RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GLOD4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017286

Ensembl transcript IDs: ENSMUST00000017430.12, ENSMUST00000164022.8, ENSMUST00000168055.2, ENSMUST00000169701.8, ENSMUST00000170017.8, ENSMUST00000170590.8, ENSMUST00000170710.8

Found 274 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACTCCATCCAGGCGAGAAGGCCCGTGCCAGGCCCATACCCTTCGTaGACCTGTGAGGTCCACTGGGCCTCAGAGAGCTTACAGATATCA +
Preference number: 1 (lower is better)
Translates to: HSIQARRPVPGPYPS*TCEVHWASESLQIS
Trigger: TGATATCTGTAAGCTCTCTGAGGCCCAGTGGACCTCACAGGTCCACGAAGGGTATGGGCCTGGCACGGGCCTTCTCGCCTGGATGGAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 90 bp CCAGGCGAGAAGGCCCGTGCCAGGCCCATACCCTTCGTGGACCTGTaGGGTCCACTGGGCCTCAGAGAGCTTACAGATATCAAAAAGGGT +
Preference number: 1 (lower is better)
Translates to: PGEKARARPIPFVDL*GPLGLRELTDIKKG
Trigger: ACCCTTTTTGATATCTGTAAGCTCTCTGAGGCCCAGTGGACCTCACAGGTCCACGAAGGGTATGGGCCTGGCACGGGCCTTCTCGCCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp AGGCCCGTGCCAGGCCCATACCCTTCGTGGACCTGTGAGGTCCACTaGGCCTCAGAGAGCTTACAGATATCAAAAAGGGTAGCTGGCACC +
Preference number: 1 (lower is better)
Translates to: RPVPGPYPSWTCEVH*ASESLQISKRVAGT
Trigger: GGTGCCAGCTACCCTTTTTGATATCTGTAAGCTCTCTGAGGCCCAGTGGACCTCACAGGTCCACGAAGGGTATGGGCCTGGCACGGGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 90 bp CAGAGGGAATGGGGAGCAGGTCTGCAGCCAATACTCTTCCAGGCCTaGATTGGCTTCGAGGGTCTGGATGAAGAGCTTCAGACTCAGGCC +
Preference number: 1 (lower is better)
Translates to: QREWGAGLQPILFQA*IGFEGLDEELQTQA
Trigger: GGCCTGAGTCTGAAGCTCTTCATCCAGACCCTCGAAGCCAATGCAGGCCTGGAAGAGTATTGGCTGCAGACCTGCTCCCCATTCCCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 90 bp CATCACCAGAAGGGAAAGCATCTGGTCAGAGATACTGCTGGAGACTaGACAGCACTCCATCCAGGCGAGAAGGCCCGTGCCAGGCCCATA +
Preference number: 1 (lower is better)
Translates to: HHQKGKHLVRDTAGD*TALHPGEKARARPI
Trigger: TATGGGCCTGGCACGGGCCTTCTCGCCTGGATGGAGTGCTGTTCAGTCTCCAGCAGTATCTCTGACCAGATGCTTTCCCTTCTGGTGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 90 bp TGCCCACATCCATCACCAGAAGGGAAAGCATCTGGTCAGAGATACTaGTGGAGACTGAACAGCACTCCATCCAGGCGAGAAGGCCCGTGC +
Preference number: 1 (lower is better)
Translates to: CPHPSPEGKASGQRY*WRLNSTPSRREGPC
Trigger: GCACGGGCCTTCTCGCCTGGATGGAGTGCTGTTCAGTCTCCAGCAGTATCTCTGACCAGATGCTTTCCCTTCTGGTGATGGATGTGGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp TCAAGGCCTCCACAATGGGCTGTCCCACGTGTTCCCAATCAGACTTaGTCAACTGTACCAGGGCTTTGGGGTGGAACAGCTGCTCAGCCA +
Preference number: 1 (lower is better)
Translates to: SRPPQWAVPRVPNQT*STVPGLWGGTAAQP
Trigger: TGGCTGAGCAGCTGTTCCACCCCAAAGCCCTGGTACAGTTGACCAAGTCTGATTGGGAACACGTGGGACAGCCCATTGTGGAGGCCTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp GAGCACCTCATCTGGCTCCAGAAGAGCAGCCACTGGAATCCCCTGTaGCTTCACAGGATTCGTCAGGCAGCTTACCAGCTCCAGAAACTG +
Preference number: 1 (lower is better)
Translates to: EHLIWLQKSSHWNPL*LHRIRQAAYQLQKL
Trigger: CAGTTTCTGGAGCTGGTAAGCTGCCTGACGAATCCTGTGAAGCCACAGGGGATTCCAGTGGCTGCTCTTCTGGAGCCAGATGAGGTGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp CCACATCCATCACCAGAAGGGAAAGCATCTGGTCAGAGATACTGCTaGAGACTGAACAGCACTCCATCCAGGCGAGAAGGCCCGTGCCAG +
Preference number: 1 (lower is better)
Translates to: PHPSPEGKASGQRYC*RLNSTPSRREGPCQ
Trigger: CTGGCACGGGCCTTCTCGCCTGGATGGAGTGCTGTTCAGTCTCCAGCAGTATCTCTGACCAGATGCTTTCCCTTCTGGTGATGGATGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 90 bp CACGGAGGCCACAGCTTTAGCCAGGCCCTGTTCAGAGGTACTCTGTaGGAGCTGGTTAAACGTCGTGTTGAGGTCTTCCTGAAAACCCTC +
Preference number: 1 (lower is better)
Translates to: HGGHSFSQALFRGTL*ELVKRRVEVFLKTL
Trigger: GAGGGTTTTCAGGAAGACCTCAACACGACGTTTAACCAGCTCGCACAGAGTACCTCTGAACAGGGCCTGGCTAAAGCTGTGGCCTCCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 90 bp AGTTCTTTAGTCTCAGGCCCACAGTCCAATCTAGCTGGTCTAATTTaGGGTGGAGCCAGGACAGGGACTTGGCCCAGGTGTCTGGGGAGA +
Preference number: 1 (lower is better)
Translates to: SSLVSGPQSNLAGLI*GGARTGTWPRCLGR
Trigger: TCTCCCCAGACACCTGGGCCAAGTCCCTGTCCTGGCTCCACCGCAAATTAGACCAGCTAGATTGGACTGTGGGCCTGAGACTAAAGAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 90 bp TTCTTGTCCTTGGGCCCAGGGACCCACCGACTGCATCAACCTGACTaGATCCAGGACACTGGTCAGACTGTTACAGAGGAGTTTGACCAC +
Preference number: 1 (lower is better)
Translates to: FLSLGPGTHRLHQPD*IQDTGQTVTEEFDH
Trigger: GTGGTCAAACTCCTCTGTAACAGTCTGACCAGTGTCCTGGATGCAGTCAGGTTGATGCAGTCGGTGGGTCCCTGGGCCCAAGGACAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp GTCCCACGTGTTCCCAATCAGACTTGGTCAACTGTACCAGGGCTTTaGGGTGGAACAGCTGCTCAGCCATCAAGAAGCCCCCATGCAGAA +
Preference number: 1 (lower is better)
Translates to: VPRVPNQTWSTVPGL*GGTAAQPSRSPHAE
Trigger: TTCTGCATGGGGGCTTCTTGATGGCTGAGCAGCTGTTCCACCCCAAAGCCCTGGTACAGTTGACCAAGTCTGATTGGGAACACGTGGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp CTACACATCTTCTTCACCACAACTTCTGGGTTCAGGATCACCAGGTaGGCCACGGAGGCCACAGCTTTAGCCAGGCCCTGTTCAGAGGTA +
Preference number: 1 (lower is better)
Translates to: LHIFFTTTSGFRITR*ATEATALARPCSEV
Trigger: TACCTCTGAACAGGGCCTGGCTAAAGCTGTGGCCTCCGTGGCCCACCTGGTGATCCTGAACCCAGAAGTTGTGGTGAAGAAGATGTGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp GACAAACTCCTTGAGCACCTCATCTGGCTCCAGAAGAGCAGCCACTaGAATCCCCTGTGGCTTCACAGGATTCGTCAGGCAGCTTACCAG +
Preference number: 1 (lower is better)
Translates to: DKLLEHLIWLQKSSH*NPLWLHRIRQAAYQ
Trigger: CTGGTAAGCTGCCTGACGAATCCTGTGAAGCCACAGGGGATTCCAGTGGCTGCTCTTCTGGAGCCAGATGAGGTGCTCAAGGAGTTTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 90 bp CCACCTCCTCCATGTCCAACATCAAGAAAGGCAGGACAAACTCCTTaGGCACCTCATCTGGCTCCAGAAGAGCAGCCACTGGAATCCCCT +
Preference number: 1 (lower is better)
Translates to: PPPPCPTSRKAGQTP*APHLAPEEQPLESP
Trigger: AGGGGATTCCAGTGGCTGCTCTTCTGGAGCCAGATGAGGTGCTCAAGGAGTTTGTCCTGCCTTTCTTGATGTTGGACATGGAGGAGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp GTCCAACATCAAGAAAGGCAGGACAAACTCCTTGAGCACCTCATCTaGCTCCAGAAGAGCAGCCACTGGAATCCCCTGTGGCTTCACAGG +
Preference number: 1 (lower is better)
Translates to: VQHQERQDKLLEHLI*LQKSSHWNPLWLHR
Trigger: CCTGTGAAGCCACAGGGGATTCCAGTGGCTGCTCTTCTGGAGCCAGATGAGGTGCTCAAGGAGTTTGTCCTGCCTTTCTTGATGTTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 90 bp TCCTGCCACCGAGTATCAGTGTCAGAAGGGCTGACAGGGGAGGGCTaGAGAACCTTGGTCCAGATGATGATCAGTGCTTTCTTCTTCCAG +
Preference number: 1 (lower is better)
Translates to: SCHRVSVSEGLTGEG*RTLVQMMISAFFFQ
Trigger: CTGGAAGAAGAAAGCACTGATCATCATCTGGACCAAGGTTCTTCAGCCCTCCCCTGTCAGCCCTTCTGACACTGATACTCGGTGGCAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 90 bp GGGAAAACTCATCTGAGGATGGCAAGTATTTATGGGCCATCGTCCTaGACTGGGAAAGCAAGGGGTCCTGCTGGTCGCCCTTGTGCTTCA +
Preference number: 1 (lower is better)
Translates to: GKTHLRMASIYGPSS*TGKARGPAGRPCAS
Trigger: TGAAGCACAAGGGCGACCAGCAGGACCCCTTGCTTTCCCAGTTCAGGACGATGGCCCATAAATACTTGCCATCCTCAGATGAGTTTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 90 bp TCTGCTGGTTTTCCTCAGGAAGTCCCTGACACACTCAGCCAATTCTaGGACCACCTCCCTCTCCTCCTTGGGCATGTTGGTAGTATCCAG +
Preference number: 1 (lower is better)
Translates to: SAGFPQEVPDTLSQF*DHLPLLLGHVGSIQ
Trigger: CTGGATACTACCAACATGCCCAAGGAGGAGAGGGAGGTGGTCTCAGAATTGGCTGAGTGTGTCAGGGACTTCCTGAGGAAAACCAGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 90 bp AGGCAATTCTTCCAAAGGCCGCTGCATGATCAACTGCACCCTGGATaGCCTGTAGCTCTAGCTTACACTGGTTATCAGCGTAGCCCAGCA +
Preference number: 1 (lower is better)
Translates to: RQFFQRPLHDQLHPG*PVALAYTGYQRSPA
Trigger: TGCTGGGCTACGCTGATAACCAGTGTAAGCTAGAGCTACAGGGCATCCAGGGTGCAGTTGATCATGCAGCGGCCTTTGGAAGAATTGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
3UTR GCA 90 bp ATCGTCCTGAACTGGGAAAGCAAGGGGTCCTGCTGGTCGCCCTTGTaGTTCATCATTTCCCACCAGACATCTAAGAAGAAGGCCACATCC +
Preference number: 1 (lower is better)
Translates to: IVLNWESKGSCWSPL*FIISHQTSKKKATS
Trigger: GGATGTGGCCTTCTTCTTAGATGTCTGGTGGGAAATGATGAAGCACAAGGGCGACCAGCAGGACCCCTTGCTTTCCCAGTTCAGGACGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp ACGTGTTCCCAATCAGACTTGGTCAACTGTACCAGGGCTTTGGGGTaGAACAGCTGCTCAGCCATCAAGAAGCCCCCATGCAGAATAGTC +
Preference number: 1 (lower is better)
Translates to: TCSQSDLVNCTRALG*NSCSAIKKPPCRIV
Trigger: GACTATTCTGCATGGGGGCTTCTTGATGGCTGAGCAGCTGTTCCACCCCAAAGCCCTGGTACAGTTGACCAAGTCTGATTGGGAACACGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp ATCACTGTAGCTAGTTTGTCTAGGTACACGGTGGCCGACACCTCCTaGGTGTCATCCTCCAGAAGTGCAAACACACTCAGCATGTCAGCC +
Preference number: 1 (lower is better)
Translates to: ITVASLSRYTVADTS*VSSSRSANTLSMSA
Trigger: GGCTGACATGCTGAGTGTGTTTGCACTTCTGGAGGATGACACCCAGGAGGTGTCGGCCACCGTGTACCTAGACAAACTAGCTACAGTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp GCCTCCTTTACCTTGTCTGCCAGGGCCTGTCGATGGTATGGGTTCTaGGTGTCCGAGTTCCACACAGAGATCACTGTAGCTAGTTTGTCT +
Preference number: 1 (lower is better)
Translates to: ASFTLSARACRWYGF*VSEFHTEITVASLS
Trigger: AGACAAACTAGCTACAGTGATCTCTGTGTGGAACTCGGACACCCAGAACCCATACCATCGACAGGCCCTGGCAGACAAGGTAAAGGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp CCTTCAAAGAAGTTCTTTAGTCTCAGGCCCACAGTCCAATCTAGCTaGTCTAATTTGCGGTGGAGCCAGGACAGGGACTTGGCCCAGGTG +
Preference number: 1 (lower is better)
Translates to: PSKKFFSLRPTVQSS*SNLRWSQDRDLAQV
Trigger: CACCTGGGCCAAGTCCCTGTCCTGGCTCCACCGCAAATTAGACCAGCTAGATTGGACTGTGGGCCTGAGACTAAAGAACTTCTTTGAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 90 bp CAATCAGACTTGGTCAACTGTACCAGGGCTTTGGGGTGGAACAGCTaGTCAGCCATCAAGAAGCCCCCATGCAGAATAGTCATCTCCTCA +
Preference number: 1 (lower is better)
Translates to: QSDLVNCTRALGWNS*SAIKKPPCRIVISS
Trigger: TGAGGAGATGACTATTCTGCATGGGGGCTTCTTGATGGCTGAGCAGCTGTTCCACCCCAAAGCCCTGGTACAGTTGACCAAGTCTGATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 90 bp CGCTCCTCAGGGCTAATGTTCTTGGCGATAGACTTTAAGAAGCGCTaGTCGTCTACCTTCTGGAGCAAGGAGCTGACAGAAGGGTTGCTT +
Preference number: 1 (lower is better)
Translates to: RSSGLMFLAIDFKKR*SSTFWSKELTEGLL
Trigger: AAGCAACCCTTCTGTCAGCTCCTTGCTCCAGAAGGTAGACGAGCAGCGCTTCTTAAAGTCTATCGCCAAGAACATTAGCCCTGAGGAGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp GCTTTCCCTGGGGTGTCCAGACTCACCAACGGAGTCAGGATCGAGTaGCTCTCCCTTTTCATCAAGTCTTCTAAGTCTGGCAACTCTTTC +
Preference number: 1 (lower is better)
Translates to: AFPGVSRLTNGVRIE*LSLFIKSSKSGNSF
Trigger: GAAAGAGTTGCCAGACTTAGAAGACTTGATGAAAAGGGAGAGCCACTCGATCCTGACTCCGTTGGTGAGTCTGGACACCCCAGGGAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
3UTR CCA 90 bp CTCTTTGGAGGATGGGAAAACTCATCTGAGGATGGCAAGTATTTATaGGCCATCGTCCTGAACTGGGAAAGCAAGGGGTCCTGCTGGTCG +
Preference number: 1 (lower is better)
Translates to: LFGGWENSSEDGKYL*AIVLNWESKGSCWS
Trigger: CGACCAGCAGGACCCCTTGCTTTCCCAGTTCAGGACGATGGCCCATAAATACTTGCCATCCTCAGATGAGTTTTCCCATCCTCCAAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 90 bp TGTCACACAGCCGGTAAGTGTCATAATTTGTTCCCTGACTGCTGTTaGGCATGTCCTGCAGTTCTGCACCCCACTCTTGCAGCAGGTTGT +
Preference number: 1 (lower is better)
Translates to: CHTAGKCHNLFPDCC*ACPAVLHPTLAAGC
Trigger: ACAACCTGCTGCAAGAGTGGGGTGCAGAACTGCAGGACATGCTCAACAGCAGTCAGGGAACAAATTATGACACTTACCGGCTGTGTGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 90 bp TCTAAGAAGAAGGCCACATCCTTGGAAGATGTGTCAACAGTCATGTaGTCCAGGAAGCTCTGTAGTTCTGAGCGGCCAATGGTGGTAGGC +
Preference number: 1 (lower is better)
Translates to: SKKKATSLEDVSTVM*SRKLCSSERPMVVG
Trigger: GCCTACCACCATTGGCCGCTCAGAACTACAGAGCTTCCTGGAGCACATGACTGTTGACACATCTTCCAAGGATGTGGCCTTCTTCTTAGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 90 bp AAGTATTTATGGGCCATCGTCCTGAACTGGGAAAGCAAGGGGTCCTaGTGGTCGCCCTTGTGCTTCATCATTTCCCACCAGACATCTAAG +
Preference number: 1 (lower is better)
Translates to: KYLWAIVLNWESKGS*WSPLCFIISHQTSK
