Pregenerated sensors for GCA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026893Ensembl transcript IDs: ENSMUST00000028257.3
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCATCTTCATTGGAATTTTTAGTATGGGCAAGGGTGTGCAAGTCTTaGATTTCTACAAACAATGAGGGACAAGAAAGGAAGACCATGAAT | + |
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Preference number: 1 (lower is better) Translates to: ASSLEFLVWARVCKS*ISTNNEGQERKTMN Trigger: ATTCATGGTCTTCCTTTCTTGTCCCTCATTGTTTGTAGAAATTCAAGACTTGCACACCCTTGCCCATACTAAAAATTCCAATGAAGATGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR CCA 90 bp | TACATTAAGAGTGTACACTGCTCAATGACTTACAACATCATGGTGTaGCTTCTGTTTTCTATGACAGCTTCAGATTCTGTACCTTCAATG | + |
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Preference number: 1 (lower is better) Translates to: YIKSVHCSMTYNIMV*LLFSMTASDSVPSM Trigger: CATTGAAGGTACAGAATCTGAAGCTGTCATAGAAAACAGAAGCCACACCATGATGTTGTAAGTCATTGAGCAGTGTACACTCTTAATGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR-3UTR GCA 90 bp | CAAAAGACAGCACAAAGTGCAGCTGTCCCCTCTGACTCACTCCTAGAAACACCCACTAAGGCTCAGGTATaGTGGGATCAGTTAGCTACA | + |
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Preference number: 2 (lower is better) Translates to: QKTAQSAAVPSDSLLETPTKAQV*WDQLAT Trigger: TGTAGCTAACTGATCCCAGCATACCTGAGCCTTAGT...GGGTGTTTCTAGGAGTGAGTCAGAGGGGACAGCTGCACTTTGTGCTGTCTTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR-3UTR CCA 90 bp | TCTGTACCTTCAATGGTTCCCTTAATATTCCTTCAGGCTACTGACTATGTGGTCAGGGAAGTGGACGAATaGGAGGAGGAGGATAATTTT | + |
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Preference number: 2 (lower is better) Translates to: SVPSMVPLIFLQATDYVVREVDE*EEEDNF Trigger: AAAATTATCCTCCTCCTCCCATTCGTCCACTTCCCT...GACCACATAGTCAGTAGCCTGAAGGAATATTAAGGGAACCATTGAAGGTACAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR-3UTR TCA 90 bp | TCTGTACCTTCAATGGTTCCCTTAATATTCCTTCAGGCTACTGACTATGTGGTCTTAACTGAACAAACGTaGATGAATGCTGACCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: SVPSMVPLIFLQATDYVVLTEQT*MNADPA Trigger: TGCTGGGTCAGCATTCATTCACGTTTGTTCAGTTAA...GACCACATAGTCAGTAGCCTGAAGGAATATTAAGGGAACCATTGAAGGTACAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR-3UTR TCA 90 bp | AGACAACTTAATGCAAAGAACCCGGTAACCACTGAAATCTCTATAGAAAATTTCTCCAGTCTGTTTCAATaGAGCAGAAGGATTCGCAGT | + |
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Preference number: 2 (lower is better) Translates to: RQLNAKNPVTTEISIENFSSLFQ*SRRIRS Trigger: ACTGCGAATCCTTCTGCTTCATTGAAACAGACTGGA...GAAATTTTCTATAGAGATTTCAGTGGTTACCGGGTTCTTTGCATTAAGTTGTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR-3UTR TCA 90 bp | AGACAACTTAATGCAAAGAACCCGGTAACCACTGAAATCTCTATAGAAAATTTCGAACCTGGCTTTAACTaGACAAACGTGAATGAATGC | + |
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Preference number: 2 (lower is better) Translates to: RQLNAKNPVTTEISIENFEPGFN*TNVNEC Trigger: GCATTCATTCACGTTTGTTCAGTTAAAGCCAGGTTC...GAAATTTTCTATAGAGATTTCAGTGGTTACCGGGTTCTTTGCATTAAGTTGTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR-3UTR CCA 90 bp | AGACAACTTAATGCAAAGAACCCGGTAACCACTGAAATCTCTATAGAAAATTTCAGTCAAAACACTACTTaGCACACACACACACACACA | + |
