Pregenerated sensors for FV1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070583

Ensembl transcript IDs: ENSMUST00000094481.2

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AGGCATAACCACTTTCCTCAGACAAGGATGGAGAGGCCAAGACAGTaGGCAACTCAGCTTCCTCAGACCCTTCAGAATCTATGTCCTCCC	+
Preference number: 5 (lower is better) Translates to: RHNHFPQTRMERPRQ*ATQLPQTLQNLCPP Trigger: GGGAGGACATAGATTCTGAAGGGTCTGAGGAAGCTGAGTTGCCCACTGTCTTGGCCTCTCCATCCTTGTCTGAGGAAAGTGGTTATGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS CCA 90 bp	GGTGCGTTCTTTAGACAAGGCATAACCACTTTCCTCAGACAAGGATaGAGAGGCCAAGACAGTGGGCAACTCAGCTTCCTCAGACCCTTC	+
Preference number: 5 (lower is better) Translates to: GAFFRQGITTFLRQG*RGQDSGQLSFLRPF Trigger: GAAGGGTCTGAGGAAGCTGAGTTGCCCACTGTCTTGGCCTCTCCATCCTTGTCTGAGGAAAGTGGTTATGCCTTGTCTAAAGAACGCACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS CCA 90 bp	CCTCATAGCTCTCGTGATGGGTACATCTTCCGGGCCCCTCCACTGTaGACAAGTAGCTTTTACACAAAGCCACTCTATCATTCCAAGTTC	+
Preference number: 5 (lower is better) Translates to: PHSSRDGYIFRAPPL*TSSFYTKPLYHSKF Trigger: GAACTTGGAATGATAGAGTGGCTTTGTGTAAAAGCTACTTGTCCACAGTGGAGGGGCCCGGAAGATGTACCCATCACGAGAGCTATGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS TCA 90 bp	CTGGTGACAGGTTCAGAAGTAACTAAGGATGTTGAAGACTGGATCTaGGGGGCATCTGCTTTGTCCTGCTGGGTGCGTTCTTTAGACAAG	+
Preference number: 5 (lower is better) Translates to: LVTGSEVTKDVEDWI*GASALSCWVRSLDK Trigger: CTTGTCTAAAGAACGCACCCAGCAGGACAAAGCAGATGCCCCTCAGATCCAGTCTTCAACATCCTTAGTTACTTCTGAACCTGTCACCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS TCA 90 bp	AACTCACTATCAAGGCTCAAAGGACCTAAACTGAGAAATTCAATCTaGTCCAGTATTGTGAGCCTCCCACCATTATCCCACACCCTTAAA	+
Preference number: 5 (lower is better) Translates to: NSLSRLKGPKLRNSI*SSIVSLPPLSHTLK Trigger: TTTAAGGGTGTGGGATAATGGTGGGAGGCTCACAATACTGGATCAGATTGAATTTCTCAGTTTAGGTCCTTTGAGCCTTGATAGTGAGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS GCA 90 bp	TTCCTTTGTTACTTTATCCAGAAATGCCAGAAGCAGCTCGCCAACTaGGTCATAGTCCCTAATCTTGCAGAAATGTTCAAAAGTATGGTA	+
Preference number: 5 (lower is better) Translates to: FLCYFIQKCQKQLAN*VIVPNLAEMFKSMV Trigger: TACCATACTTTTGAACATTTCTGCAAGATTAGGGACTATGACGCAGTTGGCGAGCTGCTTCTGGCATTTCTGGATAAAGTAACAAAGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS TCA 90 bp	CCTTTAGATCATTTATGTGCATTCGGAGCTGGGAAATTTCATCTCTaGATTGGTCCCTTTCCTTTGTTACTTTATCCAGAAATGCCAGAA	+
Preference number: 5 (lower is better) Translates to: PLDHLCAFGAGKFHL*IGPFPLLLYPEMPE Trigger: TTCTGGCATTTCTGGATAAAGTAACAAAGGAAAGGGACCAATTCAGAGATGAAATTTCCCAGCTCCGAATGCACATAAATGATCTAAAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS CCA 90 bp	AGGACACACTTAGAAGCCTTTAGATCATTTATGTGCATTCGGAGCTaGGAAATTTCATCTCTGAATTGGTCCCTTTCCTTTGTTACTTTA	+
Preference number: 5 (lower is better) Translates to: RTHLEAFRSFMCIRS*EISSLNWSLSFVTL Trigger: TAAAGTAACAAAGGAAAGGGACCAATTCAGAGATGAAATTTCCCAGCTCCGAATGCACATAAATGATCTAAAGGCTTCTAAGTGTGTCCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS GCA 72 bp	ATCCCAGGTTACCGGATCCCATTCTTTACCAATCAGTaGCCTCACCTTATCTGCAGACACTTTCCGGGCAGG	+
Preference number: 6 (lower is better) Translates to: IPGYRIPFFTNQ*PHLICRHFPGR Trigger: CCTGCCCGGAAAGTGTCTGCAGATAAGGTGAGGGCACTGATTGGTAAAGAATGGGATCCGGTAACCTGGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS GCA 72 bp	TCCTCAATAGAATACCACTCCAGGGTGTCAGGCGACTaGAGCTCTCTTGTAGTAGGCCATCTCTGGACCCAT	+
