Pregenerated sensors for G0S2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009633Ensembl transcript IDs: ENSMUST00000009777.4
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACAGTGCGTGCTGCACAGCAGCAAATCAGTCCCAGACCCCTTAGGTaGTCTGTGTGGGGTCAGTTCTGGATTCGGTGGCACCTTGAAACA | + |
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Preference number: 1 (lower is better) Translates to: TVRAAQQQISPRPLR*SVWGQFWIRWHLET Trigger: TGTTTCAAGGTGCCACCGAATCCAGAACTGACCCCACACAGATCACCTAAGGGGTCTGGGACTGATTTGCTGCTGTGCAGCACGCACTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| 3UTR CAA 90 bp | CCCTTAGGTGATCTGTGTGGGGTCAGTTCTGGATTCGGTGGCACCTaGAAACAGCATGTGACTCTGTTGCCCACCTGGGTCATGATCTGT | + |
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Preference number: 2 (lower is better) Translates to: PLGDLCGVSSGFGGT*KQHVTLLPTWVMIC Trigger: ACAGATCATGACCCAGGTGGGCAACAGAGTCACATGCTGTTTCAAGGTGCCACCGAATCCAGAACTGACCCCACACAGATCACCTAAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| 3UTR CAA 90 bp | GTCAGTTCTGGATTCGGTGGCACCTTGAAACAGCATGTGACTCTGTaGCCCACCTGGGTCATGATCTGTGTCTCCCTTCTCTGTCAGTCA | + |
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Preference number: 2 (lower is better) Translates to: VSSGFGGTLKQHVTL*PTWVMICVSLLCQS Trigger: TGACTGACAGAGAAGGGAGACACAGATCATGACCCAGGTGGGCAACAGAGTCACATGCTGTTTCAAGGTGCCACCGAATCCAGAACTGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| 3UTR TCA 72 bp | GCTGCACAGCAGCAAATCAGTCCCAGACCCCTTAGGTaGTCTGTGTGGGGTCAGTTCTGGATTCGGTGGCAC | + |
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Preference number: 3 (lower is better) Translates to: AAQQQISPRPLR*SVWGQFWIRWH Trigger: GTGCCACCGAATCCAGAACTGACCCCACACAGATCACCTAAGGGGTCTGGGACTGATTTGCTGCTGTGCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| 3UTR CCA 72 bp | GGCACCTTGAAACAGCATGTGACTCTGTTGCCCACCTaGGTCATGATCTGTGTCTCCCTTCTCTGTCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: GTLKQHVTLLPT*VMICVSLLCQS Trigger: TGACTGACAGAGAAGGGAGACACAGATCATGACCCAGGTGGGCAACAGAGTCACATGCTGTTTCAAGGTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS-3UTR GCA 90 bp | CAGTTCTGGATTCGGTGGCACCTTGAAACAGCATGTGACTCTGTTGCCCACCTGCAGGGTCGCCTCCTGTaGCTTGCCTCCTGCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: QFWIRWHLETACDSVAHLQGRLL*LASCQQ Trigger: CTGCTGGCAGGAGGCAAGGCACAGGAGGCGACCCTG...CAGGTGGGCAACAGAGTCACATGCTGTTTCAAGGTGCCACCGAATCCAGAACTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS-3UTR GCA 90 bp | TGGATTCGGTGGCACCTTGAAACAGCATGTGACTCTGTTGCCCACCTGGGTCATCTGTGCCTTGCCTCCTaGCAGCAGGGCCTGCTTGTG | + |
