RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FSCB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043060

Ensembl transcript IDs: ENSMUST00000059833.8

Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp CTGAACTTCTGTGGGAACATCATGTGTAGGGCTCTCCTCAGTTGGTaGAGGTGGGACTTCTGCAAGGCCCTCTTCAGCTGCTGGAGATTG +
Preference number: 5 (lower is better)
Translates to: LNFCGNIMCRALLSW*RWDFCKALFSCWRL
Trigger: CAATCTCCAGCAGCTGAAGAGGGCCTTGCAGAAGTCCCACCTCCACCAACTGAGGAGAGCCCTACACATGATGTTCCCACAGAAGTTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 90 bp AACCTGAACTTCTGTGGGAACATCATGTGTAGGGCTCTCCTCAGTTaGTGGAGGTGGGACTTCTGCAAGGCCCTCTTCAGCTGCTGGAGA +
Preference number: 5 (lower is better)
Translates to: NLNFCGNIMCRALLS*WRWDFCKALFSCWR
Trigger: TCTCCAGCAGCTGAAGAGGGCCTTGCAGAAGTCCCACCTCCACCAACTGAGGAGAGCCCTACACATGATGTTCCCACAGAAGTTCAGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 90 bp TTCTGTGGGAACATCATGTGTAGGGCTCTCCTCAGTTGGTGGAGGTaGGACTTCTGCAAGGCCCTCTTCAGCTGCTGGAGATTGAACTTC +
Preference number: 5 (lower is better)
Translates to: FCGNIMCRALLSWWR*DFCKALFSCWRLNF
Trigger: GAAGTTCAATCTCCAGCAGCTGAAGAGGGCCTTGCAGAAGTCCCACCTCCACCAACTGAGGAGAGCCCTACACATGATGTTCCCACAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 90 bp GTGGCTGTCTCAGCTGCAGAGGTCTCTTCAGCTGGAGATGGTGCTTaGATAGGGATCTCCTCTGTCAAGAAGAGCTCTCCTTTAACTGTG +
Preference number: 5 (lower is better)
Translates to: VAVSAAEVSSAGDGA*IGISSVKKSSPLTV
Trigger: CACAGTTAAAGGAGAGCTCTTCTTGACAGAGGAGATCCCTATCCAAGCACCATCTCCAGCTGAAGAGACCTCTGCAGCTGAGACAGCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 90 bp TGTAGTGGCTGTCTCAGCTGCAGAGGTCTCTTCAGCTGGAGATGGTaGTTGGATAGGGATCTCCTCTGTCAAGAAGAGCTCTCCTTTAAC +
Preference number: 5 (lower is better)
Translates to: CSGCLSCRGLFSWRW*LDRDLLCQEELSFN
Trigger: GTTAAAGGAGAGCTCTTCTTGACAGAGGAGATCCCTATCCAAGCACCATCTCCAGCTGAAGAGACCTCTGCAGCTGAGACAGCCACTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 90 bp AGTTGTAGTGGCTGTCTCAGCTGCAGAGGTCTCTTCAGCTGGAGATaGTGCTTGGATAGGGATCTCCTCTGTCAAGAAGAGCTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: SCSGCLSCRGLFSWR*CLDRDLLCQEELSF
Trigger: AAAGGAGAGCTCTTCTTGACAGAGGAGATCCCTATCCAAGCACCATCTCCAGCTGAAGAGACCTCTGCAGCTGAGACAGCCACTACAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 90 bp TTTTGCAGTTGTAGTGGCTGTCTCAGCTGCAGAGGTCTCTTCAGCTaGAGATGGTGCTTGGATAGGGATCTCCTCTGTCAAGAAGAGCTC +
Preference number: 5 (lower is better)
Translates to: FCSCSGCLSCRGLFS*RWCLDRDLLCQEEL
Trigger: GAGCTCTTCTTGACAGAGGAGATCCCTATCCAAGCACCATCTCCAGCTGAAGAGACCTCTGCAGCTGAGACAGCCACTACAACTGCAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 90 bp CTGTATATCCACAACGTCTTTTGCAGTTGTAGTGGCTGTCTCAGCTaGAGAGGTCTCTTCAGCTGGAGATGGTGCTTGGATAGGGATCTC +