Trigger: CTTAGATGTCTGGTGGGAAATGATGAAGCACAAGGGCGACCAGCAGGACCCCTTGCTTTCCCAGTTCAGGACGATGGCCCATAAATACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp AACTCATCTGAGGATGGCAAGTATTTATGGGCCATCGTCCTGAACTaGGAAAGCAAGGGGTCCTGCTGGTCGCCCTTGTGCTTCATCATT +
Preference number: 1 (lower is better)
Translates to: NSSEDGKYLWAIVLN*ESKGSCWSPLCFII
Trigger: AATGATGAAGCACAAGGGCGACCAGCAGGACCCCTTGCTTTCCCAGTTCAGGACGATGGCCCATAAATACTTGCCATCCTCAGATGAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 90 bp TGTAGTTCTGAGCGGCCAATGGTGGTAGGCAAGGCCATTAGCAGCTaGATGAAGAGTCCAGAAGCTTCCAGAGACTTGAGCAGCTCAAAA +
Preference number: 1 (lower is better)
Translates to: CSSERPMVVGKAISS*MKSPEASRDLSSSK
Trigger: TTTTGAGCTGCTCAAGTCTCTGGAAGCTTCTGGACTCTTCATTCAGCTGCTAATGGCCTTGCCTACCACCATTGGCCGCTCAGAACTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 90 bp CCTTGTTCTTCCGTGAACTTCAGAGCAGGGAAGGCAGTGAGAATCTaGGCCAAGAACCTATGTGTGCCAAGATTGGTCACAGCTAGGCTA +
Preference number: 1 (lower is better)
Translates to: PCSSVNFRAGKAVRI*AKNLCVPRLVTARL
Trigger: TAGCCTAGCTGTGACCAATCTTGGCACACATAGGTTCTTGGCTCAGATTCTCACTGCCTTCCCTGCTCTGAAGTTCACGGAAGAACAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 90 bp TGTGGCTTCACAGGATTCGTCAGGCAGCTTACCAGCTCCAGAAACTaGTTCTCTTCTTTGGGTGTGGAGAACTTGGTCCAGACAGTTTCT +
Preference number: 1 (lower is better)
Translates to: CGFTGFVRQLTSSRN*FSSLGVENLVQTVS
Trigger: AGAAACTGTCTGGACCAAGTTCTCCACACCCAAAGAAGAGAAGCAGTTTCTGGAGCTGGTAAGCTGCCTGACGAATCCTGTGAAGCCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 90 bp GACAGTTTCTTTGAGGCAAGACACCATGAAACTGGTACATGGATTTaGCCCTTGTTCTTCCGTGAACTTCAGAGCAGGGAAGGCAGTGAG +
Preference number: 1 (lower is better)
Translates to: DSFFEARHHETGTWI*PLFFRELQSREGSE
Trigger: CTCACTGCCTTCCCTGCTCTGAAGTTCACGGAAGAACAAGGGGCAAATCCATGTACCAGTTTCATGGTGTCTTGCCTCAAAGAAACTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp ATGGTGGGACCCACATCTGGGTCAGACTTAAACCTCTTTGGAGGATaGGAAAACTCATCTGAGGATGGCAAGTATTTATGGGCCATCGTC +
Preference number: 1 (lower is better)
Translates to: MVGPTSGSDLNLFGG*ENSSEDGKYLWAIV
Trigger: GACGATGGCCCATAAATACTTGCCATCCTCAGATGAGTTTTCCCATCCTCCAAAGAGGTTTAAGTCTGACCCAGATGTGGGTCCCACCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp ATGTTCTTGGCGATAGACTTTAAGAAGCGCTGCTCGTCTACCTTCTaGAGCAAGGAGCTGACAGAAGGGTTGCTTTTGCTTAGAGTCTCG +
Preference number: 1 (lower is better)
Translates to: MFLAIDFKKRCSSTF*SKELTEGLLLLRVS
Trigger: CGAGACTCTAAGCAAAAGCAACCCTTCTGTCAGCTCCTTGCTCCAGAAGGTAGACGAGCAGCGCTTCTTAAAGTCTATCGCCAAGAACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 90 bp GTTGAGGTCTTCCTGAAAACCCTCCAAGTAATCAGACAACCTGTCTaGGAGACCCTTTGGCCCCAAATAATGCAGGACACCAGAAAGAAC +
Preference number: 1 (lower is better)
Translates to: VEVFLKTLQVIRQPV*ETLWPQIMQDTRKN
Trigger: GTTCTTTCTGGTGTCCTGCATTATTTGGGGCCAAAGGGTCTCTCAGACAGGTTGTCTGATTACTTGGAGGGTTTTCAGGAAGACCTCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp GTGAAACTACTGCACAGACCTCCTATGCAGGACACAGCCAAGTGGTaGGAGCATTTCTCAAAACATAAGTGCCAGACTGATAACAGACTG +
Preference number: 1 (lower is better)
Translates to: VKLLHRPPMQDTAKW*EHFSKHKCQTDNRL
Trigger: CAGTCTGTTATCAGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGGAGGTCTGTGCAGTAGTTTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
ENSMUST00000170710.8
3UTR CCA 90 bp AGTCCAGAAGCTTCCAGAGACTTGAGCAGCTCAAAAAGGACTGTGTaGTTGATGGTAGGGATCATGTTGCCCACGGAGAAGAATACATCT +
Preference number: 1 (lower is better)
Translates to: SPEASRDLSSSKRTV*LMVGIMLPTEKNTS
Trigger: AGATGTATTCTTCTCCGTGGGCAACATGATCCCTACCATCAACCACACAGTCCTTTTTGAGCTGCTCAAGTCTCTGGAAGCTTCTGGACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 90 bp ATCTGGGTCAGACTTAAACCTCTTTGGAGGATGGGAAAACTCATCTaGGGATGGCAAGTATTTATGGGCCATCGTCCTGAACTGGGAAAG +
Preference number: 1 (lower is better)
Translates to: IWVRLKPLWRMGKLI*GWQVFMGHRPELGK
Trigger: CTTTCCCAGTTCAGGACGATGGCCCATAAATACTTGCCATCCTCAGATGAGTTTTCCCATCCTCCAAAGAGGTTTAAGTCTGACCCAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 90 bp ATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTaGCAGACTGATAACAGACTGGACTGGAGATGTAAGTGCTCTTCA +
Preference number: 1 (lower is better)
Translates to: MQDTAKWWEHFSKHK*QTDNRLDWRCKCSS
Trigger: TGAAGAGCACTTACATCTCCAGTCCAGTCTGTTATCAGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
ENSMUST00000170710.8
3UTR CCA 90 bp AGAGTGAAACTACTGCACAGACCTCCTATGCAGGACACAGCCAAGTaGTGGGAGCATTTCTCAAAACATAAGTGCCAGACTGATAACAGA +
Preference number: 1 (lower is better)
Translates to: RVKLLHRPPMQDTAK*WEHFSKHKCQTDNR
Trigger: TCTGTTATCAGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGGAGGTCTGTGCAGTAGTTTCACTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
ENSMUST00000170710.8
3UTR CCA 90 bp GGTGGGAGCATTTCTCAAAACATAAGTGCCAGACTGATAACAGACTaGACTGGAGATGTAAGTGCTCTTCATGTGTCTTCCACTAACCCG +
Preference number: 1 (lower is better)
Translates to: GGSISQNISARLITD*TGDVSALHVSSTNP
Trigger: CGGGTTAGTGGAAGACACATGAAGAGCACTTACATCTCCAGTCCAGTCTGTTATCAGTCTGGCACTTATGTTTTGAGAAATGCTCCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
3UTR CCA 90 bp AGCTTACAGATATCAAAAAGGGTAGCTGGCACCTCACACTTGAAGTaGCCTTCAAAGAAGTTCTTTAGTCTCAGGCCCACAGTCCAATCT +
Preference number: 1 (lower is better)
Translates to: SLQISKRVAGTSHLK*PSKKFFSLRPTVQS
Trigger: AGATTGGACTGTGGGCCTGAGACTAAAGAACTTCTTTGAAGGCCACTTCAAGTGTGAGGTGCCAGCTACCCTTTTTGATATCTGTAAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 90 bp AAGAAAGAACAGAGAGCTGAAGTTCCTGGGCAAAAGGCTTCAGGTTaGGCAGGGGAACAAACTGAATATACTCTAGACTGTAAGGGACAT +
Preference number: 1 (lower is better)
Translates to: KKEQRAEVPGQKASG*AGEQTEYTLDCKGH
Trigger: ATGTCCCTTACAGTCTAGAGTATATTCAGTTTGTTCCCCTGCTCAACCTGAAGCCTTTTGCCCAGGAACTTCAGCTCTCTGTTCTTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 90 bp TGGCCCCAAATAATGCAGGACACCAGAAAGAACTTTATTTTTGTCTaGAAGAGAGAGGTCTTCATAGCATTCCAGGGTCAAGCAGATTAC +
Preference number: 1 (lower is better)
Translates to: WPQIMQDTRKNFIFV*KREVFIAFQGQADY
Trigger: GTAATCTGCTTGACCCTGGAATGCTATGAAGACCTCTCTCTTCCAGACAAAAATAAAGTTCTTTCTGGTGTCCTGCATTATTTGGGGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp CCTTGGGCCCAGGGACCCACCGACTGCATCAACCTGACTGCATCCAGGACACTGAGCAAGGGGTCCTGCTaGTCGCCCTTGTGCTTCATC +
Preference number: 2 (lower is better)
Translates to: PWAQGPTDCINLTASRTLSKGSC*SPLCFI
Trigger: GATGAAGCACAAGGGCGACCAGCAGGACCCCTTGCT...CAGTGTCCTGGATGCAGTCAGGTTGATGCAGTCGGTGGGTCCCTGGGCCCAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp CCTTGGGCCCAGGGACCCACCGACTGCATCAACCTGACTGCATCCAGGACACTGGCCATCGTCCTGAACTaGGAAAGCAAGGGGTCCTGC +
Preference number: 2 (lower is better)
Translates to: PWAQGPTDCINLTASRTLAIVLN*ESKGSC
Trigger: GCAGGACCCCTTGCTTTCCCAGTTCAGGACGATGGC...CAGTGTCCTGGATGCAGTCAGGTTGATGCAGTCGGTGGGTCCCTGGGCCCAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp ACCAGGTGGGCCACGGAGGCCACAGCTTTAGCCAGGCCCTGTTCAGAGGTACTCGGCCTGTCGATGGTATaGGTTCTGGGTGTCCGAGTT +
Preference number: 2 (lower is better)
Translates to: TRWATEATALARPCSEVLGLSMV*VLGVRV
Trigger: AACTCGGACACCCAGAACCCATACCATCGACAGGCC...GAGTACCTCTGAACAGGGCCTGGCTAAAGCTGTGGCCTCCGTGGCCCACCTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR GCA 90 bp AGCACTCCATCCAGGCGAGAAGGCCCGTGCCAGGCCCATACCCTTCGTGGACCTACTCACATCTCGCTCTaGCTCCTTTACCTTGTCTGC +
Preference number: 2 (lower is better)
Translates to: STPSRREGPCQAHTLRGPTHISL*LLYLVC
Trigger: GCAGACAAGGTAAAGGAGGCAGAGCGAGATGTGAGT...AGGTCCACGAAGGGTATGGGCCTGGCACGGGCCTTCTCGCCTGGATGGAGTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp ACCAGGTGGGCCACGGAGGCCACAGCTTTAGCCAGGCCCTGTTCAGAGGTACTCGCTGGGAATGTGCTGTaGCTGAGGAGATCTCCTTCA +
Preference number: 2 (lower is better)
Translates to: TRWATEATALARPCSEVLAGNVL*LRRSPS
Trigger: TGAAGGAGATCTCCTCAGCCACAGCACATTCCCAGC...GAGTACCTCTGAACAGGGCCTGGCTAAAGCTGTGGCCTCCGTGGCCCACCTGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp GTTCTTAGCTCTGGGCCCTGCAGAAACACCACGGTGGACGGAGGCATAGTTTTGGCCAGGACAGGGACTTaGCCCAGGTGTCTGGGGAGA +
Preference number: 2 (lower is better)
Translates to: VLSSGPCRNTTVDGGIVLARTGT*PRCLGR
Trigger: TCTCCCCAGACACCTGGGCCAAGTCCCTGTCCTGGC...CAAAACTATGCCTCCGTCCACCGTGGTGTTTCTGCAGGGCCCAGAGCTAAGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 90 bp TTGGCCAGTGAGGTGAGACTCACATCTCGCTCTGCCTCCTTTACCTaGTCTGCCAGGGCCTGTCGATGGTATGGGTTCTGGGTGTCCGAG +
Preference number: 2 (lower is better)
Translates to: LASEVRLTSRSASFT*SARACRWYGFWVSE
Trigger: CTCGGACACCCAGAACCCATACCATCGACAGGCCCTGGCAGACAAGGTAAAGGAGGCAGAGCGAGATGTGAGTCTCACCTCACTGGCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR TCA 90 bp TGCCTCCTTTACCTTGTCTGCCAGGGCCTGTCGATGGTATGGGTTCTGGGTGTCCAGTGTCAGAAGGGCTaGCAGGGGAGGGCTGAAGAA +
Preference number: 2 (lower is better)
Translates to: CLLYLVCQGLSMVWVLGVQCQKG*QGRAEE
Trigger: TTCTTCAGCCCTCCCCTGTCAGCCCTTCTGACACTG...GACACCCAGAACCCATACCATCGACAGGCCCTGGCAGACAAGGTAAAGGAGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 90 bp TTCAAGGCCTCCACAATGGGCTGTCCCACGTGTTCCCAATCAGACTaGGTCAACTGTACCAGGGCTTTGGGGTGGAACAGCTGCTCAGCC +
Preference number: 2 (lower is better)
Translates to: FKASTMGCPTCSQSD*VNCTRALGWNSCSA
Trigger: GGCTGAGCAGCTGTTCCACCCCAAAGCCCTGGTACAGTTGACCAAGTCTGATTGGGAACACGTGGGACAGCCCATTGTGGAGGCCTTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 90 bp GGGTTCTGGGTGTCCGAGTTCCACACAGAGATCACTGTAGCTAGTTaGTCTAGGTACACGGTGGCCGACACCTCCTGGGTGTCATCCTCC +
Preference number: 2 (lower is better)
Translates to: GFWVSEFHTEITVAS*SRYTVADTSWVSSS
Trigger: GGAGGATGACACCCAGGAGGTGTCGGCCACCGTGTACCTAGACAAACTAGCTACAGTGATCTCTGTGTGGAACTCGGACACCCAGAACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR TCA 90 bp GTTCTTAGCTCTGGGCCCTGCAGAAACACCACGGTGGACGGAGGCATAGTTTTGGGCTACACCAAGGCATaGCTTGTACCAGGGCCACCA +
Preference number: 2 (lower is better)
Translates to: VLSSGPCRNTTVDGGIVLGYTKA*LVPGPP
Trigger: TGGTGGCCCTGGTACAAGTCATGCCTTGGTGTAGCC...CAAAACTATGCCTCCGTCCACCGTGGTGTTTCTGCAGGGCCCAGAGCTAAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR TCA 90 bp CCTTGGGCCCAGGGACCCACCGACTGCATCAACCTGACTGCATCCAGGACACTGCAAAAGGCTTCAGGTTaGGCAGGGGAACAAACTGAA +
Preference number: 2 (lower is better)
Translates to: PWAQGPTDCINLTASRTLQKASG*AGEQTE
Trigger: TTCAGTTTGTTCCCCTGCTCAACCTGAAGCCTTTTG...CAGTGTCCTGGATGCAGTCAGGTTGATGCAGTCGGTGGGTCCCTGGGCCCAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp GTTCTTAGCTCTGGGCCCTGCAGAAACACCACGGTGGACGGAGGCATAGTTTTGTGTCTAGGTACACGGTaGCCGACACCTCCTGGGTGT +
Preference number: 2 (lower is better)
Translates to: VLSSGPCRNTTVDGGIVLCLGTR*PTPPGC
Trigger: ACACCCAGGAGGTGTCGGCCACCGTGTACCTAGACA...CAAAACTATGCCTCCGTCCACCGTGGTGTTTCTGCAGGGCCCAGAGCTAAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp ACCAGGTGGGCCACGGAGGCCACAGCTTTAGCCAGGCCCTGTTCAGAGGTACTCCATTCAGCATTCTGCTaGTTTTCCTCAGGAAGTCCC +
Preference number: 2 (lower is better)
Translates to: TRWATEATALARPCSEVLHSAFC*FSSGSP
Trigger: GGGACTTCCTGAGGAAAACCAGCAGAATGCTGAATG...GAGTACCTCTGAACAGGGCCTGGCTAAAGCTGTGGCCTCCGTGGCCCACCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 90 bp CCCACCTCCTCCATGTCCAACATCAAGAAAGGCAGGACAAACTCCTaGAGCACCTCATCTGGCTCCAGAAGAGCAGCCACTGGAATCCCC +
Preference number: 2 (lower is better)
Translates to: PTSSMSNIKKGRTNS*STSSGSRRAATGIP
Trigger: GGGGATTCCAGTGGCTGCTCTTCTGGAGCCAGATGAGGTGCTCAAGGAGTTTGTCCTGCCTTTCTTGATGTTGGACATGGAGGAGGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 90 bp AAGTTCTTTAGTCTCAGGCCCACAGTCCAATCTAGCTGGTCTAATTaGCGGTGGAGCCAGGACAGGGACTTGGCCCAGGTGTCTGGGGAG +
Preference number: 2 (lower is better)
Translates to: KFFSLRPTVQSSWSN*RWSQDRDLAQVSGE
Trigger: CTCCCCAGACACCTGGGCCAAGTCCCTGTCCTGGCTCCACCGCAAATTAGACCAGCTAGATTGGACTGTGGGCCTGAGACTAAAGAACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR TCA 90 bp TGGCGCCGCTCCTCAGGGCTAATGTTCTTGGCGATAGACTTTAAGAAGCGCTGCGTTTGGCCAGTGAGGTaGGACTCACATCTCGCTCTG +
