCTGGCCAGTCACTACATCCACA...GGACTTGGGGTTGTGAACATCCTCCACACTATGAATCCTTCCCTGGTGATCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CAA 90 bp TGGCGGTACGTCCATGAGTTTATGGGAGTCAGGAGTGGATGCAGTTaGAATGGGAATGTCTCTGTAGGCTCAGGTATGTCGGTACGTGCT +
Preference number: 2 (lower is better)
Translates to: WRYVHEFMGVRSGCS*NGNVSVGSGMSVRA
Trigger: AGCACGTACCGACATACCTGAGCCTACAGAGACATTCCCATTCAAACTGCATCCACTCCTGACTCCCATAAACTCATGGACGTACCGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR TCA 90 bp CCCACAGCTTCGTCTTTTGGTACTGACATCCCTTCCACCAAGAGCAGGTCCTCATTCGTCTTTTGGTACTaGCATCCCTTCCACCAAGAG +
Preference number: 2 (lower is better)
Translates to: PTASSFGTDIPSTKSRSSFVFWY*HPFHQE
Trigger: CTCTTGGTGGAAGGGATGTCAGTACCAAAAGACGAA...TGAGGACCTGCTCTTGGTGGAAGGGATGTCAGTACCAAAAGACGAAGCTGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR GCA 90 bp CTTCCTGGGGATTCACGCGGCCACCTGTGGAGATGCCTACTCCCAGAATTCTGCTGGAGGTGTAGTGCTTaGAATATTTTATCTTGGGTG +
Preference number: 2 (lower is better)
Translates to: LPGDSRGHLWRCLLPEFCWRCSA*NILSWV
Trigger: CACCCAAGATAAAATATTGCAAGCACTACACCTCCA...GCAGAATTCTGGGAGTAGGCATCTCCACAGGTGGCCGCGTGAATCCCCAGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR-3UTR CCA 90 bp ACGGAGTTCCATTCCTGGATCAGCTTGGTTGAATGCAGCACAACTCCTTCCTGGAGCAGGTCCTCATCATaGAGTTTCTTTGCTTCCCTC +
Preference number: 2 (lower is better)
Translates to: TEFHSWISLVECSTTPSWSRSSS*SFFASL
Trigger: GAGGGAAGCAAAGAAACTCCATGATGAGGACCTGCT...CCAGGAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATGGAACTCCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR TCA 90 bp TCACAGCAGCAGAAGGTAACTGATACACTGGCACGTGTGGGTGCTTACTCCAGGTTGATCCACATCTTTTaGGGTGGGAAAATCCACCTT +
Preference number: 2 (lower is better)
Translates to: SQQQKVTDTLARVGAYSRLIHIF*GGKIHL
Trigger: AAGGTGGATTTTCCCACCTCAAAAGATGTGGATCAA...CCTGGAGTAAGCACCCACACGTGCCAGTGTATCAGTTACCTTCTGCTGCTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR GCA 90 bp TCCTATCTGCCTTGTGCCCAGGTTGATCACGGGTGTTCCGAAAGCGCCAACCTCAACATCTTTATGGAATaGTTAATGTCAGTGGTCACG +
Preference number: 2 (lower is better)
Translates to: SYLPCAQVDHGCSESANLNIFME*LMSVVT
Trigger: CGTGACCACTGACATTAAGCATTCCATAAAGATGTT...GAGGTTGGCGCTTTCGGAACACCCGTGATCAACCTGGGCACAAGGCAGATAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133709.8
3UTR-3UTR CCA 90 bp ACCAAGAGCAGGTCCTCATCATGGAGTTTCTTTGCTTCCCTCTGCAAGGCCATTACGGAGTTCCATTCCTaGATCAGCTTGGTTGAATGC +
Preference number: 2 (lower is better)
Translates to: TKSRSSSWSFFASLCKAITEFHS*ISLVEC
Trigger: GCATTCAACCAAGCTGATCCAGGAATGGAACTCCGT...AATGGCCTTGCAGAGGGAAGCAAAGAAACTCCATGATGAGGACCTGCTCTTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR GCA 90 bp AGGATGTTCACAACCCCAAGTCCCAAAGCAGTTCCAGCTGTTCGTAAGATGCTCATCATGGAGTTTCTTTaGTTCCCTCTGCAAGGCCAT +
Preference number: 2 (lower is better)
Translates to: RMFTTPSPKAVPAVRKMLIMEFL*FPLQGH
Trigger: ATGGCCTTGCAGAGGGAAGCAAAGAAACTCCATGAT...GAGCATCTTACGAACAGCTGGAACTGCTTTGGGACTTGGGGTTGTGAACATCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CCA 90 bp TCACAGCAGCAGAAGGTAACTGATACACTGGCACGTGTGGGTGCTTACTCCAGGGAGGCTGGGTACACCTaGGAGAGATTTTTAATTAAA +
Preference number: 2 (lower is better)
Translates to: SQQQKVTDTLARVGAYSREAGYT*ERFLIK
Trigger: TTTAATTAAAAATCTCTCCCAGGTGTACCCAGCCTC...CCTGGAGTAAGCACCCACACGTGCCAGTGTATCAGTTACCTTCTGCTGCTGTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR CCA 90 bp AGGATGTTCACAACCCCAAGTCCCAAAGCAGTTCCAGCTGTTCGTAAGATGCTCATTCCTGGATCAGCTTaGTTGAATGCAGCACAACTC +
Preference number: 2 (lower is better)
Translates to: RMFTTPSPKAVPAVRKMLIPGSA*LNAAQL
Trigger: GAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAAT...GAGCATCTTACGAACAGCTGGAACTGCTTTGGGACTTGGGGTTGTGAACATCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CCA 90 bp GTCAGCATCCCTGACATGAAGAACATTCTCCCCGGTTTCTCTTCCTATCTGCCTTACTGTTTGCCGAACTaGAGGTGTAGTGCTTGCAAT +
Preference number: 2 (lower is better)
Translates to: VSIPDMKNILPGFSSYLPYCLPN*RCSACN
Trigger: ATTGCAAGCACTACACCTCCAGTTCGGCAAACAGTA...AGGCAGATAGGAAGAGAAACCGGGGAGAATGTTCTTCATGTCAGGGATGCTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR-3UTR TCA 90 bp AAATTAGATAATGATAAAGCAGGGCCACAAATACAGAGCTCTTTTGGGAAAAGAGACACAGGGGTGCGGTaGCACATCTGTCCTGTCCCG +
Preference number: 2 (lower is better)
Translates to: KLDNDKAGPQIQSSFGKRDTGVR*HICPVP
Trigger: CGGGACAGGACAGATGTGTCACCGCACCCCTGTGTC...TCTTTTCCCAAAAGAGCTCTGTATTTGTGGCCCTGCTTTATCATTATCTAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CAA 90 bp CCTTTCGGTGACAGCTTCTGTAAAGTACAAGGAAGAAGGAAGCAATaGCTATTGCCTGGTGGCCCTTGCTTTCCATTCACGGTTATTAAA +
Preference number: 2 (lower is better)
Translates to: PFGDSFCKVQGRRKQ*LLPGGPCFPFTVIK
Trigger: TTTAATAACCGTGAATGGAAAGCAAGGGCCACCAGGCAATAGCAATTGCTTCCTTCTTCCTTGTACTTTACAGAAGCTGTCACCGAAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CAA 90 bp TCCTTGCTGCCTGCATCGATATTTGGAAACAGAACTAGGGTCCTCTaGTTAAACGAGATCAGGGCATCCAGTGTTAGCTCAAACATCTTT +
Preference number: 2 (lower is better)
Translates to: SLLPASIFGNRTRVL*LNEIRASSVSSNIF
Trigger: AAAGATGTTTGAGCTAACACTGGATGCCCTGATCTCGTTTAACAAGAGGACCCTAGTTCTGTTTCCAAATATCGATGCAGGCAGCAAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133709.8
3UTR-3UTR GCA 90 bp AAATTAGATAATGATAAAGCAGGGCCACAAATACAGAGCTCTTTTGGGAAAAGACAGCAGACACAGGGGTaGGGTGACACATCTGTCCTG +
Preference number: 2 (lower is better)
Translates to: KLDNDKAGPQIQSSFGKRQQTQG*GDTSVL
Trigger: CAGGACAGATGTGTCACCGCACCCCTGTGTCTGCTG...TCTTTTCCCAAAAGAGCTCTGTATTTGTGGCCCTGCTTTATCATTATCTAATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CAA 90 bp ACCCTATCAGAGCAGCCTTGGCGAAAGCTCATGGGGAAAGTGGATTaGAAAGGTGTGATACTATTCTTGGTTGTCAACTTGATTACATCT +
Preference number: 2 (lower is better)
Translates to: TLSEQPWRKLMGKVD*KGVILFLVVNLITS
Trigger: AGATGTAATCAAGTTGACAACCAAGAATAGTATCACACCTTTCAAATCCACTTTCCCCATGAGCTTTCGCCAAGGCTGCTCTGATAGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR GCA 90 bp GGGGAAAGTGGATTTGAAAGGTGTGATACTATTCTTGGTTGTCAACTTGATTACTTGCCTGGTGGCCCTTaGTTTCCATTCACGGTTATT +
Preference number: 2 (lower is better)
Translates to: GESGFERCDTILGCQLDYLPGGP*FPFTVI
Trigger: AATAACCGTGAATGGAAAGCAAGGGCCACCAGGCAA...GTAATCAAGTTGACAACCAAGAATAGTATCACACCTTTCAAATCCACTTTCCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR CCA 90 bp AAGTACAAGGAAGAAGGAAGCAATTGCTATTGCCTGGTGGCCCTTGCTTTCCATAGATTCTGGTATTTCTaGGACCAGATATCAAGTTTG +
Preference number: 2 (lower is better)
Translates to: KYKEEGSNCYCLVALAFHRFWYF*DQISSL
Trigger: CAAACTTGATATCTGGTCCCAGAAATACCAGAATCT...ATGGAAAGCAAGGGCCACCAGGCAATAGCAATTGCTTCCTTCTTCCTTGTACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR GCA 90 bp AAATTAGATAATGATAAAGCAGGGCCACAAATACAGAGCTCTTTTGGGAAAAGATGCATTCACTTCTGCTaGTGTTGGCTTGTCGTTGAA +
Preference number: 2 (lower is better)
Translates to: KLDNDKAGPQIQSSFGKRCIHFC*CWLVVE
Trigger: TTCAACGACAAGCCAACAGCAGCAGAAGTGAATGCA...TCTTTTCCCAAAAGAGCTCTGTATTTGTGGCCCTGCTTTATCATTATCTAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 72 bp GCACAGTTGCCGTCATTGTCCACCCACACGGGGAGATaGAGGGTGTCGGAGAGGGGTGTCCTGAGGTCCACG +
Preference number: 3 (lower is better)
Translates to: AQLPSLSTHTGR*RVSERGVLRST
Trigger: CGTGGACCTCAGGACACCCCTCTCCGACACCCTGCATCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CAA 90 bp TTCCCTCTGCAAGGCCATTCCAGAGGCGTACGCTTCGATGCACCCATGGCTTCCTGGGTCCCCTGGAGCTaGGCTTCCAGGCAGCTGAGC +
Preference number: 3 (lower is better)
Translates to: FPLQGHSRGVRFDAPMASWVPWS*ASRQLS
Trigger: GCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCA...GGAAGCCATGGGTGCATCGAAGCGTACGCCTCTGGAATGGCCTTGCAGAGGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR GCA 72 bp GTGTTCCGAAAGCGCCAACCTCTCGCACGCCGCAGCTaGTATTCCCAATCATGCAGCCAGCGTGGGCGACCA +
Preference number: 3 (lower is better)
Translates to: VFRKRQPLARRS*YSQSCSQRGRP
Trigger: TGGTCGCCCACGCTGGCTGCATGATTGGGAATAGCAGCTGCGGCGTGCGAGAGGTTGGCGCTTTCGGAACAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000133709.8
ENSMUST00000174522.8
3UTR GCA 72 bp GGGTCCACCAAGTCTGAGACCACCACGTCCACATCCTaGACGGAGGACAAGGCTTGCTGGCGGATGACGTCC +
Preference number: 3 (lower is better)
Translates to: GSTKSETTTSTS*TEDKACWRMTS
Trigger: GGACGTCATCCGCCAGCAAGCCTTGTCCTCCGTGCAGGATGTGGACGTGGTGGTCTCAGACTTGGTGGACCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR GCA 72 bp CCTAGTGGATCCTGCGCGTTGTGTAGTCCAGAACCATaGTGGCTGCGCCAAGCAGGGCCGGGTCCACCAAGT +
Preference number: 3 (lower is better)
Translates to: PSGSCALCSPEP*WLRQAGPGPPS
Trigger: ACTTGGTGGACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR GCA 72 bp CTGTCCGTGTCCGTTCCCGGGAGACCTAGTGGATCCTaGGCGTTGTGTAGTCCAGAACCATGCTGGCTGCGC +
Preference number: 3 (lower is better)
Translates to: LSVSVPGRPSGS*ALCSPEPCWLR
Trigger: GCGCAGCCAGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCCGGGAACGGACACGGACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 72 bp AGTGGATCCTGCGCGTTGTGTAGTCCAGAACCATGCTaGCTGCGCCAAGCAGGGCCGGGTCCACCAAGTCTG +
Preference number: 3 (lower is better)
Translates to: SGSCALCSPEPC*LRQAGPGPPSL
Trigger: CAGACTTGGTGGACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTACACAACGCGCAGGATCCACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CAA 90 bp TATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGAGAGTGGGTCCCCTGGAGCTaGGCTTCCAGGCAGCTGAGC +
Preference number: 3 (lower is better)
Translates to: YVCGEGYVHLSAAAPGREWVPWS*ASRQLS
Trigger: GCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCA...CTCTCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CAA 90 bp GCCCAGCTTGGCAGCCTGGATGAGATGGAGGGCACCCACAGCTTCGTCTTTTGGGCACAGTTGCCGTCATaGTCCACCCACACGGGGAGA +
Preference number: 3 (lower is better)
Translates to: AQLGSLDEMEGTHSFVFWAQLPS*STHTGR
Trigger: TCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGC...CCAAAAGACGAAGCTGTGGGTGCCCTCCATCTCATCCAGGCTGCCAAGCTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CAA 90 bp AGAACCATGCTGGCTGCGCCAAGCAGGGCCGGGTCCACCAAGTCTGAGACCACCTTGCCACCCTCAGGTTaGTCCCGCCAAGATCAACAG +
Preference number: 3 (lower is better)
Translates to: RTMLAAPSRAGSTKSETTLPPSG*SRQDQQ
Trigger: CTGTTGATCTTGGCGGGACAAACCTGAGGGTGGCAA...GGTGGTCTCAGACTTGGTGGACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR TCA 72 bp ACACGGGGAGATGCAGGGTGTCGGAGAGGGGTGTCCTaGGGTCCACGGAGTTCCATTCCTGGATCAGCTTGG +
Preference number: 3 (lower is better)
Translates to: TRGDAGCRRGVS*GPRSSIPGSAW
Trigger: CCAAGCTGATCCAGGAATGGAACTCCGTGGACCTCAGGACACCCCTCTCCGACACCCTGCATCTCCCCGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR GCA 72 bp CAGGTATGTCGGTACGTGCTCCTCAGTGGTGCTGTTTaGTGGTGCAGTCTGGGTGAGTCCGTGGCCTGCCCT +
Preference number: 3 (lower is better)
Translates to: QVCRYVLLSGAV*WCSLGESVACP
Trigger: AGGGCAGGCCACGGACTCACCCAGACTGCACCAGCAAACAGCACCACTGAGGAGCACGTACCGACATACCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 72 bp CCCTCTGCAAGGCCATTCCAGAGGCGTACGCTTCGATaGACCCATGGCTTCCACAGGAGCAGTCAGGACCGT +
Preference number: 3 (lower is better)
Translates to: PSARPFQRRTLR*THGFHRSSQDR
Trigger: ACGGTCCTGACTGCTCCTGTGGAAGCCATGGGTGCATCGAAGCGTACGCCTCTGGAATGGCCTTGCAGAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CAA 90 bp CCGTTCCCGGGAGACCTAGTGGATCCTGCGCGTTGTGTAGTCCAGAACCATGCTCACGGAGGACAAGGCTaGCTGGCGGATGACGTCCTT +
Preference number: 3 (lower is better)
Translates to: PFPGDLVDPARCVVQNHAHGGQG*LADDVL
Trigger: AAGGACGTCATCCGCCAGCAAGCCTTGTCCTCCGTG...AGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCCGGGAACGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 72 bp ACGCCGCAGCTGCTATTCCCAATCATGCAGCCAGCGTaGGCGACCAGCTGTATGAACTGGTCAAACGGGACG +
Preference number: 3 (lower is better)
Translates to: TPQLLFPIMQPA*ATSCMNWSNGT
Trigger: CGTCCCGTTTGACCAGTTCATACAGCTGGTCGCCCACGCTGGCTGCATGATTGGGAATAGCAGCTGCGGCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000133709.8
ENSMUST00000174522.8
3UTR CCA 72 bp CCTGTCCTTTTCCTTGGCCGAACTTCCTCTCTGCCATaGCGGCACAGTTGCCGTCATTGTCCACCCACACGG +
Preference number: 3 (lower is better)
Translates to: PVLFLGRTSSLP*RHSCRHCPPTR
Trigger: CCGTGTGGGTGGACAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGTTCGGCCAAGGAAAAGGACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CAA 90 bp ATTCTCCCCGGTTTCTCTTCCTATCTGCCTTGTGCCCAGGTTGATCACGGGTGTTGGGTCCCCTGGAGCTaGGCTTCCAGGCAGCTGAGC +
Preference number: 3 (lower is better)
Translates to: ILPGFSSYLPCAQVDHGCWVPWS*ASRQLS
Trigger: GCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCA...ACACCCGTGATCAACCTGGGCACAAGGCAGATAGGAAGAGAAACCGGGGAGAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR-3UTR CAA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGCATTCCTGGATCAGCTaGGTTGAATGCAGCACAACT +
Preference number: 3 (lower is better)
Translates to: AERHWVPWSLASRQLSCLHSWIS*VECSTT
Trigger: AGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATG...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CAA 90 bp GTCCACATCCTGCACGGAGGACAAGGCTTGCTGGCGGATGACGTCCTTCACGATAGTGGATCCTGCGCGTaGTGTAGTCCAGAACCATGC +
Preference number: 3 (lower is better)
Translates to: VHILHGGQGLLADDVLHDSGSCA*CSPEPC
Trigger: GCATGGTTCTGGACTACACAACGCGCAGGATCCACT...ATCGTGAAGGACGTCATCCGCCAGCAAGCCTTGTCCTCCGTGCAGGATGTGGAC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR TCA 72 bp CAAGTAAAGCATCTCTCAGCAGACACAGGGGTGCGGTaGCACATCTGTCCTGTCCCGGGGTGCGGTGACACA +
Preference number: 3 (lower is better)
Translates to: QVKHLSADTGVR*HICPVPGCGDT