Preference number: 5 (lower is better)
Translates to: LYIHNVFCSCSGCLS*RGLFSWRWCLDRDL
Trigger: GAGATCCCTATCCAAGCACCATCTCCAGCTGAAGAGACCTCTGCAGCTGAGACAGCCACTACAACTGCAAAAGACGTTGTGGATATACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 90 bp AGAAAGCTTATCAGCTGGTGGAGCCTGTATATCCACAACGTCTTTTaGAGTTGTAGTGGCTGTCTCAGCTGCAGAGGTCTCTTCAGCTGG +
Preference number: 5 (lower is better)
Translates to: RKLISWWSLYIHNVF*SCSGCLSCRGLFSW
Trigger: CCAGCTGAAGAGACCTCTGCAGCTGAGACAGCCACTACAACTGCAAAAGACGTTGTGGATATACAGGCTCCACCAGCTGATAAGCTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 90 bp GATAAAGGTAGGACCTGTCCAGGACTTTCCTTAGCTTGTGGAACCTaGACTTCTGTGGGAACATCATGTGTAGGGCTCTCCTCAGTTGGT +
Preference number: 5 (lower is better)
Translates to: DKGRTCPGLSLACGT*TSVGTSCVGLSSVG
Trigger: ACCAACTGAGGAGAGCCCTACACATGATGTTCCCACAGAAGTTCAGGTTCCACAAGCTAAGGAAAGTCCTGGACAGGTCCTACCTTTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 90 bp CGAAGGATGAACAGCAGAATCCTCTCTTCCAGTATCTGCCTCAGATaGTGGAAGTGGAGCTTCAATAGGGTTTTCTGCTATTGGAGCACC +
Preference number: 5 (lower is better)
Translates to: RRMNSRILSSSICLR*WKWSFNRVFCYWST
Trigger: GGTGCTCCAATAGCAGAAAACCCTATTGAAGCTCCACTTCCAGCATCTGAGGCAGATACTGGAAGAGAGGATTCTGCTGTTCATCCTTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 90 bp AGGATGAACAGCAGAATCCTCTCTTCCAGTATCTGCCTCAGATGCTaGAAGTGGAGCTTCAATAGGGTTTTCTGCTATTGGAGCACCCTC +
Preference number: 5 (lower is better)
Translates to: RMNSRILSSSICLRC*KWSFNRVFCYWSTL
Trigger: GAGGGTGCTCCAATAGCAGAAAACCCTATTGAAGCTCCACTTCCAGCATCTGAGGCAGATACTGGAAGAGAGGATTCTGCTGTTCATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 90 bp AGGCTGTGTTTCAACAGTGTCCTCTCTTGCAGGATTTTCATCAGCTaGAAGAGCCTGAGATTCAGCTGGTACACCTATTGCAATGTCCTC +
Preference number: 5 (lower is better)
Translates to: RLCFNSVLSCRIFIS*KSLRFSWYTYCNVL
Trigger: GAGGACATTGCAATAGGTGTACCAGCTGAATCTCAGGCTCTTCCAGCTGATGAAAATCCTGCAAGAGAGGACACTGTTGAAACACAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 90 bp TCTAGAGGAAGACTTTCTAAAGGAGCCTTCTCAAAGGATGGAGGCTaGACTTGTGCAGAGGCTTCTTCAGCAGTGGACTCACCTGATAAA +
Preference number: 5 (lower is better)
Translates to: SRGRLSKGAFSKDGG*TCAEASSAVDSPDK
Trigger: TTTATCAGGTGAGTCCACTGCTGAAGAAGCCTCTGCACAAGTTCAGCCTCCATCCTTTGAGAAGGCTCCTTTAGAAAGTCTTCCTCTAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 90 bp GAGATGTCTGCTACCTGGGACAATCGATGTTCTTTTAGTAGAACCTaGTCTGCAGGGGTTTGTTCTGAAGGTGGAAGTGGATCTTCAGCA +
Preference number: 5 (lower is better)
Translates to: EMSATWDNRCSFSRT*SAGVCSEGGSGSSA