Preference number: 2 (lower is better)
Translates to: WRRSSGLMFLAIDFKKRCVWPVR*DSHLAL
Trigger: CAGAGCGAGATGTGAGTCTCACCTCACTGGCCAAAC...GCAGCGCTTCTTAAAGTCTATCGCCAAGAACATTAGCCCTGAGGAGCGGCGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR TCA 90 bp TGGCGCCGCTCCTCAGGGCTAATGTTCTTGGCGATAGACTTTAAGAAGCGCTGCTGGCAATGGAGGCAGTaGTGTCCTCAAGGCCCTTGT +
Preference number: 2 (lower is better)
Translates to: WRRSSGLMFLAIDFKKRCWQWRQ*CPQGPC
Trigger: ACAAGGGCCTTGAGGACATCACTGCCTCCATTGCCA...GCAGCGCTTCTTAAAGTCTATCGCCAAGAACATTAGCCCTGAGGAGCGGCGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR TCA 90 bp CAAGGCCAGCACGTAGAGGGGTTCACAGACCTCCTGAGGGAGCATGGCCATGATGAAAGAACAGAGAGCTaGAGTTCCTGGGCAAAAGGC +
Preference number: 2 (lower is better)
Translates to: QGQHVEGFTDLLREHGHDERTES*SSWAKG
Trigger: GCCTTTTGCCCAGGAACTTCAGCTCTCTGTTCTTTC...ATCATGGCCATGCTCCCTCAGGAGGTCTGTGAACCCCTCTACGTGCTGGCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR GCA 90 bp CAAGGCCAGCACGTAGAGGGGTTCACAGACCTCCTGAGGGAGCATGGCCATGATTACAACAGCTCTGGCTaGAGAGAAACTGGAACACTC +
Preference number: 2 (lower is better)
Translates to: QGQHVEGFTDLLREHGHDYNSSG*RETGTL
Trigger: GAGTGTTCCAGTTTCTCTGCAGCCAGAGCTGTTGTA...ATCATGGCCATGCTCCCTCAGGAGGTCTGTGAACCCCTCTACGTGCTGGCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp GTCCTCAAGGCCCTTGTCATTCAGCATTCTGCTGGTTTTCCTCAGGAAGTCCCTTCAAGGCCTCCACAATaGGCTGTCCCACGTGTTCCC +
Preference number: 2 (lower is better)
Translates to: VLKALVIQHSAGFPQEVPSRPPQ*AVPRVP
Trigger: GGGAACACGTGGGACAGCCCATTGTGGAGGCCTTGA...AGGGACTTCCTGAGGAAAACCAGCAGAATGCTGAATGACAAGGGCCTTGAGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 90 bp GGTGGACGGAGGCATAGTTTTGTTCTGCCCTCAACAGGTCAGAAGTaGTTGATCTTTTGTAGCAGGGTTTGGCGCCGCTCCTCAGGGCTA +
Preference number: 2 (lower is better)
Translates to: GGRRHSFVLPSTGQK*LIFCSRVWRRSSGL
Trigger: TAGCCCTGAGGAGCGGCGCCAAACCCTGCTACAAAAGATCAACAACTTCTGACCTGTTGAGGGCAGAACAAAACTATGCCTCCGTCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR GCA 90 bp CAACCGTCCAAAGGAAGCCAGTTACAACAGCTCTGGCTGCAGAGAAACTGGAACTTGGGGTGGAACAGCTaGTCAGCCATCAAGAAGCCC +
Preference number: 2 (lower is better)
Translates to: QPSKGSQLQQLWLQRNWNLGWNS*SAIKKP
Trigger: GGGCTTCTTGATGGCTGAGCAGCTGTTCCACCCCAA...GTTCCAGTTTCTCTGCAGCCAGAGCTGTTGTAACTGGCTTCCTTTGGACGGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp CCCACATCCATCACCAGAAGGGAAAGCATCTGGTCAGAGATACTGCTGGAGACTCAGAAGAGCAGCCACTaGAATCCCCTGTGGCTTCAC +
Preference number: 2 (lower is better)
Translates to: PTSITRRESIWSEILLETQKSSH*NPLWLH
Trigger: GTGAAGCCACAGGGGATTCCAGTGGCTGCTCTTCTG...AGTCTCCAGCAGTATCTCTGACCAGATGCTTTCCCTTCTGGTGATGGATGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp CAAGGCCAGCACGTAGAGGGGTTCACAGACCTCCTGAGGGAGCATGGCCATGATATCAAAAAGGGTAGCTaGCACCTCACACTTGAAGTG +
Preference number: 2 (lower is better)
Translates to: QGQHVEGFTDLLREHGHDIKKGS*HLTLEV
Trigger: CACTTCAAGTGTGAGGTGCCAGCTACCCTTTTTGAT...ATCATGGCCATGCTCCCTCAGGAGGTCTGTGAACCCCTCTACGTGCTGGCCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 90 bp AGGGCCACCAGAAAGCCCTTGCTAAACAGTCTGACCTCCTCAGGATaGCCCACATCCATCACCAGAAGGGAAAGCATCTGGTCAGAGATA +
Preference number: 2 (lower is better)
Translates to: RATRKPLLNSLTSSG*PTSITRRESIWSEI
Trigger: TATCTCTGACCAGATGCTTTCCCTTCTGGTGATGGATGTGGGCAATCCTGAGGAGGTCAGACTGTTTAGCAAGGGCTTTCTGGTGGCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 90 bp ATCTTTTGTAGCAGGGTTTGGCGCCGCTCCTCAGGGCTAATGTTCTaGGCGATAGACTTTAAGAAGCGCTGCTCGTCTACCTTCTGGAGC +
Preference number: 2 (lower is better)
Translates to: IFCSRVWRRSSGLMF*AIDFKKRCSSTFWS
Trigger: GCTCCAGAAGGTAGACGAGCAGCGCTTCTTAAAGTCTATCGCCAAGAACATTAGCCCTGAGGAGCGGCGCCAAACCCTGCTACAAAAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR GCA 90 bp GAAGGGAAAGCATCTGGTCAGAGATACTGCTGGAGACTGAACAGCACTCCATCCTGCTGGTCGCCCTTGTaGTTCATCATTTCCCACCAG +
Preference number: 2 (lower is better)
Translates to: EGKASGQRYCWRLNSTPSCWSPL*FIISHQ
Trigger: CTGGTGGGAAATGATGAAGCACAAGGGCGACCAGCA...GGATGGAGTGCTGTTCAGTCTCCAGCAGTATCTCTGACCAGATGCTTTCCCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR GCA 90 bp GACACTGGTCAGACTGTTACAGAGGAGTTTGACCACATGGCTCCAACCGTCCAACTGTTGAGCATGTCCTaGAGTTCTGCACCCCACTCT +
Preference number: 2 (lower is better)
Translates to: DTGQTVTEEFDHMAPTVQLLSMS*SSAPHS
Trigger: AGAGTGGGGTGCAGAACTGCAGGACATGCTCAACAG...TTGGACGGTTGGAGCCATGTGGTCAAACTCCTCTGTAACAGTCTGACCAGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp GAGGAGTTCCAGAATGTGGGTCACAAGATCCTTGCTGTCCAGCGTGAGGTAGCGACTGCTTCTCTTCTTTaGGTGTGGAGAACTTGGTCC +
Preference number: 2 (lower is better)
Translates to: EEFQNVGHKILAVQREVATASLL*VWRTWS
Trigger: GGACCAAGTTCTCCACACCCAAAGAAGAGAAGCAGT...CGCTACCTCACGCTGGACAGCAAGGATCTTGTGACCCACATTCTGGAACTCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp GACACTGGTCAGACTGTTACAGAGGAGTTTGACCACATGGCTCCAACCGTCCAACTTGGCCCAGGTGTCTaGGGAGAAGGTTTCTGTGTT +
Preference number: 2 (lower is better)
Translates to: DTGQTVTEEFDHMAPTVQLGPGV*GEGFCV
Trigger: AACACAGAAACCTTCTCCCCAGACACCTGGGCCAAG...TTGGACGGTTGGAGCCATGTGGTCAAACTCCTCTGTAACAGTCTGACCAGTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 90 bp TCTAGCAGACTCAAGACCAAGTCTGGTTCTCTGAAGAGAGACCTGTaGTTAACCAGGCAGGCAACCCACTCGTCTGAAAAGGCCCACTTC +
Preference number: 2 (lower is better)
Translates to: SSRLKTKSGSLKRDL*LTRQATHSSEKAHF
Trigger: GAAGTGGGCCTTTTCAGACGAGTGGGTTGCCTGCCTGGTTAACAACAGGTCTCTCTTCAGAGAACCAGACTTGGTCTTGAGTCTGCTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR TCA 90 bp TCCCTGGGGTGTCCAGACTCACCAACGGAGTCAGGATCGAGTGGCTCTCCCTTTCTAAAAACAGAGCTTTaGAGAGTGAAACTACTGCAC +
Preference number: 2 (lower is better)
Translates to: SLGCPDSPTESGSSGSPFLKTEL*RVKLLH
Trigger: GTGCAGTAGTTTCACTCTTCAAAGCTCTGTTTTTAG...AAAGGGAGAGCCACTCGATCCTGACTCCGTTGGTGAGTCTGGACACCCCAGGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
3UTR-3UTR TCA 90 bp TCCAGGCCTGCATTGGCTTCGAGGGTCTGGATGAAGAGCTTCAGACTCAGGCCCATGGGAAAACTCATCTaGGGATGGCAAGTATTTATG +
Preference number: 2 (lower is better)
Translates to: SRPALASRVWMKSFRLRPMGKLI*GWQVFM
Trigger: CATAAATACTTGCCATCCTCAGATGAGTTTTCCCAT...GGGCCTGAGTCTGAAGCTCTTCATCCAGACCCTCGAAGCCAATGCAGGCCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR TCA 90 bp AGTAATCAGACAACCTGTCTGAGAGACCCTTTGGCCCCAAATAATGCAGGACACACACTCAGCCAATTCTaGGACCACCTCCCTCTCCTC +
Preference number: 2 (lower is better)
Translates to: SNQTTCLRDPLAPNNAGHTLSQF*DHLPLL
Trigger: GAGGAGAGGGAGGTGGTCTCAGAATTGGCTGAGTGT...GTGTCCTGCATTATTTGGGGCCAAAGGGTCTCTCAGACAGGTTGTCTGATTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp AAGGCACAGCACTTCATTCCAAGGGACAGGATTCTCTTTTGGATCTGCTTCAGCACTGTACCAGGGCTTTaGGGTGGAACAGCTGCTCAG +
Preference number: 2 (lower is better)
Translates to: KAQHFIPRDRILFWICFSTVPGL*GGTAAQ
Trigger: CTGAGCAGCTGTTCCACCCCAAAGCCCTGGTACAGT...GCTGAAGCAGATCCAAAAGAGAATCCTGTCCCTTGGAATGAAGTGCTGTGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp TGGCGCCGCTCCTCAGGGCTAATGTTCTTGGCGATAGACTTTAAGAAGCGCTGCAGAAGGCCACATCCTTaGAAGATGTGTCAACAGTCA +
Preference number: 2 (lower is better)
Translates to: WRRSSGLMFLAIDFKKRCRRPHP*KMCQQS
Trigger: TGACTGTTGACACATCTTCCAAGGATGTGGCCTTCT...GCAGCGCTTCTTAAAGTCTATCGCCAAGAACATTAGCCCTGAGGAGCGGCGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp AAGGCACAGCACTTCATTCCAAGGGACAGGATTCTCTTTTGGATCTGCTTCAGCTGGCCAAAAGAGGCATaGTGGGACCCACATCTGGGT +
Preference number: 2 (lower is better)
Translates to: KAQHFIPRDRILFWICFSWPKEA*WDPHLG
Trigger: ACCCAGATGTGGGTCCCACCATGCCTCTTTTGGCCA...GCTGAAGCAGATCCAAAAGAGAATCCTGTCCCTTGGAATGAAGTGCTGTGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 90 bp GGATTCGTCAGGCAGCTTACCAGCTCCAGAAACTGCTTCTCTTCTTaGGGTGTGGAGAACTTGGTCCAGACAGTTTCTTTGAGGCAAGAC +
Preference number: 2 (lower is better)
Translates to: GFVRQLTSSRNCFSS*GVENLVQTVSLRQD
Trigger: GTCTTGCCTCAAAGAAACTGTCTGGACCAAGTTCTCCACACCCAAAGAAGAGAAGCAGTTTCTGGAGCTGGTAAGCTGCCTGACGAATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR TCA 90 bp CCCACATCCATCACCAGAAGGGAAAGCATCTGGTCAGAGATACTGCTGGAGACTAAGCTTCCAGAGACTTaGGCAGCTCAAAAAGGACTG +
Preference number: 2 (lower is better)
Translates to: PTSITRRESIWSEILLETKLPET*AAQKGL
Trigger: CAGTCCTTTTTGAGCTGCTCAAGTCTCTGGAAGCTT...AGTCTCCAGCAGTATCTCTGACCAGATGCTTTCCCTTCTGGTGATGGATGTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR TCA 90 bp AGACTGTTACAGAGGAGTTTGACCACATGGCTCCAACCGTCCAAAGGAAGCCAGCCATTAGCAGCTGAATaGAGAGTCCAGAAGCTTCCA +
Preference number: 2 (lower is better)
Translates to: RLLQRSLTTWLQPSKGSQPLAAE*RVQKLP
Trigger: TGGAAGCTTCTGGACTCTTCATTCAGCTGCTAATGG...CTGGCTTCCTTTGGACGGTTGGAGCCATGTGGTCAAACTCCTCTGTAACAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR TCA 90 bp GAGAGCTTACAGATATCAAAAAGGGTAGCTGGCACCTCACACTTGAAGTGGCCTTTCCCTGACTGCTGTTaGGCATGTCCTGCAGTTCTG +
Preference number: 2 (lower is better)
Translates to: ESLQISKRVAGTSHLKWPFPDCC*ACPAVL
Trigger: CAGAACTGCAGGACATGCTCAACAGCAGTCAGGGAA...AGGCCACTTCAAGTGTGAGGTGCCAGCTACCCTTTTTGATATCTGTAAGCTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp CCCACATCCATCACCAGAAGGGAAAGCATCTGGTCAGAGATACTGCTGGAGACTGATGGCAAGTATTTATaGGCCATCGTCCTGAACTGG +
Preference number: 2 (lower is better)
Translates to: PTSITRRESIWSEILLETDGKYL*AIVLNW
Trigger: CCAGTTCAGGACGATGGCCCATAAATACTTGCCATC...AGTCTCCAGCAGTATCTCTGACCAGATGCTTTCCCTTCTGGTGATGGATGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp GGCCTCAGAGAGCTTACAGATATCAAAAAGGGTAGCTGGCACCTCACACTTGAACACTGGAATCCCCTGTaGCTTCACAGGATTCGTCAG +
Preference number: 2 (lower is better)
Translates to: GLRELTDIKKGSWHLTLEHWNPL*LHRIRQ
Trigger: CTGACGAATCCTGTGAAGCCACAGGGGATTCCAGTG...TTCAAGTGTGAGGTGCCAGCTACCCTTTTTGATATCTGTAAGCTCTCTGAGGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 90 bp TTGAGCAGCTCAAAAAGGACTGTGTGGTTGATGGTAGGGATCATGTaGCCCACGGAGAAGAATACATCTTCCTGCCACCGAGTATCAGTG +
Preference number: 2 (lower is better)
Translates to: LSSSKRTVWLMVGIM*PTEKNTSSCHRVSV
Trigger: CACTGATACTCGGTGGCAGGAAGATGTATTCTTCTCCGTGGGCAACATGATCCCTACCATCAACCACACAGTCCTTTTTGAGCTGCTCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 90 bp CCAGAAGCTTCCAGAGACTTGAGCAGCTCAAAAAGGACTGTGTGGTaGATGGTAGGGATCATGTTGCCCACGGAGAAGAATACATCTTCC +
Preference number: 2 (lower is better)
Translates to: PEASRDLSSSKRTVW*MVGIMLPTEKNTSS
Trigger: GGAAGATGTATTCTTCTCCGTGGGCAACATGATCCCTACCATCAACCACACAGTCCTTTTTGAGCTGCTCAAGTCTCTGGAAGCTTCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp CTCCTATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTGCCGCATTGCTGACAGCTTaGCTAGAAGCAAGCGTGATT +
Preference number: 2 (lower is better)
Translates to: LLCRTQPSGGSISQNISAALLTA*LEASVI
Trigger: AATCACGCTTGCTTCTAGCCAAGCTGTCAGCAATGC...GGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
3UTR-3UTR GCA 90 bp ACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTGCCAGACTGATAACAGATGCACAGACCTCCTATaGAGGACACAGCCAAGTGGT +
Preference number: 2 (lower is better)
Translates to: TAKWWEHFSKHKCQTDNRCTDLL*RTQPSG
Trigger: ACCACTTGGCTGTGTCCTGCATAGGAGGTCTGTGCA...TCTGTTATCAGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
ENSMUST00000170710.8
3UTR-3UTR GCA 90 bp GGGATCATGTTGCCCACGGAGAAGAATACATCTTCCTGCCACCGAGTATCAGTGCCAGATGATGATCAGTaGTTTCTTCTTCCAGGCAAA +
Preference number: 2 (lower is better)
Translates to: GIMLPTEKNTSSCHRVSVPDDDQ*FLLPGK
Trigger: TTTGCCTGGAAGAAGAAAGCACTGATCATCATCTGG...CACTGATACTCGGTGGCAGGAAGATGTATTCTTCTCCGTGGGCAACATGATCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR GCA 90 bp AGACTGTTACAGAGGAGTTTGACCACATGGCTCCAACCGTCCAAAGGAAGCCAGTGTCATTCAGCATTCTaGTGGTTTTCCTCAGGAAGT +
Preference number: 2 (lower is better)
Translates to: RLLQRSLTTWLQPSKGSQCHSAF*WFSSGS