Preference number: 6 (lower is better) Translates to: SSIEYHSRVSGD*SSLVVGHLWTH Trigger: ATGGGTCCAGAGATGGCCTACTACAAGAGAGCTGCAGTCGCCTGACACCCTGGAGTGGTATTCTATTGAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS CCA 72 bp	CACTTTCCTCAGACAAGGATGGAGAGGCCAAGACAGTaGGCAACTCAGCTTCCTCAGACCCTTCAGAATCTA	+
Preference number: 6 (lower is better) Translates to: HFPQTRMERPRQ*ATQLPQTLQNL Trigger: TAGATTCTGAAGGGTCTGAGGAAGCTGAGTTGCCCACTGTCTTGGCCTCTCCATCCTTGTCTGAGGAAAGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS TCA 72 bp	GGTTCAGAAGTAACTAAGGATGTTGAAGACTGGATCTaGGGGGCATCTGCTTTGTCCTGCTGGGTGCGTTCT	+
Preference number: 6 (lower is better) Translates to: GSEVTKDVEDWI*GASALSCWVRS Trigger: AGAACGCACCCAGCAGGACAAAGCAGATGCCCCTCAGATCCAGTCTTCAACATCCTTAGTTACTTCTGAACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS CCA 72 bp	TTTAGACAAGGCATAACCACTTTCCTCAGACAAGGATaGAGAGGCCAAGACAGTGGGCAACTCAGCTTCCTC	+
Preference number: 6 (lower is better) Translates to: FRQGITTFLRQG*RGQDSGQLSFL Trigger: GAGGAAGCTGAGTTGCCCACTGTCTTGGCCTCTCCATCCTTGTCTGAGGAAAGTGGTTATGCCTTGTCTAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS CAA 90 bp	GAGAGAGAACCCCCACAGAGCCTACAGAAGTCAAGCCAGCTGCTGTaGGCTTTAAACTTAATTCTATTAGATCATGCAACTGAGCAGCCA	+
Preference number: 6 (lower is better) Translates to: EREPPQSLQKSSQLL*ALNLILLDHATEQP Trigger: TGGCTGCTCAGTTGCATGATCTAATAGAATTAAGTTTAAAGCCAACAGCAGCTGGCTTGACTTCTGTAGGCTCTGTGGGGGTTCTCTCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS TCA 72 bp	TCAAGGCTCAAAGGACCTAAACTGAGAAATTCAATCTaGTCCAGTATTGTGAGCCTCCCACCATTATCCCAC	+
Preference number: 6 (lower is better) Translates to: SRLKGPKLRNSI*SSIVSLPPLSH Trigger: GTGGGATAATGGTGGGAGGCTCACAATACTGGATCAGATTGAATTTCTCAGTTTAGGTCCTTTGAGCCTTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS CAA 72 bp	CCCCCACAGAGCCTACAGAAGTCAAGCCAGCTGCTGTaGGCTTTAAACTTAATTCTATTAGATCATGCAACT	+
Preference number: 6 (lower is better) Translates to: PPQSLQKSSQLL*ALNLILLDHAT Trigger: AGTTGCATGATCTAATAGAATTAAGTTTAAAGCCAACAGCAGCTGGCTTGACTTCTGTAGGCTCTGTGGGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS GCA 72 bp	TACTTTATCCAGAAATGCCAGAAGCAGCTCGCCAACTaGGTCATAGTCCCTAATCTTGCAGAAATGTTCAAA	+
Preference number: 6 (lower is better) Translates to: YFIQKCQKQLAN*VIVPNLAEMFK Trigger: TTTGAACATTTCTGCAAGATTAGGGACTATGACGCAGTTGGCGAGCTGCTTCTGGCATTTCTGGATAAAGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS GCA 72 bp	CCCAGGACACACTTAGAAGCCTTTAGATCATTTATGTaGATTCGGAGCTGGGAAATTTCATCTCTGAATTGG	+
Preference number: 6 (lower is better) Translates to: PRTHLEAFRSFM*IRSWEISSLNW Trigger: CCAATTCAGAGATGAAATTTCCCAGCTCCGAATGCACATAAATGATCTAAAGGCTTCTAAGTGTGTCCTGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS TCA 72 bp	GTTGGCTTTAAACTTAATTCTATTAGATCATGCAACTaGGCAGCCACGCTCCCCACTGTTATGTCCTTTATA	+
Preference number: 6 (lower is better) Translates to: VGFKLNSIRSCN*AATLPTVMSFI Trigger: TATAAAGGACATAACAGTGGGGAGCGTGGCTGCTCAGTTGCATGATCTAATAGAATTAAGTTTAAAGCCAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094481.2
CDS CCA 72 bp	TTAGAAGCCTTTAGATCATTTATGTGCATTCGGAGCTaGGAAATTTCATCTCTGAATTGGTCCCTTTCCTTT	+
Preference number: 6 (lower is better) Translates to: LEAFRSFMCIRS*EISSLNWSLSF Trigger: AAAGGAAAGGGACCAATTCAGAGATGAAATTTCCCAGCTCCGAATGCACATAAATGATCTAAAGGCTTCTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094481.2