RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GHR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055737

Ensembl transcript IDs: ENSMUST00000069451.11, ENSMUST00000110697.9, ENSMUST00000110698.9, ENSMUST00000161561.8, ENSMUST00000161770.2

Found 168 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCAATCACACCACATCACTTCTACTTCTCTTACATGTAGCTGTGTaGCTTGAATGGAAATTTGTCGAAGAAAGCACTTCTTCCATTATT +
Preference number: 1 (lower is better)
Translates to: ANHTTSLLLLLHVAV*LEWKFVEESTSSII
Trigger: AATAATGGAAGAAGTGCTTTCTTCGACAAATTTCCATTCAAGCCACACAGCTACATGTAAGAGAAGTAGAAGTGATGTGGTGTGATTGGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
3UTR-3UTR GCA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTTGGTTTAAGCGTTTGTaGCCAGCCTTTCCCTTGCCA +
Preference number: 2 (lower is better)
Translates to: SITKLRPTVQTITATIQSWFKRL*PAFPLP
Trigger: TGGCAAGGGAAAGGCTGGGCACAAACGCTTAAACCA...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
3UTR CAA 90 bp AGGTTTGATGGCAAGGTTTCTGTTACCTGTTTAATTACTTCTGAGTaGTGCTTTGTGAGTGGGAAGTCATTTATTCTGTCCCTTCTCCCT +
Preference number: 2 (lower is better)
Translates to: RFDGKVSVTCLITSE*CFVSGKSFILSLLP
Trigger: AGGGAGAAGGGACAGAATAAATGACTTCCCACTCACAAAGCACAACTCAGAAGTAATTAAACAGGTAACAGAAACCTTGCCATCAAACCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
3UTR-3UTR GCA 90 bp TTGCATATCCAAACTAGTTTTACCTTCTCACCTAGAGTTTTAGTTCCCAGTTATTGGTTTAAGCGTTTGTaGCCAGCCTTTCCCTTGCCA +
Preference number: 2 (lower is better)
Translates to: LHIQTSFTFSPRVLVPSYWFKRL*PAFPLP
Trigger: TGGCAAGGGAAAGGCTGGGCACAAACGCTTAAACCA...ATAACTGGGAACTAAAACTCTAGGTGAGAAGGTAAAACTAGTTTGGATATGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
3UTR-3UTR GCA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTCCATATCCACTCTCATaGTCTCCCAACACAGATTTA +
Preference number: 2 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILPYPLS*SPNTDL
Trigger: TAAATCTGTGTTGGGAGAGCATGAGAGTGGATATGG...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
3UTR-3UTR CCA 90 bp TTAGAATACTATAAAAACCAAGCTGGGTTTGACAGACTGCACTGTGGAGATGTGGCTGTGTGGCTTGAATaGAAATTTGTCGAAGAAAGC +
Preference number: 2 (lower is better)
Translates to: LEYYKNQAGFDRLHCGDVAVWLE*KFVEES
Trigger: GCTTTCTTCGACAAATTTCCATTCAAGCCACACAGC...CACATCTCCACAGTGCAGTCTGTCAAACCCAGCTTGGTTTTTATAGTATTCTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
3UTR-3UTR TCA 90 bp TTTTTATCTACCTTATCTCCCTTATTTGAGATCGGTTGTCCTGGGAGGGTAAGTTCTGTCCCTTCTCCCTaGATTAAAAATTTGTGTCTG +
Preference number: 2 (lower is better)
Translates to: FLSTLSPLFEIGCPGRVSSVPSP*IKNLCL
Trigger: CAGACACAAATTTTTAATTCAGGGAGAAGGGACAGA...ACTTACCCTCCCAGGACAACCGATCTCAAATAAGGGAGATAAGGTAGATAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
3UTR-3UTR GCA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGACCATATCCACTCTCATaGTCTCCCAACACAGATTTA +
Preference number: 2 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRPYPLS*SPNTDL
Trigger: TAAATCTGTGTTGGGAGAGCATGAGAGTGGATATGG...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
3UTR-3UTR TCA 90 bp TTAGAATACTATAAAAACCAAGCTGGGTTTGACAGACTGCACTGTGGAGATGTGTTTCTTTACGTTCATTaGCCAAAACATGAAACCCTC +
Preference number: 2 (lower is better)
Translates to: LEYYKNQAGFDRLHCGDVFLYVH*PKHETL
Trigger: GAGGGTTTCATGTTTTGGTCAATGAACGTAAAGAAA...CACATCTCCACAGTGCAGTCTGTCAAACCCAGCTTGGTTTTTATAGTATTCTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
3UTR-3UTR GCA 90 bp TTGCATATCCAAACTAGTTTTACCTTCTCACCTAGAGTTTTAGTTCCCAGTTATGCCTGTGCTATAATCTaGATTCAATTTCCTGAACTG +
Preference number: 2 (lower is better)
Translates to: LHIQTSFTFSPRVLVPSYACAII*IQFPEL
Trigger: CAGTTCAGGAAATTGAATGCAGATTATAGCACAGGC...ATAACTGGGAACTAAAACTCTAGGTGAGAAGGTAAAACTAGTTTGGATATGCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
3UTR TCA 72 bp TTAAATATAGACTGCAGAACACAACTAGTTAAACGGTaGATAACGGCTTGTGTGGCCAGCAAAGTACCAAAA +
Preference number: 3 (lower is better)
Translates to: LNIDCRTQLVKR*ITACVASKVPK
Trigger: TTTTGGTACTTTGCTGGCCACACAAGCCGTTATTCACCGTTTAACTAGTTGTGTTCTGCAGTCTATATTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
3UTR GCA 72 bp ATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTaGTACATCCTTAGATGGATTGTTCTGAACTACAAT +
Preference number: 3 (lower is better)
Translates to: IDQNMKPSLHCS*YILRWIVLNYN
Trigger: ATTGTAGTTCAGAACAATCCATCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp TTTTTATCTACCTTATCTCCCTTATTTGAGATCGGTTGTCCTGGGAGGGTAAGTAAGACGTGGCTTCCATaGGAGGGGCCACAGCGATGC +
Preference number: 4 (lower is better)
Translates to: FLSTLSPLFEIGCPGRVSKTWLP*EGPQRC
Trigger: GCATCGCTGTGGCCCCTCGCATGGAAGCCACGTCTT...ACTTACCCTCCCAGGACAACCGATCTCAAATAAGGGAGATAAGGTAGATAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR GCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTAAGACGTGGCTTCCATaGGAGGGGCCACAGCGATGC +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPKTWLP*EGPQRC
Trigger: GCATCGCTGTGGCCCCTCGCATGGAAGCCACGTCTT...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp TTTTTATCTACCTTATCTCCCTTATTTGAGATCGGTTGTCCTGGGAGGGTAAGTAAAATGTGCTGCTGGTaGCTGCCAGTGCCAAGGTTA +
Preference number: 4 (lower is better)
Translates to: FLSTLSPLFEIGCPGRVSKMCCW*LPVPRL
Trigger: TAACCTTGGCACTGGCAGTCACCAGCAGCACATTTT...ACTTACCCTCCCAGGACAACCGATCTCAAATAAGGGAGATAAGGTAGATAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR GCA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTGCATTGGGTGGTGGTTaGCAACTCACTTGGATGTCT +
Preference number: 4 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILALGGG*QLTWMS
Trigger: AGACATCCAAGTGAGTTGGCAACCACCACCCAATGC...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp TTTTTATCTACCTTATCTCCCTTATTTGAGATCGGTTGTCCTGGGAGGGTAAGTTCCCTTCAGAACATCTaGATTGGGTGGTGGTTGCCA +
Preference number: 4 (lower is better)
Translates to: FLSTLSPLFEIGCPGRVSSLQNI*IGWWLP
Trigger: TGGCAACCACCACCCAATGCAGATGTTCTGAAGGGA...ACTTACCCTCCCAGGACAACCGATCTCAAATAAGGGAGATAAGGTAGATAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR CCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTGGTTGCCAACTCACTTaGATGTCTCCACGAATCCCG +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPGCQLT*MSPRIP
Trigger: CGGGATTCGTGGAGACATCCAAGTGAGTTGGCAACC...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTGCTGTCTCAGACATCTaGGCAGTAGTGGTAAGGCTT +
Preference number: 4 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILAVSDI*AVVVRL
Trigger: AAGCCTTACCACTACTGCCCAGATGTCTGAGACAGC...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAACCGTGGTGTAGTCTaGGACAGACATCTCAGCATC +