Trigger: ACTTCCTGAGGAAAACCAGCAGAATGCTGAATGACA...CTGGCTTCCTTTGGACGGTTGGAGCCATGTGGTCAAACTCCTCTGTAACAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR GCA 90 bp CAGAACATGACAGAACATCTGGGTATAGACAAACAGGGTTTCCTGAGTAAGATCCTAGCTGGTCTAATTTaGGGTGGAGCCAGGACAGGG +
Preference number: 2 (lower is better)
Translates to: QNMTEHLGIDKQGFLSKILAGLI*GGARTG
Trigger: CCCTGTCCTGGCTCCACCGCAAATTAGACCAGCTAG...GATCTTACTCAGGAAACCCTGTTTGTCTATACCCAGATGTTCTGTCATGTTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp TCTTTAGTCTCAGGCCCACAGTCCAATCTAGCTGGTCTAATTTGCGGTGGAGCCAACCTCTTTGGAGGATaGGAAAACTCATCTGAGGAT +
Preference number: 2 (lower is better)
Translates to: SLVSGPQSNLAGLICGGANLFGG*ENSSED
Trigger: ATCCTCAGATGAGTTTTCCCATCCTCCAAAGAGGTT...GGCTCCACCGCAAATTAGACCAGCTAGATTGGACTGTGGGCCTGAGACTAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 90 bp TGCTTCTCTTCTTTGGGTGTGGAGAACTTGGTCCAGACAGTTTCTTaGAGGCAAGACACCATGAAACTGGTACATGGATTTGCCCCTTGT +
Preference number: 2 (lower is better)
Translates to: CFSSLGVENLVQTVS*RQDTMKLVHGFAPC
Trigger: ACAAGGGGCAAATCCATGTACCAGTTTCATGGTGTCTTGCCTCAAAGAAACTGTCTGGACCAAGTTCTCCACACCCAAAGAAGAGAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 90 bp TCAGAGAGCTTACAGATATCAAAAAGGGTAGCTGGCACCTCACACTaGAAGTGGCCTTCAAAGAAGTTCTTTAGTCTCAGGCCCACAGTC +
Preference number: 2 (lower is better)
Translates to: SESLQISKRVAGTSH*KWPSKKFFSLRPTV
Trigger: GACTGTGGGCCTGAGACTAAAGAACTTCTTTGAAGGCCACTTCAAGTGTGAGGTGCCAGCTACCCTTTTTGATATCTGTAAGCTCTCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR GCA 90 bp ACCCCCATGCCTAGCTGGTTTGGCTTCATTCTGACATTTGTTTCAATAGTATCTTGCACAGACCTCCTATaGAGGACACAGCCAAGTGGT +
Preference number: 2 (lower is better)
Translates to: TPMPSWFGFILTFVSIVSCTDLL*RTQPSG
Trigger: ACCACTTGGCTGTGTCCTGCATAGGAGGTCTGTGCA...AGATACTATTGAAACAAATGTCAGAATGAAGCCAAACCAGCTAGGCATGGGGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
3UTR-3UTR GCA 90 bp ACAGAACATCTGGGTATAGACAAACAGGGTTTCCTGAGTAAGATCCCCTTCTTGTCTGCACCCCACTCTTaGAGCAGGTTGTACATAAGC +
Preference number: 2 (lower is better)
Translates to: TEHLGIDKQGFLSKIPFLSAPHS*SRLYIS
Trigger: GCTTATGTACAACCTGCTGCAAGAGTGGGGTGCAGA...CAAGAAGGGGATCTTACTCAGGAAACCCTGTTTGTCTATACCCAGATGTTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CCA 90 bp CAGAACATGACAGAACATCTGGGTATAGACAAACAGGGTTTCCTGAGTAAGATCCGATGGTATGGGTTCTaGGTGTCCGAGTTCCACACA +
Preference number: 2 (lower is better)
Translates to: QNMTEHLGIDKQGFLSKIRWYGF*VSEFHT
Trigger: TGTGTGGAACTCGGACACCCAGAACCCATACCATCG...GATCTTACTCAGGAAACCCTGTTTGTCTATACCCAGATGTTCTGTCATGTTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR TCA 90 bp ACAAAGCAAATTTCATGTCCATCAGGGTCAGCCAGGATGACCACTTGCACTGTGTCTGGCAACTCTTTCTaGGGACAAGAAAAGGCAATT +
Preference number: 2 (lower is better)
Translates to: TKQISCPSGSARMTTCTVSGNSF*GQEKAI
Trigger: AATTGCCTTTTCTTGTCCTCAGAAAGAGTTGCCAGA...CACAGTGCAAGTGGTCATCCTGGCTGACCCTGATGGACATGAAATTTGCTTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
3UTR-3UTR CCA 90 bp AGACCTCCTATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGAGACTGATAACAGACTaGACTGGAGATGTAAGTGCT +
Preference number: 2 (lower is better)
Translates to: RPPMQDTAKWWEHFSKHKRLITD*TGDVSA
Trigger: AGCACTTACATCTCCAGTCCAGTCTGTTATCAGTCT...CTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGGAGGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
ENSMUST00000170710.8
3UTR-3UTR CCA 90 bp ACAGAACATCTGGGTATAGACAAACAGGGTTTCCTGAGTAAGATCCCCTTCTTGAGAAGGGAAAGCATCTaGTCAGAGATACTGCTGGAG +
Preference number: 2 (lower is better)
Translates to: TEHLGIDKQGFLSKIPFLRRESI*SEILLE
Trigger: CTCCAGCAGTATCTCTGACCAGATGCTTTCCCTTCT...CAAGAAGGGGATCTTACTCAGGAAACCCTGTTTGTCTATACCCAGATGTTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR TCA 90 bp GCGTGCACCCCCATGCCTAGCTGGTTTGGCTTCATTCTGACATTTGTTTCAATACTAAAAACAGAGCTTTaGAGAGTGAAACTACTGCAC +
Preference number: 2 (lower is better)
Translates to: ACTPMPSWFGFILTFVSILKTEL*RVKLLH
Trigger: GTGCAGTAGTTTCACTCTTCAAAGCTCTGTTTTTAG...TATTGAAACAAATGTCAGAATGAAGCCAAACCAGCTAGGCATGGGGGTGCACGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000017430.12
3UTR-3UTR TCA 90 bp CAGAACATGACAGAACATCTGGGTATAGACAAACAGGGTTTCCTGAGTAAGATCAAGGCCATTAGCAGCTaGATGAAGAGTCCAGAAGCT +
Preference number: 2 (lower is better)
Translates to: QNMTEHLGIDKQGFLSKIKAISS*MKSPEA
Trigger: AGCTTCTGGACTCTTCATTCAGCTGCTAATGGCCTT...GATCTTACTCAGGAAACCCTGTTTGTCTATACCCAGATGTTCTGTCATGTTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR TCA 90 bp CAGAACATGACAGAACATCTGGGTATAGACAAACAGGGTTTCCTGAGTAAGATCAAGGCAGTGAGAATCTaGGCCAAGAACCTATGTGTG +
Preference number: 2 (lower is better)
Translates to: QNMTEHLGIDKQGFLSKIKAVRI*AKNLCV
Trigger: CACACATAGGTTCTTGGCTCAGATTCTCACTGCCTT...GATCTTACTCAGGAAACCCTGTTTGTCTATACCCAGATGTTCTGTCATGTTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR GCA 90 bp ACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTGCCAGACTGATAACAGATTCTCAAAACATAAGTaGCAGACTGATAACAGACTG +
Preference number: 2 (lower is better)
Translates to: TAKWWEHFSKHKCQTDNRFSKHK*QTDNRL
Trigger: CAGTCTGTTATCAGTCTGGCACTTATGTTTTGAGAA...TCTGTTATCAGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
ENSMUST00000170710.8
3UTR CCA 72 bp CAGGCGAGAAGGCCCGTGCCAGGCCCATACCCTTCGTaGACCTGTGAGGTCCACTGGGCCTCAGAGAGCTTA +
Preference number: 3 (lower is better)
Translates to: QARRPVPGPYPS*TCEVHWASESL
Trigger: TAAGCTCTCTGAGGCCCAGTGGACCTCACAGGTCCACGAAGGGTATGGGCCTGGCACGGGCCTTCTCGCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 72 bp CCAGAATGTGGGTCACAAGATCCTTGCTGTCCAGCGTaGGGTAGCGCTTCTCCCGGGGGAGCTGCCAGAACT +
Preference number: 3 (lower is better)
Translates to: PECGSQDPCCPA*GSASPGGAART
Trigger: AGTTCTGGCAGCTCCCCCGGGAGAAGCGCTACCTCACGCTGGACAGCAAGGATCTTGTGACCCACATTCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 72 bp AAGGCCCGTGCCAGGCCCATACCCTTCGTGGACCTGTaGGGTCCACTGGGCCTCAGAGAGCTTACAGATATC +
Preference number: 3 (lower is better)
Translates to: KARARPIPFVDL*GPLGLRELTDI
Trigger: GATATCTGTAAGCTCTCTGAGGCCCAGTGGACCTCACAGGTCCACGAAGGGTATGGGCCTGGCACGGGCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 72 bp TCCCCTTCTTGTCCTTGGGCCCAGGGACCCACCGACTaGATCAACCTGACTGCATCCAGGACACTGGTCAGA +
Preference number: 3 (lower is better)
Translates to: SPSCPWAQGPTD*INLTASRTLVR
Trigger: TCTGACCAGTGTCCTGGATGCAGTCAGGTTGATGCAGTCGGTGGGTCCCTGGGCCCAAGGACAAGAAGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp CCTGGTCAGCTGCTGAAGGTACTGCCATTCCTGGGGGCTACACCAAGGCATGACGGCAGGACAAACTCCTaGAGCACCTCATCTGGCTCC +
Preference number: 3 (lower is better)
Translates to: PGQLLKVLPFLGATPRHDGRTNS*STSSGS
Trigger: GGAGCCAGATGAGGTGCTCAAGGAGTTTGTCCTGCC...GTCATGCCTTGGTGTAGCCCCCAGGAATGGCAGTACCTTCAGCAGCTGACCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp TGGCGCCGCTCCTCAGGGCTAATGTTCTTGGCGATAGACTTTAAGAAGCGCTGCATCCCCTTCTTGTCCTaGGGCCCAGGGACCCACCGA +
Preference number: 3 (lower is better)
Translates to: WRRSSGLMFLAIDFKKRCIPFLS*GPGTHR
Trigger: TCGGTGGGTCCCTGGGCCCAAGGACAAGAAGGGGAT...GCAGCGCTTCTTAAAGTCTATCGCCAAGAACATTAGCCCTGAGGAGCGGCGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 72 bp GTCCTTGGGCCCAGGGACCCACCGACTGCATCAACCTaGCTGCATCCAGGACACTGGTCAGACTGTTACAGA +
Preference number: 3 (lower is better)
Translates to: VLGPRDPPTAST*LHPGHWSDCYR
Trigger: TCTGTAACAGTCTGACCAGTGTCCTGGATGCAGTCAGGTTGATGCAGTCGGTGGGTCCCTGGGCCCAAGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 72 bp GTCTCAGGCCCACAGTCCAATCTAGCTGGTCTAATTTaGGGTGGAGCCAGGACAGGGACTTGGCCCAGGTGT +
Preference number: 3 (lower is better)
Translates to: VSGPQSNLAGLI*GGARTGTWPRC
Trigger: ACACCTGGGCCAAGTCCCTGTCCTGGCTCCACCGCAAATTAGACCAGCTAGATTGGACTGTGGGCCTGAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 72 bp TTGGGCCCAGGGACCCACCGACTGCATCAACCTGACTaGATCCAGGACACTGGTCAGACTGTTACAGAGGAG +
Preference number: 3 (lower is better)
Translates to: LGPGTHRLHQPD*IQDTGQTVTEE
Trigger: CTCCTCTGTAACAGTCTGACCAGTGTCCTGGATGCAGTCAGGTTGATGCAGTCGGTGGGTCCCTGGGCCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp TTCTTCACCACAACTTCTGGGTTCAGGATCACCAGGTaGGCCACGGAGGCCACAGCTTTAGCCAGGCCCTGT +
Preference number: 3 (lower is better)
Translates to: FFTTTSGFRITR*ATEATALARPC
Trigger: ACAGGGCCTGGCTAAAGCTGTGGCCTCCGTGGCCCACCTGGTGATCCTGAACCCAGAAGTTGTGGTGAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp TGGCGCCGCTCCTCAGGGCTAATGTTCTTGGCGATAGACTTTAAGAAGCGCTGCTCTGCCTCCTTTACCTaGTCTGCCAGGGCCTGTCGA +
Preference number: 3 (lower is better)
Translates to: WRRSSGLMFLAIDFKKRCSASFT*SARACR
Trigger: TCGACAGGCCCTGGCAGACAAGGTAAAGGAGGCAGA...GCAGCGCTTCTTAAAGTCTATCGCCAAGAACATTAGCCCTGAGGAGCGGCGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 72 bp CTTCTTCCAGGCAAAGGGCTGGGAATGTGCTGTGGCTaGGGAGATCTCCTTCAAGGCCTCCACAATGGGCTG +
Preference number: 3 (lower is better)
Translates to: LLPGKGLGMCCG*GDLLQGLHNGL
Trigger: CAGCCCATTGTGGAGGCCTTGAAGGAGATCTCCTCAGCCACAGCACATTCCCAGCCCTTTGCCTGGAAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 72 bp AAGGGAAAGCATCTGGTCAGAGATACTGCTGGAGACTaGACAGCACTCCATCCAGGCGAGAAGGCCCGTGCC +
Preference number: 3 (lower is better)
Translates to: KGKHLVRDTAGD*TALHPGEKARA
Trigger: GGCACGGGCCTTCTCGCCTGGATGGAGTGCTGTTCAGTCTCCAGCAGTATCTCTGACCAGATGCTTTCCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp GAGGATGGCAAGTATTTATGGGCCATCGTCCTGAACTaGGAAAGCAAGGGGTCCTGCTGGTCGCCCTTGTGC +
Preference number: 3 (lower is better)
Translates to: EDGKYLWAIVLN*ESKGSCWSPLC
Trigger: GCACAAGGGCGACCAGCAGGACCCCTTGCTTTCCCAGTTCAGGACGATGGCCCATAAATACTTGCCATCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp TCTGCCTCCTTTACCTTGTCTGCCAGGGCCTGTCGATaGTATGGGTTCTGGGTGTCCGAGTTCCACACAGAG +
Preference number: 3 (lower is better)
Translates to: SASFTLSARACR*YGFWVSEFHTE
Trigger: CTCTGTGTGGAACTCGGACACCCAGAACCCATACCATCGACAGGCCCTGGCAGACAAGGTAAAGGAGGCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp ATCTGGCTCCAGAAGAGCAGCCACTGGAATCCCCTGTaGCTTCACAGGATTCGTCAGGCAGCTTACCAGCTC +
Preference number: 3 (lower is better)
Translates to: IWLQKSSHWNPL*LHRIRQAAYQL
Trigger: GAGCTGGTAAGCTGCCTGACGAATCCTGTGAAGCCACAGGGGATTCCAGTGGCTGCTCTTCTGGAGCCAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp CTTGAGCACCTCATCTGGCTCCAGAAGAGCAGCCACTaGAATCCCCTGTGGCTTCACAGGATTCGTCAGGCA +
Preference number: 3 (lower is better)
Translates to: LEHLIWLQKSSH*NPLWLHRIRQA
Trigger: TGCCTGACGAATCCTGTGAAGCCACAGGGGATTCCAGTGGCTGCTCTTCTGGAGCCAGATGAGGTGCTCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp CAATACTCTTCCAGGCCTGCATTGGCTTCGAGGGTCTaGATGAAGAGCTTCAGACTCAGGCCCACCTCCTCC +
Preference number: 3 (lower is better)
Translates to: QYSSRPALASRV*MKSFRLRPTSS
Trigger: GGAGGAGGTGGGCCTGAGTCTGAAGCTCTTCATCCAGACCCTCGAAGCCAATGCAGGCCTGGAAGAGTATTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 72 bp CATCTGAGGATGGCAAGTATTTATGGGCCATCGTCCTaGACTGGGAAAGCAAGGGGTCCTGCTGGTCGCCCT +
Preference number: 3 (lower is better)
Translates to: HLRMASIYGPSS*TGKARGPAGRP
Trigger: AGGGCGACCAGCAGGACCCCTTGCTTTCCCAGTTCAGGACGATGGCCCATAAATACTTGCCATCCTCAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp CAATCAGACTTGGTCAACTGTACCAGGGCTTTGGGGTaGAACAGCTGCTCAGCCATCAAGAAGCCCCCATGC +
Preference number: 3 (lower is better)
Translates to: QSDLVNCTRALG*NSCSAIKKPPC
Trigger: GCATGGGGGCTTCTTGATGGCTGAGCAGCTGTTCCACCCCAAAGCCCTGGTACAGTTGACCAAGTCTGATTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp GTTCCCAATCAGACTTGGTCAACTGTACCAGGGCTTTaGGGTGGAACAGCTGCTCAGCCATCAAGAAGCCCC +
Preference number: 3 (lower is better)
Translates to: VPNQTWSTVPGL*GGTAAQPSRSP
Trigger: GGGGCTTCTTGATGGCTGAGCAGCTGTTCCACCCCAAAGCCCTGGTACAGTTGACCAAGTCTGATTGGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp CCACAATGGGCTGTCCCACGTGTTCCCAATCAGACTTaGTCAACTGTACCAGGGCTTTGGGGTGGAACAGCT +
Preference number: 3 (lower is better)