Trigger: TGCTGAAGATCCACTTCCACCTTCAGAACAAACCCCTGCAGATCAGGTTCTACTAAAAGAACATCGATTGTCCCAGGTAGCAGACATCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 90 bp AGGACTAATATCAGCAGGAGCCTCTACAGAAGAAAGCTTATCAGCTaGTGGAGCCTGTATATCCACAACGTCTTTTGCAGTTGTAGTGGC +
Preference number: 5 (lower is better)
Translates to: RTNISRSLYRRKLIS*WSLYIHNVFCSCSG
Trigger: GCCACTACAACTGCAAAAGACGTTGTGGATATACAGGCTCCACCAGCTGATAAGCTTTCTTCTGTAGAGGCTCCTGCTGATATTAGTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 90 bp TCTTCTGAGACCACTTCGGGAAAGCCTTCCTCAGCTGGTAGAGGCTaGTTTTCAACTGGTGACATTTCTGTAGGAATATCGTCAGTTTGT +
Preference number: 5 (lower is better)
Translates to: SSETTSGKPSSAGRG*FSTGDISVGISSVC
Trigger: ACAAACTGACGATATTCCTACAGAAATGTCACCAGTTGAAAATCAGCCTCTACCAGCTGAGGAAGGCTTTCCCGAAGTGGTCTCAGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 90 bp ACTGGTGGGTCTGCTTGTTGGAATCTCTACTTCTGGAATACTCTGTaGCAATTCAGGAGCTATTTCTCCAACACCAGCTGTGTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: TGGSACWNLYFWNTL*QFRSYFSNTSCVFF
Trigger: GAAGAAAACACAGCTGGTGTTGGAGAAATAGCTCCTGAATTGCCACAGAGTATTCCAGAAGTAGAGATTCCAACAAGCAGACCCACCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 90 bp ACTAATATCAGCAGGAGCCTCTACAGAAGAAAGCTTATCAGCTGGTaGAGCCTGTATATCCACAACGTCTTTTGCAGTTGTAGTGGCTGT +
Preference number: 5 (lower is better)
Translates to: TNISRSLYRRKLISW*SLYIHNVFCSCSGC
Trigger: ACAGCCACTACAACTGCAAAAGACGTTGTGGATATACAGGCTCCACCAGCTGATAAGCTTTCTTCTGTAGAGGCTCCTGCTGATATTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 90 bp TTTCTTTTGGGCAAATGTATATCAGGCTCCAGTCACCAGTACAGCTaGTCTGTTGAGATCTGTCTATTAAATGACTGGTGGGTCTGCTTG +
Preference number: 5 (lower is better)
Translates to: FLLGKCISGSSHQYS*SVEICLLNDWWVCL
Trigger: CAAGCAGACCCACCAGTCATTTAATAGACAGATCTCAACAGACCAGCTGTACTGGTGACTGGAGCCTGATATACATTTGCCCAAAAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 90 bp TCAACTGGTGACATTTCTGTAGGAATATCGTCAGTTTGTAGAATCTaGATTTCTGCAGGAGCCTCGTCTGTAGGAGCTAATGACGAAGGA +
Preference number: 5 (lower is better)
Translates to: STGDISVGISSVCRI*ISAGASSVGANDEG
Trigger: TCCTTCGTCATTAGCTCCTACAGACGAGGCTCCTGCAGAAATTCAGATTCTACAAACTGACGATATTCCTACAGAAATGTCACCAGTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 90 bp TTATCTACCATTGGTTGGCTGGGTCGTCTTCTCCTTCTATATTCCTaGCTTCCTAATGATATAGGCTCTTCAGGTTCTTCACATTCTTCC +
Preference number: 5 (lower is better)
Translates to: LSTIGWLGRLLLLYS*LPNDIGSSGSSHSS
Trigger: GGAAGAATGTGAAGAACCTGAAGAGCCTATATCATTAGGAAGGCAGGAATATAGAAGGAGAAGACGACCCAGCCAACCAATGGTAGATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 90 bp TACAGCTGGTCTGTTGAGATCTGTCTATTAAATGACTGGTGGGTCTaGTTGTTGGAATCTCTACTTCTGGAATACTCTGTGGCAATTCAG +