Trigger: TGTGTCACCGCACCCCGGGACAGGACAGATGTGTCACCGCACCCCTGTGTCTGCTGAGAGATGCTTTACTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR TCA 72 bp CCCCGGTTTCTCTTCCTATCTGCCTTGTGCCCAGGTTaGTCACGGGTGTTCCGAAAGCGCCAACCTCTCGCA +
Preference number: 3 (lower is better)
Translates to: PRFLFLSALCPG*SRVFRKRQPLA
Trigger: TGCGAGAGGTTGGCGCTTTCGGAACACCCGTGATCAACCTGGGCACAAGGCAGATAGGAAGAGAAACCGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133709.8
ENSMUST00000174522.8
3UTR TCA 72 bp TCTGGGCCTTCACGTTGCCCAGCTTGGCAGCCTGGATaGGATGGAGGGCACCCACAGCTTCGTCTTTTGGTA +
Preference number: 3 (lower is better)
Translates to: SGPSRCPAWQPG*DGGHPQLRLLV
Trigger: TACCAAAAGACGAAGCTGTGGGTGCCCTCCATCTCATCCAGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR TCA 72 bp CCACATCCTGCACGGAGGACAAGGCTTGCTGGCGGATaGCGTCCTTCACGATGTGGATGTAGTGACTGGCCA +
Preference number: 3 (lower is better)
Translates to: PHPARRTRLAGG*RPSRCGCSDWP
Trigger: TGGCCAGTCACTACATCCACATCGTGAAGGACGTCATCCGCCAGCAAGCCTTGTCCTCCGTGCAGGATGTGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR GCA 72 bp GGTGCAGGAAGTGTCCCTGGAACCCACAGCAGGGTTTaGAGTGAGATGACCCTATCAGAGCAGCCTTGGCGA +
Preference number: 3 (lower is better)
Translates to: GAGSVPGTHSRV*SEMTLSEQPWR
Trigger: TCGCCAAGGCTGCTCTGATAGGGTCATCTCACTGCAAACCCTGCTGTGGGTTCCAGGGACACTTCCTGCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 72 bp CCCCAAGTCCCAAAGCAGTTCCAGCTGTTCGTAAGATaGTCTGGGCCTTCACGTTGCCCAGCTTGGCAGCCT +
Preference number: 3 (lower is better)
Translates to: PQVPKQFQLFVR*SGPSRCPAWQP
Trigger: AGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGAGCATCTTACGAACAGCTGGAACTGCTTTGGGACTTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 72 bp GCCTTCACGTTGCCCAGCTTGGCAGCCTGGATGAGATaGAGGGCACCCACAGCTTCGTCTTTTGGTACTGAC +
Preference number: 3 (lower is better)
Translates to: AFTLPSLAAWMR*RAPTASSFGTD
Trigger: GTCAGTACCAAAAGACGAAGCTGTGGGTGCCCTCCATCTCATCCAGGCTGCCAAGCTGGGCAACGTGAAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 72 bp ATGCTCTGGGCCTTCACGTTGCCCAGCTTGGCAGCCTaGATGAGATGGAGGGCACCCACAGCTTCGTCTTTT +
Preference number: 3 (lower is better)
Translates to: MLWAFTLPSLAA*MRWRAPTASSF
Trigger: AAAAGACGAAGCTGTGGGTGCCCTCCATCTCATCCAGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGAGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CAA 90 bp TCTCTGCCATGGCGGCACAGTTGCCGTCATTGTCCACCCACACGGGGAGATGCACCTGGATCAGCTTGGTaGAATGCAGCACAACTCCTT +
Preference number: 3 (lower is better)
Translates to: SLPWRHSCRHCPPTRGDAPGSAW*NAAQLL
Trigger: AAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGG...TGCATCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGCCGCCATGGCAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR TCA 72 bp GTGTCCCTGGAACCCACAGCAGGGTTTGCAGTGAGATaGCCCTATCAGAGCAGCCTTGGCGAAAGCTCATGG +
Preference number: 3 (lower is better)
Translates to: VSLEPTAGFAVR*PYQSSLGESSW
Trigger: CCATGAGCTTTCGCCAAGGCTGCTCTGATAGGGTCATCTCACTGCAAACCCTGCTGTGGGTTCCAGGGACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR TCA 72 bp GCTCCTCAGTGGTGCTGTTTGCTGGTGCAGTCTGGGTaGGTCCGTGGCCTGCCCTATTTGCATTCACTTCTG +
Preference number: 3 (lower is better)
Translates to: APQWCCLLVQSG*VRGLPYLHSLL
Trigger: CAGAAGTGAATGCAAATAGGGCAGGCCACGGACTCACCCAGACTGCACCAGCAAACAGCACCACTGAGGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 72 bp GCCCTAGGCACTGAACAGGACTCTTGGGCTGTCCCTTaGAAGACAGCCACTGTTGGACTAGCTGAACCACAG +
Preference number: 3 (lower is better)
Translates to: ALGTEQDSWAVP*KTATVGLAEPQ
Trigger: CTGTGGTTCAGCTAGTCCAACAGTGGCTGTCTTGCAAGGGACAGCCCAAGAGTCCTGTTCAGTGCCTAGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 72 bp GTTCTCCTGTCCTTTTCCTTGGCCGAACTTCCTCTCTaGCATGGCGGCACAGTTGCCGTCATTGTCCACCCA +
Preference number: 3 (lower is better)
Translates to: VLLSFSLAELPL*HGGTVAVIVHP
Trigger: TGGGTGGACAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGTTCGGCCAAGGAAAAGGACAGGAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 72 bp ACGTGCTCCTCAGTGGTGCTGTTTGCTGGTGCAGTCTaGGTGAGTCCGTGGCCTGCCCTATTTGCATTCACT +
Preference number: 3 (lower is better)
Translates to: TCSSVVLFAGAV*VSPWPALFAFT
Trigger: AGTGAATGCAAATAGGGCAGGCCACGGACTCACCCAGACTGCACCAGCAAACAGCACCACTGAGGAGCACGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CCA 72 bp AGTCCCAAAGCAGTTCCAGCTGTTCGTAAGATGCTCTaGGCCTTCACGTTGCCCAGCTTGGCAGCCTGGATG +
Preference number: 3 (lower is better)
Translates to: SPKAVPAVRKML*AFTLPSLAAWM
Trigger: CATCCAGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGAGCATCTTACGAACAGCTGGAACTGCTTTGGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CAA 90 bp CCGTTCCCGGGAGACCTAGTGGATCCTGCGCGTTGTGTAGTCCAGAACCATGCTCCACAGCTTCGTCTTTaGGTACTGACATCCCTTCCA +
Preference number: 3 (lower is better)
Translates to: PFPGDLVDPARCVVQNHAPQLRL*VLTSLP
Trigger: TGGAAGGGATGTCAGTACCAAAAGACGAAGCTGTGG...AGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCCGGGAACGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR TCA 72 bp AGGAAGTGTCCCTGGAACCCACAGCAGGGTTTGCAGTaGGATGACCCTATCAGAGCAGCCTTGGCGAAAGCT +
Preference number: 3 (lower is better)
Translates to: RKCPWNPQQGLQ*DDPIRAALAKA
Trigger: AGCTTTCGCCAAGGCTGCTCTGATAGGGTCATCTCACTGCAAACCCTGCTGTGGGTTCCAGGGACACTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR TCA 72 bp ACAGAGAGCAGTGAAAGGCTTTCTTTCCAGAAGCTCTaGGGCCGGCCTGCCTGCCTGCAATCTCTGGGAAGA +
Preference number: 3 (lower is better)
Translates to: TESSERLSFQKL*GRPACLQSLGR
Trigger: TCTTCCCAGAGATTGCAGGCAGGCAGGCCGGCCTCAGAGCTTCTGGAAAGAAAGCCTTTCACTGCTCTCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR TCA 72 bp TCAAACGGGACGTGCTTGACTGCACGGAAATTGGGGTaGTGCTCGATGCCCTTCTTCCGCATCACTCGAACC +
Preference number: 3 (lower is better)
Translates to: SNGTCLTARKLG*CSMPFFRITRT
Trigger: GGTTCGAGTGATGCGGAAGAAGGGCATCGAGCATCACCCCAATTTCCGTGCAGTCAAGCACGTCCCGTTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133709.8
3UTR TCA 72 bp GAGGTCCACGGAGTTCCATTCCTGGATCAGCTTGGTTaGATGCAGCACAACTCCTTCCTGGGGATTCACGCG +
Preference number: 3 (lower is better)
Translates to: EVHGVPFLDQLG*MQHNSFLGIHA
Trigger: CGCGTGAATCCCCAGGAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATGGAACTCCGTGGACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR GCA 72 bp TGGCTTGTCGTTGAAGATGTGGTTTCTCAAGCTCCCTaGCCTGGCTTCCTGTTCCTGTGCCTTCCCTGCCTT +
Preference number: 3 (lower is better)
Translates to: WLVVEDVVSQAP*PGFLFLCLPCL
Trigger: AAGGCAGGGAAGGCACAGGAACAGGAAGCCAGGGCAGGGAGCTTGAGAAACCACATCTTCAACGACAAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 72 bp GCTGTTTGCTGGTGCAGTCTGGGTGAGTCCGTGGCCTaGCCTATTTGCATTCACTTCTGCTGCTGTTGGCTT +
Preference number: 3 (lower is better)
Translates to: AVCWCSLGESVA*PICIHFCCCWL
Trigger: AAGCCAACAGCAGCAGAAGTGAATGCAAATAGGGCAGGCCACGGACTCACCCAGACTGCACCAGCAAACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CCA 72 bp GTGGTGCTGTTTGCTGGTGCAGTCTGGGTGAGTCCGTaGCCTGCCCTATTTGCATTCACTTCTGCTGCTGTT +
Preference number: 3 (lower is better)
Translates to: VVLFAGAVWVSP*PALFAFTSAAV
Trigger: AACAGCAGCAGAAGTGAATGCAAATAGGGCAGGCCACGGACTCACCCAGACTGCACCAGCAAACAGCACCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CCA 72 bp GAGAGGGGTGTCCTGAGGTCCACGGAGTTCCATTCCTaGATCAGCTTGGTTGAATGCAGCACAACTCCTTCC +
Preference number: 3 (lower is better)
Translates to: ERGVLRSTEFHS*ISLVECSTTPS
Trigger: GGAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATGGAACTCCGTGGACCTCAGGACACCCCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CAA 90 bp CATGCAGCCAGCGTGGGCGACCAGCTGTATGAACTGGTCAAACGGGACGTGCTTCATTCCTGGATCAGCTaGGTTGAATGCAGCACAACT +
Preference number: 3 (lower is better)
Translates to: HAASVGDQLYELVKRDVLHSWIS*VECSTT
Trigger: AGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATG...AAGCACGTCCCGTTTGACCAGTTCATACAGCTGGTCGCCCACGCTGGCTGCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR TCA 72 bp GAGATGGAGGGCACCCACAGCTTCGTCTTTTGGTACTaGCATCCCTTCCACCAAGAGCAGGTCCTCATCATG +
Preference number: 3 (lower is better)
Translates to: EMEGTHSFVFWY*HPFHQEQVLIM
Trigger: CATGATGAGGACCTGCTCTTGGTGGAAGGGATGTCAGTACCAAAAGACGAAGCTGTGGGTGCCCTCCATCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR GCA 72 bp TGGTGCAGTCTGGGTGAGTCCGTGGCCTGCCCTATTTaGATTCACTTCTGCTGCTGTTGGCTTGTCGTTGAA +
Preference number: 3 (lower is better)
Translates to: WCSLGESVACPI*IHFCCCWLVVE
Trigger: TTCAACGACAAGCCAACAGCAGCAGAAGTGAATGCAAATAGGGCAGGCCACGGACTCACCCAGACTGCACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 72 bp TTCCACCAAGAGCAGGTCCTCATCATGGAGTTTCTTTaGTTCCCTCTGCAAGGCCATTCCAGAGGCGTACGC +
Preference number: 3 (lower is better)
Translates to: FHQEQVLIMEFL*FPLQGHSRGVR
Trigger: GCGTACGCCTCTGGAATGGCCTTGCAGAGGGAAGCAAAGAAACTCCATGATGAGGACCTGCTCTTGGTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR TCA 72 bp CACCTGTGGAGATGCCTACTCCCAGAATTCTGCAATTaGGTTTCACAGCTTCCGCGGCAGCTTCCACACACA +
Preference number: 3 (lower is better)
Translates to: HLWRCLLPEFCN*VSQLPRQLPHT
Trigger: TGTGTGTGGAAGCTGCCGCGGAAGCTGTGAAACTCAATTGCAGAATTCTGGGAGTAGGCATCTCCACAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR GCA 72 bp AGCATTAGGGAGGCTGAGAACCACTGGTTAAAGGGCTaGATAGAACCAGCCCAAGACCGGCAAGTATGTAGG +
Preference number: 3 (lower is better)
Translates to: SIREAENHWLKG*IEPAQDRQVCR
Trigger: CCTACATACTTGCCGGTCTTGGGCTGGTTCTATGCAGCCCTTTAACCAGTGGTTCTCAGCCTCCCTAATGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 72 bp CAGCTGTATGAACTGGTCAAACGGGACGTGCTTGACTaGACGGAAATTGGGGTGATGCTCGATGCCCTTCTT +
Preference number: 3 (lower is better)
Translates to: QLYELVKRDVLD*TEIGVMLDALL
Trigger: AAGAAGGGCATCGAGCATCACCCCAATTTCCGTGCAGTCAAGCACGTCCCGTTTGACCAGTTCATACAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133709.8
ENSMUST00000174522.8
3UTR-3UTR CAA 90 bp TGGGCGACCAGCTGTATGAACTGGTCAAACGGGACGTGCTTGACTGCACGGAAAACTCGAACCATCTCCTaGCTGCCTGCATCGATATTT +
Preference number: 3 (lower is better)
Translates to: WATSCMNWSNGTCLTARKTRTIS*LPASIF
Trigger: AAATATCGATGCAGGCAGCAAGGAGATGGTTCGAGT...TTTCCGTGCAGTCAAGCACGTCCCGTTTGACCAGTTCATACAGCTGGTCGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133709.8
3UTR-3UTR CAA 90 bp GATGACGTCCTTCACGATGTGGATGTAGTGACTGGCCAGGACTCCAGACAGGATCATCATGGAGTTTCTTaGCTTCCCTCTGCAAGGCCA +
Preference number: 3 (lower is better)
Translates to: DDVLHDVDVVTGQDSRQDHHGVS*LPSARP
Trigger: TGGCCTTGCAGAGGGAAGCAAAGAAACTCCATGATG...ATCCTGTCTGGAGTCCTGGCCAGTCACTACATCCACATCGTGAAGGACGTCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR-3UTR CAA 90 bp TCCGTGTCCGTTCCCGGGAGACCTAGTGGATCCTGCGCGTTGTGTAGTCCAGAAGAAACTTTAAAATCCTaGGAACAGCATTCCCATCCC +
Preference number: 3 (lower is better)
Translates to: SVSVPGRPSGSCALCSPEETLKS*EQHSHP
Trigger: GGGATGGGAATGCTGTTCCAAGGATTTTAAAGTTTC...TTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCCGGGAACGGACACGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR TCA 72 bp AATGTGTATGCTGACATTCTGGGACACAGAGAGCAGTaGAAGGCTTTCTTTCCAGAAGCTCTGAGGCCGGCC +
Preference number: 3 (lower is better)
Translates to: NVYADILGHREQ*KAFFPEALRPA
Trigger: GGCCGGCCTCAGAGCTTCTGGAAAGAAAGCCTTTCACTGCTCTCTGTGTCCCAGAATGTCAGCATACACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 72 bp GGCCCTTGCTTTCCATTCACGGTTATTAAAGCCTGCTaGACGAGTCTGACGTGTACTGAAGACCAGCTGAGA +
Preference number: 3 (lower is better)
Translates to: GPCFPFTVIKAC*TSLTCTEDQLR
Trigger: TCTCAGCTGGTCTTCAGTACACGTCAGACTCGTGCAGCAGGCTTTAATAACCGTGAATGGAAAGCAAGGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 72 bp GTTTCTCAAGCTCCCTGCCCTGGCTTCCTGTTCCTGTaGCTTCCCTGCCTTTATGAATCCTCTAGAACTGTA +
Preference number: 3 (lower is better)
Translates to: VSQAPCPGFLFL*LPCLYESSRTV
Trigger: TACAGTTCTAGAGGATTCATAAAGGCAGGGAAGGCACAGGAACAGGAAGCCAGGGCAGGGAGCTTGAGAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 72 bp GGTGAGTCCGTGGCCTGCCCTATTTGCATTCACTTCTaGTGCTGTTGGCTTGTCGTTGAAGATGTGGTTTCT +
Preference number: 3 (lower is better)
Translates to: GESVACPICIHF*CCWLVVEDVVS
Trigger: AGAAACCACATCTTCAACGACAAGCCAACAGCAGCAGAAGTGAATGCAAATAGGGCAGGCCACGGACTCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR CAA 90 bp TCCGTGTCCGTTCCCGGGAGACCTAGTGGATCCTGCGCGTTGTGTAGTCCAGAAAAAAATAAGCTTTATTaGTATGTGTGTGGAGAGGGG +
Preference number: 3 (lower is better)
Translates to: SVSVPGRPSGSCALCSPEKNKLY*YVCGEG
Trigger: CCCCTCTCCACACACATACAAATAAAGCTTATTTTT...TTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCCGGGAACGGACACGGA
50% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR CCA 72 bp GCTCTCTTTGGAAGCAAAATGTATACTCTGCCATTGTaGGTTTACCAGGACGTCGTCGTTGAGAGGTCCCCT +
Preference number: 3 (lower is better)
Translates to: ALFGSKMYTLPL*VYQDVVVERSP
Trigger: AGGGGACCTCTCAACGACGACGTCCTGGTAAACCCACAATGGCAGAGTATACATTTTGCTTCCAAAGAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CCA 72 bp GTAAAGGATTATAGCATTAGGGAGGCTGAGAACCACTaGTTAAAGGGCTGCATAGAACCAGCCCAAGACCGG +
Preference number: 3 (lower is better)
Translates to: VKDYSIREAENH*LKGCIEPAQDR
Trigger: CCGGTCTTGGGCTGGTTCTATGCAGCCCTTTAACCAGTGGTTCTCAGCCTCCCTAATGCTATAATCCTTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CCA 72 bp ACTCCAGACAGGATCACCAGGGAAGGATTCATAGTGTaGAGGATGTTCACAACCCCAAGTCCCAAAGCAGTT +
Preference number: 3 (lower is better)
Translates to: TPDRITREGFIV*RMFTTPSPKAV
Trigger: AACTGCTTTGGGACTTGGGGTTGTGAACATCCTCCACACTATGAATCCTTCCCTGGTGATCCTGTCTGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