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Preference number: 2 (lower is better) Translates to: RQLNAKNPVTTEISIENFSQNTT*HTHTHT Trigger: TGTGTGTGTGTGTGTGTGCCAAGTAGTGTTTTGACT...GAAATTTTCTATAGAGATTTCAGTGGTTACCGGGTTCTTTGCATTAAGTTGTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR CAA 90 bp | CCCTTAATATTCCTTCAGGCTACTGACTATGTGGTCATGAACAAATaGTCAGAGGACAATGTGTATGCATTATTCATTGATCTATTCTTA | + |
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Preference number: 2 (lower is better) Translates to: PLIFLQATDYVVMNK*SEDNVYALFIDLFL Trigger: TAAGAATAGATCAATGAATAATGCATACACATTGTCCTCTGACAATTTGTTCATGACCACATAGTCAGTAGCCTGAAGGAATATTAAGGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR-3UTR CAA 90 bp | AACACTGCCTATGGAACAAGAAGGAGGAGGAGGAGGAAGAGGAAGAAGAGGAGGAAGTCAAAACACTACTaGGCACACACACACACACAC | + |
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Preference number: 3 (lower is better) Translates to: NTAYGTRRRRRRKRKKRRKSKHY*AHTHTH Trigger: GTGTGTGTGTGTGTGTGCCAAGTAGTGTTTTGACTT...CCTCCTCTTCTTCCTCTTCCTCCTCCTCCTCCTTCTTGTTCCATAGGCAGTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR TCA 72 bp | AACCCAAAAGACAGCACAAAGTGCAGCTGTCCCCTCTaGCTCACTCCTAGAAACACCCACAGACACAAACAA | + |
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Preference number: 3 (lower is better) Translates to: NPKDSTKCSCPL*LTPRNTHRHKQ Trigger: TTGTTTGTGTCTGTGGGTGTTTCTAGGAGTGAGTCAGAGGGGACAGCTGCACTTTGTGCTGTCTTTTGGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR-3UTR CAA 90 bp | AACACTGCCTATGGAACAAGAAGGAGGAGGAGGAGGAAGAGGAAGAAGAGGAGGTTCTGCTATGCTTTATaGTTAAGAACTAAGGCTCAG | + |
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Preference number: 3 (lower is better) Translates to: NTAYGTRRRRRRKRKKRRFCYAL*LRTKAQ Trigger: CTGAGCCTTAGTTCTTAACAATAAAGCATAGCAGAA...CCTCCTCTTCTTCCTCTTCCTCCTCCTCCTCCTTCTTGTTCCATAGGCAGTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR CCA 72 bp | CCAAAGAACGATAAAGTCTTAGGAACTACAGTTCACTaGCCACGAACATGTGCTATGTCCTCTGATGGTTTA | + |
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Preference number: 3 (lower is better) Translates to: PKNDKVLGTTVH*PRTCAMSSDGL Trigger: TAAACCATCAGAGGACATAGCACATGTTCGTGGCCAGTGAACTGTAGTTCCTAAGACTTTATCGTTCTTTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR TCA 72 bp | TTTCTACAAACAATGAGGGACAAGAAAGGAAGACCATaGATTTGTGTCACACTGGGCTATGTAGAAAGACCC | + |
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Preference number: 3 (lower is better) Translates to: FLQTMRDKKGRP*ICVTLGYVERP Trigger: GGGTCTTTCTACATAGCCCAGTGTGACACAAATTCATGGTCTTCCTTTCTTGTCCCTCATTGTTTGTAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR-3UTR CAA 90 bp | TCTGTACCTTCAATGGTTCCCTTAATATTCCTTCAGGCTACTGACTATGTGGTCTTGCTTTATAAACTGTaGCCATTAACTAGGAGCAGA | + |
