Pregenerated sensors for FXN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059363Ensembl transcript IDs: ENSMUST00000081333.11, ENSMUST00000123684.2
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCACAGAGCTGTCACACACGGTGTGACTATCTTCAGGAGCAGGTATaGGAAGGCAGACATTCAGCTACAGGAGGAGGCTGGGGGTCTTCA | + |
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Preference number: 1 (lower is better) Translates to: SQSCHTRCDYLQEQV*EGRHSATGGGWGSS Trigger: TGAAGACCCCCAGCCTCCTCCTGTAGCTGAATGTCTGCCTTCCCATACCTGCTCCTGAAGATAGTCACACCGTGTGTGACAGCTCTGTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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| 3UTR CCA 90 bp | ACTGCCCAGCATATAAGACTTTCTAAGAGACCAGAGGTCTCAGGTTaGGGAGCAAATGACATAATCCTAACAAATGTCTGTAGAAATGAA | + |
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Preference number: 1 (lower is better) Translates to: TAQHIRLSKRPEVSG*GANDIILTNVCRNE Trigger: TTCATTTCTACAGACATTTGTTAGGATTATGTCATTTGCTCCCCAACCTGAGACCTCTGGTCTCTTAGAAAGTCTTATATGCTGGGCAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGAGCAGGTATGGGAAGGCAGACATTCAGCTACAGGAGGAGGCTGGGGGTCTCCAGAGGTCTCAGGTTaGGGAGCAAATGACATAATC | + |
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Preference number: 2 (lower is better) Translates to: QEQVWEGRHSATGGGWGSPEVSG*GANDII Trigger: GATTATGTCATTTGCTCCCCAACCTGAGACCTCTGG...AGACCCCCAGCCTCCTCCTGTAGCTGAATGTCTGCCTTCCCATACCTGCTCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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| 3UTR-3UTR CCA 90 bp | CACCTGACAGTGTTTAATGTCTTGGAATCTGGCTGGCAGTCAAGTGCCTTTTCCGCTACAGGAGGAGGCTaGGGGTCTTCACCTGACAGT | + |
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Preference number: 2 (lower is better) Translates to: HLTVFNVLESGWQSSAFSATGGG*GSSPDS Trigger: ACTGTCAGGTGAAGACCCCCAGCCTCCTCCTGTAGC...GGAAAAGGCACTTGACTGCCAGCCAGATTCCAAGACATTAAACACTGTCAGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123684.2 |
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| 3UTR-3UTR CCA 90 bp | CTATCTTCAGGAGCAGGTATGGGAAGGCAGACATTCAGCTACAGGAGGAGGCTGCTTCAGGAGCAGGTATaGGAAGGCAGACATTCAGCT | + |
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Preference number: 2 (lower is better) Translates to: LSSGAGMGRQTFSYRRRLLQEQV*EGRHSA Trigger: AGCTGAATGTCTGCCTTCCCATACCTGCTCCTGAAG...CAGCCTCCTCCTGTAGCTGAATGTCTGCCTTCCCATACCTGCTCCTGAAGATAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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| 3UTR-3UTR GCA 90 bp | CACCTGACAGTGTTTAATGTCTTGGAATCTGGCTGGCAGTCAAGTGCCTTTTCCGAAGACAGCCAGATTTaGTTGTTTGGGGTCTGCTTG | + |
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Preference number: 2 (lower is better) Translates to: HLTVFNVLESGWQSSAFSEDSQI*LFGVCL Trigger: CAAGCAGACCCCAAACAAGCAAATCTGGCTGTCTTC...GGAAAAGGCACTTGACTGCCAGCCAGATTCCAAGACATTAAACACTGTCAGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123684.2 |
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| 3UTR-3UTR CCA 90 bp | AGACTTTCTAAGAGACCAGAGGTCTCAGGTTGGGGAGCAAATGACATAATCCTACTTCAGGAGCAGGTATaGGAAGGCAGACATTCAGCT | + |
|
Preference number: 2 (lower is better) Translates to: RLSKRPEVSGWGANDIILLQEQV*EGRHSA Trigger: AGCTGAATGTCTGCCTTCCCATACCTGCTCCTGAAG...TAGGATTATGTCATTTGCTCCCCAACCTGAGACCTCTGGTCTCTTAGAAAGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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| 3UTR CCA 72 bp | TGTCACACACGGTGTGACTATCTTCAGGAGCAGGTATaGGAAGGCAGACATTCAGCTACAGGAGGAGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: CHTRCDYLQEQV*EGRHSATGGGW Trigger: CCAGCCTCCTCCTGTAGCTGAATGTCTGCCTTCCCATACCTGCTCCTGAAGATAGTCACACCGTGTGTGACA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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| 3UTR-3UTR CAA 90 bp | TCTTCAGGAGCAGGTATGGGAAGGCAGACATTCAGCTACAGGAGGAGGCTGGGGACAGTGTTTAATGTCTaGGAATCTGGCTGGCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: SSGAGMGRQTFSYRRRLGTVFNV*ESGWQS Trigger: TGACTGCCAGCCAGATTCCAAGACATTAAACACTGT...CCCCAGCCTCCTCCTGTAGCTGAATGTCTGCCTTCCCATACCTGCTCCTGAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123684.2 |
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| 3UTR-3UTR CAA 90 bp | CACCTGACAGTGTTTAATGTCTTGGAATCTGGCTGGCAGTCAAGTGCCTTTTCCAGAAGACAGCCAGATTaGCTTGTTTGGGGTCTGCTT | + |
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Preference number: 3 (lower is better) Translates to: HLTVFNVLESGWQSSAFSRRQPD*LVWGLL Trigger: AAGCAGACCCCAAACAAGCAAATCTGGCTGTCTTCT...GGAAAAGGCACTTGACTGCCAGCCAGATTCCAAGACATTAAACACTGTCAGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123684.2 |