Preference number: 5 (lower is better)
Translates to: YSWSVEICLLNDWWV*LLESLLLEYSVAIQ
Trigger: CTGAATTGCCACAGAGTATTCCAGAAGTAGAGATTCCAACAAGCAGACCCACCAGTCATTTAATAGACAGATCTCAACAGACCAGCTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 90 bp TCTGCTATTCCCAAGTCTTCAAGCATAGAGTCAGTTGTTAAAGCTTaGACTTTCTCAAGCACCTCTTCTGAGAATGGATCCAGATCTTCA +
Preference number: 5 (lower is better)
Translates to: SAIPKSSSIESVVKA*TFSSTSSENGSRSS
Trigger: TGAAGATCTGGATCCATTCTCAGAAGAGGTGCTTGAGAAAGTTCAAGCTTTAACAACTGACTCTATGCTTGAAGACTTGGGAATAGCAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 90 bp ACTTCAGCAGGTACTTCTTTAGAAGTCTCTTCAGACAGAGGATGTTaGACTTTACCAGATGTCTCTTCAGCAATAGTAGACTCTGCTATT +
Preference number: 5 (lower is better)
Translates to: TSAGTSLEVSSDRGC*TLPDVSSAIVDSAI
Trigger: AATAGCAGAGTCTACTATTGCTGAAGAGACATCTGGTAAAGTTCAACATCCTCTGTCTGAAGAGACTTCTAAAGAAGTACCTGCTGAAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 90 bp TTTATTAAAATAGCACTTTCTTCAAAGTCTGCAGCTATCGGAAAATaGACTTCAGCAGGTACTTCTTTAGAAGTCTCTTCAGACAGAGGA +
Preference number: 5 (lower is better)
Translates to: FIKIALSSKSAAIGK*TSAGTSLEVSSDRG
Trigger: TCCTCTGTCTGAAGAGACTTCTAAAGAAGTACCTGCTGAAGTTCATTTTCCGATAGCTGCAGACTTTGAAGAAAGTGCTATTTTAATAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp TGTGGGAACATCATGTGTAGGGCTCTCCTCAGTTGGTaGAGGTGGGACTTCTGCAAGGCCCTCTTCAGCTGC +
Preference number: 6 (lower is better)
Translates to: CGNIMCRALLSW*RWDFCKALFSC
Trigger: GCAGCTGAAGAGGGCCTTGCAGAAGTCCCACCTCCACCAACTGAGGAGAGCCCTACACATGATGTTCCCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 72 bp TGTAGGGCTCTCCTCAGTTGGTGGAGGTGGGACTTCTaGAAGGCCCTCTTCAGCTGCTGGAGATTGAACTTC +
Preference number: 6 (lower is better)
Translates to: CRALLSWWRWDF*KALFSCWRLNF
Trigger: GAAGTTCAATCTCCAGCAGCTGAAGAGGGCCTTGCAGAAGTCCCACCTCCACCAACTGAGGAGAGCCCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp TGCTGGAGGTGGAGCTTCTTCAGGTCTCTCTGCAGTTaGTGGAAGTGGAACTTCAGAAGAGCCCTCCTCAGC +
Preference number: 6 (lower is better)
Translates to: CWRWSFFRSLCS*WKWNFRRALLS
Trigger: GCTGAGGAGGGCTCTTCTGAAGTTCCACTTCCACCAACTGCAGAGAGACCTGAAGAAGCTCCACCTCCAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp TTCTGTGGGAACATCATGTGTAGGGCTCTCCTCAGTTaGTGGAGGTGGGACTTCTGCAAGGCCCTCTTCAGC +
Preference number: 6 (lower is better)
Translates to: FCGNIMCRALLS*WRWDFCKALFS
Trigger: GCTGAAGAGGGCCTTGCAGAAGTCCCACCTCCACCAACTGAGGAGAGCCCTACACATGATGTTCCCACAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 72 bp CTCAGTTGCTGGAGGTGGAGCTTCTTCAGGTCTCTCTaGAGTTGGTGGAAGTGGAACTTCAGAAGAGCCCTC +
Preference number: 6 (lower is better)