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Preference number: 3 (lower is better) Translates to: SVPSMVPLIFLQATDYVVLLYKL*PLTRSR Trigger: TCTGCTCCTAGTTAATGGCAACAGTTTATAAAGCAA...GACCACATAGTCAGTAGCCTGAAGGAATATTAAGGGAACCATTGAAGGTACAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR-3UTR CAA 90 bp | TCTGTACCTTCAATGGTTCCCTTAATATTCCTTCAGGCTACTGACTATGTGGTCAACCAAGTATCCAGATaGATGGCAAGTTACATAGTA | + |
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Preference number: 3 (lower is better) Translates to: SVPSMVPLIFLQATDYVVNQVSR*MASYIV Trigger: TACTATGTAACTTGCCATCAATCTGGATACTTGGTT...GACCACATAGTCAGTAGCCTGAAGGAATATTAAGGGAACCATTGAAGGTACAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR TCA 72 bp | ACCTTCAATGGTTCCCTTAATATTCCTTCAGGCTACTaGCTATGTGGTCATGAACAAATTGTCAGAGGACAA | + |
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Preference number: 3 (lower is better) Translates to: TFNGSLNIPSGY*LCGHEQIVRGQ Trigger: TTGTCCTCTGACAATTTGTTCATGACCACATAGTCAGTAGCCTGAAGGAATATTAAGGGAACCATTGAAGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR CCA 72 bp | AATCTCTATAGAAAATTTCACCAAAAACACTGCCTATaGAACAAGAAGGAGGAGGAGGAGGAAGAGGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: NLYRKFHQKHCL*NKKEEEEEEEE Trigger: TTCTTCCTCTTCCTCCTCCTCCTCCTTCTTGTTCCATAGGCAGTGTTTTTGGTGAAATTTTCTATAGAGATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR CCA 72 bp | AGTGTACACTGCTCAATGACTTACAACATCATGGTGTaGCTTCTGTTTTCTATGACAGCTTCAGATTCTGTA | + |
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Preference number: 3 (lower is better) Translates to: SVHCSMTYNIMV*LLFSMTASDSV Trigger: TACAGAATCTGAAGCTGTCATAGAAAACAGAAGCCACACCATGATGTTGTAAGTCATTGAGCAGTGTACACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR TCA 72 bp | TTGGAATTTTTAGTATGGGCAAGGGTGTGCAAGTCTTaGATTTCTACAAACAATGAGGGACAAGAAAGGAAG | + |
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Preference number: 3 (lower is better) Translates to: LEFLVWARVCKS*ISTNNEGQERK Trigger: CTTCCTTTCTTGTCCCTCATTGTTTGTAGAAATTCAAGACTTGCACACCCTTGCCCATACTAAAAATTCCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR TCA 72 bp | AAAAGCACTTATACATTAAGAGTGTACACTGCTCAATaGCTTACAACATCATGGTGTGGCTTCTGTTTTCTA | + |
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Preference number: 3 (lower is better) Translates to: KSTYTLRVYTAQ*LTTSWCGFCFL Trigger: TAGAAAACAGAAGCCACACCATGATGTTGTAAGTCATTGAGCAGTGTACACTCTTAATGTATAAGTGCTTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR CCA 90 bp | AACACTGCCTATGGAACAAGAAGGAGGAGGAGGAGGAAGAGGAAGAAGAGGAGGACCTGCCCCTGGCATTaGCTGGCCCATCTGCATTTG | + |
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Preference number: 4 (lower is better) Translates to: NTAYGTRRRRRRKRKKRRTCPWH*LAHLHL Trigger: CAAATGCAGATGGGCCAGCCAATGCCAGGGGCAGGT...CCTCCTCTTCTTCCTCTTCCTCCTCCTCCTCCTTCTTGTTCCATAGGCAGTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR GCA 90 bp | CAAAAGACAGCACAAAGTGCAGCTGTCCCCTCTGACTCACTCCTAGAAACACCCTGGGTCAAGCATCTCTaGAGTTCCTCAGCATCCACC | + |
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Preference number: 4 (lower is better) Translates to: QKTAQSAAVPSDSLLETPWVKHL*SSSAST Trigger: GGTGGATGCTGAGGAACTGCAGAGATGCTTGACCCA...GGGTGTTTCTAGGAGTGAGTCAGAGGGGACAGCTGCACTTTGTGCTGTCTTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR TCA 90 bp | AACACTGCCTATGGAACAAGAAGGAGGAGGAGGAGGAAGAGGAAGAAGAGGAGGTCTACCGTGCCACTTTaGTCTTGGTCAATGGTCATG | + |
