Pregenerated sensors for GML (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068349Ensembl transcript IDs: ENSMUST00000096400.10, ENSMUST00000164026.8, ENSMUST00000185253.2
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TATTTCTTTCCTACAAGAAATGATGAATGGGCCCAAAAGGTGCTCTaGACACTGTCTCTGCTTCACAAGGAAGCAACAAAGTACATAGGT | + |
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Preference number: 2 (lower is better) Translates to: YFFPTRNDEWAQKVL*TLSLLHKEATKYIG Trigger: ACCTATGTACTTTGTTGCTTCCTTGTGAAGCAGAGACAGTGTCAAGAGCACCTTTTGGGCCCATTCATCATTTCTTGTAGGAAAGAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS-3UTR CCA 90 bp | CTGTCTCTGCTTCACAAGGAAGCAACAAAGTACATAGGTGCTTTCAACTGTGGGCACCCTAGGGAGTTCTaGAGGCACATGCCTTCTATA | + |
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Preference number: 4 (lower is better) Translates to: LSLLHKEATKYIGAFNCGHPREF*RHMPSI Trigger: TATAGAAGGCATGTGCCTCCAGAACTCCCTAGGGTG...CCCACAGTTGAAAGCACCTATGTACTTTGTTGCTTCCTTGTGAAGCAGAGACAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS-3UTR TCA 90 bp | CTGTCTCTGCTTCACAAGGAAGCAACAAAGTACATAGGTGCTTTCAACTGTGGGGAGACCCATGAGAATTaGCAAGAAGAAGGGGAGCAT | + |
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Preference number: 4 (lower is better) Translates to: LSLLHKEATKYIGAFNCGETHEN*QEEGEH Trigger: ATGCTCCCCTTCTTCTTGTCAATTCTCATGGGTCTC...CCCACAGTTGAAAGCACCTATGTACTTTGTTGCTTCCTTGTGAAGCAGAGACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS-3UTR TCA 90 bp | AAAGGTGCTCTTGACACTGTCTCTGCTTCACAAGGAAGCAACAAAGTACATAGGCCCATGGGAGACCCATaGGAATTGACAAGAAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: KGALDTVSASQGSNKVHRPMGDP*ELTRRR Trigger: CCTTCTTCTTGTCAATTCTCATGGGTCTCCCATGGG...CCTATGTACTTTGTTGCTTCCTTGTGAAGCAGAGACAGTGTCAAGAGCACCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS-3UTR TCA 90 bp | CTGCTTCACAAGGAAGCAACAAAGTACATAGGTGCTTTCAACTGTGGGAAGATGGTTATGCTCCTGGCATaGATGGCATCTCATCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: LLHKEATKYIGAFNCGKMVMLLA*MASHLR Trigger: CCTCAGATGAGATGCCATTCATGCCAGGAGCATAAC...CATCTTCCCACAGTTGAAAGCACCTATGTACTTTGTTGCTTCCTTGTGAAGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS-3UTR TCA 90 bp | AAAGGTGCTCTTGACACTGTCTCTGCTTCACAAGGAAGCAACAAAGTACATAGGGTTATGCTCCTGGCATaGATGGCATCTCATCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: KGALDTVSASQGSNKVHRVMLLA*MASHLR Trigger: CCTCAGATGAGATGCCATTCATGCCAGGAGCATAAC...CCTATGTACTTTGTTGCTTCCTTGTGAAGCAGAGACAGTGTCAAGAGCACCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS-3UTR TCA 90 bp | CTGCTTCACAAGGAAGCAACAAAGTACATAGGTGCTTTCAACTGTGGGAAGATGGAGACCCATGAGAATTaGCAAGAAGAAGGGGAGCAT | + |
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Preference number: 4 (lower is better) Translates to: LLHKEATKYIGAFNCGKMETHEN*QEEGEH Trigger: ATGCTCCCCTTCTTCTTGTCAATTCTCATGGGTCTC...CATCTTCCCACAGTTGAAAGCACCTATGTACTTTGTTGCTTCCTTGTGAAGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS-3UTR CCA 90 bp | CTGTCTCTGCTTCACAAGGAAGCAACAAAGTACATAGGTGCTTTCAACTGTGGGAAGGTGTTATGCTCCTaGCATGAATGGCATCTCATC | + |
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Preference number: 4 (lower is better) Translates to: LSLLHKEATKYIGAFNCGKVLCS*HEWHLI Trigger: GATGAGATGCCATTCATGCCAGGAGCATAACACCTT...CCCACAGTTGAAAGCACCTATGTACTTTGTTGCTTCCTTGTGAAGCAGAGACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS-3UTR CCA 90 bp | CTGCTTCACAAGGAAGCAACAAAGTACATAGGTGCTTTCAACTGTGGGAAGATGCCCTCTCCATATTTCTaGGTCCTCCCTCATTGCAAA | + |
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Preference number: 4 (lower is better) Translates to: LLHKEATKYIGAFNCGKMPSPYF*VLPHCK Trigger: TTTGCAATGAGGGAGGACCCAGAAATATGGAGAGGG...CATCTTCCCACAGTTGAAAGCACCTATGTACTTTGTTGCTTCCTTGTGAAGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS-3UTR CCA 90 bp | CTGTCTCTGCTTCACAAGGAAGCAACAAAGTACATAGGTGCTTTCAACTGTGGGACAATAGTGGATATGTaGACAATAGAAGGTGTTATG | + |