Preference number: 4 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILNRGVV*DRHLSI
Trigger: GATGCTGAGATGTCTGTCCCAGACTACACCACGGTT...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTAAAATGTGCTGCTGGTaGCTGCCAGTGCCAAGGTTA +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPKMCCW*LPVPRL
Trigger: TAACCTTGGCACTGGCAGTCACCAGCAGCACATTTT...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp CTGCTAACTTTACCCCATCTGGATACTGGATTTCATACATGTGAGACTTTTCCTTTAGTAAAGTCCAGTTaGGGCCAATGGGTGGATCAG +
Preference number: 4 (lower is better)
Translates to: LLTLPHLDTGFHTCETFPLVKSS*GQWVDQ
Trigger: CTGATCCACCCATTGGCCTCAACTGGACTTTACTAA...AGGAAAAGTCTCACATGTATGAAATCCAGTATCCAGATGGGGTAAAGTTAGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR GCA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGAGCATTGGGTGGTGGTTaGCAACTCACTTGGATGTCT +
Preference number: 4 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRALGGG*QLTWMS
Trigger: AGACATCCAAGTGAGTTGGCAACCACCACCCAATGC...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp TTAGAATACTATAAAAACCAAGCTGGGTTTGACAGACTGCACTGTGGAGATGTGAAGGACTACACCACCTaGTGGTGTAATGTCGCTTAC +
Preference number: 4 (lower is better)
Translates to: LEYYKNQAGFDRLHCGDVKDYTT*WCNVAY
Trigger: GTAAGCGACATTACACCAGCAGGTGGTGTAGTCCTT...CACATCTCCACAGTGCAGTCTGTCAAACCCAGCTTGGTTTTTATAGTATTCTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR GCA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTCAAAGGCAAAGCAGTTaGGTTGAGTATAAGGCCCCT +
Preference number: 4 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILQRQSS*VEYKAP
Trigger: AGGGGCCTTATACTCAACGCAACTGCTTTGCCTTTG...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTTCAGAACATCTGCATTaGGTGGTGGTTGCCAACTCA +
Preference number: 4 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILSEHLH*VVVANS
Trigger: TGAGTTGGCAACCACCACCCAATGCAGATGTTCTGA...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTCAGGGTCGTAACAGCTaGTACGCCCAGAATCATCAT +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPQGRNS*YAQNHH
Trigger: ATGATGATTCTGGGCGTACCAGCTGTTACGACCCTG...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTCAGGGTCGTAACAGCTaGTACGCCCAGAATCATCAT +
Preference number: 4 (lower is better)
Translates to: SITKLRPTVQTITATIQSQGRNS*YAQNHH
Trigger: ATGATGATTCTGGGCGTACCAGCTGTTACGACCCTG...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTAACCGTGGTGTAGTCTaGGACAGACATCTCAGCATC +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPNRGVV*DRHLSI
Trigger: GATGCTGAGATGTCTGTCCCAGACTACACCACGGTT...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp CTGCTAACTTTACCCCATCTGGATACTGGATTTCATACATGTGAGACTTTTCCTTTCTGTCCAGTAGCATaGAAATGTCTCCAGTTCAGG +
Preference number: 4 (lower is better)
Translates to: LLTLPHLDTGFHTCETFPFCPVA*KCLQFR
Trigger: CCTGAACTGGAGACATTTTCATGCTACTGGACAGAA...AGGAAAAGTCTCACATGTATGAAATCCAGTATCCAGATGGGGTAAAGTTAGCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR TCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTCCAACTTCCCTTCCTTaGGAAGATCTGGATCAATCC +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPPTSLP*EDLDQS
Trigger: GGATTGATCCAGATCTTCTCAAGGAAGGGAAGTTGG...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTAAGGACTACACCACCTaGTGGTGTAATGTCGCTTAC +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPKDYTT*WCNVAY
Trigger: GTAAGCGACATTACACCAGCAGGTGGTGTAGTCCTT...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTATCTGGAGCAATATCTaGTGTCTCAGACATCTGGGC +
Preference number: 4 (lower is better)
Translates to: SITKLRPTVQTITATIQSIWSNI*CLRHLG
Trigger: GCCCAGATGTCTGAGACAGCAGATATTGCTCCAGAT...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTCAAAGGCAAAGCAGTTaGGTTGAGTATAAGGCCCCT +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPQRQSS*VEYKAP
Trigger: AGGGGCCTTATACTCAACGCAACTGCTTTGCCTTTG...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGATGTTCAGTTGGTCTGTaGTCACATAACCACACGAGG +
Preference number: 4 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRCSVGL*SHNHTR
Trigger: CCTCGTGTGGTTATGTGAGCACAGACCAACTGAACA...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTTTTGCCAAGAGTAGCTaGTGTAGCCTCACTTCCAGA +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPFAKSS*CSLTSR
Trigger: TCTGGAAGTGAGGCTACACCAGCTACTCTTGGCAAA...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTGATTCTTTGCAGAACTaGGGAAGCTTTGCCAAGAGT +
Preference number: 4 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILDSLQN*GSFAKS
Trigger: ACTCTTGGCAAAGCTTCCCCAGTTCTGCAAAGAATC...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTATCTGCATTGGGTGGTaGTTGCCAACTCACTTGGAT +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPICIGW*LPTHLD
Trigger: ATCCAAGTGAGTTGGCAACCACCACCCAATGCAGAT...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp TTAGAATACTATAAAAACCAAGCTGGGTTTGACAGACTGCACTGTGGAGATGTGCATGAATGCCTAAGATaGTGTTCACCTCCTCCAACT +
Preference number: 4 (lower is better)
Translates to: LEYYKNQAGFDRLHCGDVHECLR*CSPPPT
Trigger: AGTTGGAGGAGGTGAACACCATCTTAGGCATTCATG...CACATCTCCACAGTGCAGTCTGTCAAACCCAGCTTGGTTTTTATAGTATTCTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR CCA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTCATGAATGCCTAAGATaGTGTTCACCTCCTCCAACT +
Preference number: 4 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILHECLR*CSPPPT
Trigger: AGTTGGAGGAGGTGAACACCATCTTAGGCATTCATG...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGACATCTCAGCATCTaGAGCAATATCTGCTGTCTC +
Preference number: 4 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILRHLSI*SNICCL
Trigger: GAGACAGCAGATATTGCTCCAGATGCTGAGATGTCT...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGATTCTGTCCAGTAGCATaGAAATGTCTCCAGTTCAGG +
Preference number: 4 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRFCPVA*KCLQFR
Trigger: CCTGAACTGGAGACATTTTCATGCTACTGGACAGAA...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp TTTTTATCTACCTTATCTCCCTTATTTGAGATCGGTTGTCCTGGGAGGGTAAGTTCCAATATGTTCGTCTaGGGAAATATTACACGGAGG +
Preference number: 4 (lower is better)
Translates to: FLSTLSPLFEIGCPGRVSSNMFV*GNITRR
Trigger: CCTCCGTGTAATATTTCCTCAGACGAACATATTGGA...ACTTACCCTCCCAGGACAACCGATCTCAAATAAGGGAGATAAGGTAGATAAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR GCA 90 bp CTGCTAACTTTACCCCATCTGGATACTGGATTTCATACATGTGAGACTTTTCCTCTTGGATTGATTCTTTaGAGAACTGGGGAAGCTTTG +
Preference number: 4 (lower is better)
Translates to: LLTLPHLDTGFHTCETFPLGLIL*RTGEAL