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Preference number: 4 (lower is better) Translates to: NTAYGTRRRRRRKRKKRRSTVPL*SWSMVM Trigger: CATGACCATTGACCAAGATCAAAGTGGCACGGTAGA...CCTCCTCTTCTTCCTCTTCCTCCTCCTCCTCCTTCTTGTTCCATAGGCAGTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR TCA 90 bp | ATTTTAGGTAGTCCAGTCTGTTTCAATGAAGCAGAAGGATTCGCAGTCTGTCTCTCCACCTCACCATCCTaGCCAGCAACAGCTGTGAAA | + |
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Preference number: 4 (lower is better) Translates to: ILGSPVCFNEAEGFAVCLSTSPS*PATAVK Trigger: TTTCACAGCTGTTGCTGGTCAGGATGGTGAGGTGGA...GAGACAGACTGCGAATCCTTCTGCTTCATTGAAACAGACTGGACTACCTAAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR GCA 90 bp | TCTGTACCTTCAATGGTTCCCTTAATATTCCTTCAGGCTACTGACTATGTGGTCATGGTCATGAAGTTCTaGTTCCAGGCATTAAGAGCG | + |
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Preference number: 4 (lower is better) Translates to: SVPSMVPLIFLQATDYVVMVMKF*FQALRA Trigger: CGCTCTTAATGCCTGGAAGCAGAACTTCATGACCAT...GACCACATAGTCAGTAGCCTGAAGGAATATTAAGGGAACCATTGAAGGTACAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR TCA 90 bp | AGCAACATTTCAAGAGAGCGTGCATATATCTGCAATGTCATAACTTTTCCAAAACTGGAATCTGACCACTaGAGTTTCCAAACGCCCCTC | + |
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Preference number: 4 (lower is better) Translates to: SNISRERAYICNVITFPKLESDH*SFQTPL Trigger: GAGGGGCGTTTGGAAACTTCAGTGGTCAGATTCCAG...TTTTGGAAAAGTTATGACATTGCAGATATATGCACGCTCTCTTGAAATGTTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR CCA 90 bp | TCTGTACCTTCAATGGTTCCCTTAATATTCCTTCAGGCTACTGACTATGTGGTCATCCCTTGTTGCAAGTaGTCTCTTCGCCTAAAGAAA | + |
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Preference number: 4 (lower is better) Translates to: SVPSMVPLIFLQATDYVVIPCCK*SLRLKK Trigger: TTTCTTTAGGCGAAGAGACCACTTGCAACAAGGGAT...GACCACATAGTCAGTAGCCTGAAGGAATATTAAGGGAACCATTGAAGGTACAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR GCA 90 bp | CTCCTAGAAACACCCACAGACACAAACAACATCACAAGTATAACTTGTAGCCTTCATGATGTTCTACCGTaGCACTTTGATCTTGGTCAA | + |
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Preference number: 4 (lower is better) Translates to: LLETPTDTNNITSITCSLHDVLP*HFDLGQ Trigger: TTGACCAAGATCAAAGTGGCACGGTAGAACATCATG...AAGGCTACAAGTTATACTTGTGATGTTGTTTGTGTCTGTGGGTGTTTCTAGGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR TCA 90 bp | AGACAACTTAATGCAAAGAACCCGGTAACCACTGAAATCTCTATAGAAAATTTCTGCATGCCTGGAATCTaGCCACTGAAGTTTCCAAAC | + |