3UTR TCA 72 bp TATTTGCATTCACTTCTGCTGCTGTTGGCTTGTCGTTaGAGATGTGGTTTCTCAAGCTCCCTGCCCTGGCTT +
Preference number: 3 (lower is better)
Translates to: YLHSLLLLLACR*RCGFSSSLPWL
Trigger: AAGCCAGGGCAGGGAGCTTGAGAAACCACATCTTCAACGACAAGCCAACAGCAGCAGAAGTGAATGCAAATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR CAA 90 bp CCTGACATGAAGAACATTCTCCCCGGTTTCTCTTCCTATCTGCCTTGTGCCCAGTTGCAATATTTTATCTaGGGTGTCAGCATCCCTGAC +
Preference number: 3 (lower is better)
Translates to: PDMKNILPGFSSYLPCAQLQYFI*GVSIPD
Trigger: GTCAGGGATGCTGACACCCAAGATAAAATATTGCAA...CTGGGCACAAGGCAGATAGGAAGAGAAACCGGGGAGAATGTTCTTCATGTCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR-3UTR CAA 90 bp AACTGGAGGTGTAGTGCTTGCAATATTTTATCTTGGGTGTCAGCATCCCTGACACCTGGATCAGCTTGGTaGAATGCAGCACAACTCCTT +
Preference number: 3 (lower is better)
Translates to: NWRCSACNILSWVSASLTPGSAW*NAAQLL
Trigger: AAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGG...TGTCAGGGATGCTGACACCCAAGATAAAATATTGCAAGCACTACACCTCCAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR TCA 72 bp TGCAATATTTTATCTTGGGTGTCAGCATCCCTGACATaGAGAACATTCTCCCCGGTTTCTCTTCCTATCTGC +
Preference number: 3 (lower is better)
Translates to: CNILSWVSASLT*RTFSPVSLPIC
Trigger: GCAGATAGGAAGAGAAACCGGGGAGAATGTTCTTCATGTCAGGGATGCTGACACCCAAGATAAAATATTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR TCA 72 bp GTGCTTGCAATATTTTATCTTGGGTGTCAGCATCCCTaGCATGAAGAACATTCTCCCCGGTTTCTCTTCCTA +
Preference number: 3 (lower is better)
Translates to: VLAIFYLGCQHP*HEEHSPRFLFL
Trigger: TAGGAAGAGAAACCGGGGAGAATGTTCTTCATGTCAGGGATGCTGACACCCAAGATAAAATATTGCAAGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR GCA 72 bp TCTGTAAAGTACAAGGAAGAAGGAAGCAATTGCTATTaGCTGGTGGCCCTTGCTTTCCATTCACGGTTATTA +
Preference number: 3 (lower is better)
Translates to: SVKYKEEGSNCY*LVALAFHSRLL
Trigger: TAATAACCGTGAATGGAAAGCAAGGGCCACCAGGCAATAGCAATTGCTTCCTTCTTCCTTGTACTTTACAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR GCA 72 bp TCCCATCCCCATATATCTTTGAGCAAGGGTACTGTTTaGCGAACTGGAGGTGTAGTGCTTGCAATATTTTAT +
Preference number: 3 (lower is better)
Translates to: SHPHISLSKGTV*RTGGVVLAIFY
Trigger: ATAAAATATTGCAAGCACTACACCTCCAGTTCGGCAAACAGTACCCTTGCTCAAAGATATATGGGGATGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR CCA 72 bp CCATATATCTTTGAGCAAGGGTACTGTTTGCCGAACTaGAGGTGTAGTGCTTGCAATATTTTATCTTGGGTG +
Preference number: 3 (lower is better)
Translates to: PYIFEQGYCLPN*RCSACNILSWV
Trigger: CACCCAAGATAAAATATTGCAAGCACTACACCTCCAGTTCGGCAAACAGTACCCTTGCTCAAAGATATATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
3UTR TCA 72 bp TCATCCAAGAAAAAGCAGATGTTAAGCTGGGTGTGGTaGTTGATTGTTTATAATCCCAGTACTCTGGAAGCG +
Preference number: 3 (lower is better)
Translates to: SSKKKQMLSWVW*LIVYNPSTLEA
Trigger: CGCTTCCAGAGTACTGGGATTATAAACAATCAATCACCACACCCAGCTTAACATCTGCTTTTTCTTGGATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR CAA 90 bp AAATTAGATAATGATAAAGCAGGGCCACAAATACAGAGCTCTTTTGGGAAAAGAGTGGTAACAGTGCAGTaGTTTGGTTGCAGTGATTAC +
Preference number: 3 (lower is better)
Translates to: KLDNDKAGPQIQSSFGKRVVTVQ*FGCSDY
Trigger: GTAATCACTGCAACCAAACAACTGCACTGTTACCAC...TCTTTTCCCAAAAGAGCTCTGTATTTGTGGCCCTGCTTTATCATTATCTAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR-3UTR CAA 90 bp AAATTAGATAATGATAAAGCAGGGCCACAAATACAGAGCTCTTTTGGGAAAAGACAGGAGTATGCCTTCTaGAAAAGTTGTGAAATGTAT +
Preference number: 3 (lower is better)
Translates to: KLDNDKAGPQIQSSFGKRQEYAF*KSCEMY
Trigger: ATACATTTCACAACTTTTCAAGAAGGCATACTCCTG...TCTTTTCCCAAAAGAGCTCTGTATTTGTGGCCCTGCTTTATCATTATCTAATTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR CCA 90 bp CCCCCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCCCCAGCTTGGCAGCCTaGATGAGATGGAGGGCACCC +
Preference number: 4 (lower is better)
Translates to: PPAERHWVPWSLASRQLSPSLAA*MRWRAP
Trigger: GGGTGCCCTCCATCTCATCCAGGCTGCCAAGCTGGG...GCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGGGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CCA 90 bp CCCCCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCAGTCCAGAACCATGCTaGCTGCGCCAAGCAGGGCCG +
Preference number: 4 (lower is better)
Translates to: PPAERHWVPWSLASRQLSSPEPC*LRQAGP
Trigger: CGGCCCTGCTTGGCGCAGCCAGCATGGTTCTGGACT...GCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGGGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR TCA 90 bp GGACCGTCCAGGGACACCACGAGATGGCCGAGCTCCGCCGCGCAGAAGGAGCTGCATCAATGGTCCCGCTaGCCTCGCCTCCTTCAATGT +
Preference number: 4 (lower is better)
Translates to: GPSRDTTRWPSSAAQKELHQWSR*PRLLQC
Trigger: ACATTGAAGGAGGCGAGGTCAGCGGGACCATTGATG...CAGCTCCTTCTGCGCGGCGGAGCTCGGCCATCTCGTGGTGTCCCTGGACGGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR CCA 90 bp CCCCCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCAGCACAACTCCTTCCTaGGGATTCACGCGGCCACCT +
Preference number: 4 (lower is better)
Translates to: PPAERHWVPWSLASRQLSSTTPS*GFTRPP
Trigger: AGGTGGCCGCGTGAATCCCCAGGAAGGAGTTGTGCT...GCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CCA 90 bp CCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCGCAGCCTGGATGAGATaGAGGGCACCCACAGCTTCG +
Preference number: 4 (lower is better)
Translates to: PAERHWVPWSLASRQLSCAAWMR*RAPTAS
Trigger: CGAAGCTGTGGGTGCCCTCCATCTCATCCAGGCTGC...GCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
3UTR CAA 72 bp GTACATCTGAGTGCAGCTGCCCCCGGCAGAGAGGCATaGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAG +
Preference number: 4 (lower is better)
Translates to: VHLSAAAPGREA*GPLELGFQAAE
Trigger: CTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGGGGGCAGCTGCACTCAGATGTAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000174522.8
CDS-3UTR CCA 90 bp CCCCCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCGTTCGTAAGATGCTCTaGGCCTTCACGTTGCCCAGC +
Preference number: 4 (lower is better)
Translates to: PPAERHWVPWSLASRQLSVRKML*AFTLPS
Trigger: GCTGGGCAACGTGAAGGCCCAGAGCATCTTACGAAC...GCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR TCA 90 bp CAGGACCGTCCAGGGACACCACGAGATGGCCGAGCTCCGCCGCGCAGAAGGAGCTCAGCATCCCTGACATaGAGAACATTCTCCCCGGTT +
Preference number: 4 (lower is better)
Translates to: QDRPGTPRDGRAPPRRRSSASLT*RTFSPV
Trigger: AACCGGGGAGAATGTTCTTCATGTCAGGGATGCTGA...GCTCCTTCTGCGCGGCGGAGCTCGGCCATCTCGTGGTGTCCCTGGACGGTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR TCA 90 bp GGACCGTCCAGGGACACCACGAGATGGCCGAGCTCCGCCGCGCAGAAGGAGCTGCCAGAATTCTGCAATTaGGTTTCACAGCTTCCGCGG +
Preference number: 4 (lower is better)
Translates to: GPSRDTTRWPSSAAQKELPEFCN*VSQLPR
Trigger: CCGCGGAAGCTGTGAAACTCAATTGCAGAATTCTGG...CAGCTCCTTCTGCGCGGCGGAGCTCGGCCATCTCGTGGTGTCCCTGGACGGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR TCA 90 bp AGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGACCGGAGAGGGGTGTCCTaGGGTCCACGGAGTTCCATT +
Preference number: 4 (lower is better)
Translates to: REALGPLELGFQAAELPDRRGVS*GPRSSI
Trigger: AATGGAACTCCGTGGACCTCAGGACACCCCTCTCCG...GTCAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR GCA 90 bp AGCTGCCCCCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCGATCAGGTGCTGCTCTaGACTTCTAGTGCAGCACAC +
Preference number: 4 (lower is better)
Translates to: SCPRQRGIGSPGAWLPGSDQVLL*TSSAAH
Trigger: GTGTGCTGCACTAGAAGTGCAGAGCAGCACCTGATC...GCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGGGGGCAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGATAGGAAGGGCAGCCTaGCAACAGGATGCGGTCGTG +
Preference number: 4 (lower is better)
Translates to: AERHWVPWSLASRQLSCLIGRAA*QQDAVV
Trigger: CACGACCGCATCCTGTTGGCAGGCTGCCCTTCCTAT...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGACGGAGGACAAGGCTTaGTGGCGGATGACGTCCTTC +
Preference number: 4 (lower is better)
Translates to: AERHWVPWSLASRQLSCLTEDKA*WRMTSF
Trigger: GAAGGACGTCATCCGCCAGCAAGCCTTGTCCTCCGT...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR TCA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGCATCAATGGTCCCGCTaGCCTCGCCTCCTTCAATGT +
Preference number: 4 (lower is better)
Translates to: AERHWVPWSLASRQLSCLHQWSR*PRLLQC
Trigger: ACATTGAAGGAGGCGAGGTCAGCGGGACCATTGATG...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR TCA 90 bp CCCCCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTCAGCATCCCTGACATaGAGAACATTCTCCCCGGTT +
Preference number: 4 (lower is better)
Translates to: PPAERHWVPWSLASRQLSSASLT*RTFSPV
Trigger: AACCGGGGAGAATGTTCTTCATGTCAGGGATGCTGA...GCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp AGAACCATGCTGGCTGCGCCAAGCAGGGCCGGGTCCACCAAGTCTGAGACCACCTGGGGTGATGCTCGATaGCCTTCTTCCGCATCACTC +
Preference number: 4 (lower is better)
Translates to: RTMLAAPSRAGSTKSETTWGDAR*PSSASL
Trigger: GAGTGATGCGGAAGAAGGGCATCGAGCATCACCCCA...GGTGGTCTCAGACTTGGTGGACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp TATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGAGAGCAGAACCATGCTGGCTaGGCCAAGCAGGGCCGGGTC +
Preference number: 4 (lower is better)
Translates to: YVCGEGYVHLSAAAPGREQNHAG*AKQGRV
Trigger: GACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCTG...CTCTCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR GCA 90 bp GAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGACATGTAGTCCAGAACCATaGTGGCTGCGCCAAGCAGGG +
Preference number: 4 (lower is better)
Translates to: ERHWVPWSLASRQLSCLTCSPEP*WLRQAG
Trigger: CCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTACA...TGTCAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CCA 90 bp CCCGGGAGACCTAGTGGATCCTGCGCGTTGTGTAGTCCAGAACCATGCTGGCTGTCACGCGGCCACCTGTaGAGATGCCTGAGCTACTCC +
Preference number: 4 (lower is better)
Translates to: PGRPSGSCALCSPEPCWLSRGHL*RCLSYS
Trigger: GGAGTAGCTCAGGCATCTCCACAGGTGGCCGCGTGA...CAGCCAGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
3UTR CAA 72 bp GTGTCCGTTCCCGGGAGACCTAGTGGATCCTGCGCGTaGTGTAGTCCAGAACCATGCTGGCTGCGCCAAGCA +
Preference number: 4 (lower is better)
Translates to: VSVPGRPSGSCA*CSPEPCWLRQA
Trigger: TGCTTGGCGCAGCCAGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCCGGGAACGGACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
CDS-3UTR TCA 90 bp CCGTTCCCGGGAGACCTAGTGGATCCTGCGCGTTGTGTAGTCCAGAACCATGCTCGGGCTTCAGGCGATTaGGGACGTCCGGTAGCTTCA +
Preference number: 4 (lower is better)
Translates to: PFPGDLVDPARCVVQNHARASGD*GRPVAS
Trigger: TGAAGCTACCGGACGTCCTCAATCGCCTGAAGCCCG...AGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCCGGGAACGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR TCA 90 bp GAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGACAGCACGGAAATTGGGGTaGTGCTCGATGCCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: ERHWVPWSLASRQLSCLTARKLG*CSMPFF
Trigger: GAAGAAGGGCATCGAGCATCACCCCAATTTCCGTGC...TGTCAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR TCA 90 bp CCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCTCAGCATCCCTGACATaGAGAACATTCTCCCCGGTT +
Preference number: 4 (lower is better)
Translates to: PAERHWVPWSLASRQLSCSASLT*RTFSPV
Trigger: AACCGGGGAGAATGTTCTTCATGTCAGGGATGCTGA...GCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR TCA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGGGGTGTCAGCATCCCTaGCATGAAGAACATTCTCCC +
Preference number: 4 (lower is better)
Translates to: AERHWVPWSLASRQLSCLGCQHP*HEEHSP
Trigger: GGGAGAATGTTCTTCATGTCAGGGATGCTGACACCC...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp TTGTGTAGTCCAGAACCATGCTGGCTGCGCCAAGCAGGGCCGGGTCCACCAAGTATAGGAAGGGCAGCCTaGCAACAGGATGCGGTCGTG +
Preference number: 4 (lower is better)
Translates to: LCSPEPCWLRQAGPGPPSIGRAA*QQDAVV
Trigger: CACGACCGCATCCTGTTGGCAGGCTGCCCTTCCTAT...ACTTGGTGGACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTACACAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp TTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGACAGAACCATGCTGGCTaGGCCAAGCAGGGCCGGGTC +
Preference number: 4 (lower is better)
Translates to: LYVCGEGYVHLSAAAPGRQNHAG*AKQGRV
Trigger: GACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCTG...TCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CCA 90 bp AGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGACGCTTCGATGCACCCATaGCTTCCACAGGAGCAGTCA +
Preference number: 4 (lower is better)
Translates to: REALGPLELGFQAAELPDASMHP*LPQEQS
Trigger: TGACTGCTCCTGTGGAAGCCATGGGTGCATCGAAGC...GTCAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCCCAGCTTGGCAGCCTaGATGAGATGGAGGGCACCC +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSPSLAA*MRWRAP
Trigger: GGGTGCCCTCCATCTCATCCAGGCTGCCAAGCTGGG...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGTGTGGATGTAGTGACTaGCCAGGACTCCAGACAGGA +
Preference number: 4 (lower is better)
Translates to: AERHWVPWSLASRQLSCLCGCSD*PGLQTG
Trigger: TCCTGTCTGGAGTCCTGGCCAGTCACTACATCCACA...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCAGTCCAGAACCATGCTaGCTGCGCCAAGCAGGGCCG +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSSPEPC*LRQAGP
Trigger: CGGCCCTGCTTGGCGCAGCCAGCATGGTTCTGGACT...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
3UTR CAA 72 bp GTTCGTAAGATGCTCTGGGCCTTCACGTTGCCCAGCTaGGCAGCCTGGATGAGATGGAGGGCACCCACAGCT +
Preference number: 4 (lower is better)
Translates to: VRKMLWAFTLPS*AAWMRWRAPTA
Trigger: AGCTGTGGGTGCCCTCCATCTCATCCAGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGAGCATCTTACGAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