Translates to: PQWAVPRVPNQT*STVPGLWGGTA
Trigger: AGCTGTTCCACCCCAAAGCCCTGGTACAGTTGACCAAGTCTGATTGGGAACACGTGGGACAGCCCATTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp CTGTGGCTGAGGAGATCTCCTTCAAGGCCTCCACAATaGGCTGTCCCACGTGTTCCCAATCAGACTTGGTCA +
Preference number: 3 (lower is better)
Translates to: LWLRRSPSRPPQ*AVPRVPNQTWS
Trigger: TGACCAAGTCTGATTGGGAACACGTGGGACAGCCCATTGTGGAGGCCTTGAAGGAGATCTCCTCAGCCACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp GCTAGTTTGTCTAGGTACACGGTGGCCGACACCTCCTaGGTGTCATCCTCCAGAAGTGCAAACACACTCAGC +
Preference number: 3 (lower is better)
Translates to: ASLSRYTVADTS*VSSSRSANTLS
Trigger: GCTGAGTGTGTTTGCACTTCTGGAGGATGACACCCAGGAGGTGTCGGCCACCGTGTACCTAGACAAACTAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp ACCTTGTCTGCCAGGGCCTGTCGATGGTATGGGTTCTaGGTGTCCGAGTTCCACACAGAGATCACTGTAGCT +
Preference number: 3 (lower is better)
Translates to: TLSARACRWYGF*VSEFHTEITVA
Trigger: AGCTACAGTGATCTCTGTGTGGAACTCGGACACCCAGAACCCATACCATCGACAGGCCCTGGCAGACAAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp CTCCTTTACCTTGTCTGCCAGGGCCTGTCGATGGTATaGGTTCTGGGTGTCCGAGTTCCACACAGAGATCAC +
Preference number: 3 (lower is better)
Translates to: LLYLVCQGLSMV*VLGVRVPHRDH
Trigger: GTGATCTCTGTGTGGAACTCGGACACCCAGAACCCATACCATCGACAGGCCCTGGCAGACAAGGTAAAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp CAAGAAAGGCAGGACAAACTCCTTGAGCACCTCATCTaGCTCCAGAAGAGCAGCCACTGGAATCCCCTGTGG +
Preference number: 3 (lower is better)
Translates to: QERQDKLLEHLI*LQKSSHWNPLW
Trigger: CCACAGGGGATTCCAGTGGCTGCTCTTCTGGAGCCAGATGAGGTGCTCAAGGAGTTTGTCCTGCCTTTCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 72 bp GAGCGGCCAATGGTGGTAGGCAAGGCCATTAGCAGCTaGATGAAGAGTCCAGAAGCTTCCAGAGACTTGAGC +
Preference number: 3 (lower is better)
Translates to: ERPMVVGKAISS*MKSPEASRDLS
Trigger: GCTCAAGTCTCTGGAAGCTTCTGGACTCTTCATTCAGCTGCTAATGGCCTTGCCTACCACCATTGGCCGCTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 72 bp AGAAGCTGTTTCTCCAATAGCTTCCTGGTCAGCTGCTaGAGGTACTGCCATTCCTGGGGGCTACACCAAGGC +
Preference number: 3 (lower is better)
Translates to: RSCFSNSFLVSC*RYCHSWGLHQG
Trigger: GCCTTGGTGTAGCCCCCAGGAATGGCAGTACCTTCAGCAGCTGACCAGGAAGCTATTGGAGAAACAGCTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 72 bp TTGGTCAACTGTACCAGGGCTTTGGGGTGGAACAGCTaGTCAGCCATCAAGAAGCCCCCATGCAGAATAGTC +
Preference number: 3 (lower is better)
Translates to: LVNCTRALGWNS*SAIKKPPCRIV
Trigger: GACTATTCTGCATGGGGGCTTCTTGATGGCTGAGCAGCTGTTCCACCCCAAAGCCCTGGTACAGTTGACCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 72 bp GGGATCATGTTGCCCACGGAGAAGAATACATCTTCCTaGCACCGAGTATCAGTGTCAGAAGGGCTGACAGGG +
Preference number: 3 (lower is better)
Translates to: GIMLPTEKNTSS*HRVSVSEGLTG
Trigger: CCCTGTCAGCCCTTCTGACACTGATACTCGGTGGCAGGAAGATGTATTCTTCTCCGTGGGCAACATGATCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 72 bp CACAGCTTTAGCCAGGCCCTGTTCAGAGGTACTCTGTaGGAGCTGGTTAAACGTCGTGTTGAGGTCTTCCTG +
Preference number: 3 (lower is better)
Translates to: HSFSQALFRGTL*ELVKRRVEVFL
Trigger: CAGGAAGACCTCAACACGACGTTTAACCAGCTCGCACAGAGTACCTCTGAACAGGGCCTGGCTAAAGCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp GGGGTGTCCAGACTCACCAACGGAGTCAGGATCGAGTaGCTCTCCCTTTTCATCAAGTCTTCTAAGTCTGGC +
Preference number: 3 (lower is better)
Translates to: GVSRLTNGVRIE*LSLFIKSSKSG
Trigger: GCCAGACTTAGAAGACTTGATGAAAAGGGAGAGCCACTCGATCCTGACTCCGTTGGTGAGTCTGGACACCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
3UTR CCA 72 bp CCAGGCCCATACCCTTCGTGGACCTGTGAGGTCCACTaGGCCTCAGAGAGCTTACAGATATCAAAAAGGGTA +
Preference number: 3 (lower is better)
Translates to: PGPYPSWTCEVH*ASESLQISKRV
Trigger: TACCCTTTTTGATATCTGTAAGCTCTCTGAGGCCCAGTGGACCTCACAGGTCCACGAAGGGTATGGGCCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp TCACCAGAAGGGAAAGCATCTGGTCAGAGATACTGCTaGAGACTGAACAGCACTCCATCCAGGCGAGAAGGC +
Preference number: 3 (lower is better)
Translates to: SPEGKASGQRYC*RLNSTPSRREG
Trigger: GCCTTCTCGCCTGGATGGAGTGCTGTTCAGTCTCCAGCAGTATCTCTGACCAGATGCTTTCCCTTCTGGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp GAAGGGAAAGCATCTGGTCAGAGATACTGCTGGAGACTGAACAGCACTCCATCCTCCTGCTGGTCGCCCTaGTGCTTCATCATTTCCCAC +
Preference number: 3 (lower is better)
Translates to: EGKASGQRYCWRLNSTPSSCWSP*CFIISH
Trigger: GTGGGAAATGATGAAGCACAAGGGCGACCAGCAGGA...GGATGGAGTGCTGTTCAGTCTCCAGCAGTATCTCTGACCAGATGCTTTCCCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 72 bp CAAAGCAAATTTCATGTCCATCAGGGTCAGCCAGGATaGCCACTTGCACTGTGGCTTTCCCTGGGGTGTCCA +
Preference number: 3 (lower is better)
Translates to: QSKFHVHQGQPG*PLALWLSLGCP
Trigger: TGGACACCCCAGGGAAAGCCACAGTGCAAGTGGTCATCCTGGCTGACCCTGATGGACATGAAATTTGCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
3UTR TCA 72 bp CCATGTCCAACATCAAGAAAGGCAGGACAAACTCCTTaGGCACCTCATCTGGCTCCAGAAGAGCAGCCACTG +
Preference number: 3 (lower is better)
Translates to: PCPTSRKAGQTP*APHLAPEEQPL
Trigger: CAGTGGCTGCTCTTCTGGAGCCAGATGAGGTGCTCAAGGAGTTTGTCCTGCCTTTCTTGATGTTGGACATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp GGCCTGTCGATGGTATGGGTTCTGGGTGTCCGAGTTCCACACAGAGATCACTGTATGGTAGGGATCATGTaGCCCACGGAGAAGAATACA +
Preference number: 3 (lower is better)
Translates to: GLSMVWVLGVRVPHRDHCMVGIM*PTEKNT
Trigger: TGTATTCTTCTCCGTGGGCAACATGATCCCTACCAT...ACAGTGATCTCTGTGTGGAACTCGGACACCCAGAACCCATACCATCGACAGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp TGGCGCCGCTCCTCAGGGCTAATGTTCTTGGCGATAGACTTTAAGAAGCGCTGCACATGGATTTGCCCCTaGTTCTTCCGTGAACTTCAG +
Preference number: 3 (lower is better)
Translates to: WRRSSGLMFLAIDFKKRCTWICP*FFRELQ
Trigger: CTGAAGTTCACGGAAGAACAAGGGGCAAATCCATGT...GCAGCGCTTCTTAAAGTCTATCGCCAAGAACATTAGCCCTGAGGAGCGGCGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp GAGGAGTTCCAGAATGTGGGTCACAAGATCCTTGCTGTCCAGCGTGAGGTAGCGTTGGGTGTGGAGAACTaGGTCCAGACAGTTTCTTTG +
Preference number: 3 (lower is better)
Translates to: EEFQNVGHKILAVQREVALGVEN*VQTVSL
Trigger: CAAAGAAACTGTCTGGACCAAGTTCTCCACACCCAA...CGCTACCTCACGCTGGACAGCAAGGATCTTGTGACCCACATTCTGGAACTCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp AGACTCACCAACGGAGTCAGGATCGAGTGGCTCTCCCTTTTCATCAAGTCTTCTGCCCAGCAAAGCTCGTaGCTTTTCCTCATCTTGCTC +
Preference number: 3 (lower is better)
Translates to: RLTNGVRIEWLSLFIKSSAQQSS*LFLILL
Trigger: GAGCAAGATGAGGAAAAGCAACGAGCTTTGCTGGGC...AGAAGACTTGATGAAAAGGGAGAGCCACTCGATCCTGACTCCGTTGGTGAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
3UTR TCA 72 bp GCCGGTAAGTGTCATAATTTGTTCCCTGACTGCTGTTaGGCATGTCCTGCAGTTCTGCACCCCACTCTTGCA +
Preference number: 3 (lower is better)
Translates to: AGKCHNLFPDCC*ACPAVLHPTLA
Trigger: TGCAAGAGTGGGGTGCAGAACTGCAGGACATGCTCAACAGCAGTCAGGGAACAAATTATGACACTTACCGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 72 bp AAGGCCACATCCTTGGAAGATGTGTCAACAGTCATGTaGTCCAGGAAGCTCTGTAGTTCTGAGCGGCCAATG +
Preference number: 3 (lower is better)
Translates to: KATSLEDVSTVM*SRKLCSSERPM
Trigger: CATTGGCCGCTCAGAACTACAGAGCTTCCTGGAGCACATGACTGTTGACACATCTTCCAAGGATGTGGCCTT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp GCTTCCAGAGACTTGAGCAGCTCAAAAAGGACTGTGTaGTTGATGGTAGGGATCATGTTGCCCACGGAGAAG +
Preference number: 3 (lower is better)
Translates to: ASRDLSSSKRTV*LMVGIMLPTEK
Trigger: CTTCTCCGTGGGCAACATGATCCCTACCATCAACCACACAGTCCTTTTTGAGCTGCTCAAGTCTCTGGAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp AAGTTCTTTAGTCTCAGGCCCACAGTCCAATCTAGCTaGTCTAATTTGCGGTGGAGCCAGGACAGGGACTTG +
Preference number: 3 (lower is better)
Translates to: KFFSLRPTVQSS*SNLRWSQDRDL
Trigger: CAAGTCCCTGTCCTGGCTCCACCGCAAATTAGACCAGCTAGATTGGACTGTGGGCCTGAGACTAAAGAACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp CCCACATCCATCACCAGAAGGGAAAGCATCTGGTCAGAGATACTGCTGGAGACTGAAGCTTCCAGAGACTaGAGCAGCTCAAAAAGGACT +
Preference number: 3 (lower is better)
Translates to: PTSITRRESIWSEILLETEASRD*SSSKRT
Trigger: AGTCCTTTTTGAGCTGCTCAAGTCTCTGGAAGCTTC...AGTCTCCAGCAGTATCTCTGACCAGATGCTTTCCCTTCTGGTGATGGATGTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp TGGGTGTCCGAGTTCCACACAGAGATCACTGTAGCTAGTTTGTCTAGGTACACGGGACAGGATTCTCTTTaGGATCTGCTTCAGCCCGTT +
Preference number: 3 (lower is better)
Translates to: WVSEFHTEITVASLSRYTGQDSL*DLLQPV
Trigger: AACGGGCTGAAGCAGATCCAAAAGAGAATCCTGTCC...CGTGTACCTAGACAAACTAGCTACAGTGATCTCTGTGTGGAACTCGGACACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp TCTTTAGTCTCAGGCCCACAGTCCAATCTAGCTGGTCTAATTTGCGGTGGAGCCAACTGCTTCTCTTCTTaGGGTGTGGAGAACTTGGTC +
Preference number: 3 (lower is better)
Translates to: SLVSGPQSNLAGLICGGANCFSS*GVENLV
Trigger: GACCAAGTTCTCCACACCCAAAGAAGAGAAGCAGTT...GGCTCCACCGCAAATTAGACCAGCTAGATTGGACTGTGGGCCTGAGACTAAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp CTGCACAGACCTCCTATGCAGGACACAGCCAAGTGGTaGGAGCATTTCTCAAAACATAAGTGCCAGACTGAT +
Preference number: 3 (lower is better)
Translates to: LHRPPMQDTAKW*EHFSKHKCQTD
Trigger: ATCAGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGGAGGTCTGTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
ENSMUST00000170710.8
3UTR CCA 72 bp CTACTGCACAGACCTCCTATGCAGGACACAGCCAAGTaGTGGGAGCATTTCTCAAAACATAAGTGCCAGACT +
Preference number: 3 (lower is better)
Translates to: LLHRPPMQDTAK*WEHFSKHKCQT
Trigger: AGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGGAGGTCTGTGCAGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
ENSMUST00000170710.8
3UTR CCA 72 bp CAACATGGCCAAAAGAGGCATGGTGGGACCCACATCTaGGTCAGACTTAAACCTCTTTGGAGGATGGGAAAA +
Preference number: 3 (lower is better)
Translates to: QHGQKRHGGTHI*VRLKPLWRMGK
Trigger: TTTTCCCATCCTCCAAAGAGGTTTAAGTCTGACCCAGATGTGGGTCCCACCATGCCTCTTTTGGCCATGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp ACACTGGTCAGACTGTTACAGAGGAGTTTGACCACATaGCTCCAACCGTCCAAAGGAAGCCAGTTACAACAG +
Preference number: 3 (lower is better)
Translates to: TLVRLLQRSLTT*LQPSKGSQLQQ
Trigger: CTGTTGTAACTGGCTTCCTTTGGACGGTTGGAGCCATGTGGTCAAACTCCTCTGTAACAGTCTGACCAGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp GCGATAGACTTTAAGAAGCGCTGCTCGTCTACCTTCTaGAGCAAGGAGCTGACAGAAGGGTTGCTTTTGCTT +
Preference number: 3 (lower is better)
Translates to: AIDFKKRCSSTF*SKELTEGLLLL
Trigger: AAGCAAAAGCAACCCTTCTGTCAGCTCCTTGCTCCAGAAGGTAGACGAGCAGCGCTTCTTAAAGTCTATCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp GAAAAGCTTCATCCCCAACAAAGCAAATTTCATGTCCATCAGGGTCAGCCAGGAGGCATTGCTGACAGCTaGGCTAGAAGCAAGCGTGAT +
Preference number: 3 (lower is better)
Translates to: EKLHPQQSKFHVHQGQPGGIADS*ARSKRD
Trigger: ATCACGCTTGCTTCTAGCCAAGCTGTCAGCAATGCC...TCCTGGCTGACCCTGATGGACATGAAATTTGCTTTGTTGGGGATGAAGCTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
3UTR-3UTR CAA 90 bp AGACTGTTACAGAGGAGTTTGACCACATGGCTCCAACCGTCCAAAGGAAGCCAGGTCCAGACAGTTTCTTaGAGGCAAGACACCATGAAA +
Preference number: 3 (lower is better)
Translates to: RLLQRSLTTWLQPSKGSQVQTVS*RQDTMK
Trigger: TTTCATGGTGTCTTGCCTCAAAGAAACTGTCTGGAC...CTGGCTTCCTTTGGACGGTTGGAGCCATGTGGTCAAACTCCTCTGTAACAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp CAGAACATGACAGAACATCTGGGTATAGACAAACAGGGTTTCCTGAGTAAGATCTCTTCCAGGCCTGCATaGGCTTCGAGGGTCTGGATG +
Preference number: 3 (lower is better)
Translates to: QNMTEHLGIDKQGFLSKISSRPA*ASRVWM
Trigger: CATCCAGACCCTCGAAGCCAATGCAGGCCTGGAAGA...GATCTTACTCAGGAAACCCTGTTTGTCTATACCCAGATGTTCTGTCATGTTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 72 bp TTCCTGAAAACCCTCCAAGTAATCAGACAACCTGTCTaGGAGACCCTTTGGCCCCAAATAATGCAGGACACC +
Preference number: 3 (lower is better)
Translates to: FLKTLQVIRQPV*ETLWPQIMQDT
Trigger: GGTGTCCTGCATTATTTGGGGCCAAAGGGTCTCTCAGACAGGTTGTCTGATTACTTGGAGGGTTTTCAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 72 bp ATAGTTTTGTTCTGCCCTCAACAGGTCAGAAGTTGTTaGTCTTTTGTAGCAGGGTTTGGCGCCGCTCCTCAG +