Translates to: LSCWRWSFFRSL*SWWKWNFRRAL
Trigger: GAGGGCTCTTCTGAAGTTCCACTTCCACCAACTGCAGAGAGACCTGAAGAAGCTCCACCTCCAGCAACTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp GGCTGTCTCAGCTGCAGAGGTCTCTTCAGCTGGAGATaGTGCTTGGATAGGGATCTCCTCTGTCAAGAAGAG +
Preference number: 6 (lower is better)
Translates to: GCLSCRGLFSWR*CLDRDLLCQEE
Trigger: CTCTTCTTGACAGAGGAGATCCCTATCCAAGCACCATCTCCAGCTGAAGAGACCTCTGCAGCTGAGACAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp TGGAACTTCTGCAGGCCCCTCTTCAGTTGGTTGAGGTaGAACTTCTGTAGGGCCCTCCTCAGTTGGTGTAGA +
Preference number: 6 (lower is better)
Translates to: WNFCRPLFSWLR*NFCRALLSWCR
Trigger: TCTACACCAACTGAGGAGGGCCCTACAGAAGTTCCACCTCAACCAACTGAAGAGGGGCCTGCAGAAGTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CAA 72 bp CTCAGCTGCAGAGGTCTCTTCAGCTGGAGATGGTGCTaGGATAGGGATCTCCTCTGTCAAGAAGAGCTCTCC +
Preference number: 6 (lower is better)
Translates to: LSCRGLFSWRWC*DRDLLCQEELS
Trigger: GGAGAGCTCTTCTTGACAGAGGAGATCCCTATCCAAGCACCATCTCCAGCTGAAGAGACCTCTGCAGCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CAA 72 bp TTGCTGGAGGTGGAGCTTCTTCAGGTCTCTCTGCAGTaGGTGGAAGTGGAACTTCAGAAGAGCCCTCCTCAG +
Preference number: 6 (lower is better)
Translates to: LLEVELLQVSLQ*VEVELQKSPPQ
Trigger: CTGAGGAGGGCTCTTCTGAAGTTCCACTTCCACCAACTGCAGAGAGACCTGAAGAAGCTCCACCTCCAGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 72 bp TGTCTCAGCTGCAGAGGTCTCTTCAGCTGGAGATGGTaGTTGGATAGGGATCTCCTCTGTCAAGAAGAGCTC +
Preference number: 6 (lower is better)
Translates to: CLSCRGLFSWRW*LDRDLLCQEEL
Trigger: GAGCTCTTCTTGACAGAGGAGATCCCTATCCAAGCACCATCTCCAGCTGAAGAGACCTCTGCAGCTGAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp TCAGCTGCAGAGGTCTCTTCAGCTGGAGATGGTGCTTaGATAGGGATCTCCTCTGTCAAGAAGAGCTCTCCT +
Preference number: 6 (lower is better)
Translates to: SAAEVSSAGDGA*IGISSVKKSSP
Trigger: AGGAGAGCTCTTCTTGACAGAGGAGATCCCTATCCAAGCACCATCTCCAGCTGAAGAGACCTCTGCAGCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp TGTAGTGGCTGTCTCAGCTGCAGAGGTCTCTTCAGCTaGAGATGGTGCTTGGATAGGGATCTCCTCTGTCAA +
Preference number: 6 (lower is better)
Translates to: CSGCLSCRGLFS*RWCLDRDLLCQ
Trigger: TTGACAGAGGAGATCCCTATCCAAGCACCATCTCCAGCTGAAGAGACCTCTGCAGCTGAGACAGCCACTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CAA 90 bp AGTGGCTGTCTCAGCTGCAGAGGTCTCTTCAGCTGGAGATGGTGCTaGGATAGGGATCTCCTCTGTCAAGAAGAGCTCTCCTTTAACTGT +
Preference number: 6 (lower is better)
Translates to: SGCLSCRGLFSWRWC*DRDLLCQEELSFNC
Trigger: ACAGTTAAAGGAGAGCTCTTCTTGACAGAGGAGATCCCTATCCAAGCACCATCTCCAGCTGAAGAGACCTCTGCAGCTGAGACAGCCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 72 bp AGGACCTGTCCAGGACTTTCCTTAGCTTGTGGAACCTaGACTTCTGTGGGAACATCATGTGTAGGGCTCTCC +