CDS-3UTR TCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGCTTCAGGCGATTaGGGACGTCCGGTAGCTTCA +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSRASGD*GRPVAS
Trigger: TGAAGCTACCGGACGTCCTCAATCGCCTGAAGCCCG...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR TCA 90 bp CTTCGATGCACCCATGGCTTCCACAGGAGCAGTCAGGACCGTCCAGGGACACCAGCACGGAAATTGGGGTaGTGCTCGATGCCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: LRCTHGFHRSSQDRPGTPARKLG*CSMPFF
Trigger: GAAGAAGGGCATCGAGCATCACCCCAATTTCCGTGC...TGGTGTCCCTGGACGGTCCTGACTGCTCCTGTGGAAGCCATGGGTGCATCGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR TCA 90 bp GCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGAGCACGGAAATTGGGGTaGTGCTCGATGCCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: AWFHSKQLPSLCPCPFPGARKLG*CSMPFF
Trigger: GAAGAAGGGCATCGAGCATCACCCCAATTTCCGTGC...TCCCGGGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR TCA 90 bp AGCTGCCCCCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCATCCCCATATATCTTTaGGCAAGGGTACTGTTTGCC +
Preference number: 4 (lower is better)
Translates to: SCPRQRGIGSPGAWLPGSIPIYL*ARVLFA
Trigger: GGCAAACAGTACCCTTGCTCAAAGATATATGGGGAT...GCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGGGGGCAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp GCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGATGGGGTGATGCTCGATaGCCTTCTTCCGCATCACTC +
Preference number: 4 (lower is better)
Translates to: AWFHSKQLPSLCPCPFPGWGDAR*PSSASL
Trigger: GAGTGATGCGGAAGAAGGGCATCGAGCATCACCCCA...TCCCGGGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp CCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCGTTTCTCTTCCTATCTaGCTTGTGCCCAGGTTGATC +
Preference number: 4 (lower is better)
Translates to: PAERHWVPWSLASRQLSCVSLPI*LVPRLI
Trigger: GATCAACCTGGGCACAAGGCAGATAGGAAGAGAAAC...GCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp AGCTGCCCCCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCATCATGGAGTTTCTTTaGTTCCCTCTGCAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: SCPRQRGIGSPGAWLPGSIMEFL*FPLQGH
Trigger: ATGGCCTTGCAGAGGGAAGCAAAGAAACTCCATGAT...GCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGGGGGCAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR GCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCTCTGGGCCTTCACGTTaGCCAGCTTGGCAGCCTGGA +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSSGPSR*PAWQPG
Trigger: TCCAGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGA...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp TATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGAGAGGCAGCCTGGATGAGATaGAGGGCACCCACAGCTTCG +
Preference number: 4 (lower is better)
Translates to: YVCGEGYVHLSAAAPGREAAWMR*RAPTAS
Trigger: CGAAGCTGTGGGTGCCCTCCATCTCATCCAGGCTGC...CTCTCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCGCAGCCTGGATGAGATaGAGGGCACCCACAGCTTCG +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSAAWMR*RAPTAS
Trigger: CGAAGCTGTGGGTGCCCTCCATCTCATCCAGGCTGC...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR TCA 90 bp TTTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGCGGGCTTCAGGCGATTaGGGACGTCCGGTAGCTTCA +
Preference number: 4 (lower is better)
Translates to: FVCVWRGVCTSECSCPRQRASGD*GRPVAS
Trigger: TGAAGCTACCGGACGTCCTCAATCGCCTGAAGCCCG...CTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR TCA 90 bp GAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGACATCGCCTCCTTCAATGTaGAGGATGCGGATGTTCATC +
Preference number: 4 (lower is better)
Translates to: ERHWVPWSLASRQLSCLTSPPSM*RMRMFI
Trigger: GATGAACATCCGCATCCTTCACATTGAAGGAGGCGA...TGTCAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR TCA 90 bp GACACCACGAGATGGCCGAGCTCCGCCGCGCAGAAGGAGCTGCCGTGGATCAGTATCCCCATATATCTTTaGGCAAGGGTACTGTTTGCC +
Preference number: 4 (lower is better)
Translates to: DTTRWPSSAAQKELPWISIPIYL*ARVLFA
Trigger: GGCAAACAGTACCCTTGCTCAAAGATATATGGGGAT...ACTGATCCACGGCAGCTCCTTCTGCGCGGCGGAGCTCGGCCATCTCGTGGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR TCA 90 bp AGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGACCCAGAATTCTGCAATTaGGTTTCACAGCTTCCGCGG +
Preference number: 4 (lower is better)
Translates to: REALGPLELGFQAAELPDPEFCN*VSQLPR
Trigger: CCGCGGAAGCTGTGAAACTCAATTGCAGAATTCTGG...GTCAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR TCA 90 bp CTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTCGGAGAGGGGTGTCCTaGGGTCCACGGAGTTCCATT +
Preference number: 4 (lower is better)
Translates to: LEEHGSTLSSSRVSVRVRRRGVS*GPRSSI
Trigger: AATGGAACTCCGTGGACCTCAGGACACCCCTCTCCG...ACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR GCA 90 bp CCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCGAACCATCTCCTTGCTaGCTGCATCGATATTTGGAA +
Preference number: 4 (lower is better)
Translates to: PAERHWVPWSLASRQLSCEPSPC*LHRYLE
Trigger: TTCCAAATATCGATGCAGGCAGCAAGGAGATGGTTC...GCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGCTCGAACCATCTCCTTaGTGCCTGCATCGATATTTG +
Preference number: 4 (lower is better)
Translates to: AERHWVPWSLASRQLSCLLEPSP*CLHRYL
Trigger: CAAATATCGATGCAGGCAGCAAGGAGATGGTTCGAG...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp TTCCCTCTGCAAGGCCATTCCAGAGGCGTACGCTTCGATGCACCCATGGCTTCCTGCTATTCCCAATCATaGAGCCAGCGTGGGCGACCA +
Preference number: 4 (lower is better)
Translates to: FPLQGHSRGVRFDAPMASCYSQS*SQRGRP
Trigger: TGGTCGCCCACGCTGGCTGCATGATTGGGAATAGCA...GGAAGCCATGGGTGCATCGAAGCGTACGCCTCTGGAATGGCCTTGCAGAGGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp TTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGACCGCGCAGAAGGAGCTaGCGTGGATCAGTTCGTGCT +
Preference number: 4 (lower is better)
Translates to: LYVCGEGYVHLSAAAPGRPRRRS*RGSVRA
Trigger: AGCACGAACTGATCCACGGCAGCTCCTTCTGCGCGG...TCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR GCA 90 bp CTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTCCGCGCAGAAGGAGCTaGCGTGGATCAGTTCGTGCT +
Preference number: 4 (lower is better)
Translates to: LEEHGSTLSSSRVSVRVRPRRRS*RGSVRA
Trigger: AGCACGAACTGATCCACGGCAGCTCCTTCTGCGCGG...ACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCAGGCGTACGCTTCGATaGACCCATGGCTTCCACAGG +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSRRTLR*THGFHR
Trigger: CCTGTGGAAGCCATGGGTGCATCGAAGCGTACGCCT...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp CTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCTGGGCCTTCACGTTaGCCAGCTTGGCAGCCTGGA +
Preference number: 4 (lower is better)
Translates to: LEEHGSTLSSSRVSVRVRSGPSR*PAWQPG
Trigger: TCCAGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGA...ACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCACGGAGGACAAGGCTTaGTGGCGGATGACGTCCTTC +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSTEDKA*WRMTSF
Trigger: GAAGGACGTCATCCGCCAGCAAGCCTTGTCCTCCGT...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTCAGAACCATGCTGGCTaGGCCAAGCAGGGCCGGGTC +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRQNHAG*AKQGRV
Trigger: GACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCTG...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp CCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCTACTGTTTGCCGAACTaGAGGTGTAGTGCTTGCAAT +
Preference number: 4 (lower is better)
Translates to: PAERHWVPWSLASRQLSCYCLPN*RCSACN
Trigger: ATTGCAAGCACTACACCTCCAGTTCGGCAAACAGTA...GCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR CCA 90 bp CCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCATTCCTGGATCAGCTTaGTTGAATGCAGCACAACTC +
Preference number: 4 (lower is better)
Translates to: PAERHWVPWSLASRQLSCIPGSA*LNAAQL
Trigger: GAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAAT...GCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCGAGGACAAGGCTTGCTaGCGGATGACGTCCTTCACG +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSEDKAC*RMTSFT
Trigger: CGTGAAGGACGTCATCCGCCAGCAAGCCTTGTCCTC...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
3UTR CAA 72 bp TCCCCGGTTTCTCTTCCTATCTGCCTTGTGCCCAGGTaGATCACGGGTGTTCCGAAAGCGCCAACCTCTCGC +
Preference number: 4 (lower is better)
Translates to: SPVSLPICLVPR*ITGVPKAPTSR
Trigger: GCGAGAGGTTGGCGCTTTCGGAACACCCGTGATCAACCTGGGCACAAGGCAGATAGGAAGAGAAACCGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000133709.8
ENSMUST00000174522.8
3UTR CAA 72 bp GTTCCAGCTGTTCGTAAGATGCTCTGGGCCTTCACGTaGCCCAGCTTGGCAGCCTGGATGAGATGGAGGGCA +
Preference number: 4 (lower is better)
Translates to: VPAVRKMLWAFT*PSLAAWMRWRA
Trigger: TGCCCTCCATCTCATCCAGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGAGCATCTTACGAACAGCTGGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172533.8
ENSMUST00000174522.8
CDS-3UTR GCA 90 bp AGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGACCACATAGAGATCAGGTaGTGCTCTGCACTTCTAGTG +
Preference number: 4 (lower is better)
Translates to: REALGPLELGFQAAELPDHIEIR*CSALLV
Trigger: CACTAGAAGTGCAGAGCAGCACCTGATCTCTATGTG...GTCAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp CTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTATAGGAAGGGCAGCCTaGCAACAGGATGCGGTCGTG +
Preference number: 4 (lower is better)
Translates to: LEEHGSTLSSSRVSVRVRIGRAA*QQDAVV
Trigger: CACGACCGCATCCTGTTGGCAGGCTGCCCTTCCTAT...ACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp CCCCCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGGAGGTGTAGTGCTTaGAATATTTTATCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: PPAERHWVPWSLASRQLSWRCSA*NILSWV
Trigger: CACCCAAGATAAAATATTGCAAGCACTACACCTCCA...GCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp GATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCTCTGGGCCTTCACGTTaGCCAGCTTGGCAGCCTGGA +
Preference number: 4 (lower is better)
Translates to: DLEEHGSTLSSSRVSVRVSGPSR*PAWQPG
Trigger: TCCAGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGA...GACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp TTTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGCAGAAGGAGCTGCCGTaGATCAGTTCGTGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: FVCVWRGVCTSECSCPRQQKELP*ISSCWW
Trigger: CCACCAGCACGAACTGATCCACGGCAGCTCCTTCTG...CTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CCA 90 bp CTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTCAGAAGGAGCTGCCGTaGATCAGTTCGTGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: LEEHGSTLSSSRVSVRVRQKELP*ISSCWW
Trigger: CCACCAGCACGAACTGATCCACGGCAGCTCCTTCTG...ACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp TTTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGGAGGACAAGGCTTGCTaGCGGATGACGTCCTTCACG +
Preference number: 4 (lower is better)
Translates to: FVCVWRGVCTSECSCPRQEDKAC*RMTSFT
Trigger: CGTGAAGGACGTCATCCGCCAGCAAGCCTTGTCCTC...CTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
3UTR CAA 72 bp CTGTCCCGGGGTGCGGTGACACATCTGTCCAATCCCTaGGCTGGTGGTGGCTACTTAACAGGAGTATGCCTT +
Preference number: 4 (lower is better)
Translates to: LSRGAVTHLSNP*AGGGYLTGVCL
Trigger: AAGGCATACTCCTGTTAAGTAGCCACCACCAGCCAAGGGATTGGACAGATGTGTCACCGCACCCCGGGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR TCA 90 bp CTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTCATCAATGGTCCCGCTaGCCTCGCCTCCTTCAATGT +
Preference number: 4 (lower is better)
Translates to: LEEHGSTLSSSRVSVRVRHQWSR*PRLLQC
Trigger: ACATTGAAGGAGGCGAGGTCAGCGGGACCATTGATG...ACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR TCA 90 bp CCAGCCCTAGGCACTGAACAGGACTCTTGGGCTGTCCCTTGCAAGACAGCCACTCTGGATCAGCTTGGTTaGATGCAGCACAACTCCTTC +
Preference number: 4 (lower is better)
Translates to: PALGTEQDSWAVPCKTATLDQLG*MQHNSF
Trigger: GAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAG...AGTGGCTGTCTTGCAAGGGACAGCCCAAGAGTCCTGTTCAGTGCCTAGGGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR GCA 90 bp GAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGACACTTCAATGTGAAGGATaGGGATGTTCATCAAGGCAG +
Preference number: 4 (lower is better)
Translates to: ERHWVPWSLASRQLSCLTLQCEG*GCSSRQ
Trigger: CTGCCTTGATGAACATCCGCATCCTTCACATTGAAG...TGTCAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp GATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCTGTAGTCCAGAACCATaGTGGCTGCGCCAAGCAGGG +
Preference number: 4 (lower is better)
Translates to: DLEEHGSTLSSSRVSVRVCSPEP*WLRQAG
Trigger: CCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTACA...GACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp TTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGAACTTCCTCTCTGCCATaGCGGCACAGTTGCCGTCAT +
Preference number: 4 (lower is better)
Translates to: LYVCGEGYVHLSAAAPGRTSSLP*RHSCRH
Trigger: ATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGT...TCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CCA 90 bp CTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTGCTTCGATGCACCCATaGCTTCCACAGGAGCAGTCA +
Preference number: 4 (lower is better)
Translates to: LEEHGSTLSSSRVSVRVRASMHP*LPQEQS
Trigger: TGACTGCTCCTGTGGAAGCCATGGGTGCATCGAAGC...ACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp CTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTGTTCGTAAGATGCTCTaGGCCTTCACGTTGCCCAGC +
Preference number: 4 (lower is better)
Translates to: LEEHGSTLSSSRVSVRVRVRKML*AFTLPS