Trigger: CAAAGCTTCCCCAGTTCTGCAAAGAATCAATCCAAG...AGGAAAAGTCTCACATGTATGAAATCCAGTATCCAGATGGGGTAAAGTTAGCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR GCA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGTAGGCACTGTTCATaGTGTAATTTTCTTGGCAGG +
Preference number: 4 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILSRHCS*CNFLGR
Trigger: CCTGCCAAGAAAATTACAGCATGAACAGTGCCTACT...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGAGATTCTTTGCAGAACTaGGGAAGCTTTGCCAAGAGT +
Preference number: 4 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRDSLQN*GSFAKS
Trigger: ACTCTTGGCAAAGCTTCCCCAGTTCTGCAAAGAATC...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTAGACATCTCAGCATCTaGAGCAATATCTGCTGTCTC +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPRHLSI*SNICCL
Trigger: GAGACAGCAGATATTGCTCCAGATGCTGAGATGTCT...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp TTGCATATCCAAACTAGTTTTACCTTCTCACCTAGAGTTTTAGTTCCCAGTTATTCCTGGGTCCATTCATaGGCAATTCTTGCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: LHIQTSFTFSPRVLVPSYSWVHS*AILAAC
Trigger: ACAAGCTGCAAGAATTGCTCATGAATGGACCCAGGA...ATAACTGGGAACTAAAACTCTAGGTGAGAAGGTAAAACTAGTTTGGATATGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTCTATTTCGTCAACAGTaGAACATTTTTGGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILLFRQQ*NIFGPA
Trigger: TGCTGGACCAAAAATGTTTCACTGTTGACGAAATAG...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp TTGCATATCCAAACTAGTTTTACCTTCTCACCTAGAGTTTTAGTTCCCAGTTATTTAGTAAAGTCCAGTTaGGGCCAATGGGTGGATCAG +
Preference number: 4 (lower is better)
Translates to: LHIQTSFTFSPRVLVPSYLVKSS*GQWVDQ
Trigger: CTGATCCACCCATTGGCCTCAACTGGACTTTACTAA...ATAACTGGGAACTAAAACTCTAGGTGAGAAGGTAAAACTAGTTTGGATATGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTTCCAATATGTTCGTCTaGGGAAATATTACACGGAGG +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPSNMFV*GNITRR
Trigger: CCTCCGTGTAATATTTCCTCAGACGAACATATTGGA...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTCAATATCTAGCTCAATaGACTCGACCCAGGAATCAT +
Preference number: 4 (lower is better)
Translates to: SITKLRPTVQTITATIQSQYLAQ*TRPRNH
Trigger: ATGATTCCTGGGTCGAGTTCATTGAGCTAGATATTG...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTCAATATCTAGCTCAATaGACTCGACCCAGGAATCAT +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPQYLAQ*TRPRNH
Trigger: ATGATTCCTGGGTCGAGTTCATTGAGCTAGATATTG...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGATCCAAGGATACCAGCTaGTTTCTCATGATCATTGCT +
Preference number: 4 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRSKDTS*FLMIIA
Trigger: AGCAATGATCATGAGAAATCAGCTGGTATCCTTGGA...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTTCCAAGGATACCAGCTaGTTTCTCATGATCATTGCT +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPSKDTS*FLMIIA
Trigger: AGCAATGATCATGAGAAATCAGCTGGTATCCTTGGA...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTCTTGGATTGATTCTTTaGAGAACTGGGGAAGCTTTG +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPLGLIL*RTGEAL
Trigger: CAAAGCTTCCCCAGTTCTGCAAAGAATCAATCCAAG...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTAGTAGGCACTGTTCATaGTGTAATTTTCTTGGCAGG +
Preference number: 4 (lower is better)
Translates to: SITKLRPTVQTITATIQSSRHCS*CNFLGR
Trigger: CCTGCCAAGAAAATTACAGCATGAACAGTGCCTACT...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp TTGCATATCCAAACTAGTTTTACCTTCTCACCTAGAGTTTTAGTTCCCAGTTATATCTGGAGCAATATCTaGTGTCTCAGACATCTGGGC +
Preference number: 4 (lower is better)
Translates to: LHIQTSFTFSPRVLVPSYIWSNI*CLRHLG
Trigger: GCCCAGATGTCTGAGACAGCAGATATTGCTCCAGAT...ATAACTGGGAACTAAAACTCTAGGTGAGAAGGTAAAACTAGTTTGGATATGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp TTGCATATCCAAACTAGTTTTACCTTCTCACCTAGAGTTTTAGTTCCCAGTTATTGTTCAGTTGGTCTGTaGTCACATAACCACACGAGG +
Preference number: 4 (lower is better)
Translates to: LHIQTSFTFSPRVLVPSYCSVGL*SHNHTR
Trigger: CCTCGTGTGGTTATGTGAGCACAGACCAACTGAACA...ATAACTGGGAACTAAAACTCTAGGTGAGAAGGTAAAACTAGTTTGGATATGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTCATCACACATGTCACTaGTATGGAAATCAGTATCCA +
Preference number: 4 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILHHTCH*YGNQYP
Trigger: TGGATACTGATTTCCATACCAGTGACATGTGTGATG...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp TTGCATATCCAAACTAGTTTTACCTTCTCACCTAGAGTTTTAGTTCCCAGTTATGACTACACCACCTGCTaGTGTAATGTCGCTTACTTG +
Preference number: 4 (lower is better)
Translates to: LHIQTSFTFSPRVLVPSYDYTTC*CNVAYL
Trigger: CAAGTAAGCGACATTACACCAGCAGGTGGTGTAGTC...ATAACTGGGAACTAAAACTCTAGGTGAGAAGGTAAAACTAGTTTGGATATGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
3UTR CAA 72 bp GGCAAGGTTTCTGTTACCTGTTTAATTACTTCTGAGTaGTGCTTTGTGAGTGGGAAGTCATTTATTCTGTCC +
Preference number: 4 (lower is better)
Translates to: GKVSVTCLITSE*CFVSGKSFILS
Trigger: GGACAGAATAAATGACTTCCCACTCACAAAGCACAACTCAGAAGTAATTAAACAGGTAACAGAAACCTTGCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR TCA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTCTATTTCGTCAACAGTaGAACATTTTTGGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: SITKLRPTVQTITATIQSLFRQQ*NIFGPA
Trigger: TGCTGGACCAAAAATGTTTCACTGTTGACGAAATAG...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGATTCTTCAGATTCTTCTaGTCAAGGCACAAGAGATCA +
Preference number: 4 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRFFRFF*SRHKRS
Trigger: TGATCTCTTGTGCCTTGATCAGAAGAATCTGAAGAA...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp TTTTTATCTACCTTATCTCCCTTATTTGAGATCGGTTGTCCTGGGAGGGTAAGTCACATGTCACTGGTATaGAAATCAGTATCCAAAATG +
Preference number: 4 (lower is better)
Translates to: FLSTLSPLFEIGCPGRVSHMSLV*KSVSKM
Trigger: CATTTTGGATACTGATTTCCATACCAGTGACATGTG...ACTTACCCTCCCAGGACAACCGATCTCAAATAAGGGAGATAAGGTAGATAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR CCA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGACTCTTGGTTAAAGCTTaGTTTTATACAAGACGTGGC +
Preference number: 4 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRLLVKA*FYTRRG
Trigger: GCCACGTCTTGTATAAAACCAAGCTTTAACCAAGAG...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTCTCTTGGTTAAAGCTTaGTTTTATACAAGACGTGGC +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPLLVKA*FYTRRG
Trigger: GCCACGTCTTGTATAAAACCAAGCTTTAACCAAGAG...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGATTTATCCATTCTCAATaGGTACACTGGACAGTATGT +
Preference number: 4 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRFIHSQ*VHWTVC