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Preference number: 4 (lower is better) Translates to: RQLNAKNPVTTEISIENFCMPGI*PLKFPN Trigger: GTTTGGAAACTTCAGTGGTCAGATTCCAGGCATGCA...GAAATTTTCTATAGAGATTTCAGTGGTTACCGGGTTCTTTGCATTAAGTTGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR TCA 90 bp | AGCAACATTTCAAGAGAGCGTGCATATATCTGCAATGTCATAACTTTTCCAAAATGCAGGTTTCCAAACTaGAAGGTGCGTAAGTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: SNISRERAYICNVITFPKCRFPN*KVRKFH Trigger: GTGGAACTTACGCACCTTTCAGTTTGGAAACCTGCA...TTTTGGAAAAGTTATGACATTGCAGATATATGCACGCTCTCTTGAAATGTTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR TCA 90 bp | AGACAACTTAATGCAAAGAACCCGGTAACCACTGAAATCTCTATAGAAAATTTCTCTTGCTGTAGCGTCTaGCAATTGCAGCTAATGTCT | + |
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Preference number: 4 (lower is better) Translates to: RQLNAKNPVTTEISIENFSCCSV*QLQLMS Trigger: AGACATTAGCTGCAATTGTCAGACGCTACAGCAAGA...GAAATTTTCTATAGAGATTTCAGTGGTTACCGGGTTCTTTGCATTAAGTTGTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| 3UTR CAA 72 bp | TTCCTTCAGGCTACTGACTATGTGGTCATGAACAAATaGTCAGAGGACAATGTGTATGCATTATTCATTGAT | + |
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Preference number: 4 (lower is better) Translates to: FLQATDYVVMNK*SEDNVYALFID Trigger: ATCAATGAATAATGCATACACATTGTCCTCTGACAATTTGTTCATGACCACATAGTCAGTAGCCTGAAGGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS CCA 90 bp | TCCAGGGTAGCCACCAGAGAACATATTGGGACCTGCCCCTGGCATTaGCTGGCCCATCTGCATTTGCATGCCTGGAATCTGACCACTGAA | + |
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Preference number: 5 (lower is better) Translates to: SRVATREHIGTCPWH*LAHLHLHAWNLTTE Trigger: TTCAGTGGTCAGATTCCAGGCATGCAAATGCAGATGGGCCAGCCAATGCCAGGGGCAGGTCCCAATATGTTCTCTGGTGGCTACCCTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS GCA 90 bp | ATAACCCAGGTATCCAGGGTAGCCACCAGAGAACATATTGGGACCTaGCCCTGGCATTGGCTGGCCCATCTGCATTTGCATGCCTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: ITQVSRVATREHIGT*PWHWLAHLHLHAWN Trigger: ATTCCAGGCATGCAAATGCAGATGGGCCAGCCAATGCCAGGGGCAGGTCCCAATATGTTCTCTGGTGGCTACCCTGGATACCTGGGTTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS CCA 90 bp | TGTCAGAATAACCCAGGTATCCAGGGTAGCCACCAGAGAACATATTaGGACCTGCCCCTGGCATTGGCTGGCCCATCTGCATTTGCATGC | + |
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Preference number: 5 (lower is better) Translates to: CQNNPGIQGSHQRTY*DLPLALAGPSAFAC Trigger: GCATGCAAATGCAGATGGGCCAGCCAATGCCAGGGGCAGGTCCCAATATGTTCTCTGGTGGCTACCCTGGATACCTGGGTTATTCTGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR CAA 90 bp | AACACTGCCTATGGAACAAGAAGGAGGAGGAGGAGGAAGAGGAAGAAGAGGAGGCCACCAGAGAACATATaGGGACCTGCCCCTGGCATT | + |
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Preference number: 5 (lower is better) Translates to: NTAYGTRRRRRRKRKKRRPPENI*GPAPGI Trigger: AATGCCAGGGGCAGGTCCCAATATGTTCTCTGGTGG...CCTCCTCTTCTTCCTCTTCCTCCTCCTCCTCCTTCTTGTTCCATAGGCAGTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR CAA 90 bp | AACACTGCCTATGGAACAAGAAGGAGGAGGAGGAGGAAGAGGAAGAAGAGGAGGCATAAGAGCGATGGCTaGACTCAGCTCATGATGTTC | + |
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Preference number: 5 (lower is better) Translates to: NTAYGTRRRRRRKRKKRRHKSDG*TQLMMF Trigger: GAACATCATGAGCTGAGTCAAGCCATCGCTCTTATG...CCTCCTCTTCTTCCTCTTCCTCCTCCTCCTCCTTCTTGTTCCATAGGCAGTGTT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR CAA 90 bp | CTCCTAGAAACACCCACAGACACAAACAACATCACAAGTATAACTTGTAGCCTTGACCTGCCCCTGGCATaGGCTGGCCCATCTGCATTT | + |