Trigger: GCTGGGCAACGTGAAGGCCCAGAGCATCTTACGAAC...ACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp AACACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCAGTCCAGAACCATGCTaGCTGCGCCAAGCAGGGCCG +
Preference number: 4 (lower is better)
Translates to: NTDLEEHGSTLSSSRVSVSPEPC*LRQAGP
Trigger: CGGCCCTGCTTGGCGCAGCCAGCATGGTTCTGGACT...GACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
3UTR CAA 72 bp GTCCTAAGTCTTCTGGGTCAGGTGCTATTGCTCCTTTaGGTGCAGGAAGTGTCCCTGGAACCCACAGCAGGG +
Preference number: 4 (lower is better)
Translates to: VLSLLGQVLLLL*VQEVSLEPTAG
Trigger: CCCTGCTGTGGGTTCCAGGGACACTTCCTGCACCAAAAGGAGCAATAGCACCTGACCCAGAAGACTTAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR TCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCTCGCCTCCTTCAATGTaGAGGATGCGGATGTTCATC +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSSPPSM*RMRMFI
Trigger: GATGAACATCCGCATCCTTCACATTGAAGGAGGCGA...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR TCA 90 bp GATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCATCAATGGTCCCGCTaGCCTCGCCTCCTTCAATGT +
Preference number: 4 (lower is better)
Translates to: DLEEHGSTLSSSRVSVRVHQWSR*PRLLQC
Trigger: ACATTGAAGGAGGCGAGGTCAGCGGGACCATTGATG...GACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR TCA 90 bp TTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGAGGGTGTCAGCATCCCTaGCATGAAGAACATTCTCCC +
Preference number: 4 (lower is better)
Translates to: LYVCGEGYVHLSAAAPGRGCQHP*HEEHSP
Trigger: GGGAGAATGTTCTTCATGTCAGGGATGCTGACACCC...TCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp TTTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGGATCAGGTGCTGCTCTaGACTTCTAGTGCAGCACAC +
Preference number: 4 (lower is better)
Translates to: FVCVWRGVCTSECSCPRQDQVLL*TSSAAH
Trigger: GTGTGCTGCACTAGAAGTGCAGAGCAGCACCTGATC...CTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp TTGTGTAGTCCAGAACCATGCTGGCTGCGCCAAGCAGGGCCGGGTCCACCAAGTGAACCATCTCCTTGCTaGCTGCATCGATATTTGGAA +
Preference number: 4 (lower is better)
Translates to: LCSPEPCWLRQAGPGPPSEPSPC*LHRYLE
Trigger: TTCCAAATATCGATGCAGGCAGCAAGGAGATGGTTC...ACTTGGTGGACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTACACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp GATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCTGCTATTCCCAATCATaGAGCCAGCGTGGGCGACCA +
Preference number: 4 (lower is better)
Translates to: DLEEHGSTLSSSRVSVRVCYSQS*SQRGRP
Trigger: TGGTCGCCCACGCTGGCTGCATGATTGGGAATAGCA...GACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGGCTTCCACACACATCTaGAGGATTAAACTAATCCTT +
Preference number: 4 (lower is better)
Translates to: AERHWVPWSLASRQLSCLASTHI*RIKLIL
Trigger: AAGGATTAGTTTAATCCTGCAGATGTGTGTGGAAGC...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTAGGCGTACGCTTCGATaGACCCATGGCTTCCACAGG +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRRRTLR*THGFHR
Trigger: CCTGTGGAAGCCATGGGTGCATCGAAGCGTACGCCT...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTACCACGTCCACATCCTaGACGGAGGACAAGGCTTGC +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRTTSTS*TEDKAC
Trigger: GCAAGCCTTGTCCTCCGTGCAGGATGTGGACGTGGT...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTTGTAGTCCAGAACCATaGTGGCTGCGCCAAGCAGGG +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRCSPEP*WLRQAG
Trigger: CCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTACA...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp GCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGACCTCTAACAATCGTGTaGAGCCTGGTGTTAATGTCA +
Preference number: 4 (lower is better)
Translates to: AWFHSKQLPSLCPCPFPGPLTIV*SLVLMS
Trigger: TGACATTAACACCAGGCTCCACACGATTGTTAGAGG...TCCCGGGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp TTGTGTAGTCCAGAACCATGCTGGCTGCGCCAAGCAGGGCCGGGTCCACCAAGTTACTGTTTGCCGAACTaGAGGTGTAGTGCTTGCAAT +
Preference number: 4 (lower is better)
Translates to: LCSPEPCWLRQAGPGPPSYCLPN*RCSACN
Trigger: ATTGCAAGCACTACACCTCCAGTTCGGCAAACAGTA...ACTTGGTGGACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTACACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR CCA 90 bp GATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCGCTTCGATGCACCCATaGCTTCCACAGGAGCAGTCA +
Preference number: 4 (lower is better)
Translates to: DLEEHGSTLSSSRVSVRVASMHP*LPQEQS
Trigger: TGACTGCTCCTGTGGAAGCCATGGGTGCATCGAAGC...GACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
3UTR CAA 72 bp GACACTCATGGCCCCGATAGGTATGAAGCTGCAGGGTaGGAGTTTGTCCTGCTGAGTTCTCCCTGCCTCTTT +
Preference number: 4 (lower is better)
Translates to: DTHGPDRYEAAG*EFVLLSSPCLF
Trigger: AAAGAGGCAGGGAGAACTCAGCAGGACAAACTCCAACCCTGCAGCTTCATACCTATCGGGGCCATGAGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CAA 72 bp GTCCTGAGGTCCACGGAGTTCCATTCCTGGATCAGCTaGGTTGAATGCAGCACAACTCCTTCCTGGGGATTC +
Preference number: 4 (lower is better)
Translates to: VLRSTEFHSWIS*VECSTTPSWGF
Trigger: GAATCCCCAGGAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATGGAACTCCGTGGACCTCAGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
CDS-3UTR TCA 90 bp CTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCAGCATCCCTGACATaGAGAACATTCTCCCCGGTT +
Preference number: 4 (lower is better)
Translates to: LEEHGSTLSSSRVSVRVRSASLT*RTFSPV
Trigger: AACCGGGGAGAATGTTCTTCATGTCAGGGATGCTGA...ACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR TCA 90 bp GATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCGGGTGTCAGCATCCCTaGCATGAAGAACATTCTCCC +
Preference number: 4 (lower is better)
Translates to: DLEEHGSTLSSSRVSVRVGCQHP*HEEHSP
Trigger: GGGAGAATGTTCTTCATGTCAGGGATGCTGACACCC...GACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR TCA 90 bp TTTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGCTGGATCAGCTTGGTTaGATGCAGCACAACTCCTTC +
Preference number: 4 (lower is better)
Translates to: FVCVWRGVCTSECSCPRQLDQLG*MQHNSF
Trigger: GAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAG...CTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR GCA 90 bp GAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGACAATGTCAAAGTCATCTTaGTCAATCATGCGGTATGTG +
Preference number: 4 (lower is better)
Translates to: ERHWVPWSLASRQLSCLTMSKSS*SIMRYV
Trigger: CACATACCGCATGATTGAGCAAGATGACTTTGACAT...TGTCAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp GATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCGATCAGGTGCTGCTCTaGACTTCTAGTGCAGCACAC +
Preference number: 4 (lower is better)
Translates to: DLEEHGSTLSSSRVSVRVDQVLL*TSSAAH
Trigger: GTGTGCTGCACTAGAAGTGCAGAGCAGCACCTGATC...GACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp AACACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCATAGGAAGGGCAGCCTaGCAACAGGATGCGGTCGTG +
Preference number: 4 (lower is better)
Translates to: NTDLEEHGSTLSSSRVSVIGRAA*QQDAVV
Trigger: CACGACCGCATCCTGTTGGCAGGCTGCCCTTCCTAT...GACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCTCGAACCATCTCCTTaGTGCCTGCATCGATATTTG +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSLEPSP*CLHRYL
Trigger: CAAATATCGATGCAGGCAGCAAGGAGATGGTTCGAG...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTTGGGGTGATGCTCGATaGCCTTCTTCCGCATCACTC +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRWGDAR*PSSASL
Trigger: GAGTGATGCGGAAGAAGGGCATCGAGCATCACCCCA...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTTGCTATTCCCAATCATaGAGCCAGCGTGGGCGACCA +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRCYSQS*SQRGRP
Trigger: TGGTCGCCCACGCTGGCTGCATGATTGGGAATAGCA...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCGTTTCTCTTCCTATCTaGCTTGTGCCCAGGTTGATC +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSVSLPI*LVPRLI
Trigger: GATCAACCTGGGCACAAGGCAGATAGGAAGAGAAAC...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp ACGGAGTTCCATTCCTGGATCAGCTTGGTTGAATGCAGCACAACTCCTTCCTGGGGCCACCTGTGGAGATaGCTGAGCTACTCCCAGAAT +
Preference number: 4 (lower is better)
Translates to: TEFHSWISLVECSTTPSWGHLWR*LSYSQN
Trigger: ATTCTGGGAGTAGCTCAGGCATCTCCACAGGTGGCC...CCAGGAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATGGAACTCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR CCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCAGCAGGTCCTCATCATaGAGTTTCTTTGCTTCCCTC +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSSRSSS*SFFASL
Trigger: GAGGGAAGCAAAGAAACTCCATGATGAGGACCTGCT...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTTCGTAAGATGCTCTaGGCCTTCACGTTGCCCAGC +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRVRKML*AFTLPS
Trigger: GCTGGGCAACGTGAAGGCCCAGAGCATCTTACGAAC...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR TCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTCTCCGTGAACAATCATaGTGTCGGGCTTCAGGCGAT +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRLREQS*CRASGD
Trigger: ATCGCCTGAAGCCCGACATCATGATTGTTCACGGAG...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR TCA 90 bp TTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGATTCGTCTTTTGGTACTaGCATCCCTTCCACCAAGAG +
Preference number: 4 (lower is better)
Translates to: LYVCGEGYVHLSAAAPGRFVFWY*HPFHQE
Trigger: CTCTTGGTGGAAGGGATGTCAGTACCAAAAGACGAA...TCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR GCA 90 bp GGCCGAACTTCCTCTCTGCCATGGCGGCACAGTTGCCGTCATTGTCCACCCACAATGTCAAAGTCATCTTaGTCAATCATGCGGTATGTG +
Preference number: 4 (lower is better)
Translates to: GRTSSLPWRHSCRHCPPTMSKSS*SIMRYV
Trigger: CACATACCGCATGATTGAGCAAGATGACTTTGACAT...TGTGGGTGGACAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGTTCGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCTTCAATGTGAAGGATaGGGATGTTCATCAAGGCAG +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSLQCEG*GCSSRQ
Trigger: CTGCCTTGATGAACATCCGCATCCTTCACATTGAAG...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp CTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTCACATAGAGATCAGGTaGTGCTCTGCACTTCTAGTG +
Preference number: 4 (lower is better)
Translates to: LEEHGSTLSSSRVSVRVRHIEIR*CSALLV
Trigger: CACTAGAAGTGCAGAGCAGCACCTGATCTCTATGTG...ACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp AACACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCTGCTATTCCCAATCATaGAGCCAGCGTGGGCGACCA +
Preference number: 4 (lower is better)
Translates to: NTDLEEHGSTLSSSRVSVCYSQS*SQRGRP
Trigger: TGGTCGCCCACGCTGGCTGCATGATTGGGAATAGCA...GACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp GCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGATGGAGGTGTAGTGCTTaGAATATTTTATCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: AWFHSKQLPSLCPCPFPGWRCSA*NILSWV
Trigger: CACCCAAGATAAAATATTGCAAGCACTACACCTCCA...TCCCGGGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp TTCCTCTCTGCCATGGCGGCACAGTTGCCGTCATTGTCCACCCACACGGGGAGAGCTTCCACACACATCTaGAGGATTAAACTAATCCTT +
Preference number: 4 (lower is better)
Translates to: FLSAMAAQLPSLSTHTGRASTHI*RIKLIL
Trigger: AAGGATTAGTTTAATCCTGCAGATGTGTGTGGAAGC...TCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp GCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGAGCTTCCACACACATCTaGAGGATTAAACTAATCCTT +
Preference number: 4 (lower is better)
Translates to: AWFHSKQLPSLCPCPFPGASTHI*RIKLIL
Trigger: AAGGATTAGTTTAATCCTGCAGATGTGTGTGGAAGC...TCCCGGGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp AGGACTAGTAAACTAAGCCTTCCCATGATGCTAGCTAGCATCCCGAGGTCTATGACGGAGGACAAGGCTTaGTGGCGGATGACGTCCTTC +
Preference number: 4 (lower is better)
Translates to: RTSKLSLPMMLASIPRSMTEDKA*WRMTSF
Trigger: GAAGGACGTCATCCGCCAGCAAGCCTTGTCCTCCGT...CATAGACCTCGGGATGCTAGCTAGCATCATGGGAAGGCTTAGTTTACTAGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR CCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCCTCTAACAATCGTGTaGAGCCTGGTGTTAATGTCA +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSPLTIV*SLVLMS
Trigger: TGACATTAACACCAGGCTCCACACGATTGTTAGAGG...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp TATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGAGAGTACTGTTTGCCGAACTaGAGGTGTAGTGCTTGCAAT +
Preference number: 4 (lower is better)
Translates to: YVCGEGYVHLSAAAPGREYCLPN*RCSACN
Trigger: ATTGCAAGCACTACACCTCCAGTTCGGCAAACAGTA...CTCTCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR CCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCTACTGTTTGCCGAACTaGAGGTGTAGTGCTTGCAAT +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSYCLPN*RCSACN
Trigger: ATTGCAAGCACTACACCTCCAGTTCGGCAAACAGTA...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp CTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTACGGAGTTCCATTCCTaGATCAGCTTGGTTGAATGC +
Preference number: 4 (lower is better)
Translates to: LEEHGSTLSSSRVSVRVRTEFHS*ISLVEC
Trigger: GCATTCAACCAAGCTGATCCAGGAATGGAACTCCGT...ACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CCA 90 bp TATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGAGAGGAAGGATTCATAGTGTaGAGGATGTTCACAACCCCA +
Preference number: 4 (lower is better)
Translates to: YVCGEGYVHLSAAAPGREEGFIV*RMFTTP
Trigger: TGGGGTTGTGAACATCCTCCACACTATGAATCCTTC...CTCTCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTTGTGGATGTAGTGACTaGCCAGGACTCCAGACAGGA +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRCGCSD*PGLQTG
Trigger: TCCTGTCTGGAGTCCTGGCCAGTCACTACATCCACA...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR TCA 90 bp GCTCCTTTTGGTGCAGGAAGTGTCCCTGGAACCCACAGCAGGGTTTGCAGTGAGTCCCGTTCTTCTCCATaGCTTGCTTCTTTTTACTTG +