Trigger: ACATACTGTCCAGTGTACTCATTGAGAATGGATAAA...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGAGATATCTTCTTCACATaGTTCCAATATGTTCGTCTG +
Preference number: 4 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRDIFFT*FQYVRL
Trigger: CAGACGAACATATTGGAAGCATGTGAAGAAGATATC...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp CTGCTAACTTTACCCCATCTGGATACTGGATTTCATACATGTGAGACTTTTCCTATTTCTCATGATCATTaGTTAGAAGTCTGTCTGTGT +
Preference number: 4 (lower is better)
Translates to: LLTLPHLDTGFHTCETFPISHDH*LEVCLC
Trigger: ACACAGACAGACTTCTAAGCAATGATCATGAGAAAT...AGGAAAAGTCTCACATGTATGAAATCCAGTATCCAGATGGGGTAAAGTTAGCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR CCA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTACAGTGAAACATTTTTaGTCCAGCAAATCACCATTT +
Preference number: 4 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILTVKHF*SSKSPF
Trigger: AAATGGTGATTTGCTGGACCAAAAATGTTTCACTGT...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTAAGAACCATGGAAACTaGATATCTTCTTCACATGCT +
Preference number: 4 (lower is better)
Translates to: SITKLRPTVQTITATIQSKNHGN*ISSSHA
Trigger: AGCATGTGAAGAAGATATCCAGTTTCCATGGTTCTT...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGACACATGTCACTGGTATaGAAATCAGTATCCAAAATG +
Preference number: 4 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRHMSLV*KSVSKM
Trigger: CATTTTGGATACTGATTTCCATACCAGTGACATGTG...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR TCA 90 bp TTGCATATCCAAACTAGTTTTACCTTCTCACCTAGAGTTTTAGTTCCCAGTTATTTCTTCAGATTCTTCTaGTCAAGGCACAAGAGATCA +
Preference number: 4 (lower is better)
Translates to: LHIQTSFTFSPRVLVPSYFFRFF*SRHKRS
Trigger: TGATCTCTTGTGCCTTGATCAGAAGAATCTGAAGAA...ATAACTGGGAACTAAAACTCTAGGTGAGAAGGTAAAACTAGTTTGGATATGCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTATTTCTCATGATCATTaGTTAGAAGTCTGTCTGTGT +
Preference number: 4 (lower is better)
Translates to: SITKLRPTVQTITATIQSISHDH*LEVCLC
Trigger: ACACAGACAGACTTCTAAGCAATGATCATGAGAAAT...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGATTCCTTGAGAAGATCTaGATCAATCCCTTTAATCTT +
Preference number: 4 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRFLEKI*INPFNL
Trigger: AAGATTAAAGGGATTGATCCAGATCTTCTCAAGGAA...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CCA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTTTCCTTGAGAAGATCTaGATCAATCCCTTTAATCTT +
Preference number: 4 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPFLEKI*INPFNL
Trigger: AAGATTAAAGGGATTGATCCAGATCTTCTCAAGGAA...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR GCA 90 bp TTGCATATCCAAACTAGTTTTACCTTCTCACCTAGAGTTTTAGTTCCCAGTTATGATATCTTCTTCACATaGTTCCAATATGTTCGTCTG +
Preference number: 4 (lower is better)
Translates to: LHIQTSFTFSPRVLVPSYDIFFT*FQYVRL
Trigger: CAGACGAACATATTGGAAGCATGTGAAGAAGATATC...ATAACTGGGAACTAAAACTCTAGGTGAGAAGGTAAAACTAGTTTGGATATGCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS GCA 90 bp GCAGGGCGTGGCCACCTCCCGCTGGGTATTGCCTTGGGCTATCCCTaGCTTAATCTTTTGGCCTGGGGAAAGGACTACACCACCTGCTGG +
Preference number: 5 (lower is better)
Translates to: AGRGHLPLGIALGYP*LNLLAWGKDYTTCW
Trigger: CCAGCAGGTGGTGTAGTCCTTTCCCCAGGCCAAAAGATTAAGGCAGGGATAGCCCAAGGCAATACCCAGCGGGAGGTGGCCACGCCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 90 bp CCGCTGGGTATTGCCTTGGGCTATCCCTGCCTTAATCTTTTGGCCTaGGGAAAGGACTACACCACCTGCTGGTGTAATGTCGCTTACTTG +
Preference number: 5 (lower is better)
Translates to: PLGIALGYPCLNLLA*GKDYTTCWCNVAYL
Trigger: CAAGTAAGCGACATTACACCAGCAGGTGGTGTAGTCCTTTCCCCAGGCCAAAAGATTAAGGCAGGGATAGCCCAAGGCAATACCCAGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 90 bp CACGGTGTGAACCGTGGTGTAGTCTGGGACAGACATCTCAGCATCTaGAGCAATATCTGCTGTCTCAGACATCTGGGCAGTAGTGGTAAG +
Preference number: 5 (lower is better)
Translates to: HGVNRGVVWDRHLSI*SNICCLRHLGSSGK
Trigger: CTTACCACTACTGCCCAGATGTCTGAGACAGCAGATATTGCTCCAGATGCTGAGATGTCTGTCCCAGACTACACCACGGTTCACACCGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 90 bp TATAAGGCCCCTTGGAGACTGCACGGTGTGAACCGTGGTGTAGTCTaGGACAGACATCTCAGCATCTGGAGCAATATCTGCTGTCTCAGA +
Preference number: 5 (lower is better)
Translates to: YKAPWRLHGVNRGVV*DRHLSIWSNICCLR
Trigger: TCTGAGACAGCAGATATTGCTCCAGATGCTGAGATGTCTGTCCCAGACTACACCACGGTTCACACCGTGCAGTCTCCAAGGGGCCTTATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 90 bp TTTGTCAGGCAAAGGCAAAGCAGTTGCGTTGAGTATAAGGCCCCTTaGAGACTGCACGGTGTGAACCGTGGTGTAGTCTGGGACAGACAT +
Preference number: 5 (lower is better)
Translates to: FVRQRQSSCVEYKAP*RLHGVNRGVVWDRH
Trigger: ATGTCTGTCCCAGACTACACCACGGTTCACACCGTGCAGTCTCCAAGGGGCCTTATACTCAACGCAACTGCTTTGCCTTTGCCTGACAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS GCA 90 bp CGAGGCTTTCCAGAAGAACTTGTCCCCAGGCTTGGATTGATTCTTTaGAGAACTGGGGAAGCTTTGCCAAGAGTAGCTGGTGTAGCCTCA +
Preference number: 5 (lower is better)
Translates to: RGFPEELVPRLGLIL*RTGEALPRVAGVAS
Trigger: TGAGGCTACACCAGCTACTCTTGGCAAAGCTTCCCCAGTTCTGCAAAGAATCAATCCAAGCCTGGGGACAAGTTCTTCTGGAAAGCCTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
ENSMUST00000161770.2
CDS CCA 90 bp TGGATTGATTCTTTGCAGAACTGGGGAAGCTTTGCCAAGAGTAGCTaGTGTAGCCTCACTTCCAGAAAATGTGCTGCTGGTGACTGCCAG +
Preference number: 5 (lower is better)
Translates to: WIDSLQNWGSFAKSS*CSLTSRKCAAGDCQ
Trigger: CTGGCAGTCACCAGCAGCACATTTTCTGGAAGTGAGGCTACACCAGCTACTCTTGGCAAAGCTTCCCCAGTTCTGCAAAGAATCAATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
ENSMUST00000161770.2
CDS-3UTR CAA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTACCTCCCGCTGGGTATaGCCTTGGGCTATCCCTGCC +
Preference number: 5 (lower is better)
Translates to: SITKLRPTVQTITATIQSTSRWV*PWAIPA
Trigger: GGCAGGGATAGCCCAAGGCAATACCCAGCGGGAGGT...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS TCA 90 bp TGGTGTAATGTCGCTTACTTGGGCATAAAAGTCAATGTTTGCCAGTaGTGTGGGATTACTCATCGGTGTAGAGGCGAGTTGGTGGGTTGC +
Preference number: 5 (lower is better)
Translates to: WCNVAYLGIKVNVCQ*CGITHRCRGELVGC
Trigger: GCAACCCACCAACTCGCCTCTACACCGATGAGTAATCCCACATCACTGGCAAACATTGACTTTTATGCCCAAGTAAGCGACATTACACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS GCA 90 bp TCCAGAATTATCCATCCCTTCAGAACATCTGCATTGGGTGGTGGTTaGCAACTCACTTGGATGTCTCCACGAATCCCGGTCAAACTAATG +
Preference number: 5 (lower is better)
Translates to: SRIIHPFRTSALGGG*QLTWMSPRIPVKLM
Trigger: CATTAGTTTGACCGGGATTCGTGGAGACATCCAAGTGAGTTGGCAACCACCACCCAATGCAGATGTTCTGAAGGGATGGATAATTCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
CDS CCA 90 bp ATACTCCAGAATTATCCATCCCTTCAGAACATCTGCATTGGGTGGTaGTTGCCAACTCACTTGGATGTCTCCACGAATCCCGGTCAAACT +