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Preference number: 4 (lower is better) Translates to: WIRWHLETACDSVAHLGHLCLAS*QQGLLV Trigger: CACAAGCAGGCCCTGCTGGCAGGAGGCAAGGCACAG...ATGACCCAGGTGGGCAACAGAGTCACATGCTGTTTCAAGGTGCCACCGAATCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS-3UTR GCA 90 bp | TGTGGGGTCAGTTCTGGATTCGGTGGCACCTTGAAACAGCATGTGACTCTGTTGCCTGCCAGCAGGGCCTaGTTGTGGAGGGACTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: CGVSSGFGGTLKQHVTLLPASRA*LWRDCC Trigger: ACAGCAGTCCCTCCACAAGCAGGCCCTGCTGGCAGG...CAACAGAGTCACATGCTGTTTCAAGGTGCCACCGAATCCAGAACTGACCCCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| 3UTR CAA 72 bp | GATCTGTGTGGGGTCAGTTCTGGATTCGGTGGCACCTaGAAACAGCATGTGACTCTGTTGCCCACCTGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: DLCGVSSGFGGT*KQHVTLLPTWV Trigger: GACCCAGGTGGGCAACAGAGTCACATGCTGTTTCAAGGTGCCACCGAATCCAGAACTGACCCCACACAGATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS-3UTR TCA 90 bp | ATAAAAAGCCTGTCTCCTTCTCTAATGCAAAGTGATAGCTCCTTGATTGCTCGCGACGGCTGGCGGCTGTaGAAGGGCTGCACACCGTCT | + |
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Preference number: 4 (lower is better) Translates to: IKSLSPSLMQSDSSLIARDGWRL*KGCTPS Trigger: AGACGGTGTGCAGCCCTTTCACAGCCGCCAGCCGTC...GCGAGCAATCAAGGAGCTATCACTTTGCATTAGAGAAGGAGACAGGCTTTTTAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS GCA 90 bp | CTGCACAGGGTCGCCTCCTGTGCCTTGCCTCCTGCCAGCAGGGCCTaGTTGTGGAGGGACTGCTGTTCACACGCTTCCCGCAGCTCCACC | + |
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Preference number: 5 (lower is better) Translates to: LHRVASCALPPASRA*LWRDCCSHASRSST Trigger: GGTGGAGCTGCGGGAAGCGTGTGAACAGCAGTCCCTCCACAAGCAGGCCCTGCTGGCAGGAGGCAAGGCACAGGAGGCGACCCTGTGCAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS TCA 90 bp | GCTCCACCACTGCAGCCTCTTGGTCGCGCAGACGGCTGGCGGCTGTaGAAGGGCTGCACACCGTCTCAACTAGGCCGAGCACCACACCGA | + |
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Preference number: 5 (lower is better) Translates to: APPLQPLGRADGWRL*KGCTPSQLGRAPHR Trigger: TCGGTGTGGTGCTCGGCCTAGTTGAGACGGTGTGCAGCCCTTTCACAGCCGCCAGCCGTCTGCGCGACCAAGAGGCTGCAGTGGTGGAGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS CCA 90 bp | GACTGCTGTTCACACGCTTCCCGCAGCTCCACCACTGCAGCCTCTTaGTCGCGCAGACGGCTGGCGGCTGTGAAAGGGCTGCACACCGTC | + |
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Preference number: 5 (lower is better) Translates to: DCCSHASRSSTTAAS*SRRRLAAVKGLHTV Trigger: GACGGTGTGCAGCCCTTTCACAGCCGCCAGCCGTCTGCGCGACCAAGAGGCTGCAGTGGTGGAGCTGCGGGAAGCGTGTGAACAGCAGTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS GCA 90 bp | CCGTCTCAACTAGGCCGAGCACCACACCGAAGAGCGCCAGCACACTaGCCAGCACGTATAGCTTCACTAGCTTCCCTCGGGGCTTCTGCG | + |
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Preference number: 5 (lower is better) Translates to: PSQLGRAPHRRAPAH*PARIASLASLGASA Trigger: CGCAGAAGCCCCGAGGGAAGCTAGTGAAGCTATACGTGCTGGGCAGTGTGCTGGCGCTCTTCGGTGTGGTGCTCGGCCTAGTTGAGACGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS-3UTR CAA 90 bp | ACCTTGAAACAGCATGTGACTCTGTTGCCCACCTGGGTCATGATCTGTGTCTCCGTCGCCTCCTGTGCCTaGCCTCCTGCCAGCAGGGCC | + |
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Preference number: 5 (lower is better) Translates to: TLKQHVTLLPTWVMICVSVASCA*PPASRA Trigger: GGCCCTGCTGGCAGGAGGCAAGGCACAGGAGGCGAC...GGAGACACAGATCATGACCCAGGTGGGCAACAGAGTCACATGCTGTTTCAAGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS GCA 90 bp | ACACTGCCCAGCACGTATAGCTTCACTAGCTTCCCTCGGGGCTTCTaGGCCATCATCTCCTTGGCCAGAGGGATCAGCTCCTGCACACTT | + |