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Preference number: 5 (lower is better) Translates to: LLETPTDTNNITSITCSLDLPLA*AGPSAF Trigger: AAATGCAGATGGGCCAGCCAATGCCAGGGGCAGGTC...AAGGCTACAAGTTATACTTGTGATGTTGTTTGTGTCTGTGGGTGTTTCTAGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR CAA 90 bp | AACACTGCCTATGGAACAAGAAGGAGGAGGAGGAGGAAGAGGAAGAAGAGGAGGGAAATTCACAATCCCTaGTTGCAAGTGGTCTCTTCG | + |
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Preference number: 5 (lower is better) Translates to: NTAYGTRRRRRRKRKKRREIHNP*LQVVSS Trigger: CGAAGAGACCACTTGCAACAAGGGATTGTGAATTTC...CCTCCTCTTCTTCCTCTTCCTCCTCCTCCTCCTTCTTGTTCCATAGGCAGTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS-3UTR CAA 90 bp | CACTGGCCACGAACATGTGCTATGTCCTCTGATGGTTTAATCAAAACCCAAAAGAGCTCCTTGAATTCGTaGAACCCCATTTTTCCTGTG | + |
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Preference number: 5 (lower is better) Translates to: HWPRTCAMSSDGLIKTQKSSLNS*NPIFPV Trigger: CACAGGAAAAATGGGGTTCAACGAATTCAAGGAGCT...CTTTTGGGTTTTGATTAAACCATCAGAGGACATAGCACATGTTCGTGGCCAGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS CCA 72 bp | AGGGTAGCCACCAGAGAACATATTGGGACCTGCCCCTaGCATTGGCTGGCCCATCTGCATTTGCATGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: RVATREHIGTCP*HWLAHLHLHAW Trigger: CCAGGCATGCAAATGCAGATGGGCCAGCCAATGCCAGGGGCAGGTCCCAATATGTTCTCTGGTGGCTACCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS TCA 72 bp | GGCCCATCTGCATTTGCATGCCTGGAATCTGACCACTaGAGTTTCCAAACGCCCCTCCGTATCCCGGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: GPSAFACLESDH*SFQTPLRIPGR Trigger: CCTACCCGGGATACGGAGGGGCGTTTGGAAACTTCAGTGGTCAGATTCCAGGCATGCAAATGCAGATGGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS CCA 72 bp | GCCACCAGAGAACATATTGGGACCTGCCCCTGGCATTaGCTGGCCCATCTGCATTTGCATGCCTGGAATCTG | + |
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Preference number: 6 (lower is better) Translates to: ATREHIGTCPWH*LAHLHLHAWNL Trigger: CAGATTCCAGGCATGCAAATGCAGATGGGCCAGCCAATGCCAGGGGCAGGTCCCAATATGTTCTCTGGTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS CAA 90 bp | GAACATATTGGGACCTGCCCCTGGCATTGGCTGGCCCATCTGCATTaGCATGCCTGGAATCTGACCACTGAAGTTTCCAAACGCCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: EHIGTCPWHWLAHLH*HAWNLTTEVSKRPS Trigger: GGAGGGGCGTTTGGAAACTTCAGTGGTCAGATTCCAGGCATGCAAATGCAGATGGGCCAGCCAATGCCAGGGGCAGGTCCCAATATGTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS TCA 72 bp | CAGCATCCACCTCACCATCCTGACCAGCAACAGCTGTaGAATAAGTCCACATGGAGTCGTCGGCAGGGGAGT | + |
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Preference number: 6 (lower is better) Translates to: QHPPHHPDQQQL*NKSTWSRRQGS Trigger: ACTCCCCTGCCGACGACTCCATGTGGACTTATTTCACAGCTGTTGCTGGTCAGGATGGTGAGGTGGATGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS GCA 72 bp | GTATCCAGGGTAGCCACCAGAGAACATATTGGGACCTaGCCCTGGCATTGGCTGGCCCATCTGCATTTGCAT | + |