Preference number: 5 (lower is better)
Translates to: ILQNYPSLQNICIGW*LPTHLDVSTNPGQT
Trigger: AGTTTGACCGGGATTCGTGGAGACATCCAAGTGAGTTGGCAACCACCACCCAATGCAGATGTTCTGAAGGGATGGATAATTCTGGAGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
CDS CCA 90 bp TTCATACTCCAGAATTATCCATCCCTTCAGAACATCTGCATTGGGTaGTGGTTGCCAACTCACTTGGATGTCTCCACGAATCCCGGTCAA +
Preference number: 5 (lower is better)
Translates to: FILQNYPSLQNICIG*WLPTHLDVSTNPGQ
Trigger: TTGACCGGGATTCGTGGAGACATCCAAGTGAGTTGGCAACCACCACCCAATGCAGATGTTCTGAAGGGATGGATAATTCTGGAGTATGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
CDS CCA 90 bp CACTGGTATGGAAATCAGTATCCAAAATGTCAGGGTCGTAACAGCTaGTACGCCCAGAATCATCATCCTTTGCTCCAAGGATACCAGCTG +
Preference number: 5 (lower is better)
Translates to: HWYGNQYPKCQGRNS*YAQNHHPLLQGYQL
Trigger: CAGCTGGTATCCTTGGAGCAAAGGATGATGATTCTGGGCGTACCAGCTGTTACGACCCTGACATTTTGGATACTGATTTCCATACCAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 90 bp GGTAAGGCTTTCTGTGGTGATGTAAATGTCCTCTTGGTTAAAGCTTaGTTTTATACAAGACGTGGCTTCCATGCGAGGGGCCACAGCGAT +
Preference number: 5 (lower is better)
Translates to: GKAFCGDVNVLLVKA*FYTRRGFHARGHSD
Trigger: ATCGCTGTGGCCCCTCGCATGGAAGCCACGTCTTGTATAAAACCAAGCTTTAACCAAGAGGACATTTACATCACCACAGAAAGCCTTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp TTGCATATCCAAACTAGTTTTACCTTCTCACCTAGAGTTTTAGTTCCCAGTTATACCTCCCGCTGGGTATaGCCTTGGGCTATCCCTGCC +
Preference number: 5 (lower is better)
Translates to: LHIQTSFTFSPRVLVPSYTSRWV*PWAIPA
Trigger: GGCAGGGATAGCCCAAGGCAATACCCAGCGGGAGGT...ATAACTGGGAACTAAAACTCTAGGTGAGAAGGTAAAACTAGTTTGGATATGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 90 bp GGTGATACAGGTGGTTGTCAATCTCTTGATGTGGGTGCTGAGAATTaGACTTGGTTCCTTCTTCACATGCTTCCAATATGTTCGTCTGAG +
Preference number: 5 (lower is better)
Translates to: GDTGGCQSLDVGAEN*TWFLLHMLPICSSE
Trigger: CTCAGACGAACATATTGGAAGCATGTGAAGAAGGAACCAAGTCCAATTCTCAGCACCCACATCAAGAGATTGACAACCACCTGTATCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110697.9
ENSMUST00000110698.9
CDS-3UTR CAA 90 bp TTTTTATCTACCTTATCTCCCTTATTTGAGATCGGTTGTCCTGGGAGGGTAAGTTGCATTGGGTGGTGGTaGCCAACTCACTTGGATGTC +
Preference number: 5 (lower is better)
Translates to: FLSTLSPLFEIGCPGRVSCIGWW*PTHLDV
Trigger: GACATCCAAGTGAGTTGGCAACCACCACCCAATGCA...ACTTACCCTCCCAGGACAACCGATCTCAAATAAGGGAGATAAGGTAGATAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR CAA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGACATGCTGTAATTTTCTaGGCAGGGCGTGGCCACCTC +
Preference number: 5 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRHAVIF*AGRGHL
Trigger: GAGGTGGCCACGCCCTGCCAAGAAAATTACAGCATG...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS TCA 90 bp CCAGAATCATCATCCTTTGCTCCAAGGATACCAGCTGATTTCTCATaGTCATTGCTTAGAAGTCTGTCTGTGTCAGACCCTTCAGTCTTC +
Preference number: 5 (lower is better)
Translates to: PESSSFAPRIPADFS*SLLRSLSVSDPSVF
Trigger: GAAGACTGAAGGGTCTGACACAGACAGACTTCTAAGCAATGATCATGAGAAATCAGCTGGTATCCTTGGAGCAAAGGATGATGATTCTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS GCA 90 bp ATCAGGGCATTCTTTCCATTCCTGGGTCCATTCATGAGCAATTCTTaGAGCTTGTCGTTGGCTTTCCCTTTTAGCATAGTACAGCTGAAT +
Preference number: 5 (lower is better)
Translates to: IRAFFPFLGPFMSNS*SLSLAFPFSIVQLN
Trigger: ATTCAGCTGTACTATGCTAAAAGGGAAAGCCAACGACAAGCTGCAAGAATTGCTCATGAATGGACCCAGGAATGGAAAGAATGCCCTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
ENSMUST00000161770.2
CDS GCA 90 bp CATCATCCTTTGCTCCAAGGATACCAGCTGATTTCTCATGATCATTaGTTAGAAGTCTGTCTGTGTCAGACCCTTCAGTCTTCTCATCCA +
Preference number: 5 (lower is better)
Translates to: HHPLLQGYQLISHDH*LEVCLCQTLQSSHP
Trigger: TGGATGAGAAGACTGAAGGGTCTGACACAGACAGACTTCTAAGCAATGATCATGAGAAATCAGCTGGTATCCTTGGAGCAAAGGATGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS GCA 90 bp CTCTTGATGTGGGTGCTGAGAATTGGACTTGGTTCCTTCTTCACATaGTTCCAATATGTTCGTCTGAGGAAATATTACACGGAGGACTTC +
Preference number: 5 (lower is better)
Translates to: LLMWVLRIGLGSFFT*FQYVRLRKYYTEDF
Trigger: GAAGTCCTCCGTGTAATATTTCCTCAGACGAACATATTGGAAGCATGTGAAGAAGGAACCAAGTCCAATTCTCAGCACCCACATCAAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110697.9
ENSMUST00000110698.9
CDS-3UTR CAA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTGTCCCCAGGCTTGGATaGATTCTTTGCAGAACTGGG +
Preference number: 5 (lower is better)
Translates to: SITKLRPTVQTITATIQSVPRLG*ILCRTG
Trigger: CCCAGTTCTGCAAAGAATCAATCCAAGCCTGGGGAC...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTTGCATTGGGTGGTGGTaGCCAACTCACTTGGATGTC +
Preference number: 5 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPCIGWW*PTHLDV
Trigger: GACATCCAAGTGAGTTGGCAACCACCACCCAATGCA...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTCCCTGCCTTAATCTTTaGGCCTGGGGAAAGGACTAC +
Preference number: 5 (lower is better)
Translates to: SITKLRPTVQTITATIQSPCLNL*AWGKDY
Trigger: GTAGTCCTTTCCCCAGGCCAAAAGATTAAGGCAGGG...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGACCCTGCCTTAATCTTTaGGCCTGGGGAAAGGACTAC +
Preference number: 5 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRPCLNL*AWGKDY
Trigger: GTAGTCCTTTCCCCAGGCCAAAAGATTAAGGCAGGG...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS TCA 90 bp GAATTGGACTTGGTTCCTTCTTCACATGCTTCCAATATGTTCGTCTaGGGAAATATTACACGGAGGACTTCGCTGAACTCGCTGTACTTT +
Preference number: 5 (lower is better)
Translates to: ELDLVPSSHASNMFV*GNITRRTSLNSLYF
Trigger: AAAGTACAGCGAGTTCAGCGAAGTCCTCCGTGTAATATTTCCTCAGACGAACATATTGGAAGCATGTGAAGAAGGAACCAAGTCCAATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110697.9
ENSMUST00000110698.9
CDS-3UTR CAA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTTTCAGAACATCTGCATaGGGTGGTGGTTGCCAACTC +
Preference number: 5 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPFRTSA*GGGCQL
Trigger: GAGTTGGCAACCACCACCCAATGCAGATGTTCTGAA...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTTTCAGAACATCTGCATaGGGTGGTGGTTGCCAACTC +
Preference number: 5 (lower is better)
Translates to: SITKLRPTVQTITATIQSFRTSA*GGGCQL
Trigger: GAGTTGGCAACCACCACCCAATGCAGATGTTCTGAA...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS TCA 90 bp CTTCAGTCTTCTCATCCACATCTGCTTCATCAATATCTAGCTCAATaGACTCGACCCAGGAATCATCATTGTAGAAGTCGGGTTTGTAGT +
Preference number: 5 (lower is better)
Translates to: LQSSHPHLLHQYLAQ*TRPRNHHCRSRVCS
Trigger: ACTACAAACCCGACTTCTACAATGATGATTCCTGGGTCGAGTTCATTGAGCTAGATATTGATGAAGCAGATGTGGATGAGAAGACTGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp TTGCATATCCAAACTAGTTTTACCTTCTCACCTAGAGTTTTAGTTCCCAGTTATGTCCCCAGGCTTGGATaGATTCTTTGCAGAACTGGG +