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| CDS-3UTR GCA 90 bp | CAAATGTCTGTAGAAATGAAGAGCCAGGTCCGGGGACAGGGTGGGAGGGAACACCCCAAGTTCCTCAAATaGACCACGCAGACGCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: QMSVEMKSQVRGQGGREHPKFLK*TTQTLC Trigger: GCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGG...GTGTTCCCTCCCACCCTGTCCCCGGACCTGGCTCTTCATTTCTACAGACATTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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| CDS-3UTR GCA 90 bp | GACTATCTTCAGGAGCAGGTATGGGAAGGCAGACATTCAGCTACAGGAGGAGGCCCCAAGTTCCTCAAATaGACCACGCAGACGCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: DYLQEQVWEGRHSATGGGPKFLK*TTQTLC Trigger: GCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGG...GCCTCCTCCTGTAGCTGAATGTCTGCCTTCCCATACCTGCTCCTGAAGATAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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| CDS-3UTR TCA 90 bp | CAGGAGCAGGTATGGGAAGGCAGACATTCAGCTACAGGAGGAGGCTGGGGGTCTAGACGCTCTGCTTTTTaGTGTTCAGAATCTGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: QEQVWEGRHSATGGGWGSRRSAF*CSESGG Trigger: ACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCT...AGACCCCCAGCCTCCTCCTGTAGCTGAATGTCTGCCTTCCCATACCTGCTCCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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| CDS-3UTR TCA 90 bp | CTTCAGGAGCAGGTATGGGAAGGCAGACATTCAGCTACAGGAGGAGGCTGGGGGAGACGCTCTGCTTTTTaGTGTTCAGAATCTGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: LQEQVWEGRHSATGGGWGRRSAF*CSESGG Trigger: ACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCT...CCCCCAGCCTCCTCCTGTAGCTGAATGTCTGCCTTCCCATACCTGCTCCTGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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| CDS-3UTR GCA 90 bp | CAGGAGCAGGTATGGGAAGGCAGACATTCAGCTACAGGAGGAGGCTGGGGGTCTACCACGCAGACGCTCTaGTTTTTGATGTTCAGAATC | + |
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Preference number: 4 (lower is better) Translates to: QEQVWEGRHSATGGGWGSTTQTL*FLMFRI Trigger: GATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGT...AGACCCCCAGCCTCCTCCTGTAGCTGAATGTCTGCCTTCCCATACCTGCTCCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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| CDS-3UTR GCA 90 bp | TGTGACTATCTTCAGGAGCAGGTATGGGAAGGCAGACATTCAGCTACAGGAGGAACCACGCAGACGCTCTaGTTTTTGATGTTCAGAATC | + |
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Preference number: 4 (lower is better) Translates to: CDYLQEQVWEGRHSATGGTTQTL*FLMFRI Trigger: GATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGT...TCCTCCTGTAGCTGAATGTCTGCCTTCCCATACCTGCTCCTGAAGATAGTCACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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| CDS-3UTR GCA 90 bp | CAGCATATAAGACTTTCTAAGAGACCAGAGGTCTCAGGTTGGGGAGCAAATGACGAAGACAGCCAGATTTaGTTGTTTGGGGTCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: QHIRLSKRPEVSGWGANDEDSQI*LFGVCL Trigger: CAAGCAGACCCCAAACAAGCAAATCTGGCTGTCTTC...GTCATTTGCTCCCCAACCTGAGACCTCTGGTCTCTTAGAAAGTCTTATATGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081333.11 |
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| CDS-3UTR CAA 90 bp | CAAATGTCTGTAGAAATGAAGAGCCAGGTCCGGGGACAGGGTGGGAGGGAACACAGAAGACAGCCAGATTaGCTTGTTTGGGGTCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: QMSVEMKSQVRGQGGREHRRQPD*LVWGLL Trigger: AAGCAGACCCCAAACAAGCAAATCTGGCTGTCTTCT...GTGTTCCCTCCCACCCTGTCCCCGGACCTGGCTCTTCATTTCTACAGACATTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081333.11 |
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| CDS-3UTR CAA 90 bp | ACACGGTGTGACTATCTTCAGGAGCAGGTATGGGAAGGCAGACATTCAGCTACACAGACGCTCTGCTTTTaGATGTTCAGAATCTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: TRCDYLQEQVWEGRHSATQTLCF*MFRIWR Trigger: CCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTG...TGTAGCTGAATGTCTGCCTTCCCATACCTGCTCCTGAAGATAGTCACACCGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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| CDS-3UTR CAA 90 bp | TGTGACTATCTTCAGGAGCAGGTATGGGAAGGCAGACATTCAGCTACAGGAGGACAGACGCTCTGCTTTTaGATGTTCAGAATCTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: CDYLQEQVWEGRHSATGGQTLCF*MFRIWR Trigger: CCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTG...TCCTCCTGTAGCTGAATGTCTGCCTTCCCATACCTGCTCCTGAAGATAGTCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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| CDS CAA 72 bp | TGGAGGTTCAAATGGGCGTGGCGGGTGGCGCCGGCGTaGACTGTGACATGTAGGCCTCGGCGGCCGCAGGTT | + |
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Preference number: 6 (lower is better) Translates to: WRFKWAWRVAPA*TVTCRPRRPQV Trigger: AACCTGCGGCCGCCGAGGCCTACATGTCACAGTCAACGCCGGCGCCACCCGCCACGCCCATTTGAACCTCCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081333.11 ENSMUST00000123684.2 |
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