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Preference number: 5 (lower is better) Translates to: TLPSTYSFTSFPRGF*AIISLARGISSCTL Trigger: AAGTGTGCAGGAGCTGATCCCTCTGGCCAAGGAGATGATGGCGCAGAAGCCCCGAGGGAAGCTAGTGAAGCTATACGTGCTGGGCAGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS GCA 72 bp | GGACTGCTGTTCACACGCTTCCCGCAGCTCCACCACTaGAGCCTCTTGGTCGCGCAGACGGCTGGCGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: GLLFTRFPQLHH*SLLVAQTAGGC Trigger: ACAGCCGCCAGCCGTCTGCGCGACCAAGAGGCTGCAGTGGTGGAGCTGCGGGAAGCGTGTGAACAGCAGTCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS GCA 72 bp | GTCGCCTCCTGTGCCTTGCCTCCTGCCAGCAGGGCCTaGTTGTGGAGGGACTGCTGTTCACACGCTTCCCGC | + |
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Preference number: 6 (lower is better) Translates to: VASCALPPASRA*LWRDCCSHASR Trigger: GCGGGAAGCGTGTGAACAGCAGTCCCTCCACAAGCAGGCCCTGCTGGCAGGAGGCAAGGCACAGGAGGCGAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS CAA 72 bp | GCCTCCTGTGCCTTGCCTCCTGCCAGCAGGGCCTGCTaGTGGAGGGACTGCTGTTCACACGCTTCCCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: ASCALPPASRAC*WRDCCSHASRS Trigger: GCTGCGGGAAGCGTGTGAACAGCAGTCCCTCCACAAGCAGGCCCTGCTGGCAGGAGGCAAGGCACAGGAGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS CAA 90 bp | GGACTGCTGTTCACACGCTTCCCGCAGCTCCACCACTGCAGCCTCTaGGTCGCGCAGACGGCTGGCGGCTGTGAAAGGGCTGCACACCGT | + |
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Preference number: 6 (lower is better) Translates to: GLLFTRFPQLHHCSL*VAQTAGGCERAAHR Trigger: ACGGTGTGCAGCCCTTTCACAGCCGCCAGCCGTCTGCGCGACCAAGAGGCTGCAGTGGTGGAGCTGCGGGAAGCGTGTGAACAGCAGTCC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS TCA 72 bp | CTGCAGCCTCTTGGTCGCGCAGACGGCTGGCGGCTGTaGAAGGGCTGCACACCGTCTCAACTAGGCCGAGCA | + |
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Preference number: 6 (lower is better) Translates to: LQPLGRADGWRL*KGCTPSQLGRA Trigger: TGCTCGGCCTAGTTGAGACGGTGTGCAGCCCTTTCACAGCCGCCAGCCGTCTGCGCGACCAAGAGGCTGCAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS GCA 72 bp | TTGCCTCCTGCCAGCAGGGCCTGCTTGTGGAGGGACTaGTGTTCACACGCTTCCCGCAGCTCCACCACTGCA | + |
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Preference number: 6 (lower is better) Translates to: LPPASRACLWRD*CSHASRSSTTA Trigger: TGCAGTGGTGGAGCTGCGGGAAGCGTGTGAACAGCAGTCCCTCCACAAGCAGGCCCTGCTGGCAGGAGGCAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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| CDS GCA 72 bp | CTAGGCCGAGCACCACACCGAAGAGCGCCAGCACACTaGCCAGCACGTATAGCTTCACTAGCTTCCCTCGGG | + |
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Preference number: 6 (lower is better) Translates to: LGRAPHRRAPAH*PARIASLASLG Trigger: CCCGAGGGAAGCTAGTGAAGCTATACGTGCTGGGCAGTGTGCTGGCGCTCTTCGGTGTGGTGCTCGGCCTAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009777.4 |
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