Preference number: 5 (lower is better)
Translates to: LHIQTSFTFSPRVLVPSYVPRLG*ILCRTG
Trigger: CCCAGTTCTGCAAAGAATCAATCCAAGCCTGGGGAC...ATAACTGGGAACTAAAACTCTAGGTGAGAAGGTAAAACTAGTTTGGATATGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp TTAGAATACTATAAAAACCAAGCTGGGTTTGACAGACTGCACTGTGGAGATGTGTTTAGTAAAGTCCAGTaGAGGCCAATGGGTGGATCA +
Preference number: 5 (lower is better)
Translates to: LEYYKNQAGFDRLHCGDVFSKVQ*RPMGGS
Trigger: TGATCCACCCATTGGCCTCAACTGGACTTTACTAAA...CACATCTCCACAGTGCAGTCTGTCAAACCCAGCTTGGTTTTTATAGTATTCTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR CAA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTTTTAGTAAAGTCCAGTaGAGGCCAATGGGTGGATCA +
Preference number: 5 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILFSKVQ*RPMGGS
Trigger: TGATCCACCCATTGGCCTCAACTGGACTTTACTAAA...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp TTAGAATACTATAAAAACCAAGCTGGGTTTGACAGACTGCACTGTGGAGATGTGTCCAACTTCCCTTCCTaGAGAAGATCTGGATCAATC +
Preference number: 5 (lower is better)
Translates to: LEYYKNQAGFDRLHCGDVSNFPS*RRSGSI
Trigger: GATTGATCCAGATCTTCTCAAGGAAGGGAAGTTGGA...CACATCTCCACAGTGCAGTCTGTCAAACCCAGCTTGGTTTTTATAGTATTCTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR CAA 90 bp ACGTTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAAAAGTGGCTGTGGCTaGTTTTCTTCTACTGTCTGG +
Preference number: 5 (lower is better)
Translates to: TFIDQNMKPSLHCSCYILKSGCG*FSSTVW
Trigger: CCAGACAGTAGAAGAAAACAAGCCACAGCCACTTTT...AAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS GCA 90 bp CTAATGTTTAGTAAAGTCCAGTTGAGGCCAATGGGTGGATCAGGTTaGACTATTTCGTCAACAGTGAAACATTTTTGGTCCAGCAAATCA +
Preference number: 5 (lower is better)
Translates to: LMFSKVQLRPMGGSG*TISSTVKHFWSSKS
Trigger: TGATTTGCTGGACCAAAAATGTTTCACTGTTGACGAAATAGTGCAACCTGATCCACCCATTGGCCTCAACTGGACTTTACTAAACATTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
ENSMUST00000161770.2
CDS-3UTR CAA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTGCTTGGATTGATTCTTaGCAGAACTGGGGAAGCTTT +
Preference number: 5 (lower is better)
Translates to: SITKLRPTVQTITATIQSAWIDS*QNWGSF
Trigger: AAAGCTTCCCCAGTTCTGCAAAGAATCAATCCAAGC...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGATCTTGCAGCTTGTCGTaGGCTTTCCCTTTTAGCATA +
Preference number: 5 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRSCSLS*AFPFSI
Trigger: TATGCTAAAAGGGAAAGCCAACGACAAGCTGCAAGA...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTTCCAACTTCCCTTCCTaGAGAAGATCTGGATCAATC +
Preference number: 5 (lower is better)
Translates to: SITKLRPTVQTITATIQSSNFPS*RRSGSI
Trigger: GATTGATCCAGATCTTCTCAAGGAAGGGAAGTTGGA...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp AACACAGATTTAAAACATAGTTTTGGTTTAAGCGTTTGTGCCCAGCCTTTCCCTAAAAGTGGCTGTGGCTaGTTTTCTTCTACTGTCTGG +
Preference number: 5 (lower is better)
Translates to: NTDLKHSFGLSVCAQPFPKSGCG*FSSTVW
Trigger: CCAGACAGTAGAAGAAAACAAGCCACAGCCACTTTT...AGGGAAAGGCTGGGCACAAACGCTTAAACCAAAACTATGTTTTAAATCTGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp TTTTTATCTACCTTATCTCCCTTATTTGAGATCGGTTGTCCTGGGAGGGTAAGTCATGATTTTGTTCAGTaGGTCTGTGCTCACATAACC +
Preference number: 5 (lower is better)
Translates to: FLSTLSPLFEIGCPGRVSHDFVQ*VCAHIT
Trigger: GGTTATGTGAGCACAGACCAACTGAACAAAATCATG...ACTTACCCTCCCAGGACAACCGATCTCAAATAAGGGAGATAAGGTAGATAAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR CAA 90 bp CTGCTAACTTTACCCCATCTGGATACTGGATTTCATACATGTGAGACTTTTCCTCATAAAAGTCAATGTTaGCCAGTGATGTGGGATTAC +
Preference number: 5 (lower is better)
Translates to: LLTLPHLDTGFHTCETFPHKSQC*PVMWDY
Trigger: GTAATCCCACATCACTGGCAAACATTGACTTTTATG...AGGAAAAGTCTCACATGTATGAAATCCAGTATCCAGATGGGGTAAAGTTAGCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR CAA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTCATGATTTTGTTCAGTaGGTCTGTGCTCACATAACC +
Preference number: 5 (lower is better)
Translates to: SITKLRPTVQTITATIQSHDFVQ*VCAHIT
Trigger: GGTTATGTGAGCACAGACCAACTGAACAAAATCATG...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp TTGCATATCCAAACTAGTTTTACCTTCTCACCTAGAGTTTTAGTTCCCAGTTATGCTTGGATTGATTCTTaGCAGAACTGGGGAAGCTTT +
Preference number: 5 (lower is better)
Translates to: LHIQTSFTFSPRVLVPSYAWIDS*QNWGSF
Trigger: AAAGCTTCCCCAGTTCTGCAAAGAATCAATCCAAGC...ATAACTGGGAACTAAAACTCTAGGTGAGAAGGTAAAACTAGTTTGGATATGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp TTTTTATCTACCTTATCTCCCTTATTTGAGATCGGTTGTCCTGGGAGGGTAAGTAACAGTGAAACATTTTaGGTCCAGCAAATCACCATT +
Preference number: 5 (lower is better)
Translates to: FLSTLSPLFEIGCPGRVSNSETF*VQQITI
Trigger: AATGGTGATTTGCTGGACCAAAAATGTTTCACTGTT...ACTTACCCTCCCAGGACAACCGATCTCAAATAAGGGAGATAAGGTAGATAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069451.11
CDS-3UTR CAA 90 bp AGTATCACAAAATTAAGACCCACAGTACAGACAATCACTGCCACTATACAGTCTCATAAAAGTCAATGTTaGCCAGTGATGTGGGATTAC +
Preference number: 5 (lower is better)
Translates to: SITKLRPTVQTITATIQSHKSQC*PVMWDY
Trigger: GTAATCCCACATCACTGGCAAACATTGACTTTTATG...AGACTGTATAGTGGCAGTGATTGTCTGTACTGTGGGTCTTAATTTTGTGATACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGAAACAGTGAAACATTTTaGGTCCAGCAAATCACCATT +
Preference number: 5 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRNSETF*VQQITI
Trigger: AATGGTGATTTGCTGGACCAAAAATGTTTCACTGTT...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp TTCATTGACCAAAACATGAAACCCTCTTTACACTGTAGCTGCTACATCCTTAGATGTAATGTCGCTTACTaGGGCATAAAAGTCAATGTT +
Preference number: 5 (lower is better)
Translates to: FIDQNMKPSLHCSCYILRCNVAY*GIKVNV
Trigger: AACATTGACTTTTATGCCCAAGTAAGCGACATTACA...TCTAAGGATGTAGCAGCTACAGTGTAAAGAGGGTTTCATGTTTTGGTCAATGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS-3UTR CAA 90 bp TTGCATATCCAAACTAGTTTTACCTTCTCACCTAGAGTTTTAGTTCCCAGTTATTGTAATGTCGCTTACTaGGGCATAAAAGTCAATGTT +
Preference number: 5 (lower is better)
Translates to: LHIQTSFTFSPRVLVPSYCNVAY*GIKVNV
Trigger: AACATTGACTTTTATGCCCAAGTAAGCGACATTACA...ATAACTGGGAACTAAAACTCTAGGTGAGAAGGTAAAACTAGTTTGGATATGCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 72 bp TGGCAGGGCGTGGCCACCTCCCGCTGGGTATTGCCTTaGGCTATCCCTGCCTTAATCTTTTGGCCTGGGGAA +
Preference number: 6 (lower is better)
Translates to: WQGVATSRWVLP*AIPALIFWPGE
Trigger: TTCCCCAGGCCAAAAGATTAAGGCAGGGATAGCCCAAGGCAATACCCAGCGGGAGGTGGCCACGCCCTGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CAA 72 bp TTGGCAGGGCGTGGCCACCTCCCGCTGGGTATTGCCTaGGGCTATCCCTGCCTTAATCTTTTGGCCTGGGGA +
Preference number: 6 (lower is better)