Preference number: 4 (lower is better)
Translates to: APFGAGSVPGTHSRVCSESRSSP*LASFYL
Trigger: CAAGTAAAAAGAAGCAAGTCATGGAGAAGAACGGGA...CTCACTGCAAACCCTGCTGTGGGTTCCAGGGACACTTCCTGCACCAAAAGGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR TCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTTCGCCTCCTTCAATGTaGAGGATGCGGATGTTCATC +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRSPPSM*RMRMFI
Trigger: GATGAACATCCGCATCCTTCACATTGAAGGAGGCGA...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR TCA 90 bp GCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGAGTTTTAGGGTTGAACTaGGTGTACTTCTTAACGATT +
Preference number: 4 (lower is better)
Translates to: AWFHSKQLPSLCPCPFPGVLGLN*VYFLTI
Trigger: AATCGTTAAGAAGTACACTCAGTTCAACCCTAAAAC...TCCCGGGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR TCA 90 bp AAGTCTTCTGGGTCAGGTGCTATTGCTCCTTTTGGTGCAGGAAGTGTCCCTGGACCAGAATTCTGCAATTaGGTTTCACAGCTTCCGCGG +
Preference number: 4 (lower is better)
Translates to: KSSGSGAIAPFGAGSVPGPEFCN*VSQLPR
Trigger: CCGCGGAAGCTGTGAAACTCAATTGCAGAATTCTGG...TCCAGGGACACTTCCTGCACCAAAAGGAGCAATAGCACCTGACCCAGAAGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR TCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTCCAGAATTCTGCAATTaGGTTTCACAGCTTCCGCGG +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRPEFCN*VSQLPR
Trigger: CCGCGGAAGCTGTGAAACTCAATTGCAGAATTCTGG...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp CCGTTCCCGGGAGACCTAGTGGATCCTGCGCGTTGTGTAGTCCAGAACCATGCTCATCTTGCTCAATCATaGGGTATGTGTTTCCATAGT +
Preference number: 4 (lower is better)
Translates to: PFPGDLVDPARCVVQNHAHLAQS*GMCFHS
Trigger: ACTATGGAAACACATACCGCATGATTGAGCAAGATG...AGCATGGTTCTGGACTACACAACGCGCAGGATCCACTAGGTCTCCCGGGAACGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp AACACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCGATCAGGTGCTGCTCTaGACTTCTAGTGCAGCACAC +
Preference number: 4 (lower is better)
Translates to: NTDLEEHGSTLSSSRVSVDQVLL*TSSAAH
Trigger: GTGTGCTGCACTAGAAGTGCAGAGCAGCACCTGATC...GACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp GTGGATGTAGTGACTGGCCAGGACTCCAGACAGGATCACCAGGGAAGGATTCATCTCGAACCATCTCCTTaGTGCCTGCATCGATATTTG +
Preference number: 4 (lower is better)
Translates to: VDVVTGQDSRQDHQGRIHLEPSP*CLHRYL
Trigger: CAAATATCGATGCAGGCAGCAAGGAGATGGTTCGAG...ATGAATCCTTCCCTGGTGATCCTGTCTGGAGTCCTGGCCAGTCACTACATCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp AAGACAGCCACTGTTGGACTAGCTGAACCACAGCCTGTGAGCCATTCTGATAATTGGGGTGATGCTCGATaGCCTTCTTCCGCATCACTC +
Preference number: 4 (lower is better)
Translates to: KTATVGLAEPQPVSHSDNWGDAR*PSSASL
Trigger: GAGTGATGCGGAAGAAGGGCATCGAGCATCACCCCA...ATTATCAGAATGGCTCACAGGCTGTGGTTCAGCTAGTCCAACAGTGGCTGTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR CCA 90 bp TTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGACCTCTAACAATCGTGTaGAGCCTGGTGTTAATGTCA +
Preference number: 4 (lower is better)
Translates to: LYVCGEGYVHLSAAAPGRPLTIV*SLVLMS
Trigger: TGACATTAACACCAGGCTCCACACGATTGTTAGAGG...TCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR CCA 90 bp TCACAGCAGCAGAAGGTAACTGATACACTGGCACGTGTGGGTGCTTACTCCAGGACGGAGTTCCATTCCTaGATCAGCTTGGTTGAATGC +
Preference number: 4 (lower is better)
Translates to: SQQQKVTDTLARVGAYSRTEFHS*ISLVEC
Trigger: GCATTCAACCAAGCTGATCCAGGAATGGAACTCCGT...CCTGGAGTAAGCACCCACACGTGCCAGTGTATCAGTTACCTTCTGCTGCTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR CCA 90 bp AACACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCTGTGGATGTAGTGACTaGCCAGGACTCCAGACAGGA +
Preference number: 4 (lower is better)
Translates to: NTDLEEHGSTLSSSRVSVCGCSD*PGLQTG
Trigger: TCCTGTCTGGAGTCCTGGCCAGTCACTACATCCACA...GACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp AAGTACAAGGAAGAAGGAAGCAATTGCTATTGCCTGGTGGCCCTTGCTTTCCATGAGGACAAGGCTTGCTaGCGGATGACGTCCTTCACG +
Preference number: 4 (lower is better)
Translates to: KYKEEGSNCYCLVALAFHEDKAC*RMTSFT
Trigger: CGTGAAGGACGTCATCCGCCAGCAAGCCTTGTCCTC...ATGGAAAGCAAGGGCCACCAGGCAATAGCAATTGCTTCCTTCTTCCTTGTACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR TCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTTTCGTCTTTTGGTACTaGCATCCCTTCCACCAAGAG +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRFVFWY*HPFHQE
Trigger: CTCTTGGTGGAAGGGATGTCAGTACCAAAAGACGAA...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp GTGGATGTAGTGACTGGCCAGGACTCCAGACAGGATCACCAGGGAAGGATTCATCTTCAATGTGAAGGATaGGGATGTTCATCAAGGCAG +
Preference number: 4 (lower is better)
Translates to: VDVVTGQDSRQDHQGRIHLQCEG*GCSSRQ
Trigger: CTGCCTTGATGAACATCCGCATCCTTCACATTGAAG...ATGAATCCTTCCCTGGTGATCCTGTCTGGAGTCCTGGCCAGTCACTACATCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp GATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCGAACCATCTCCTTGCTaGCTGCATCGATATTTGGAA +
Preference number: 4 (lower is better)
Translates to: DLEEHGSTLSSSRVSVRVEPSPC*LHRYLE
Trigger: TTCCAAATATCGATGCAGGCAGCAAGGAGATGGTTC...GACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCTGGAGGTGTAGTGCTTaGAATATTTTATCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSWRCSA*NILSWV
Trigger: CACCCAAGATAAAATATTGCAAGCACTACACCTCCA...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp GATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCATCATGGAGTTTCTTTaGTTCCCTCTGCAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: DLEEHGSTLSSSRVSVRVIMEFL*FPLQGH
Trigger: ATGGCCTTGCAGAGGGAAGCAAAGAAACTCCATGAT...GACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp AGCAATTGCTATTGCCTGGTGGCCCTTGCTTTCCATTCACGGTTATTAAAGCCTACTTCCTCTCTGCCATaGCGGCACAGTTGCCGTCAT +
Preference number: 4 (lower is better)
Translates to: SNCYCLVALAFHSRLLKPTSSLP*RHSCRH
Trigger: ATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGT...AGGCTTTAATAACCGTGAATGGAAAGCAAGGGCCACCAGGCAATAGCAATTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR CCA 90 bp TCACAGCAGCAGAAGGTAACTGATACACTGGCACGTGTGGGTGCTTACTCCAGGGAAGGATTCATAGTGTaGAGGATGTTCACAACCCCA +
Preference number: 4 (lower is better)
Translates to: SQQQKVTDTLARVGAYSREGFIV*RMFTTP
Trigger: TGGGGTTGTGAACATCCTCCACACTATGAATCCTTC...CCTGGAGTAAGCACCCACACGTGCCAGTGTATCAGTTACCTTCTGCTGCTGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR CCA 90 bp GATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCGAAGGATTCATAGTGTaGAGGATGTTCACAACCCCA +
Preference number: 4 (lower is better)
Translates to: DLEEHGSTLSSSRVSVRVEGFIV*RMFTTP
Trigger: TGGGGTTGTGAACATCCTCCACACTATGAATCCTTC...GACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
3UTR CAA 72 bp CTATTTGCATTCACTTCTGCTGCTGTTGGCTTGTCGTaGAAGATGTGGTTTCTCAAGCTCCCTGCCCTGGCT +
Preference number: 4 (lower is better)
Translates to: LFAFTSAAVGLS*KMWFLKLPALA
Trigger: AGCCAGGGCAGGGAGCTTGAGAAACCACATCTTCAACGACAAGCCAACAGCAGCAGAAGTGAATGCAAATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR TCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTATCCCCATATATCTTTaGGCAAGGGTACTGTTTGCC +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRIPIYL*ARVLFA
Trigger: GGCAAACAGTACCCTTGCTCAAAGATATATGGGGAT...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp CTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTCATCTTGCTCAATCATaGGGTATGTGTTTCCATAGT +
Preference number: 4 (lower is better)
Translates to: LEEHGSTLSSSRVSVRVRHLAQS*GMCFHS
Trigger: ACTATGGAAACACATACCGCATGATTGAGCAAGATG...ACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp TTTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGCATCTTGCTCAATCATaGGGTATGTGTTTCCATAGT +
Preference number: 4 (lower is better)
Translates to: FVCVWRGVCTSECSCPRQHLAQS*GMCFHS
Trigger: ACTATGGAAACACATACCGCATGATTGAGCAAGATG...CTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTCTTCAATGTGAAGGATaGGGATGTTCATCAAGGCAG +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRLQCEG*GCSSRQ
Trigger: CTGCCTTGATGAACATCCGCATCCTTCACATTGAAG...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGAACCATCTCCTTGCTaGCTGCATCGATATTTGGAA +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVREPSPC*LHRYLE
Trigger: TTCCAAATATCGATGCAGGCAGCAAGGAGATGGTTC...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTCCTCTAACAATCGTGTaGAGCCTGGTGTTAATGTCA +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRPLTIV*SLVLMS
Trigger: TGACATTAACACCAGGCTCCACACGATTGTTAGAGG...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CCA 90 bp AACACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCAGCAGGTCCTCATCATaGAGTTTCTTTGCTTCCCTC +
Preference number: 4 (lower is better)
Translates to: NTDLEEHGSTLSSSRVSVSRSSS*SFFASL
Trigger: GAGGGAAGCAAAGAAACTCCATGATGAGGACCTGCT...GACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
3UTR CAA 72 bp GTCCATGAGTTTATGGGAGTCAGGAGTGGATGCAGTTaGAATGGGAATGTCTCTGTAGGCTCAGGTATGTCG +
Preference number: 4 (lower is better)
Translates to: VHEFMGVRSGCS*NGNVSVGSGMS
Trigger: CGACATACCTGAGCCTACAGAGACATTCCCATTCAAACTGCATCCACTCCTGACTCCCATAAACTCATGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CAA 72 bp TTCAAATACATGGCTCACAGCGTGGTAACAGTGCAGTaGTTTGGTTGCAGTGATTACAGGGTGACCCACTGG +
Preference number: 4 (lower is better)
Translates to: FKYMAHSVVTVQ*FGCSDYRVTHW
Trigger: CCAGTGGGTCACCCTGTAATCACTGCAACCAAACAACTGCACTGTTACCACGCTGTGAGCCATGTATTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR TCA 90 bp AGCAATTGCTATTGCCTGGTGGCCCTTGCTTTCCATTCACGGTTATTAAAGCCTTCGCCTCCTTCAATGTaGAGGATGCGGATGTTCATC +
Preference number: 4 (lower is better)
Translates to: SNCYCLVALAFHSRLLKPSPPSM*RMRMFI
Trigger: GATGAACATCCGCATCCTTCACATTGAAGGAGGCGA...AGGCTTTAATAACCGTGAATGGAAAGCAAGGGCCACCAGGCAATAGCAATTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR TCA 90 bp TTTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGGTTTTAGGGTTGAACTaGGTGTACTTCTTAACGATT +
Preference number: 4 (lower is better)
Translates to: FVCVWRGVCTSECSCPRQVLGLN*VYFLTI
Trigger: AATCGTTAAGAAGTACACTCAGTTCAACCCTAAAAC...CTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR TCA 90 bp AAGACAGCCACTGTTGGACTAGCTGAACCACAGCCTGTGAGCCATTCTGATAATTTCGTCTTTTGGTACTaGCATCCCTTCCACCAAGAG +
Preference number: 4 (lower is better)
Translates to: KTATVGLAEPQPVSHSDNFVFWY*HPFHQE
Trigger: CTCTTGGTGGAAGGGATGTCAGTACCAAAAGACGAA...ATTATCAGAATGGCTCACAGGCTGTGGTTCAGCTAGTCCAACAGTGGCTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR GCA 90 bp TTTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGAACATCTTTATGGAATaGTTAATGTCAGTGGTCACG +
Preference number: 4 (lower is better)
Translates to: FVCVWRGVCTSECSCPRQNIFME*LMSVVT
Trigger: CGTGACCACTGACATTAAGCATTCCATAAAGATGTT...CTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp AGGACTAGTAAACTAAGCCTTCCCATGATGCTAGCTAGCATCCCGAGGTCTATGGTTTCTCTTCCTATCTaGCTTGTGCCCAGGTTGATC +
Preference number: 4 (lower is better)
Translates to: RTSKLSLPMMLASIPRSMVSLPI*LVPRLI
Trigger: GATCAACCTGGGCACAAGGCAGATAGGAAGAGAAAC...CATAGACCTCGGGATGCTAGCTAGCATCATGGGAAGGCTTAGTTTACTAGTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR CCA 90 bp AACACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCATTCCTGGATCAGCTTaGTTGAATGCAGCACAACTC +
Preference number: 4 (lower is better)
Translates to: NTDLEEHGSTLSSSRVSVIPGSA*LNAAQL
Trigger: GAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAAT...GACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR GCA 90 bp GTGGATGTAGTGACTGGCCAGGACTCCAGACAGGATCACCAGGGAAGGATTCATAACATCTTTATGGAATaGTTAATGTCAGTGGTCACG +
Preference number: 4 (lower is better)
Translates to: VDVVTGQDSRQDHQGRIHNIFME*LMSVVT
Trigger: CGTGACCACTGACATTAAGCATTCCATAAAGATGTT...ATGAATCCTTCCCTGGTGATCCTGTCTGGAGTCCTGGCCAGTCACTACATCCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR GCA 90 bp GATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCAACATCTTTATGGAATaGTTAATGTCAGTGGTCACG +
Preference number: 4 (lower is better)
Translates to: DLEEHGSTLSSSRVSVRVNIFME*LMSVVT
Trigger: CGTGACCACTGACATTAAGCATTCCATAAAGATGTT...GACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp TCACAGCAGCAGAAGGTAACTGATACACTGGCACGTGTGGGTGCTTACTCCAGGTTCTTCTCCATGACTTaGTTCTTTTTACTTGAGAGT +
Preference number: 4 (lower is better)
Translates to: SQQQKVTDTLARVGAYSRFFSMT*FFLLES
Trigger: ACTCTCAAGTAAAAAGAAGCAAGTCATGGAGAAGAA...CCTGGAGTAAGCACCCACACGTGCCAGTGTATCAGTTACCTTCTGCTGCTGTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR GCA 90 bp AACACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCATCTTGCTCAATCATaGGGTATGTGTTTCCATAGT +
Preference number: 4 (lower is better)
Translates to: NTDLEEHGSTLSSSRVSVHLAQS*GMCFHS
Trigger: ACTATGGAAACACATACCGCATGATTGAGCAAGATG...GACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp AACACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCATGTCAAAGTCATCTTaGTCAATCATGCGGTATGTG +
Preference number: 4 (lower is better)
Translates to: NTDLEEHGSTLSSSRVSVMSKSS*SIMRYV
Trigger: CACATACCGCATGATTGAGCAAGATGACTTTGACAT...GACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTAACATCTTTATGGAATaGTTAATGTCAGTGGTCACG +
Preference number: 4 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRNIFME*LMSVVT
Trigger: CGTGACCACTGACATTAAGCATTCCATAAAGATGTT...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp AAATTAGATAATGATAAAGCAGGGCCACAAATACAGAGCTCTTTTGGGAAAAGACCGCGCAGAAGGAGCTaGCGTGGATCAGTTCGTGCT +
Preference number: 4 (lower is better)
Translates to: KLDNDKAGPQIQSSFGKRPRRRS*RGSVRA