Preference number: 3 (lower is better)
Translates to: IVLFCPQQVRSC*SFVAGFGAAPQ
Trigger: CTGAGGAGCGGCGCCAAACCCTGCTACAAAAGATCAACAACTTCTGACCTGTTGAGGGCAGAACAAAACTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 72 bp CACTTCATTCCAAGGGACAGGATTCTCTTTTGGATCTaGTTCAGCCCGTTAAGCAACATGGCCAAAAGAGGC +
Preference number: 3 (lower is better)
Translates to: HFIPRDRILFWI*FSPLSNMAKRG
Trigger: GCCTCTTTTGGCCATGTTGCTTAACGGGCTGAAGCAGATCCAAAAGAGAATCCTGTCCCTTGGAATGAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp AAAAGCTTCATCCCCAACAAAGCAAATTTCATGTCCATCAGGGTCAGCCAGGATTCCAGCTTCCTGGCATaGCTGACAGCTTGGCTAGAA +
Preference number: 3 (lower is better)
Translates to: KSFIPNKANFMSIRVSQDSSFLA*LTAWLE
Trigger: TTCTAGCCAAGCTGTCAGCAATGCCAGGAAGCTGGA...ATCCTGGCTGACCCTGATGGACATGAAATTTGCTTTGTTGGGGATGAAGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
3UTR-3UTR CAA 90 bp CAGAACATGACAGAACATCTGGGTATAGACAAACAGGGTTTCCTGAGTAAGATCCTGAAGAGAGACCTGTaGTTAACCAGGCAGGCAACC +
Preference number: 3 (lower is better)
Translates to: QNMTEHLGIDKQGFLSKILKRDL*LTRQAT
Trigger: GGTTGCCTGCCTGGTTAACAACAGGTCTCTCTTCAG...GATCTTACTCAGGAAACCCTGTTTGTCTATACCCAGATGTTCTGTCATGTTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 72 bp AGACCTGTTGTTAACCAGGCAGGCAACCCACTCGTCTaGAAAGGCCCACTTCTTCTCAGAAGCAAAAATGTA +
Preference number: 3 (lower is better)
Translates to: RPVVNQAGNPLV*KGPLLLRSKNV
Trigger: TACATTTTTGCTTCTGAGAAGAAGTGGGCCTTTTCAGACGAGTGGGTTGCCTGCCTGGTTAACAACAGGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 72 bp CAGAGAGCTGAAGTTCCTGGGCAAAAGGCTTCAGGTTaGGCAGGGGAACAAACTGAATATACTCTAGACTGT +
Preference number: 3 (lower is better)
Translates to: QRAEVPGQKASG*AGEQTEYTLDC
Trigger: ACAGTCTAGAGTATATTCAGTTTGTTCCCCTGCTCAACCTGAAGCCTTTTGCCCAGGAACTTCAGCTCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 72 bp TTTGAGGCAAGACACCATGAAACTGGTACATGGATTTaGCCCTTGTTCTTCCGTGAACTTCAGAGCAGGGAA +
Preference number: 3 (lower is better)
Translates to: FEARHHETGTWI*PLFFRELQSRE
Trigger: TTCCCTGCTCTGAAGTTCACGGAAGAACAAGGGGCAAATCCATGTACCAGTTTCATGGTGTCTTGCCTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 72 bp GTTCTTATAACTTTGTTTGTTCTTAGCTCTGGGCCCTaGAGAAACACCACGGTGGACGGAGGCATAGTTTTG +
Preference number: 3 (lower is better)
Translates to: VLITLFVLSSGP*RNTTVDGGIVL
Trigger: CAAAACTATGCCTCCGTCCACCGTGGTGTTTCTGCAGGGCCCAGAGCTAAGAACAAACAAAGTTATAAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp GTGCTGGGATTAAAGGCGTGCACCCCCATGCCTAGCTaGTTTGGCTTCATTCTGACATTTGTTTCAATAGTA +
Preference number: 3 (lower is better)
Translates to: VLGLKACTPMPS*FGFILTFVSIV
Trigger: TACTATTGAAACAAATGTCAGAATGAAGCCAAACCAGCTAGGCATGGGGGTGCACGCCTTTAATCCCAGCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017430.12
3UTR CCA 72 bp GGCCTCAGAGAGCTTACAGATATCAAAAAGGGTAGCTaGCACCTCACACTTGAAGTGGCCTTCAAAGAAGTT +
Preference number: 3 (lower is better)
Translates to: GLRELTDIKKGS*HLTLEVAFKEV
Trigger: AACTTCTTTGAAGGCCACTTCAAGTGTGAGGTGCCAGCTACCCTTTTTGATATCTGTAAGCTCTCTGAGGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp GACACTGGTCAGACTGTTACAGAGGAGTTTGACCACATGGCTCCAACCGTCCAAGAAAGAACTTTATTTTaGTCTGGAAGAGAGAGGTCT +
Preference number: 3 (lower is better)
Translates to: DTGQTVTEEFDHMAPTVQERTLF*SGRERS
Trigger: AGACCTCTCTCTTCCAGACAAAAATAAAGTTCTTTC...TTGGACGGTTGGAGCCATGTGGTCAAACTCCTCTGTAACAGTCTGACCAGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR GCA 72 bp ACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTaGCAGACTGATAACAGACTGGACTGGAGATGTAAG +
Preference number: 3 (lower is better)
Translates to: TAKWWEHFSKHK*QTDNRLDWRCK
Trigger: CTTACATCTCCAGTCCAGTCTGTTATCAGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
ENSMUST00000170710.8
3UTR CCA 72 bp CCCACATCTGGGTCAGACTTAAACCTCTTTGGAGGATaGGAAAACTCATCTGAGGATGGCAAGTATTTATGG +
Preference number: 3 (lower is better)
Translates to: PTSGSDLNLFGG*ENSSEDGKYLW
Trigger: CCATAAATACTTGCCATCCTCAGATGAGTTTTCCCATCCTCCAAAGAGGTTTAAGTCTGACCCAGATGTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CCA 72 bp ATATCAAAAAGGGTAGCTGGCACCTCACACTTGAAGTaGCCTTCAAAGAAGTTCTTTAGTCTCAGGCCCACA +
Preference number: 3 (lower is better)
Translates to: ISKRVAGTSHLK*PSKKFFSLRPT
Trigger: TGTGGGCCTGAGACTAAAGAACTTCTTTGAAGGCCACTTCAAGTGTGAGGTGCCAGCTACCCTTTTTGATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR TCA 72 bp AGACTTAAACCTCTTTGGAGGATGGGAAAACTCATCTaGGGATGGCAAGTATTTATGGGCCATCGTCCTGAA +
Preference number: 3 (lower is better)
Translates to: RLKPLWRMGKLI*GWQVFMGHRPE
Trigger: TTCAGGACGATGGCCCATAAATACTTGCCATCCTCAGATGAGTTTTCCCATCCTCCAAAGAGGTTTAAGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp CTTACACTGGTTATCAGCGTAGCCCAGCAAAGCTCGTTGCTTTTCCTCATCTTGTCTAAAAACAGAGCTTaGAAGAGTGAAACTACTGCA +
Preference number: 3 (lower is better)
Translates to: LTLVISVAQQSSLLFLILSKNRA*KSETTA
Trigger: TGCAGTAGTTTCACTCTTCAAAGCTCTGTTTTTAGA...CAAGATGAGGAAAAGCAACGAGCTTTGCTGGGCTACGCTGATAACCAGTGTAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
3UTR-3UTR CAA 90 bp CAGAACATGACAGAACATCTGGGTATAGACAAACAGGGTTTCCTGAGTAAGATCAAAAGGACTGTGTGGTaGATGGTAGGGATCATGTTG +
Preference number: 3 (lower is better)
Translates to: QNMTEHLGIDKQGFLSKIKRTVW*MVGIML
Trigger: CAACATGATCCCTACCATCAACCACACAGTCCTTTT...GATCTTACTCAGGAAACCCTGTTTGTCTATACCCAGATGTTCTGTCATGTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR-3UTR CAA 90 bp TCAGATTTTCCTCCAGCCCCAACCAAGAGTAATATTCCATATAGTTGTCTCAGTTTTTGTCTGCTTCCATaGCATCATCCAATAATTTGC +
Preference number: 3 (lower is better)
Translates to: SDFPPAPTKSNIPYSCLSFCLLP*HHPIIC
Trigger: GCAAATTATTGGATGATGCAATGGAAGCAGACAAAA...ACTGAGACAACTATATGGAATATTACTCTTGGTTGGGGCTGGAGGAAAATCTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
3UTR CAA 72 bp AGTCTCAGGCCCACAGTCCAATCTAGCTGGTCTAATTaGCGGTGGAGCCAGGACAGGGACTTGGCCCAGGTG +
Preference number: 4 (lower is better)
Translates to: SLRPTVQSSWSN*RWSQDRDLAQV
Trigger: CACCTGGGCCAAGTCCCTGTCCTGGCTCCACCGCAAATTAGACCAGCTAGATTGGACTGTGGGCCTGAGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR TCA 90 bp CCTTGGGCCCAGGGACCCACCGACTGCATCAACCTGACTGCATCCAGGACACTGAGCGGTTCTTCACTTTaGAAACGAAGTGCAGAGCTC +
Preference number: 4 (lower is better)
Translates to: PWAQGPTDCINLTASRTLSGSSL*KRSAEL
Trigger: GAGCTCTGCACTTCGTTTTCAAAGTGAAGAACCGCT...CAGTGTCCTGGATGCAGTCAGGTTGATGCAGTCGGTGGGTCCCTGGGCCCAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 72 bp GAGGTGAGACTCACATCTCGCTCTGCCTCCTTTACCTaGTCTGCCAGGGCCTGTCGATGGTATGGGTTCTGG +
Preference number: 4 (lower is better)
Translates to: EVRLTSRSASFT*SARACRWYGFW
Trigger: CCAGAACCCATACCATCGACAGGCCCTGGCAGACAAGGTAAAGGAGGCAGAGCGAGATGTGAGTCTCACCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 72 bp TCCACAATGGGCTGTCCCACGTGTTCCCAATCAGACTaGGTCAACTGTACCAGGGCTTTGGGGTGGAACAGC +
Preference number: 4 (lower is better)
Translates to: STMGCPTCSQSD*VNCTRALGWNS
Trigger: GCTGTTCCACCCCAAAGCCCTGGTACAGTTGACCAAGTCTGATTGGGAACACGTGGGACAGCCCATTGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 72 bp GTGTCCGAGTTCCACACAGAGATCACTGTAGCTAGTTaGTCTAGGTACACGGTGGCCGACACCTCCTGGGTG +
Preference number: 4 (lower is better)
Translates to: VSEFHTEITVAS*SRYTVADTSWV
Trigger: CACCCAGGAGGTGTCGGCCACCGTGTACCTAGACAAACTAGCTACAGTGATCTCTGTGTGGAACTCGGACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 72 bp GAGCAGGTCTGCAGCCAATACTCTTCCAGGCCTGCATaGGCTTCGAGGGTCTGGATGAAGAGCTTCAGACTC +
Preference number: 4 (lower is better)
Translates to: EQVCSQYSSRPA*ASRVWMKSFRL
Trigger: GAGTCTGAAGCTCTTCATCCAGACCCTCGAAGCCAATGCAGGCCTGGAAGAGTATTGGCTGCAGACCTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 72 bp GTACTGCCATTCCTGGGGGCTACACCAAGGCATGACTaGTACCAGGGCCACCAGAAAGCCCTTGCTAAACAG +
Preference number: 4 (lower is better)
Translates to: VLPFLGATPRHD*YQGHQKALAKQ
Trigger: CTGTTTAGCAAGGGCTTTCTGGTGGCCCTGGTACAAGTCATGCCTTGGTGTAGCCCCCAGGAATGGCAGTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 72 bp AGCAGGGTTTGGCGCCGCTCCTCAGGGCTAATGTTCTaGGCGATAGACTTTAAGAAGCGCTGCTCGTCTACC +
Preference number: 4 (lower is better)
Translates to: SRVWRRSSGLMF*AIDFKKRCSST
Trigger: GGTAGACGAGCAGCGCTTCTTAAAGTCTATCGCCAAGAACATTAGCCCTGAGGAGCGGCGCCAAACCCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR GCA 90 bp TGGGCCACGGAGGCCACAGCTTTAGCCAGGCCCTGTTCAGAGGTACTCTGTGCGTTCAAAAATCCCTTCTaGAACTTTACTCAGTGGCCA +
Preference number: 4 (lower is better)
Translates to: WATEATALARPCSEVLCAFKNPF*NFTQWP
Trigger: TGGCCACTGAGTAAAGTTGCAGAAGGGATTTTTGAA...CGCACAGAGTACCTCTGAACAGGGCCTGGCTAAAGCTGTGGCCTCCGTGGCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR CCA 90 bp CAACCGTCCAAAGGAAGCCAGTTACAACAGCTCTGGCTGCAGAGAAACTGGAACCACTGTGGCTTTCCCTaGGGTGTCCAGACTCACCAA +
Preference number: 4 (lower is better)
Translates to: QPSKGSQLQQLWLQRNWNHCGFP*GVQTHQ
Trigger: TTGGTGAGTCTGGACACCCCAGGGAAAGCCACAGTG...GTTCCAGTTTCTCTGCAGCCAGAGCTGTTGTAACTGGCTTCCTTTGGACGGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 72 bp GCCATGGCAATGGAGGCAGTGATGTCCTCAAGGCCCTaGTCATTCAGCATTCTGCTGGTTTTCCTCAGGAAG +
Preference number: 4 (lower is better)
Translates to: AMAMEAVMSSRP*SFSILLVFLRK
Trigger: CTTCCTGAGGAAAACCAGCAGAATGCTGAATGACAAGGGCCTTGAGGACATCACTGCCTCCATTGCCATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 72 bp ATAGACAAACAGGGTTTCCTGAGTAAGATCCCCTTCTaGTCCTTGGGCCCAGGGACCCACCGACTGCATCAA +
Preference number: 4 (lower is better)
Translates to: IDKQGFLSKIPF*SLGPGTHRLHQ
Trigger: TTGATGCAGTCGGTGGGTCCCTGGGCCCAAGGACAAGAAGGGGATCTTACTCAGGAAACCCTGTTTGTCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR TCA 90 bp GGCCTCAGAGAGCTTACAGATATCAAAAAGGGTAGCTGGCACCTCACACTTGAACCAAAGGCCGCTGCATaGTCAACTGCACCCTGGATG +
Preference number: 4 (lower is better)
Translates to: GLRELTDIKKGSWHLTLEPKAAA*STAPWM
Trigger: CATCCAGGGTGCAGTTGATCATGCAGCGGCCTTTGG...TTCAAGTGTGAGGTGCCAGCTACCCTTTTTGATATCTGTAAGCTCTCTGAGGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR GCA 90 bp GTTCTTAGCTCTGGGCCCTGCAGAAACACCACGGTGGACGGAGGCATAGTTTTGATAAGGCCCATTGCATaGAGCTTTGCAGCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: VLSSGPCRNTTVDGGIVLIRPIA*SFAAFF
Trigger: GAAGAAGGCTGCAAAGCTGCATGCAATGGGCCTTAT...CAAAACTATGCCTCCGTCCACCGTGGTGTTTCTGCAGGGCCCAGAGCTAAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR TCA 90 bp AGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTGCCAGACTGATACCAAAGGCCGCTGCATaGTCAACTGCACCCTGGATG +
Preference number: 4 (lower is better)
Translates to: RTQPSGGSISQNISARLIPKAAA*STAPWM
Trigger: CATCCAGGGTGCAGTTGATCATGCAGCGGCCTTTGG...TATCAGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR CCA 90 bp GTCCTCAAGGCCCTTGTCATTCAGCATTCTGCTGGTTTTCCTCAGGAAGTCCCTGGAGTCAGGATCGAGTaGCTCTCCCTTTTCATCAAG +
Preference number: 4 (lower is better)
Translates to: VLKALVIQHSAGFPQEVPGVRIE*LSLFIK
Trigger: CTTGATGAAAAGGGAGAGCCACTCGATCCTGACTCC...AGGGACTTCCTGAGGAAAACCAGCAGAATGCTGAATGACAAGGGCCTTGAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR CCA 90 bp ATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTGCCAGACTCACTGTGGCTTTCCCTaGGGTGTCCAGACTCACCAA +
Preference number: 4 (lower is better)
Translates to: MQDTAKWWEHFSKHKCQTHCGFP*GVQTHQ
Trigger: TTGGTGAGTCTGGACACCCCAGGGAAAGCCACAGTG...AGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
3UTR CAA 72 bp TCCATGTCCAACATCAAGAAAGGCAGGACAAACTCCTaGAGCACCTCATCTGGCTCCAGAAGAGCAGCCACT +
Preference number: 4 (lower is better)
Translates to: SMSNIKKGRTNS*STSSGSRRAAT
Trigger: AGTGGCTGCTCTTCTGGAGCCAGATGAGGTGCTCAAGGAGTTTGTCCTGCCTTTCTTGATGTTGGACATGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 72 bp AGAAAGCCCTTGCTAAACAGTCTGACCTCCTCAGGATaGCCCACATCCATCACCAGAAGGGAAAGCATCTGG +
Preference number: 4 (lower is better)
Translates to: RKPLLNSLTSSG*PTSITRRESIW