Translates to: LAGRGHLPLGIA*GYPCLNLLAWG
Trigger: TCCCCAGGCCAAAAGATTAAGGCAGGGATAGCCCAAGGCAATACCCAGCGGGAGGTGGCCACGCCCTGCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 72 bp AGGCACTGTTCATGCTGTAATTTTCTTGGCAGGGCGTaGCCACCTCCCGCTGGGTATTGCCTTGGGCTATCC +
Preference number: 6 (lower is better)
Translates to: RHCSCCNFLGRA*PPPAGYCLGLS
Trigger: GGATAGCCCAAGGCAATACCCAGCGGGAGGTGGCCACGCCCTGCCAAGAAAATTACAGCATGAACAGTGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CAA 72 bp TTTTCTTGGCAGGGCGTGGCCACCTCCCGCTGGGTATaGCCTTGGGCTATCCCTGCCTTAATCTTTTGGCCT +
Preference number: 6 (lower is better)
Translates to: FSWQGVATSRWV*PWAIPALIFWP
Trigger: AGGCCAAAAGATTAAGGCAGGGATAGCCCAAGGCAATACCCAGCGGGAGGTGGCCACGCCCTGCCAAGAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CAA 90 bp CACCTCCCGCTGGGTATTGCCTTGGGCTATCCCTGCCTTAATCTTTaGGCCTGGGGAAAGGACTACACCACCTGCTGGTGTAATGTCGCT +
Preference number: 6 (lower is better)
Translates to: HLPLGIALGYPCLNL*AWGKDYTTCWCNVA
Trigger: AGCGACATTACACCAGCAGGTGGTGTAGTCCTTTCCCCAGGCCAAAAGATTAAGGCAGGGATAGCCCAAGGCAATACCCAGCGGGAGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 72 bp CCTTGGAGACTGCACGGTGTGAACCGTGGTGTAGTCTaGGACAGACATCTCAGCATCTGGAGCAATATCTGC +
Preference number: 6 (lower is better)
Translates to: PWRLHGVNRGVV*DRHLSIWSNIC
Trigger: GCAGATATTGCTCCAGATGCTGAGATGTCTGTCCCAGACTACACCACGGTTCACACCGTGCAGTCTCCAAGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CAA 72 bp CTGGGTATTGCCTTGGGCTATCCCTGCCTTAATCTTTaGGCCTGGGGAAAGGACTACACCACCTGCTGGTGT +
Preference number: 6 (lower is better)
Translates to: LGIALGYPCLNL*AWGKDYTTCWC
Trigger: ACACCAGCAGGTGGTGTAGTCCTTTCCCCAGGCCAAAAGATTAAGGCAGGGATAGCCCAAGGCAATACCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CAA 72 bp CTCACAAAAGTAGGCACTGTTCATGCTGTAATTTTCTaGGCAGGGCGTGGCCACCTCCCGCTGGGTATTGCC +
Preference number: 6 (lower is better)
Translates to: LTKVGTVHAVIF*AGRGHLPLGIA
Trigger: GGCAATACCCAGCGGGAGGTGGCCACGCCCTGCCAAGAAAATTACAGCATGAACAGTGCCTACTTTTGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS GCA 72 bp ATCCATCCCTTCAGAACATCTGCATTGGGTGGTGGTTaGCAACTCACTTGGATGTCTCCACGAATCCCGGTC +
Preference number: 6 (lower is better)
Translates to: IHPFRTSALGGG*QLTWMSPRIPV
Trigger: GACCGGGATTCGTGGAGACATCCAAGTGAGTTGGCAACCACCACCCAATGCAGATGTTCTGAAGGGATGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
CDS CAA 90 bp AGTTGGTGGGTTGCCTCAGTTTCGCTGCTCAAAAGTGGCTGTGGCTaGTTTTCTTCTACTGTCTGGGTAATGGAGGGATGCAGAGAGCCA +
Preference number: 6 (lower is better)
Translates to: SWWVASVSLLKSGCG*FSSTVWVMEGCREP
Trigger: TGGCTCTCTGCATCCCTCCATTACCCAGACAGTAGAAGAAAACAAGCCACAGCCACTTTTGAGCAGCGAAACTGAGGCAACCCACCAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 72 bp AACCGTGGTGTAGTCTGGGACAGACATCTCAGCATCTaGAGCAATATCTGCTGTCTCAGACATCTGGGCAGT +
Preference number: 6 (lower is better)
Translates to: NRGVVWDRHLSI*SNICCLRHLGS
Trigger: ACTGCCCAGATGTCTGAGACAGCAGATATTGCTCCAGATGCTGAGATGTCTGTCCCAGACTACACCACGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS GCA 72 bp CCAGAAGAACTTGTCCCCAGGCTTGGATTGATTCTTTaGAGAACTGGGGAAGCTTTGCCAAGAGTAGCTGGT +
Preference number: 6 (lower is better)
Translates to: PEELVPRLGLIL*RTGEALPRVAG
Trigger: ACCAGCTACTCTTGGCAAAGCTTCCCCAGTTCTGCAAAGAATCAATCCAAGCCTGGGGACAAGTTCTTCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
ENSMUST00000161770.2
CDS CCA 72 bp TCTTTGCAGAACTGGGGAAGCTTTGCCAAGAGTAGCTaGTGTAGCCTCACTTCCAGAAAATGTGCTGCTGGT +
Preference number: 6 (lower is better)
Translates to: SLQNWGSFAKSS*CSLTSRKCAAG
Trigger: ACCAGCAGCACATTTTCTGGAAGTGAGGCTACACCAGCTACTCTTGGCAAAGCTTCCCCAGTTCTGCAAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
ENSMUST00000161770.2
CDS CAA 72 bp CGAGGCTTTCCAGAAGAACTTGTCCCCAGGCTTGGATaGATTCTTTGCAGAACTGGGGAAGCTTTGCCAAGA +
Preference number: 6 (lower is better)
Translates to: RGFPEELVPRLG*ILCRTGEALPR
Trigger: TCTTGGCAAAGCTTCCCCAGTTCTGCAAAGAATCAATCCAAGCCTGGGGACAAGTTCTTCTGGAAAGCCTCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
ENSMUST00000161770.2
CDS CAA 72 bp GTTGCCTCAGTTTCGCTGCTCAAAAGTGGCTGTGGCTaGTTTTCTTCTACTGTCTGGGTAATGGAGGGATGC +
Preference number: 6 (lower is better)
Translates to: VASVSLLKSGCG*FSSTVWVMEGC
Trigger: GCATCCCTCCATTACCCAGACAGTAGAAGAAAACAAGCCACAGCCACTTTTGAGCAGCGAAACTGAGGCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CAA 90 bp ATGGCGGATCCTCTGAAGCTGGTGATACAGGTGGTTGTCAATCTCTaGATGTGGGTGCTGAGAATTGGACTTGGTTCCTTCTTCACATGC +
Preference number: 6 (lower is better)
Translates to: MADPLKLVIQVVVNL*MWVLRIGLGSFFTC
Trigger: GCATGTGAAGAAGGAACCAAGTCCAATTCTCAGCACCCACATCAAGAGATTGACAACCACCTGTATCACCAGCTTCAGAGGATCCGCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110697.9
ENSMUST00000110698.9
CDS CCA 72 bp AATTATCCATCCCTTCAGAACATCTGCATTGGGTGGTaGTTGCCAACTCACTTGGATGTCTCCACGAATCCC +
Preference number: 6 (lower is better)
Translates to: NYPSLQNICIGW*LPTHLDVSTNP
Trigger: GGGATTCGTGGAGACATCCAAGTGAGTTGGCAACCACCACCCAATGCAGATGTTCTGAAGGGATGGATAATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
CDS CCA 72 bp GAGTTGGTGGGTTGCCTCAGTTTCGCTGCTCAAAAGTaGCTGTGGCTTGTTTTCTTCTACTGTCTGGGTAAT +
Preference number: 6 (lower is better)
Translates to: ELVGCLSFAAQK*LWLVFFYCLGN
Trigger: ATTACCCAGACAGTAGAAGAAAACAAGCCACAGCCACTTTTGAGCAGCGAAACTGAGGCAACCCACCAACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CAA 90 bp CTGGGCAGTAGTGGTAAGGCTTTCTGTGGTGATGTAAATGTCCTCTaGGTTAAAGCTTGGTTTTATACAAGACGTGGCTTCCATGCGAGG +
Preference number: 6 (lower is better)
Translates to: LGSSGKAFCGDVNVL*VKAWFYTRRGFHAR
Trigger: CCTCGCATGGAAGCCACGTCTTGTATAAAACCAAGCTTTAACCAAGAGGACATTTACATCACCACAGAAAGCCTTACCACTACTGCCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS TCA 72 bp GTCGCTTACTTGGGCATAAAAGTCAATGTTTGCCAGTaGTGTGGGATTACTCATCGGTGTAGAGGCGAGTTG +
Preference number: 6 (lower is better)
Translates to: VAYLGIKVNVCQ*CGITHRCRGEL
Trigger: CAACTCGCCTCTACACCGATGAGTAATCCCACATCACTGGCAAACATTGACTTTTATGCCCAAGTAAGCGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 72 bp CAGAATTATCCATCCCTTCAGAACATCTGCATTGGGTaGTGGTTGCCAACTCACTTGGATGTCTCCACGAAT +
Preference number: 6 (lower is better)
Translates to: QNYPSLQNICIG*WLPTHLDVSTN
Trigger: ATTCGTGGAGACATCCAAGTGAGTTGGCAACCACCACCCAATGCAGATGTTCTGAAGGGATGGATAATTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
CDS CCA 72 bp GTTCACCTCCTCCAACTTCCCTTCCTTGAGAAGATCTaGATCAATCCCTTTAATCTTTGGAACTGGGACTGG +
Preference number: 6 (lower is better)
Translates to: VHLLQLPFLEKI*INPFNLWNWDW