Trigger: AGCACGAACTGATCCACGGCAGCTCCTTCTGCGCGG...TCTTTTCCCAAAAGAGCTCTGTATTTGTGGCCCTGCTTTATCATTATCTAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR CCA 90 bp AACACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCTATAGTCTTTGTTCTTaGCGGAGAGCAGTTTGTCAT +
Preference number: 4 (lower is better)
Translates to: NTDLEEHGSTLSSSRVSVYSLCS*RRAVCH
Trigger: ATGACAAACTGCTCTCCGCCAAGAACAAAGACTATA...GACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
3UTR CAA 72 bp CTTCATGCCCCTATTCCCATGCTTCCACTGCTCTCTTaGGAAGCAAAATGTATACTCTGCCATTGTGGGTTT +
Preference number: 4 (lower is better)
Translates to: LHAPIPMLPLLS*EAKCILCHCGF
Trigger: AAACCCACAATGGCAGAGTATACATTTTGCTTCCAAAGAGAGCAGTGGAAGCATGGGAATAGGGGCATGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CAA 72 bp CCTGCATCGATATTTGGAAACAGAACTAGGGTCCTCTaGTTAAACGAGATCAGGGCATCCAGTGTTAGCTCA +
Preference number: 4 (lower is better)
Translates to: PASIFGNRTRVL*LNEIRASSVSS
Trigger: TGAGCTAACACTGGATGCCCTGATCTCGTTTAACAAGAGGACCCTAGTTCTGTTTCCAAATATCGATGCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133709.8
CDS-3UTR TCA 90 bp AACACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCGTTTTAGGGTTGAACTaGGTGTACTTCTTAACGATT +
Preference number: 4 (lower is better)
Translates to: NTDLEEHGSTLSSSRVSVVLGLN*VYFLTI
Trigger: AATCGTTAAGAAGTACACTCAGTTCAACCCTAAAAC...GACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR GCA 90 bp AAGACAGCCACTGTTGGACTAGCTGAACCACAGCCTGTGAGCCATTCTGATAATATGTCAAAGTCATCTTaGTCAATCATGCGGTATGTG +
Preference number: 4 (lower is better)
Translates to: KTATVGLAEPQPVSHSDNMSKSS*SIMRYV
Trigger: CACATACCGCATGATTGAGCAAGATGACTTTGACAT...ATTATCAGAATGGCTCACAGGCTGTGGTTCAGCTAGTCCAACAGTGGCTGTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR GCA 90 bp AAATTAGATAATGATAAAGCAGGGCCACAAATACAGAGCTCTTTTGGGAAAAGAAGGCGTACGCTTCGATaGACCCATGGCTTCCACAGG +
Preference number: 4 (lower is better)
Translates to: KLDNDKAGPQIQSSFGKRRRTLR*THGFHR
Trigger: CCTGTGGAAGCCATGGGTGCATCGAAGCGTACGCCT...TCTTTTCCCAAAAGAGCTCTGTATTTGTGGCCCTGCTTTATCATTATCTAATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR CCA 90 bp AAATTAGATAATGATAAAGCAGGGCCACAAATACAGAGCTCTTTTGGGAAAAGAAGCACAACTCCTTCCTaGGGATTCACGCGGCCACCT +
Preference number: 4 (lower is better)
Translates to: KLDNDKAGPQIQSSFGKRSTTPS*GFTRPP
Trigger: AGGTGGCCGCGTGAATCCCCAGGAAGGAGTTGTGCT...TCTTTTCCCAAAAGAGCTCTGTATTTGTGGCCCTGCTTTATCATTATCTAATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CAA 72 bp TTCCCATCCCCATATATCTTTGAGCAAGGGTACTGTTaGCCGAACTGGAGGTGTAGTGCTTGCAATATTTTA +
Preference number: 4 (lower is better)
Translates to: FPSPYIFEQGYC*PNWRCSACNIL
Trigger: TAAAATATTGCAAGCACTACACCTCCAGTTCGGCAAACAGTACCCTTGCTCAAAGATATATGGGGATGGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
CDS-3UTR TCA 90 bp AGCAATTGCTATTGCCTGGTGGCCCTTGCTTTCCATTCACGGTTATTAAAGCCTGTTTTAGGGTTGAACTaGGTGTACTTCTTAACGATT +
Preference number: 4 (lower is better)
Translates to: SNCYCLVALAFHSRLLKPVLGLN*VYFLTI
Trigger: AATCGTTAAGAAGTACACTCAGTTCAACCCTAAAAC...AGGCTTTAATAACCGTGAATGGAAAGCAAGGGCCACCAGGCAATAGCAATTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
3UTR CAA 72 bp GTACAGTCGGTAGGCAGAACTGAGGACTTTTATATTTaGTCATCCAAGAAAAAGCAGATGTTAAGCTGGGTG +
Preference number: 4 (lower is better)
Translates to: VQSVGRTEDFYI*SSKKKQMLSWV
Trigger: CACCCAGCTTAACATCTGCTTTTTCTTGGATGACAAAATATAAAAGTCCTCAGTTCTGCCTACCGACTGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR TCA 90 bp AAATTAGATAATGATAAAGCAGGGCCACAAATACAGAGCTCTTTTGGGAAAAGAATCCCCATATATCTTTaGGCAAGGGTACTGTTTGCC +
Preference number: 4 (lower is better)
Translates to: KLDNDKAGPQIQSSFGKRIPIYL*ARVLFA
Trigger: GGCAAACAGTACCCTTGCTCAAAGATATATGGGGAT...TCTTTTCCCAAAAGAGCTCTGTATTTGTGGCCCTGCTTTATCATTATCTAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR GCA 90 bp GGGGAAAGTGGATTTGAAAGGTGTGATACTATTCTTGGTTGTCAACTTGATTACGCTTCCACACACATCTaGAGGATTAAACTAATCCTT +
Preference number: 4 (lower is better)
Translates to: GESGFERCDTILGCQLDYASTHI*RIKLIL
Trigger: AAGGATTAGTTTAATCCTGCAGATGTGTGTGGAAGC...GTAATCAAGTTGACAACCAAGAATAGTATCACACCTTTCAAATCCACTTTCCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR GCA 90 bp AAATTAGATAATGATAAAGCAGGGCCACAAATACAGAGCTCTTTTGGGAAAAGATGGAGGTGTAGTGCTTaGAATATTTTATCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: KLDNDKAGPQIQSSFGKRWRCSA*NILSWV
Trigger: CACCCAAGATAAAATATTGCAAGCACTACACCTCCA...TCTTTTCCCAAAAGAGCTCTGTATTTGTGGCCCTGCTTTATCATTATCTAATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR CAA 90 bp CCCCCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCGCACAGTTGCCGTCATaGTCCACCCACACGGGGAGA +
Preference number: 5 (lower is better)
Translates to: PPAERHWVPWSLASRQLSAQLPS*STHTGR
Trigger: TCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGC...GCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGGGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CAA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGTCGGGCTTCAGGCGATaGAGGACGTCCGGTAGCTTC +
Preference number: 5 (lower is better)
Translates to: AERHWVPWSLASRQLSCLSGFRR*RTSGSF
Trigger: GAAGCTACCGGACGTCCTCAATCGCCTGAAGCCCGA...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR CAA 90 bp CCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCTTGCCACCCTCAGGTTaGTCCCGCCAAGATCAACAG +
Preference number: 5 (lower is better)
Translates to: PAERHWVPWSLASRQLSCLPPSG*SRQDQQ
Trigger: CTGTTGATCTTGGCGGGACAAACCTGAGGGTGGCAA...GCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR CAA 90 bp ATGGCCGAGCTCCGCCGCGCAGAAGGAGCTGCCGTGGATCAGTTCGTGCTGGTGTTGCCACCCTCAGGTTaGTCCCGCCAAGATCAACAG +
Preference number: 5 (lower is better)
Translates to: MAELRRAEGAAVDQFVLVLPPSG*SRQDQQ
Trigger: CTGTTGATCTTGGCGGGACAAACCTGAGGGTGGCAA...CACCAGCACGAACTGATCCACGGCAGCTCCTTCTGCGCGGCGGAGCTCGGCCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR CAA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGACCCGGAGCTTTCGGTaGTTCCCGTTCTTCTCCATG +
Preference number: 5 (lower is better)
Translates to: AERHWVPWSLASRQLSCLTRSFR*FPFFSM
Trigger: CATGGAGAAGAACGGGAACAACCGAAAGCTCCGGGT...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR CAA 90 bp GCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGACACGGAGGACAAGGCTaGCTGGCGGATGACGTCCTT +
Preference number: 5 (lower is better)
Translates to: AWFHSKQLPSLCPCPFPGHGGQG*LADDVL
Trigger: AAGGACGTCATCCGCCAGCAAGCCTTGTCCTCCGTG...TCCCGGGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp CCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCATCATGGAGTTTCTTaGCTTCCCTCTGCAAGGCCA +
Preference number: 5 (lower is better)
Translates to: PAERHWVPWSLASRQLSCHHGVS*LPSARP
Trigger: TGGCCTTGCAGAGGGAAGCAAAGAAACTCCATGATG...GCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CAA 90 bp GGACCGTCCAGGGACACCACGAGATGGCCGAGCTCCGCCGCGCAGAAGGAGCTGTTGCTGCATCGATATTaGGAAACAGAACTAGGGTCC +
Preference number: 5 (lower is better)
Translates to: GPSRDTTRWPSSAAQKELLLHRY*ETELGS
Trigger: GGACCCTAGTTCTGTTTCCAAATATCGATGCAGCAA...CAGCTCCTTCTGCGCGGCGGAGCTCGGCCATCTCGTGGTGTCCCTGGACGGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
CDS-3UTR CAA 90 bp GCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGATTGCCACCCTCAGGTTaGTCCCGCCAAGATCAACAG +
Preference number: 5 (lower is better)
Translates to: AWFHSKQLPSLCPCPFPGLPPSG*SRQDQQ
Trigger: CTGTTGATCTTGGCGGGACAAACCTGAGGGTGGCAA...TCCCGGGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGCCTGGATCAGCTTGGTaGAATGCAGCACAACTCCTT +
Preference number: 5 (lower is better)
Translates to: AERHWVPWSLASRQLSCLPGSAW*NAAQLL
Trigger: AAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGG...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CAA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGCCACAGCTTCGTCTTTaGGTACTGACATCCCTTCCA +
Preference number: 5 (lower is better)
Translates to: AERHWVPWSLASRQLSCLPQLRL*VLTSLP
Trigger: TGGAAGGGATGTCAGTACCAAAAGACGAAGCTGTGG...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CAA 90 bp TATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGAGAGCACGGAGGACAAGGCTaGCTGGCGGATGACGTCCTT +
Preference number: 5 (lower is better)
Translates to: YVCGEGYVHLSAAAPGREHGGQG*LADDVL
Trigger: AAGGACGTCATCCGCCAGCAAGCCTTGTCCTCCGTG...CTCTCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CAA 90 bp GCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGAAGTGGATCCTGCGCGTaGTGTAGTCCAGAACCATGC +
Preference number: 5 (lower is better)
Translates to: AWFHSKQLPSLCPCPFPGSGSCA*CSPEPC
Trigger: GCATGGTTCTGGACTACACAACGCGCAGGATCCACT...TCCCGGGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp GGACCGTCCAGGGACACCACGAGATGGCCGAGCTCCGCCGCGCAGAAGGAGCTGAATGTCAAAGTCATCTaGCTCAATCATGCGGTATGT +
Preference number: 5 (lower is better)
Translates to: GPSRDTTRWPSSAAQKELNVKVI*LNHAVC
Trigger: ACATACCGCATGATTGAGCAAGATGACTTTGACATT...CAGCTCCTTCTGCGCGGCGGAGCTCGGCCATCTCGTGGTGTCCCTGGACGGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS TCA 90 bp AAGGCAGCAGACGTAGCCAGAGCAAGGGCGTCAAATCGGTCTCCGTaGACAATCATGATGTCGGGCTTCAGGCGATTGAGGACGTCCGGT +
Preference number: 5 (lower is better)
Translates to: KAADVARARASNRSP*TIMMSGFRRLRTSG
Trigger: ACCGGACGTCCTCAATCGCCTGAAGCCCGACATCATGATTGTTCACGGAGACCGATTTGACGCCCTTGCTCTGGCTACGTCTGCTGCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000144985.8
ENSMUST00000172533.8
ENSMUST00000173234.8
ENSMUST00000173274.2
ENSMUST00000173383.2
CDS-3UTR CAA 90 bp CCGGCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCGATGTGGTCAATGTCTaGAGAGATGTTCTCCTTTAC +
Preference number: 5 (lower is better)
Translates to: PAERHWVPWSLASRQLSCDVVNV*RDVLLY
Trigger: GTAAAGGAGAACATCTCTCAAGACATTGACCACATC...GCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGCCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR CAA 90 bp GCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGACCCAGAATTCTGCAATaGAGTTTCACAGCTTCCGCG +
Preference number: 5 (lower is better)
Translates to: AWFHSKQLPSLCPCPFPGPRILQ*SFTASA
Trigger: CGCGGAAGCTGTGAAACTCAATTGCAGAATTCTGGG...TCCCGGGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp GCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGACCTGGATCAGCTTGGTaGAATGCAGCACAACTCCTT +
Preference number: 5 (lower is better)
Translates to: AWFHSKQLPSLCPCPFPGPGSAW*NAAQLL
Trigger: AAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGG...TCCCGGGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CAA 90 bp TCACAGCAGCAGAAGGTAACTGATACACTGGCACGTGTGGGTGCTTACTCCAGGGCACAGTTGCCGTCATaGTCCACCCACACGGGGAGA +
Preference number: 5 (lower is better)
Translates to: SQQQKVTDTLARVGAYSRAQLPS*STHTGR
Trigger: TCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGC...CCTGGAGTAAGCACCCACACGTGCCAGTGTATCAGTTACCTTCTGCTGCTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS-3UTR CAA 90 bp GCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGACATCATGGAGTTTCTTaGCTTCCCTCTGCAAGGCCA +
Preference number: 5 (lower is better)
Translates to: AWFHSKQLPSLCPCPFPGHHGVS*LPSARP
Trigger: TGGCCTTGCAGAGGGAAGCAAAGAAACTCCATGATG...TCCCGGGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp TATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGAGAGAGTGGATCCTGCGCGTaGTGTAGTCCAGAACCATGC +
Preference number: 5 (lower is better)
Translates to: YVCGEGYVHLSAAAPGRESGSCA*CSPEPC
Trigger: GCATGGTTCTGGACTACACAACGCGCAGGATCCACT...CTCTCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS TCA 90 bp CGGCCACCTGTGGAGATGCCTGAGCTACTCCCAGAATTCTGCAATTaGGTTTCACAGCTTCCGCGGCAGCTTCCACACACATCTGCAGGA +
Preference number: 5 (lower is better)
Translates to: RPPVEMPELLPEFCN*VSQLPRQLPHTSAG
Trigger: TCCTGCAGATGTGTGTGGAAGCTGCCGCGGAAGCTGTGAAACTCAATTGCAGAATTCTGGGAGTAGCTCAGGCATCTCCACAGGTGGCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS GCA 90 bp GTCTTTGTTCTTGGCGGAGAGCAGTTTGTCATAGGAAGGGCAGCCTaGCAACAGGATGCGGTCGTGGTCCTCGCACATAGAGATCAGGTG +
Preference number: 5 (lower is better)
Translates to: VFVLGGEQFVIGRAA*QQDAVVVLAHRDQV
Trigger: CACCTGATCTCTATGTGCGAGGACCACGACCGCATCCTGTTGGCAGGCTGCCCTTCCTATGACAAACTGCTCTCCGCCAAGAACAAAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
ENSMUST00000173274.2
CDS-3UTR CAA 90 bp TTCCTCTCTGCCATGGCGGCACAGTTGCCGTCATTGTCCACCCACACGGGGAGAACTCGAACCATCTCCTaGCTGCCTGCATCGATATTT +
Preference number: 5 (lower is better)
Translates to: FLSAMAAQLPSLSTHTGRTRTIS*LPASIF
Trigger: AAATATCGATGCAGGCAGCAAGGAGATGGTTCGAGT...TCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR CAA 90 bp GCAGAGAGGCATTGGGTCCCCTGGAGCTTGGCTTCCAGGCAGCTGAGCTGCCTGGAAACTTTAAAATCCTaGGAACAGCATTCCCATCCC +
Preference number: 5 (lower is better)
Translates to: AERHWVPWSLASRQLSCLETLKS*EQHSHP
Trigger: GGGATGGGAATGCTGTTCCAAGGATTTTAAAGTTTC...CAGGCAGCTCAGCTGCCTGGAAGCCAAGCTCCAGGGGACCCAATGCCTCTCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR CAA 90 bp GCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGACATTCCTGGATCAGCTaGGTTGAATGCAGCACAACT +
Preference number: 5 (lower is better)
Translates to: AWFHSKQLPSLCPCPFPGHSWIS*VECSTT
Trigger: AGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATG...TCCCGGGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CAA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTCACGGAGGACAAGGCTaGCTGGCGGATGACGTCCTT +
Preference number: 5 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRHGGQG*LADDVL