Trigger: CCAGATGCTTTCCCTTCTGGTGATGGATGTGGGCAATCCTGAGGAGGTCAGACTGTTTAGCAAGGGCTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR CCA 90 bp CTGCACAGACCTCCTATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAAGCATTGCTGACAGCTTaGCTAGAAGCAAGCGTGATT +
Preference number: 4 (lower is better)
Translates to: LHRPPMQDTAKWWEHFSKALLTA*LEASVI
Trigger: AATCACGCTTGCTTCTAGCCAAGCTGTCAGCAATGC...TTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGGAGGTCTGTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR CCA 90 bp GCCAGACTGATAACAGACTGGACTGGAGATGTAAGTGCTCTTCATGTGTCTTCCTGCAACTTTACTCAGTaGCCACTCCAGCTTCCTGGC +
Preference number: 4 (lower is better)
Translates to: ARLITDWTGDVSALHVSSCNFTQ*PLQLPG
Trigger: GCCAGGAAGCTGGAGTGGCCACTGAGTAAAGTTGCA...GGAAGACACATGAAGAGCACTTACATCTCCAGTCCAGTCTGTTATCAGTCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
3UTR CAA 72 bp AGGCATAGTTTTGTTCTGCCCTCAACAGGTCAGAAGTaGTTGATCTTTTGTAGCAGGGTTTGGCGCCGCTCC +
Preference number: 4 (lower is better)
Translates to: RHSFVLPSTGQK*LIFCSRVWRRS
Trigger: GGAGCGGCGCCAAACCCTGCTACAAAAGATCAACAACTTCTGACCTGTTGAGGGCAGAACAAAACTATGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR TCA 90 bp CCTATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTGCCAGAGCGGTTCTTCACTTTaGAAACGAAGTGCAGAGCTC +
Preference number: 4 (lower is better)
Translates to: PMQDTAKWWEHFSKHKCQSGSSL*KRSAEL
Trigger: GAGCTCTGCACTTCGTTTTCAAAGTGAAGAACCGCT...CTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
CDS-3UTR TCA 90 bp GAGCATTTCTCAAAACATAAGTGCCAGACTGATAACAGACTGGACTGGAGATGTCCAAAGGCCGCTGCATaGTCAACTGCACCCTGGATG +
Preference number: 4 (lower is better)
Translates to: EHFSKHKCQTDNRLDWRCPKAAA*STAPWM
Trigger: CATCCAGGGTGCAGTTGATCATGCAGCGGCCTTTGG...ACATCTCCAGTCCAGTCTGTTATCAGTCTGGCACTTATGTTTTGAGAAATGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR GCA 90 bp CCTATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTGCCAGATAAGGCCCATTGCATaGAGCTTTGCAGCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: PMQDTAKWWEHFSKHKCQIRPIA*SFAAFF
Trigger: GAAGAAGGCTGCAAAGCTGCATGCAATGGGCCTTAT...CTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR CCA 90 bp GCGTGCACCCCCATGCCTAGCTGGTTTGGCTTCATTCTGACATTTGTTTCAATAGGAGTCAGGATCGAGTaGCTCTCCCTTTTCATCAAG +
Preference number: 4 (lower is better)
Translates to: ACTPMPSWFGFILTFVSIGVRIE*LSLFIK
Trigger: CTTGATGAAAAGGGAGAGCCACTCGATCCTGACTCC...TATTGAAACAAATGTCAGAATGAAGCCAAACCAGCTAGGCATGGGGGTGCACGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017430.12
CDS-3UTR CCA 90 bp CATAAGTGCCAGACTGATAACAGACTGGACTGGAGATGTAAGTGCTCTTCATGTCACTGTGGCTTTCCCTaGGGTGTCCAGACTCACCAA +
Preference number: 4 (lower is better)
Translates to: HKCQTDNRLDWRCKCSSCHCGFP*GVQTHQ
Trigger: TTGGTGAGTCTGGACACCCCAGGGAAAGCCACAGTG...ACATGAAGAGCACTTACATCTCCAGTCCAGTCTGTTATCAGTCTGGCACTTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR CCA 90 bp AGTGAAACTACTGCACAGACCTCCTATGCAGGACACAGCCAAGTGGTGGGAGCACTAACCCGAAGCCTTTaGTTTATTCCTCGTAGCAAA +
Preference number: 4 (lower is better)
Translates to: SETTAQTSYAGHSQVVGALTRSL*FIPRSK
Trigger: TTTGCTACGAGGAATAAACCAAAGGCTTCGGGTTAG...TGCTCCCACCACTTGGCTGTGTCCTGCATAGGAGGTCTGTGCAGTAGTTTCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
3UTR CAA 72 bp TCAAAAAGGACTGTGTGGTTGATGGTAGGGATCATGTaGCCCACGGAGAAGAATACATCTTCCTGCCACCGA +
Preference number: 4 (lower is better)
Translates to: SKRTVWLMVGIM*PTEKNTSSCHR
Trigger: TCGGTGGCAGGAAGATGTATTCTTCTCCGTGGGCAACATGATCCCTACCATCAACCACACAGTCCTTTTTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 72 bp TCCAGAGACTTGAGCAGCTCAAAAAGGACTGTGTGGTaGATGGTAGGGATCATGTTGCCCACGGAGAAGAAT +
Preference number: 4 (lower is better)
Translates to: SRDLSSSKRTVW*MVGIMLPTEKN
Trigger: ATTCTTCTCCGTGGGCAACATGATCCCTACCATCAACCACACAGTCCTTTTTGAGCTGCTCAAGTCTCTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
3UTR CAA 72 bp AGGCAGCTTACCAGCTCCAGAAACTGCTTCTCTTCTTaGGGTGTGGAGAACTTGGTCCAGACAGTTTCTTTG +
Preference number: 4 (lower is better)
Translates to: RQLTSSRNCFSS*GVENLVQTVSL
Trigger: CAAAGAAACTGTCTGGACCAAGTTCTCCACACCCAAAGAAGAGAAGCAGTTTCTGGAGCTGGTAAGCTGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR TCA 90 bp ATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTGCCAGACTAGCGGTTCTTCACTTTaGAAACGAAGTGCAGAGCTC +
Preference number: 4 (lower is better)
Translates to: MQDTAKWWEHFSKHKCQTSGSSL*KRSAEL
Trigger: GAGCTCTGCACTTCGTTTTCAAAGTGAAGAACCGCT...AGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
CDS-3UTR TCA 90 bp CTGCACAGACCTCCTATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAATCTGGCAACTCTTTCTaGGGACAAGAAAAGGCAATT +
Preference number: 4 (lower is better)
Translates to: LHRPPMQDTAKWWEHFSKSGNSF*GQEKAI
Trigger: AATTGCCTTTTCTTGTCCTCAGAAAGAGTTGCCAGA...TTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGGAGGTCTGTGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR GCA 90 bp TTAAAGGCGTGCACCCCCATGCCTAGCTGGTTTGGCTTCATTCTGACATTTGTTATAAGGCCCATTGCATaGAGCTTTGCAGCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: LKACTPMPSWFGFILTFVIRPIA*SFAAFF
Trigger: GAAGAAGGCTGCAAAGCTGCATGCAATGGGCCTTAT...AACAAATGTCAGAATGAAGCCAAACCAGCTAGGCATGGGGGTGCACGCCTTTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017430.12
CDS-3UTR GCA 90 bp AGACCTCCTATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGCATCATAAGGCCCATTaGATGCAGCTTTGCAGCCTT +
Preference number: 4 (lower is better)
Translates to: RPPMQDTAKWWEHFSKHKHHKAH*MQLCSL
Trigger: AAGGCTGCAAAGCTGCATGCAATGGGCCTTATGATG...CTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGGAGGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR GCA 90 bp AGACTCACCAACGGAGTCAGGATCGAGTGGCTCTCCCTTTTCATCAAGTCTTCTGTCAATTCCATTGCATaGAGCTTTGCAGCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: RLTNGVRIEWLSLFIKSSVNSIA*SFAAFF
Trigger: GAAGAAGGCTGCAAAGCTGCATGCAATGGAATTGAC...AGAAGACTTGATGAAAAGGGAGAGCCACTCGATCCTGACTCCGTTGGTGAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
CDS-3UTR GCA 90 bp CTGCACAGACCTCCTATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAATTCAAAAATCCCTTCTaGAACTTTACTCAGTGGCCA +
Preference number: 4 (lower is better)
Translates to: LHRPPMQDTAKWWEHFSKFKNPF*NFTQWP
Trigger: TGGCCACTGAGTAAAGTTGCAGAAGGGATTTTTGAA...TTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGGAGGTCTGTGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR GCA 90 bp CAGGATCTGACTGAGATGGGCTTCTATCCTGTAAGTAGAACTTATATCCTCCTGAGCGTGATTCCCCATTaGATGCAGCTTTGCAGCCTT +
Preference number: 4 (lower is better)
Translates to: QDLTEMGFYPVSRTYILLSVIPH*MQLCSL
Trigger: AAGGCTGCAAAGCTGCATGCAATGGGGAATCACGCT...CAGGAGGATATAAGTTCTACTTACAGGATAGAAGCCCATCTCAGTCAGATCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170590.8
CDS-3UTR CCA 90 bp ATAAGTGCCAGACTGATAACAGACTGGACTGGAGATGTAAGTGCTCTTCATGTGGGAGTCAGGATCGAGTaGCTCTCCCTTTTCATCAAG +
Preference number: 4 (lower is better)
Translates to: ISARLITDWTGDVSALHVGVRIE*LSLFIK
Trigger: CTTGATGAAAAGGGAGAGCCACTCGATCCTGACTCC...CACATGAAGAGCACTTACATCTCCAGTCCAGTCTGTTATCAGTCTGGCACTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR GCA 90 bp ACAGAACATCTGGGTATAGACAAACAGGGTTTCCTGAGTAAGATCCCCTTCTTGCATCATAAGGCCCATTaGATGCAGCTTTGCAGCCTT +
Preference number: 4 (lower is better)
Translates to: TEHLGIDKQGFLSKIPFLHHKAH*MQLCSL
Trigger: AAGGCTGCAAAGCTGCATGCAATGGGCCTTATGATG...CAAGAAGGGGATCTTACTCAGGAAACCCTGTTTGTCTATACCCAGATGTTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR GCA 90 bp CAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTGCCAGACTGATCTCGTCACTTTTGTCTaGTTCCATTGCATCATCCAA +
Preference number: 4 (lower is better)
Translates to: QDTAKWWEHFSKHKCQTDLVTFV*FHCIIQ
Trigger: TTGGATGATGCAATGGAAGCAGACAAAAGTGACGAG...ATCAGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR GCA 90 bp AGACCTCCTATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGGTATGTCAATTCCATTaGATGCAGCTTTGCAGCCTT +
Preference number: 4 (lower is better)
Translates to: RPPMQDTAKWWEHFSKHKVCQFH*MQLCSL
Trigger: AAGGCTGCAAAGCTGCATGCAATGGAATTGACATAC...CTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGGAGGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
CDS-3UTR GCA 90 bp GCTTTGAAGAGTGAAACTACTGCACAGACCTCCTATGCAGGACACAGCCAAGTGGCTTGTAGTCTCCGATaGCATAATTGTATGTCAATT +
Preference number: 4 (lower is better)
Translates to: ALKSETTAQTSYAGHSQVACSLR*HNCMSI
Trigger: AATTGACATACAATTATGGCATCGGAGACTACAAGC...CACTTGGCTGTGTCCTGCATAGGAGGTCTGTGCAGTAGTTTCACTCTTCAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
ENSMUST00000170710.8
CDS-3UTR GCA 90 bp GTGGGACCCACATCTGGGTCAGACTTAAACCTCTTTGGAGGATGGGAAAACTCAGCTTGTAGTCTCCGATaGCATAATTGTATGTCAATT +
Preference number: 4 (lower is better)
Translates to: VGPTSGSDLNLFGGWENSACSLR*HNCMSI
Trigger: AATTGACATACAATTATGGCATCGGAGACTACAAGC...TGAGTTTTCCCATCCTCCAAAGAGGTTTAAGTCTGACCCAGATGTGGGTCCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR CCA 90 bp TTCTCAAAACATAAGTGCCAGACTGATAACAGACTGGACTGGAGATGTAAGTGCGCATTGCTGACAGCTTaGCTAGAAGCAAGCGTGATT +
Preference number: 4 (lower is better)
Translates to: FSKHKCQTDNRLDWRCKCALLTA*LEASVI
Trigger: AATCACGCTTGCTTCTAGCCAAGCTGTCAGCAATGC...GCACTTACATCTCCAGTCCAGTCTGTTATCAGTCTGGCACTTATGTTTTGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR CCA 90 bp CAGAACATGACAGAACATCTGGGTATAGACAAACAGGGTTTCCTGAGTAAGATCGCATTGCTGACAGCTTaGCTAGAAGCAAGCGTGATT +
Preference number: 4 (lower is better)
Translates to: QNMTEHLGIDKQGFLSKIALLTA*LEASVI
Trigger: AATCACGCTTGCTTCTAGCCAAGCTGTCAGCAATGC...GATCTTACTCAGGAAACCCTGTTTGTCTATACCCAGATGTTCTGTCATGTTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR CCA 90 bp ATGGGCTTCTATCCTGTAAGTAGAACTTATATCCTCCTGGGGCTTCAGTTTCAAGCATTGCTGACAGCTTaGCTAGAAGCAAGCGTGATT +
Preference number: 4 (lower is better)
Translates to: MGFYPVSRTYILLGLQFQALLTA*LEASVI
Trigger: AATCACGCTTGCTTCTAGCCAAGCTGTCAGCAATGC...TTGAAACTGAAGCCCCAGGAGGATATAAGTTCTACTTACAGGATAGAAGCCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170590.8
3UTR CAA 72 bp TCTTTGGGTGTGGAGAACTTGGTCCAGACAGTTTCTTaGAGGCAAGACACCATGAAACTGGTACATGGATTT +
Preference number: 4 (lower is better)
Translates to: SLGVENLVQTVS*RQDTMKLVHGF
Trigger: AAATCCATGTACCAGTTTCATGGTGTCTTGCCTCAAAGAAACTGTCTGGACCAAGTTCTCCACACCCAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR TCA 90 bp GGCTTCTATCCTGTAAGTAGAACTTATATCCTCCTGGGGCTTCAGTTTCAAAAAAGCGGTTCTTCACTTTaGAAACGAAGTGCAGAGCTC +
Preference number: 4 (lower is better)
Translates to: GFYPVSRTYILLGLQFQKSGSSL*KRSAEL
Trigger: GAGCTCTGCACTTCGTTTTCAAAGTGAAGAACCGCT...TTTTTGAAACTGAAGCCCCAGGAGGATATAAGTTCTACTTACAGGATAGAAGCC
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000170017.8
ENSMUST00000170590.8
CDS-3UTR TCA 90 bp ACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTGCCAGACTGATAACATCTGGCAACTCTTTCTaGGGACAAGAAAAGGCAATT +
Preference number: 4 (lower is better)
Translates to: TQPSGGSISQNISARLITSGNSF*GQEKAI
Trigger: AATTGCCTTTTCTTGTCCTCAGAAAGAGTTGCCAGA...TGTTATCAGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR GCA 90 bp CAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTGCCAGACTGATGCTTGTAGTCTCCGATaGCATAATTGTATGTCAATT +
Preference number: 4 (lower is better)
Translates to: QDTAKWWEHFSKHKCQTDACSLR*HNCMSI
Trigger: AATTGACATACAATTATGGCATCGGAGACTACAAGC...ATCAGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
ENSMUST00000170710.8
CDS-3UTR CCA 90 bp CATAAGTGCCAGACTGATAACAGACTGGACTGGAGATGTAAGTGCTCTTCATGTCTAACCCGAAGCCTTTaGTTTATTCCTCGTAGCAAA +
Preference number: 4 (lower is better)
Translates to: HKCQTDNRLDWRCKCSSCLTRSL*FIPRSK
Trigger: TTTGCTACGAGGAATAAACCAAAGGCTTCGGGTTAG...ACATGAAGAGCACTTACATCTCCAGTCCAGTCTGTTATCAGTCTGGCACTTATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