|
Preference number: 4 (lower is better) Translates to: LSLLHKEATKYIGAFNCGTIVDM*TIEGVM Trigger: CATAACACCTTCTATTGTCCACATATCCACTATTGT...CCCACAGTTGAAAGCACCTATGTACTTTGTTGCTTCCTTGTGAAGCAGAGACAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS-3UTR CCA 90 bp | AAAGGTGCTCTTGACACTGTCTCTGCTTCACAAGGAAGCAACAAAGTACATAGGTTACCTCTTCCTCTATaGAAGTTTCACCTAACAAGT | + |
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Preference number: 4 (lower is better) Translates to: KGALDTVSASQGSNKVHRLPLPL*KFHLTS Trigger: ACTTGTTAGGTGAAACTTCCATAGAGGAAGAGGTAA...CCTATGTACTTTGTTGCTTCCTTGTGAAGCAGAGACAGTGTCAAGAGCACCTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS-3UTR CCA 90 bp | AAAGGTGCTCTTGACACTGTCTCTGCTTCACAAGGAAGCAACAAAGTACATAGGACAATAGTGGATATGTaGACAATAGAAGGTGTTATG | + |
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Preference number: 4 (lower is better) Translates to: KGALDTVSASQGSNKVHRTIVDM*TIEGVM Trigger: CATAACACCTTCTATTGTCCACATATCCACTATTGT...CCTATGTACTTTGTTGCTTCCTTGTGAAGCAGAGACAGTGTCAAGAGCACCTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS-3UTR CAA 90 bp | CTGCTTCACAAGGAAGCAACAAAGTACATAGGTGCTTTCAACTGTGGGAAGATGAGACAAAGGAGAAGGTaGACCCACCCCAGACTCACA | + |
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Preference number: 5 (lower is better) Translates to: LLHKEATKYIGAFNCGKMRQRRR*THPRLT Trigger: TGTGAGTCTGGGGTGGGTCAACCTTCTCCTTTGTCT...CATCTTCCCACAGTTGAAAGCACCTATGTACTTTGTTGCTTCCTTGTGAAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS-3UTR CAA 90 bp | AAAGGTGCTCTTGACACTGTCTCTGCTTCACAAGGAAGCAACAAAGTACATAGGAGACAAAGGAGAAGGTaGACCCACCCCAGACTCACA | + |
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Preference number: 5 (lower is better) Translates to: KGALDTVSASQGSNKVHRRQRRR*THPRLT Trigger: TGTGAGTCTGGGGTGGGTCAACCTTCTCCTTTGTCT...CCTATGTACTTTGTTGCTTCCTTGTGAAGCAGAGACAGTGTCAAGAGCACCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS CAA 72 bp | ATGCTGGAGAGGATCAAGGCAAGACAAAGGAGAAGGTaGACCCACCCCAGACTCACAGCTCTAGCAATTACC | + |
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Preference number: 6 (lower is better) Translates to: MLERIKARQRRR*THPRLTALAIT Trigger: GGTAATTGCTAGAGCTGTGAGTCTGGGGTGGGTCAACCTTCTCCTTTGTCTTGCCTTGATCCTCTCCAGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS CAA 90 bp | GTCAGTATGATGCTGGAGAGGATCAAGGCAAGACAAAGGAGAAGGTaGACCCACCCCAGACTCACAGCTCTAGCAATTACCTCTTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: VSMMLERIKARQRRR*THPRLTALAITSSS Trigger: AGAGGAAGAGGTAATTGCTAGAGCTGTGAGTCTGGGGTGGGTCAACCTTCTCCTTTGTCTTGCCTTGATCCTCTCCAGCATCATACTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS CCA 72 bp | TGGAAGTTTCACCTAACAAGTCCCTCTCCATATTTCTaGGTCCTCCCTCATTGCAAACGACACTCCCACAGC | + |
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Preference number: 6 (lower is better) Translates to: WKFHLTSPSPYF*VLPHCKRHSHS Trigger: GCTGTGGGAGTGTCGTTTGCAATGAGGGAGGACCCAGAAATATGGAGAGGGACTTGTTAGGTGAAACTTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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| CDS TCA 72 bp | GATATGTGGACAATAGAAGGTGTTATGCTCCTGGCATaGATGGCATCTCATCTGAGGAGTCCATCTAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: DMWTIEGVMLLA*MASHLRSPSRL Trigger: GAGCCTAGATGGACTCCTCAGATGAGATGCCATTCATGCCAGGAGCATAACACCTTCTATTGTCCACATATC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 ENSMUST00000185253.2 |
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| CDS CCA 72 bp | GAAGCTCTTGACATCTTTAAGCACCCTAGGGAGTTCTaGAGGCACATGCCTTCTATAAATAAATGTGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: EALDIFKHPREF*RHMPSINKCAV Trigger: GACTGCACATTTATTTATAGAAGGCATGTGCCTCCAGAACTCCCTAGGGTGCTTAAAGATGTCAAGAGCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096400.10 ENSMUST00000164026.8 |
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