Trigger: CCAGTCCCAGTTCCAAAGATTAAAGGGATTGATCCAGATCTTCTCAAGGAAGGGAAGTTGGAGGAGGTGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 72 bp GGAAATCAGTATCCAAAATGTCAGGGTCGTAACAGCTaGTACGCCCAGAATCATCATCCTTTGCTCCAAGGA +
Preference number: 6 (lower is better)
Translates to: GNQYPKCQGRNS*YAQNHHPLLQG
Trigger: TCCTTGGAGCAAAGGATGATGATTCTGGGCGTACCAGCTGTTACGACCCTGACATTTTGGATACTGATTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CAA 72 bp CCATTCCTGGGTCCATTCATGAGCAATTCTTGCAGCTaGTCGTTGGCTTTCCCTTTTAGCATAGTACAGCTG +
Preference number: 6 (lower is better)
Translates to: PFLGPFMSNSCS*SLAFPFSIVQL
Trigger: CAGCTGTACTATGCTAAAAGGGAAAGCCAACGACAAGCTGCAAGAATTGCTCATGAATGGACCCAGGAATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
ENSMUST00000161770.2
CDS CAA 72 bp TACTCCAGAATTATCCATCCCTTCAGAACATCTGCATaGGGTGGTGGTTGCCAACTCACTTGGATGTCTCCA +
Preference number: 6 (lower is better)
Translates to: YSRIIHPFRTSA*GGGCQLTWMSP
Trigger: TGGAGACATCCAAGTGAGTTGGCAACCACCACCCAATGCAGATGTTCTGAAGGGATGGATAATTCTGGAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
CDS CAA 72 bp GGTCGTAACAGCTGGTACGCCCAGAATCATCATCCTTaGCTCCAAGGATACCAGCTGATTTCTCATGATCAT +
Preference number: 6 (lower is better)
Translates to: GRNSWYAQNHHP*LQGYQLISHDH
Trigger: ATGATCATGAGAAATCAGCTGGTATCCTTGGAGCAAAGGATGATGATTCTGGGCGTACCAGCTGTTACGACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CAA 90 bp TTTCCATTCCTGGGTCCATTCATGAGCAATTCTTGCAGCTTGTCGTaGGCTTTCCCTTTTAGCATAGTACAGCTGAATAGATCCTGGGGT +
Preference number: 6 (lower is better)
Translates to: FPFLGPFMSNSCSLS*AFPFSIVQLNRSWG
Trigger: ACCCCAGGATCTATTCAGCTGTACTATGCTAAAAGGGAAAGCCAACGACAAGCTGCAAGAATTGCTCATGAATGGACCCAGGAATGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
ENSMUST00000161770.2
CDS CAA 90 bp ATGTCTCCACGAATCCCGGTCAAACTAATGTTTAGTAAAGTCCAGTaGAGGCCAATGGGTGGATCAGGTTGCACTATTTCGTCAACAGTG +
Preference number: 6 (lower is better)
Translates to: MSPRIPVKLMFSKVQ*RPMGGSGCTISSTV
Trigger: CACTGTTGACGAAATAGTGCAACCTGATCCACCCATTGGCCTCAACTGGACTTTACTAAACATTAGTTTGACCGGGATTCGTGGAGACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
ENSMUST00000161770.2
CDS CCA 72 bp TTCTGTGGTGATGTAAATGTCCTCTTGGTTAAAGCTTaGTTTTATACAAGACGTGGCTTCCATGCGAGGGGC +
Preference number: 6 (lower is better)
Translates to: FCGDVNVLLVKA*FYTRRGFHARG
Trigger: GCCCCTCGCATGGAAGCCACGTCTTGTATAAAACCAAGCTTTAACCAAGAGGACATTTACATCACCACAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 72 bp AAGCTGGTGATACAGGTGGTTGTCAATCTCTTGATGTaGGTGCTGAGAATTGGACTTGGTTCCTTCTTCACA +
Preference number: 6 (lower is better)
Translates to: KLVIQVVVNLLM*VLRIGLGSFFT
Trigger: TGTGAAGAAGGAACCAAGTCCAATTCTCAGCACCCACATCAAGAGATTGACAACCACCTGTATCACCAGCTT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110697.9
ENSMUST00000110698.9
CDS CAA 72 bp CGAATCCCGGTCAAACTAATGTTTAGTAAAGTCCAGTaGAGGCCAATGGGTGGATCAGGTTGCACTATTTCG +
Preference number: 6 (lower is better)
Translates to: RIPVKLMFSKVQ*RPMGGSGCTIS
Trigger: CGAAATAGTGCAACCTGATCCACCCATTGGCCTCAACTGGACTTTACTAAACATTAGTTTGACCGGGATTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
ENSMUST00000161770.2
CDS CAA 90 bp GCATTCTTTCCATTCCTGGGTCCATTCATGAGCAATTCTTGCAGCTaGTCGTTGGCTTTCCCTTTTAGCATAGTACAGCTGAATAGATCC +
Preference number: 6 (lower is better)
Translates to: AFFPFLGPFMSNSCS*SLAFPFSIVQLNRS
Trigger: GGATCTATTCAGCTGTACTATGCTAAAAGGGAAAGCCAACGACAAGCTGCAAGAATTGCTCATGAATGGACCCAGGAATGGAAAGAATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
ENSMUST00000161770.2
CDS CAA 90 bp AAATGTCAGGGTCGTAACAGCTGGTACGCCCAGAATCATCATCCTTaGCTCCAAGGATACCAGCTGATTTCTCATGATCATTGCTTAGAA +
Preference number: 6 (lower is better)
Translates to: KCQGRNSWYAQNHHP*LQGYQLISHDHCLE
Trigger: TTCTAAGCAATGATCATGAGAAATCAGCTGGTATCCTTGGAGCAAAGGATGATGATTCTGGGCGTACCAGCTGTTACGACCCTGACATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS GCA 72 bp AGTAAAGTCCAGTTGAGGCCAATGGGTGGATCAGGTTaGACTATTTCGTCAACAGTGAAACATTTTTGGTCC +
Preference number: 6 (lower is better)
Translates to: SKVQLRPMGGSG*TISSTVKHFWS
Trigger: GGACCAAAAATGTTTCACTGTTGACGAAATAGTGCAACCTGATCCACCCATTGGCCTCAACTGGACTTTACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
ENSMUST00000161770.2
CDS GCA 72 bp TTGCTCCAAGGATACCAGCTGATTTCTCATGATCATTaGTTAGAAGTCTGTCTGTGTCAGACCCTTCAGTCT +
Preference number: 6 (lower is better)
Translates to: LLQGYQLISHDH*LEVCLCQTLQS
Trigger: AGACTGAAGGGTCTGACACAGACAGACTTCTAAGCAATGATCATGAGAAATCAGCTGGTATCCTTGGAGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS TCA 72 bp TCTCATCCACATCTGCTTCATCAATATCTAGCTCAATaGACTCGACCCAGGAATCATCATTGTAGAAGTCGG +
Preference number: 6 (lower is better)
Translates to: SHPHLLHQYLAQ*TRPRNHHCRSR
Trigger: CCGACTTCTACAATGATGATTCCTGGGTCGAGTTCATTGAGCTAGATATTGATGAAGCAGATGTGGATGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS GCA 72 bp TTCTTTCCATTCCTGGGTCCATTCATGAGCAATTCTTaGAGCTTGTCGTTGGCTTTCCCTTTTAGCATAGTA +
Preference number: 6 (lower is better)
Translates to: FFPFLGPFMSNS*SLSLAFPFSIV
Trigger: TACTATGCTAAAAGGGAAAGCCAACGACAAGCTGCAAGAATTGCTCATGAATGGACCCAGGAATGGAAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069451.11
ENSMUST00000110697.9
ENSMUST00000110698.9
ENSMUST00000161561.8
ENSMUST00000161770.2
CDS GCA 72 bp CATCATTGTAGAAGTCGGGTTTGTAGTTATCATGAATaGCTAAGATGGTGTTCACCTCCTCCAACTTCCCTT +
Preference number: 6 (lower is better)
Translates to: HHCRSRVCSYHE*LRWCSPPPTSL
Trigger: AAGGGAAGTTGGAGGAGGTGAACACCATCTTAGGCATTCATGATAACTACAAACCCGACTTCTACAATGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 72 bp ACTGAGCAAACTTCAAGGTACCATCACACATGTCACTaGTATGGAAATCAGTATCCAAAATGTCAGGGTCGT +
Preference number: 6 (lower is better)
Translates to: TEQTSRYHHTCH*YGNQYPKCQGR
Trigger: ACGACCCTGACATTTTGGATACTGATTTCCATACCAGTGACATGTGTGATGGTACCTTGAAGTTTGCTCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8
CDS CCA 72 bp TGTCAATCTCTTGATGTGGGTGCTGAGAATTGGACTTaGTTCCTTCTTCACATGCTTCCAATATGTTCGTCT +
Preference number: 6 (lower is better)
Translates to: CQSLDVGAENWT*FLLHMLPICSS
Trigger: AGACGAACATATTGGAAGCATGTGAAGAAGGAACCAAGTCCAATTCTCAGCACCCACATCAAGAGATTGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110697.9
ENSMUST00000110698.9
CDS TCA 72 bp CACAAGAGATCAGCTTCCATATTTAACTTCTGTGACTaGGCAAACTTCAAGGTACCATCACACATGTCACTG +
Preference number: 6 (lower is better)
Translates to: HKRSASIFNFCD*ANFKVPSHMSL
Trigger: CAGTGACATGTGTGATGGTACCTTGAAGTTTGCTCAGTCACAGAAGTTAAATATGGAAGCTGATCTCTTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069451.11
ENSMUST00000161561.8