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Preference number: 6 (lower is better) Translates to: VSRVATREHIGT*PWHWLAHLHLH Trigger: ATGCAAATGCAGATGGGCCAGCCAATGCCAGGGGCAGGTCCCAATATGTTCTCTGGTGGCTACCCTGGATAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS CAA 72 bp | GGGACCTGCCCCTGGCATTGGCTGGCCCATCTGCATTaGCATGCCTGGAATCTGACCACTGAAGTTTCCAAA | + |
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Preference number: 6 (lower is better) Translates to: GTCPWHWLAHLH*HAWNLTTEVSK Trigger: TTTGGAAACTTCAGTGGTCAGATTCCAGGCATGCAAATGCAGATGGGCCAGCCAATGCCAGGGGCAGGTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS CAA 72 bp | CTGTGGACTCAACCTGTAGCCCATAAGAGCGATGGCTaGACTCAGCTCATGATGTTCTACCGTGCCACTTTG | + |
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Preference number: 6 (lower is better) Translates to: LWTQPVAHKSDG*TQLMMFYRATL Trigger: CAAAGTGGCACGGTAGAACATCATGAGCTGAGTCAAGCCATCGCTCTTATGGGCTACAGGTTGAGTCCACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS CAA 90 bp | GATGGCTTGACTCAGCTCATGATGTTCTACCGTGCCACTTTGATCTaGGTCAATGGTCATGAAGTTCTGCTTCCAGGCATTAAGAGCGGC | + |
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Preference number: 6 (lower is better) Translates to: DGLTQLMMFYRATLI*VNGHEVLLPGIKSG Trigger: GCCGCTCTTAATGCCTGGAAGCAGAACTTCATGACCATTGACCAAGATCAAAGTGGCACGGTAGAACATCATGAGCTGAGTCAAGCCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS CAA 90 bp | AAGAGCGATGGCTTGACTCAGCTCATGATGTTCTACCGTGCCACTTaGATCTTGGTCAATGGTCATGAAGTTCTGCTTCCAGGCATTAAG | + |
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Preference number: 6 (lower is better) Translates to: KSDGLTQLMMFYRAT*ILVNGHEVLLPGIK Trigger: CTTAATGCCTGGAAGCAGAACTTCATGACCATTGACCAAGATCAAAGTGGCACGGTAGAACATCATGAGCTGAGTCAAGCCATCGCTCTT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS CAA 72 bp | GGCTTGACTCAGCTCATGATGTTCTACCGTGCCACTTaGATCTTGGTCAATGGTCATGAAGTTCTGCTTCCA | + |
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Preference number: 6 (lower is better) Translates to: GLTQLMMFYRAT*ILVNGHEVLLP Trigger: TGGAAGCAGAACTTCATGACCATTGACCAAGATCAAAGTGGCACGGTAGAACATCATGAGCTGAGTCAAGCC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS CCA 72 bp | TCTTCATACATGAAATTCACAATCCCTTGTTGCAAGTaGTCTCTTCGCCTAAAGAAATCTGTCAGGGCGCGC | + |
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Preference number: 6 (lower is better) Translates to: SSYMKFTIPCCK*SLRLKKSVRAR Trigger: GCGCGCCCTGACAGATTTCTTTAGGCGAAGAGACCACTTGCAACAAGGGATTGTGAATTTCATGTATGAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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| CDS CAA 72 bp | ACTCAGCTCATGATGTTCTACCGTGCCACTTTGATCTaGGTCAATGGTCATGAAGTTCTGCTTCCAGGCATT | + |
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Preference number: 6 (lower is better) Translates to: TQLMMFYRATLI*VNGHEVLLPGI Trigger: AATGCCTGGAAGCAGAACTTCATGACCATTGACCAAGATCAAAGTGGCACGGTAGAACATCATGAGCTGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028257.3 |
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