3UTR CAA 72 bp TCTTGTACTCCTTTCACTGTGTACGTTCTTATAACTTaGTTTGTTCTTAGCTCTGGGCCCTGCAGAAACACC +
Preference number: 4 (lower is better)
Translates to: SCTPFTVYVLIT*FVLSSGPCRNT
Trigger: GGTGTTTCTGCAGGGCCCAGAGCTAAGAACAAACAAAGTTATAAGAACGTACACAGTGAAAGGAGTACAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR TCA 90 bp CAGAACATGACAGAACATCTGGGTATAGACAAACAGGGTTTCCTGAGTAAGATCTCTGGCAACTCTTTCTaGGGACAAGAAAAGGCAATT +
Preference number: 4 (lower is better)
Translates to: QNMTEHLGIDKQGFLSKISGNSF*GQEKAI
Trigger: AATTGCCTTTTCTTGTCCTCAGAAAGAGTTGCCAGA...GATCTTACTCAGGAAACCCTGTTTGTCTATACCCAGATGTTCTGTCATGTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR GCA 90 bp CATAAGTGCCAGACTGATAACAGACTGGACTGGAGATGTAAGTGCTCTTCATGTTTCAAAAATCCCTTCTaGAACTTTACTCAGTGGCCA +
Preference number: 4 (lower is better)
Translates to: HKCQTDNRLDWRCKCSSCFKNPF*NFTQWP
Trigger: TGGCCACTGAGTAAAGTTGCAGAAGGGATTTTTGAA...ACATGAAGAGCACTTACATCTCCAGTCCAGTCTGTTATCAGTCTGGCACTTATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR GCA 90 bp CAAAACATAAGTGCCAGACTGATAACAGACTGGACTGGAGATGTAAGTGCTCTTCTCGTCACTTTTGTCTaGTTCCATTGCATCATCCAA +
Preference number: 4 (lower is better)
Translates to: QNISARLITDWTGDVSALLVTFV*FHCIIQ
Trigger: TTGGATGATGCAATGGAAGCAGACAAAAGTGACGAG...AAGAGCACTTACATCTCCAGTCCAGTCTGTTATCAGTCTGGCACTTATGTTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR TCA 90 bp TCAGATTTTCCTCCAGCCCCAACCAAGAGTAATATTCCATATAGTTGTCTCAGTAATTCTGCAACAAAATaGTCATCCTCGGGCCCAAAT +
Preference number: 4 (lower is better)
Translates to: SDFPPAPTKSNIPYSCLSNSATK*SSSGPN
Trigger: ATTTGGGCCCGAGGATGATCATTTTGTTGCAGAATT...ACTGAGACAACTATATGGAATATTACTCTTGGTTGGGGCTGGAGGAAAATCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000017430.12
CDS-3UTR GCA 90 bp ATGGGCTTCTATCCTGTAAGTAGAACTTATATCCTCCTGGGGCTTCAGTTTCAAGCTTGTAGTCTCCGATaGCATAATTGTATGTCAATT +
Preference number: 4 (lower is better)
Translates to: MGFYPVSRTYILLGLQFQACSLR*HNCMSI
Trigger: AATTGACATACAATTATGGCATCGGAGACTACAAGC...TTGAAACTGAAGCCCCAGGAGGATATAAGTTCTACTTACAGGATAGAAGCCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
3UTR CAA 72 bp TCACTTTTGTCTGCTTCCATTGCATCATCCAATAATTaGCTTCCTTTTGGATCCATCTTAGAGAGTTCTCGA +
Preference number: 4 (lower is better)
Translates to: SLLSASIASSNN*LPFGSILESSR
Trigger: TCGAGAACTCTCTAAGATGGATCCAAAAGGAAGCAAATTATTGGATGATGCAATGGAAGCAGACAAAAGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170017.8
CDS-3UTR CAA 90 bp CCAGGGCTTTGGGGTGGAACAGCTGCTCAGCCATCAAGAAGCCCCCATGCAGAAGCCCAGCAAAGCTCGTaGCTTTTCCTCATCTTGCTC +
Preference number: 5 (lower is better)
Translates to: PGLWGGTAAQPSRSPHAEAQQSS*LFLILL
Trigger: GAGCAAGATGAGGAAAAGCAACGAGCTTTGCTGGGC...TTCTGCATGGGGGCTTCTTGATGGCTGAGCAGCTGTTCCACCCCAAAGCCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR CAA 90 bp GGGTTCTGGGTGTCCGAGTTCCACACAGAGATCACTGTAGCTAGTTTGTCTAGGGGCATTGCTGACAGCTaGGCTAGAAGCAAGCGTGAT +
Preference number: 5 (lower is better)
Translates to: GFWVSEFHTEITVASLSRGIADS*ARSKRD
Trigger: ATCACGCTTGCTTCTAGCCAAGCTGTCAGCAATGCC...CCTAGACAAACTAGCTACAGTGATCTCTGTGTGGAACTCGGACACCCAGAACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR CAA 90 bp CCCACATCCATCACCAGAAGGGAAAGCATCTGGTCAGAGATACTGCTGGAGACTTCCAGCTTCCTGGCATaGCTGACAGCTTGGCTAGAA +
Preference number: 5 (lower is better)
Translates to: PTSITRRESIWSEILLETSSFLA*LTAWLE
Trigger: TTCTAGCCAAGCTGTCAGCAATGCCAGGAAGCTGGA...AGTCTCCAGCAGTATCTCTGACCAGATGCTTTCCCTTCTGGTGATGGATGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS CCA 90 bp CGGAGAACCTGCATCCCCAGGACATCTCGAAAGAAATGCACTGTCTaGAAGCGGTTCTTCACTTTGAAAACGAAGTGCAGAGCTCGACGA +
Preference number: 5 (lower is better)
Translates to: RRTCIPRTSRKKCTV*KRFFTLKTKCRARR
Trigger: TCGTCGAGCTCTGCACTTCGTTTTCAAAGTGAAGAACCGCTTCCAGACAGTGCATTTCTTTCGAGATGTCCTGGGGATGCAGGTTCTCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000017430.12
ENSMUST00000169701.8
ENSMUST00000170017.8
ENSMUST00000170590.8
CDS-3UTR CAA 90 bp CCTATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTGCCAGGCCCAGCAAAGCTCGTaGCTTTTCCTCATCTTGCTC +
Preference number: 5 (lower is better)
Translates to: PMQDTAKWWEHFSKHKCQAQQSS*LFLILL
Trigger: GAGCAAGATGAGGAAAAGCAACGAGCTTTGCTGGGC...CTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR CAA 90 bp GCCAGACTGATAACAGACTGGACTGGAGATGTAAGTGCTCTTCATGTGTCTTCCTCCAGCTTCCTGGCATaGCTGACAGCTTGGCTAGAA +
Preference number: 5 (lower is better)
Translates to: ARLITDWTGDVSALHVSSSSFLA*LTAWLE
Trigger: TTCTAGCCAAGCTGTCAGCAATGCCAGGAAGCTGGA...GGAAGACACATGAAGAGCACTTACATCTCCAGTCCAGTCTGTTATCAGTCTGGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR CAA 90 bp GGGATCATGTTGCCCACGGAGAAGAATACATCTTCCTGCCACCGAGTATCAGTGAAGCGGTTCTTCACTTaGAAAACGAAGTGCAGAGCT +
Preference number: 5 (lower is better)
Translates to: GIMLPTEKNTSSCHRVSVKRFFT*KTKCRA
Trigger: AGCTCTGCACTTCGTTTTCAAAGTGAAGAACCGCTT...CACTGATACTCGGTGGCAGGAAGATGTATTCTTCTCCGTGGGCAACATGATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR CAA 90 bp ATAAGTGCCAGACTGATAACAGACTGGACTGGAGATGTAAGTGCTCTTCATGTGGGCATTGCTGACAGCTaGGCTAGAAGCAAGCGTGAT +
Preference number: 5 (lower is better)
Translates to: ISARLITDWTGDVSALHVGIADS*ARSKRD
Trigger: ATCACGCTTGCTTCTAGCCAAGCTGTCAGCAATGCC...CACATGAAGAGCACTTACATCTCCAGTCCAGTCTGTTATCAGTCTGGCACTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR CAA 90 bp GAGATGGGCTTCTATCCTGTAAGTAGAACTTATATCCTCCTGGGGCTTCAGTTTTCCAGCTTCCTGGCATaGCTGACAGCTTGGCTAGAA +
Preference number: 5 (lower is better)
Translates to: EMGFYPVSRTYILLGLQFSSFLA*LTAWLE
Trigger: TTCTAGCCAAGCTGTCAGCAATGCCAGGAAGCTGGA...AAACTGAAGCCCCAGGAGGATATAAGTTCTACTTACAGGATAGAAGCCCATCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170590.8
CDS-3UTR CAA 90 bp GAGATGGGCTTCTATCCTGTAAGTAGAACTTATATCCTCCTGGGGCTTCAGTTTAAGCGTGATTCCCCATaGCATGCAGCTTTGCAGCCT +
Preference number: 5 (lower is better)
Translates to: EMGFYPVSRTYILLGLQFKRDSP*HAALQP
Trigger: AGGCTGCAAAGCTGCATGCAATGGGGAATCACGCTT...AAACTGAAGCCCCAGGAGGATATAAGTTCTACTTACAGGATAGAAGCCCATCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170590.8
CDS-3UTR CAA 90 bp ATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTGCCAGACTAAGCGGTTCTTCACTTaGAAAACGAAGTGCAGAGCT +
Preference number: 5 (lower is better)
Translates to: MQDTAKWWEHFSKHKCQTKRFFT*KTKCRA
Trigger: AGCTCTGCACTTCGTTTTCAAAGTGAAGAACCGCTT...AGTCTGGCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
CDS-3UTR CAA 90 bp ATGGGCTTCTATCCTGTAAGTAGAACTTATATCCTCCTGGGGCTTCAGTTTCAAGGCATTGCTGACAGCTaGGCTAGAAGCAAGCGTGAT +
Preference number: 5 (lower is better)
Translates to: MGFYPVSRTYILLGLQFQGIADS*ARSKRD
Trigger: ATCACGCTTGCTTCTAGCCAAGCTGTCAGCAATGCC...TTGAAACTGAAGCCCCAGGAGGATATAAGTTCTACTTACAGGATAGAAGCCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170590.8
CDS-3UTR CAA 90 bp CAAAACATAAGTGCCAGACTGATAACAGACTGGACTGGAGATGTAAGTGCTCTTGGCATTGCTGACAGCTaGGCTAGAAGCAAGCGTGAT +
Preference number: 5 (lower is better)
Translates to: QNISARLITDWTGDVSALGIADS*ARSKRD
Trigger: ATCACGCTTGCTTCTAGCCAAGCTGTCAGCAATGCC...AAGAGCACTTACATCTCCAGTCCAGTCTGTTATCAGTCTGGCACTTATGTTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR CAA 90 bp ACCCCCATGCCTAGCTGGTTTGGCTTCATTCTGACATTTGTTTCAATAGTATCTTCCAGCTTCCTGGCATaGCTGACAGCTTGGCTAGAA +
Preference number: 5 (lower is better)
Translates to: TPMPSWFGFILTFVSIVSSSFLA*LTAWLE
Trigger: TTCTAGCCAAGCTGTCAGCAATGCCAGGAAGCTGGA...AGATACTATTGAAACAAATGTCAGAATGAAGCCAAACCAGCTAGGCATGGGGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017430.12
CDS-3UTR CAA 90 bp ACCCCCATGCCTAGCTGGTTTGGCTTCATTCTGACATTTGTTTCAATAGTATCTGCCCAGCAAAGCTCGTaGCTTTTCCTCATCTTGCTC +
Preference number: 5 (lower is better)
Translates to: TPMPSWFGFILTFVSIVSAQQSS*LFLILL
Trigger: GAGCAAGATGAGGAAAAGCAACGAGCTTTGCTGGGC...AGATACTATTGAAACAAATGTCAGAATGAAGCCAAACCAGCTAGGCATGGGGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017430.12
CDS-3UTR CAA 90 bp ACTGAGATGGGCTTCTATCCTGTAAGTAGAACTTATATCCTCCTGGGGCTTCAGAAGCGGTTCTTCACTTaGAAAACGAAGTGCAGAGCT +
Preference number: 5 (lower is better)
Translates to: TEMGFYPVSRTYILLGLQKRFFT*KTKCRA
Trigger: AGCTCTGCACTTCGTTTTCAAAGTGAAGAACCGCTT...CTGAAGCCCCAGGAGGATATAAGTTCTACTTACAGGATAGAAGCCCATCTCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170017.8
ENSMUST00000170590.8
CDS-3UTR CAA 90 bp CCTCCTATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTGCGCATCATCCAATAATTaGCTTCCTTTTGGATCCATC +
Preference number: 5 (lower is better)
Translates to: PPMQDTAKWWEHFSKHKCASSNN*LPFGSI
Trigger: GATGGATCCAAAAGGAAGCAAATTATTGGATGATGC...GCACTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR CAA 90 bp TCTTTAGTCTCAGGCCCACAGTCCAATCTAGCTGGTCTAATTTGCGGTGGAGCCTCATCATCCAATAATTaGCTTCCTTTTGGATCCATC +
Preference number: 5 (lower is better)
Translates to: SLVSGPQSNLAGLICGGASSSNN*LPFGSI
Trigger: GATGGATCCAAAAGGAAGCAAATTATTGGATGATGA...GGCTCCACCGCAAATTAGACCAGCTAGATTGGACTGTGGGCCTGAGACTAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169701.8
CDS-3UTR CAA 90 bp ACCCCCATGCCTAGCTGGTTTGGCTTCATTCTGACATTTGTTTCAATAGTATCTGCCCAAATCCCACCATaGTTTTACTCCACTTCCCAT +
Preference number: 5 (lower is better)
Translates to: TPMPSWFGFILTFVSIVSAQIPP*FYSTSH
Trigger: ATGGGAAGTGGAGTAAAACAATGGTGGGATTTGGGC...AGATACTATTGAAACAAATGTCAGAATGAAGCCAAACCAGCTAGGCATGGGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017430.12
CDS-3UTR CAA 90 bp GCTTTGAAGAGTGAAACTACTGCACAGACCTCCTATGCAGGACACAGCCAAGTGTTTTGTCTGCTTCCATaGCATCATCCAATAATTTGC +
Preference number: 5 (lower is better)
Translates to: ALKSETTAQTSYAGHSQVFCLLP*HHPIIC
Trigger: GCAAATTATTGGATGATGCAATGGAAGCAGACAAAA...CACTTGGCTGTGTCCTGCATAGGAGGTCTGTGCAGTAGTTTCACTCTTCAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR CAA 90 bp TTCTCAAAACATAAGTGCCAGACTGATAACAGACTGGACTGGAGATGTAAGTGCAAGCGGTTCTTCACTTaGAAAACGAAGTGCAGAGCT +
Preference number: 5 (lower is better)
Translates to: FSKHKCQTDNRLDWRCKCKRFFT*KTKCRA
Trigger: AGCTCTGCACTTCGTTTTCAAAGTGAAGAACCGCTT...GCACTTACATCTCCAGTCCAGTCTGTTATCAGTCTGGCACTTATGTTTTGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170017.8
CDS-3UTR CAA 90 bp AGACCTCCTATGCAGGACACAGCCAAGTGGTGGGAGCATTTCTCAAAACATAAGTTTTGTCTGCTTCCATaGCATCATCCAATAATTTGC +
Preference number: 5 (lower is better)
Translates to: RPPMQDTAKWWEHFSKHKFCLLP*HHPIIC
Trigger: GCAAATTATTGGATGATGCAATGGAAGCAGACAAAA...CTTATGTTTTGAGAAATGCTCCCACCACTTGGCTGTGTCCTGCATAGGAGGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS-3UTR CAA 90 bp TTCATTTCTAAAAACAGAGCTTTGAAGAGTGAAACTACTGCACAGACCTCCTATGCATCATCCAATAATTaGCTTCCTTTTGGATCCATC +
Preference number: 5 (lower is better)
Translates to: FISKNRALKSETTAQTSYASSNN*LPFGSI
Trigger: GATGGATCCAAAAGGAAGCAAATTATTGGATGATGC...ATAGGAGGTCTGTGCAGTAGTTTCACTCTTCAAAGCTCTGTTTTTAGAAATGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017430.12
ENSMUST00000170710.8
CDS CCA 72 bp TGCATCCCCAGGACATCTCGAAAGAAATGCACTGTCTaGAAGCGGTTCTTCACTTTGAAAACGAAGTGCAGA +
Preference number: 6 (lower is better)
Translates to: CIPRTSRKKCTV*KRFFTLKTKCR
Trigger: TCTGCACTTCGTTTTCAAAGTGAAGAACCGCTTCCAGACAGTGCATTTCTTTCGAGATGTCCTGGGGATGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000017430.12
ENSMUST00000169701.8
ENSMUST00000170017.8
ENSMUST00000170590.8
CDS CAA 90 bp TCAATTCTGCAACAAAATGATCATCCTCGGGCCCAAATCCCACCATaGTTTTACTCCACTTCCCATCATAAGGCCCATTGCATGCAGCTT +
Preference number: 6 (lower is better)
Translates to: SILQQNDHPRAQIPP*FYSTSHHKAHCMQL
Trigger: AAGCTGCATGCAATGGGCCTTATGATGGGAAGTGGAGTAAAACAATGGTGGGATTTGGGCCCGAGGATGATCATTTTGTTGCAGAATTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000017430.12
ENSMUST00000164022.8
ENSMUST00000168055.2
ENSMUST00000169701.8
ENSMUST00000170710.8