Trigger: AAGGACGTCATCCGCCAGCAAGCCTTGTCCTCCGTG...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS TCA 90 bp CTGATAGAGTCATCAATGGTCCCGCTGACCTCGCCTCCTTCAATGTaGAGGATGCGGATGTTCATCAAGGCAGCAGACGTAGCCAGAGCA +
Preference number: 5 (lower is better)
Translates to: LIESSMVPLTSPPSM*RMRMFIKAADVARA
Trigger: TGCTCTGGCTACGTCTGCTGCCTTGATGAACATCCGCATCCTTCACATTGAAGGAGGCGAGGTCAGCGGGACCATTGATGACTCTATCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000144985.8
ENSMUST00000172533.8
ENSMUST00000173234.8
ENSMUST00000173274.2
CDS-3UTR CAA 90 bp TATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGAGAGACTCGAACCATCTCCTaGCTGCCTGCATCGATATTT +
Preference number: 5 (lower is better)
Translates to: YVCGEGYVHLSAAAPGRETRTIS*LPASIF
Trigger: AAATATCGATGCAGGCAGCAAGGAGATGGTTCGAGT...CTCTCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR CAA 90 bp GAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCACTCGAACCATCTCCTaGCTGCCTGCATCGATATTT +
Preference number: 5 (lower is better)
Translates to: EEHGSTLSSSRVSVRVRSTRTIS*LPASIF
Trigger: AAATATCGATGCAGGCAGCAAGGAGATGGTTCGAGT...GGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp TTTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGCCACAGCTTCGTCTTTaGGTACTGACATCCCTTCCA +
Preference number: 5 (lower is better)
Translates to: FVCVWRGVCTSECSCPRQPQLRL*VLTSLP
Trigger: TGGAAGGGATGTCAGTACCAAAAGACGAAGCTGTGG...CTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
CDS-3UTR CAA 90 bp CTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTCCACAGCTTCGTCTTTaGGTACTGACATCCCTTCCA +
Preference number: 5 (lower is better)
Translates to: LEEHGSTLSSSRVSVRVRPQLRL*VLTSLP
Trigger: TGGAAGGGATGTCAGTACCAAAAGACGAAGCTGTGG...ACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTAGTGGATCCTGCGCGTaGTGTAGTCCAGAACCATGC +
Preference number: 5 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRSGSCA*CSPEPC
Trigger: GCATGGTTCTGGACTACACAACGCGCAGGATCCACT...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS GCA 90 bp CAGGATGCGGTCGTGGTCCTCGCACATAGAGATCAGGTGCTGCTCTaGACTTCTAGTGCAGCACACATGGTAGTGAGCCAGTTTTGTTAT +
Preference number: 5 (lower is better)
Translates to: QDAVVVLAHRDQVLL*TSSAAHMVVSQFCY
Trigger: ATAACAAAACTGGCTCACTACCATGTGTGCTGCACTAGAAGTGCAGAGCAGCACCTGATCTCTATGTGCGAGGACCACGACCGCATCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
ENSMUST00000173274.2
CDS-3UTR CAA 90 bp GCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTTCCCGGGAAATGTCAAAGTCATCTaGCTCAATCATGCGGTATGT +
Preference number: 5 (lower is better)
Translates to: AWFHSKQLPSLCPCPFPGNVKVI*LNHAVC
Trigger: ACATACCGCATGATTGAGCAAGATGACTTTGACATT...TCCCGGGAACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp AACACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCTTGCCACCCTCAGGTTaGTCCCGCCAAGATCAACAG +
Preference number: 5 (lower is better)
Translates to: NTDLEEHGSTLSSSRVSVLPPSG*SRQDQQ
Trigger: CTGTTGATCTTGGCGGGACAAACCTGAGGGTGGCAA...GACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp GATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCATCATGGAGTTTCTTaGCTTCCCTCTGCAAGGCCA +
Preference number: 5 (lower is better)
Translates to: DLEEHGSTLSSSRVSVRVHHGVS*LPSARP
Trigger: TGGCCTTGCAGAGGGAAGCAAAGAAACTCCATGATG...GACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp GATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCACTCGAACCATCTCCTaGCTGCCTGCATCGATATTT +
Preference number: 5 (lower is better)
Translates to: DLEEHGSTLSSSRVSVRVTRTIS*LPASIF
Trigger: AAATATCGATGCAGGCAGCAAGGAGATGGTTCGAGT...GACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp TTTCCTTGGCCGAACTTCCTCTCTGCCATGGCGGCACAGTTGCCGTCATTGTCCGAAACTTTAAAATCCTaGGAACAGCATTCCCATCCC +
Preference number: 5 (lower is better)
Translates to: FPWPNFLSAMAAQLPSLSETLKS*EQHSHP
Trigger: GGGATGGGAATGCTGTTCCAAGGATTTTAAAGTTTC...GGACAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGTTCGGCCAAGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR CAA 90 bp TATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGAGAGGATGTGGTCAATGTCTaGAGAGATGTTCTCCTTTAC +
Preference number: 5 (lower is better)
Translates to: YVCGEGYVHLSAAAPGREDVVNV*RDVLLY
Trigger: GTAAAGGAGAACATCTCTCAAGACATTGACCACATC...CTCTCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR CAA 90 bp GAGTTCCATTCCTGGATCAGCTTGGTTGAATGCAGCACAACTCCTTCCTGGGGACCCAGAATTCTGCAATaGAGTTTCACAGCTTCCGCG +
Preference number: 5 (lower is better)
Translates to: EFHSWISLVECSTTPSWGPRILQ*SFTASA
Trigger: CGCGGAAGCTGTGAAACTCAATTGCAGAATTCTGGG...TCCCCAGGAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATGGAACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR CAA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTCCCAGAATTCTGCAATaGAGTTTCACAGCTTCCGCG +
Preference number: 5 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRPRILQ*SFTASA
Trigger: CGCGGAAGCTGTGAAACTCAATTGCAGAATTCTGGG...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS CCA 90 bp ACCGACTCTACCATGGCCGCTTCATCTTCCCCTCTAACAATCGTGTaGAGCCTGGTGTTAATGTCAAAGTCATCTTGCTCAATCATGCGG +
Preference number: 5 (lower is better)
Translates to: TDSTMAASSSPLTIV*SLVLMSKSSCSIMR
Trigger: CCGCATGATTGAGCAAGATGACTTTGACATTAACACCAGGCTCCACACGATTGTTAGAGGGGAAGATGAAGCGGCCATGGTAGAGTCGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000128439.8
ENSMUST00000140724.3
ENSMUST00000144985.8
ENSMUST00000172533.8
ENSMUST00000173234.8
ENSMUST00000173274.2
ENSMUST00000173383.2
CDS-3UTR CAA 90 bp TTGTATGTGTGTGGAGAGGGGTATGTACATCTGAGTGCAGCTGCCCCCGGCAGATTGCAATATTTTATCTaGGGTGTCAGCATCCCTGAC +
Preference number: 5 (lower is better)
Translates to: LYVCGEGYVHLSAAAPGRLQYFI*GVSIPD
Trigger: GTCAGGGATGCTGACACCCAAGATAAAATATTGCAA...TCTGCCGGGGGCAGCTGCACTCAGATGTACATACCCCTCTCCACACACATACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
CDS-3UTR CAA 90 bp CTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTGTCCGTGATGTGGTCAATGTCTaGAGAGATGTTCTCCTTTAC +
Preference number: 5 (lower is better)
Translates to: LEEHGSTLSSSRVSVRVRDVVNV*RDVLLY
Trigger: GTAAAGGAGAACATCTCTCAAGACATTGACCACATC...ACGGACACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp GTGGATGTAGTGACTGGCCAGGACTCCAGACAGGATCACCAGGGAAGGATTCATTTGCAATATTTTATCTaGGGTGTCAGCATCCCTGAC +
Preference number: 5 (lower is better)
Translates to: VDVVTGQDSRQDHQGRIHLQYFI*GVSIPD
Trigger: GTCAGGGATGCTGACACCCAAGATAAAATATTGCAA...ATGAATCCTTCCCTGGTGATCCTGTCTGGAGTCCTGGCCAGTCACTACATCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR CAA 90 bp ACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCCGTTTGCAATATTTTATCTaGGGTGTCAGCATCCCTGAC +
Preference number: 5 (lower is better)
Translates to: TDLEEHGSTLSSSRVSVRLQYFI*GVSIPD
Trigger: GTCAGGGATGCTGACACCCAAGATAAAATATTGCAA...ACGGACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp GAGTTCCATTCCTGGATCAGCTTGGTTGAATGCAGCACAACTCCTTCCTGGGGAGATGTGGTCAATGTCTaGAGAGATGTTCTCCTTTAC +
Preference number: 5 (lower is better)
Translates to: EFHSWISLVECSTTPSWGDVVNV*RDVLLY
Trigger: GTAAAGGAGAACATCTCTCAAGACATTGACCACATC...TCCCCAGGAAGGAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATGGAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS-3UTR CAA 90 bp AACACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCGAAACTTTAAAATCCTaGGAACAGCATTCCCATCCC +
Preference number: 5 (lower is better)
Translates to: NTDLEEHGSTLSSSRVSVETLKS*EQHSHP
Trigger: GGGATGGGAATGCTGTTCCAAGGATTTTAAAGTTTC...GACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp AACACTGATCTAGAAGAGCATGGTTCCACTCTAAGCAGCTCCCGAGTCTCTGTCAATGTCAAAGTCATCTaGCTCAATCATGCGGTATGT +
Preference number: 5 (lower is better)
Translates to: NTDLEEHGSTLSSSRVSVNVKVI*LNHAVC
Trigger: ACATACCGCATGATTGAGCAAGATGACTTTGACATT...GACAGAGACTCGGGAGCTGCTTAGAGTGGAACCATGCTCTTCTAGATCAGTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
CDS-3UTR CAA 90 bp AAGTACAAGGAAGAAGGAAGCAATTGCTATTGCCTGGTGGCCCTTGCTTTCCATGAAACTTTAAAATCCTaGGAACAGCATTCCCATCCC +
Preference number: 5 (lower is better)
Translates to: KYKEEGSNCYCLVALAFHETLKS*EQHSHP
Trigger: GGGATGGGAATGCTGTTCCAAGGATTTTAAAGTTTC...ATGGAAAGCAAGGGCCACCAGGCAATAGCAATTGCTTCCTTCTTCCTTGTACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030201.14
CDS CCA 72 bp TCGGGGCCAGTTTGGAGTAGTCAGCTCGGTTGCAGGTaGCAACGCAAACCCGGAGCTTTCGGTTGTTCCCGT +
Preference number: 6 (lower is better)
Translates to: SGPVWSSQLGCR*QRKPGAFGCSR
Trigger: ACGGGAACAACCGAAAGCTCCGGGTTTGCGTTGCCACCTGCAACCGAGCTGACTACTCCAAACTGGCCCCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000128439.8
ENSMUST00000133709.8
ENSMUST00000140724.3
ENSMUST00000144985.8
ENSMUST00000172533.8
ENSMUST00000173234.8
ENSMUST00000173274.2
ENSMUST00000173383.2
CDS GCA 72 bp CTTGGCGGAGAGCAGTTTGTCATAGGAAGGGCAGCCTaGCAACAGGATGCGGTCGTGGTCCTCGCACATAGA +
Preference number: 6 (lower is better)
Translates to: LGGEQFVIGRAA*QQDAVVVLAHR
Trigger: TCTATGTGCGAGGACCACGACCGCATCCTGTTGGCAGGCTGCCCTTCCTATGACAAACTGCTCTCCGCCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
ENSMUST00000173274.2
CDS TCA 72 bp GACGTAGCCAGAGCAAGGGCGTCAAATCGGTCTCCGTaGACAATCATGATGTCGGGCTTCAGGCGATTGAGG +
Preference number: 6 (lower is better)
Translates to: DVARARASNRSP*TIMMSGFRRLR
Trigger: CCTCAATCGCCTGAAGCCCGACATCATGATTGTTCACGGAGACCGATTTGACGCCCTTGCTCTGGCTACGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000144985.8
ENSMUST00000172533.8
ENSMUST00000173234.8
ENSMUST00000173274.2
ENSMUST00000173383.2
CDS GCA 72 bp GTCGTGGTCCTCGCACATAGAGATCAGGTGCTGCTCTaGACTTCTAGTGCAGCACACATGGTAGTGAGCCAG +
Preference number: 6 (lower is better)
Translates to: VVVLAHRDQVLL*TSSAAHMVVSQ
Trigger: CTGGCTCACTACCATGTGTGCTGCACTAGAAGTGCAGAGCAGCACCTGATCTCTATGTGCGAGGACCACGAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
ENSMUST00000173274.2
CDS TCA 72 bp TCATCAATGGTCCCGCTGACCTCGCCTCCTTCAATGTaGAGGATGCGGATGTTCATCAAGGCAGCAGACGTA +
Preference number: 6 (lower is better)
Translates to: SSMVPLTSPPSM*RMRMFIKAADV
Trigger: TACGTCTGCTGCCTTGATGAACATCCGCATCCTTCACATTGAAGGAGGCGAGGTCAGCGGGACCATTGATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000144985.8
ENSMUST00000172533.8
ENSMUST00000173234.8
ENSMUST00000173274.2
CDS TCA 72 bp GTGGAGATGCCTGAGCTACTCCCAGAATTCTGCAATTaGGTTTCACAGCTTCCGCGGCAGCTTCCACACACA +
Preference number: 6 (lower is better)
Translates to: VEMPELLPEFCN*VSQLPRQLPHT
Trigger: TGTGTGTGGAAGCTGCCGCGGAAGCTGTGAAACTCAATTGCAGAATTCTGGGAGTAGCTCAGGCATCTCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172533.8
CDS CAA 72 bp CGGTTGCAGGTGGCAACGCAAACCCGGAGCTTTCGGTaGTTCCCGTTCTTCTCCATGACTTGCTTCTTTTTA +
Preference number: 6 (lower is better)
Translates to: RLQVATQTRSFR*FPFFSMTCFFL
Trigger: TAAAAAGAAGCAAGTCATGGAGAAGAACGGGAACAACCGAAAGCTCCGGGTTTGCGTTGCCACCTGCAACCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000030201.14
ENSMUST00000128439.8
ENSMUST00000140724.3
ENSMUST00000144985.8
CDS CCA 72 bp ACCATGGCCGCTTCATCTTCCCCTCTAACAATCGTGTaGAGCCTGGTGTTAATGTCAAAGTCATCTTGCTCA +
Preference number: 6 (lower is better)
Translates to: TMAASSSPLTIV*SLVLMSKSSCS
Trigger: TGAGCAAGATGACTTTGACATTAACACCAGGCTCCACACGATTGTTAGAGGGGAAGATGAAGCGGCCATGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000128439.8
ENSMUST00000140724.3
ENSMUST00000144985.8
ENSMUST00000172533.8
ENSMUST00000173234.8
ENSMUST00000173274.2
ENSMUST00000173383.2
CDS CAA 90 bp CCCTCTAACAATCGTGTGGAGCCTGGTGTTAATGTCAAAGTCATCTaGCTCAATCATGCGGTATGTGTTTCCATAGTCGTCAATCAGGTG +
Preference number: 6 (lower is better)
Translates to: PSNNRVEPGVNVKVI*LNHAVCVSIVVNQV
Trigger: CACCTGATTGACGACTATGGAAACACATACCGCATGATTGAGCAAGATGACTTTGACATTAACACCAGGCTCCACACGATTGTTAGAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000128439.8
ENSMUST00000140724.3
ENSMUST00000144985.8
ENSMUST00000172533.8
ENSMUST00000173234.8
ENSMUST00000173274.2
ENSMUST00000173383.2
CDS CAA 72 bp GCTGCATCGATATTTGGAAACAGAACTAGGGTCCTCTaGTTAAACGAGATCAGGGCATCCAGTGTTAGCTCA +
Preference number: 6 (lower is better)
Translates to: AASIFGNRTRVL*LNEIRASSVSS
Trigger: TGAGCTAACACTGGATGCCCTGATCTCGTTTAACAAGAGGACCCTAGTTCTGTTTCCAAATATCGATGCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8
CDS TCA 72 bp CCTTACATTTTACATCATCGCCTAGCCACATCCGAATaGTGCTCATATAGTCTTTGTTCTTGGCGGAGAGCA +
Preference number: 6 (lower is better)
Translates to: PYILHHRLATSE*CSYSLCSWRRA
Trigger: TGCTCTCCGCCAAGAACAAAGACTATATGAGCATCATTCGGATGTGGCTAGGCGATGATGTAAAATGTAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000172533.8
ENSMUST00000173234.8
ENSMUST00000173274.2
CDS CAA 72 bp AATCGTGTGGAGCCTGGTGTTAATGTCAAAGTCATCTaGCTCAATCATGCGGTATGTGTTTCCATAGTCGTC +
Preference number: 6 (lower is better)
Translates to: NRVEPGVNVKVI*LNHAVCVSIVV
Trigger: GACGACTATGGAAACACATACCGCATGATTGAGCAAGATGACTTTGACATTAACACCAGGCTCCACACGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000030201.14
ENSMUST00000102936.9
ENSMUST00000128439.8
ENSMUST00000140724.3
ENSMUST00000144985.8
ENSMUST00000172533.8
ENSMUST00000173234.8
ENSMUST00000173274.2
ENSMUST00000173383.2
CDS CAA 90 bp CATCTCCTTGCTGCATCGATATTTGGAAACAGAACTAGGGTCCTCTaGTTAAACGAGATCAGGGCATCCAGTGTTAGCTCAAACATCTTT +
Preference number: 6 (lower is better)
Translates to: HLLAASIFGNRTRVL*LNEIRASSVSSNIF
Trigger: AAAGATGTTTGAGCTAACACTGGATGCCCTGATCTCGTTTAACAAGAGGACCCTAGTTCTGTTTCCAAATATCGATGCAGCAAGGAGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174522.8