Preference number: 6 (lower is better)
Translates to: RTCPGLSLACGT*TSVGTSCVGLS
Trigger: GGAGAGCCCTACACATGATGTTCCCACAGAAGTTCAGGTTCCACAAGCTAAGGAAAGTCCTGGACAGGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 72 bp GCAGGAGCCTCGTCTGTAGGAGCTAATGACGAAGGATaGACAGCAGAATCCTCTCTTCCAGTATCTGCCTCA +
Preference number: 6 (lower is better)
Translates to: AGASSVGANDEG*TAESSLPVSAS
Trigger: TGAGGCAGATACTGGAAGAGAGGATTCTGCTGTTCATCCTTCGTCATTAGCTCCTACAGACGAGGCTCCTGC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 72 bp ATCAGCTGGTGGAGCCTGTATATCCACAACGTCTTTTaGAGTTGTAGTGGCTGTCTCAGCTGCAGAGGTCTC +
Preference number: 6 (lower is better)
Translates to: ISWWSLYIHNVF*SCSGCLSCRGL
Trigger: GAGACCTCTGCAGCTGAGACAGCCACTACAACTGCAAAAGACGTTGTGGATATACAGGCTCCACCAGCTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp GGCTCTCTTCAACCGATGTTAATTGTGCTTCCACAGTaGCTTCTTGTGCAGGAGCCCCCTCAGATAAAGGAA +
Preference number: 6 (lower is better)
Translates to: GSLQPMLIVLPQ*LLVQEPPQIKE
Trigger: TTCCTTTATCTGAGGGGGCTCCTGCACAAGAAGCCACTGTGGAAGCACAATTAACATCGGTTGAAGAGAGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp GGAGACTCTTCTACAGGGGTCTCAGGTGATAAAGGCTaGACATCAACAGAAGCCCTTTTAGGGCTCTCTTCA +
Preference number: 6 (lower is better)
Translates to: GDSSTGVSGDKG*TSTEALLGLSS
Trigger: TGAAGAGAGCCCTAAAAGGGCTTCTGTTGATGTCCAGCCTTTATCACCTGAGACCCCTGTAGAAGAGTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CAA 72 bp CAGCTGGAAGAGCCTGAGATTCAGCTGGTACACCTATaGCAATGTCCTCAGTTGGCAGAGGTTGCACTTCAA +
Preference number: 6 (lower is better)
Translates to: QLEEPEIQLVHL*QCPQLAEVALQ
Trigger: TTGAAGTGCAACCTCTGCCAACTGAGGACATTGCAATAGGTGTACCAGCTGAATCTCAGGCTCTTCCAGCTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 72 bp AGACTTTCTAAAGGAGCCTTCTCAAAGGATGGAGGCTaGACTTGTGCAGAGGCTTCTTCAGCAGTGGACTCA +
Preference number: 6 (lower is better)
Translates to: RLSKGAFSKDGG*TCAEASSAVDS
Trigger: TGAGTCCACTGCTGAAGAAGCCTCTGCACAAGTTCAGCCTCCATCCTTTGAGAAGGCTCCTTTAGAAAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 72 bp AGCTGGAAGAGCCTGAGATTCAGCTGGTACACCTATTaGAATGTCCTCAGTTGGCAGAGGTTGCACTTCAAA +
Preference number: 6 (lower is better)
Translates to: SWKSLRFSWYTY*NVLSWQRLHFK
Trigger: TTTGAAGTGCAACCTCTGCCAACTGAGGACATTGCAATAGGTGTACCAGCTGAATCTCAGGCTCTTCCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 72 bp CGAAGGATGAACAGCAGAATCCTCTCTTCCAGTATCTaGCTCAGATGCTGGAAGTGGAGCTTCAATAGGGTT +
Preference number: 6 (lower is better)
Translates to: RRMNSRILSSSI*LRCWKWSFNRV
Trigger: AACCCTATTGAAGCTCCACTTCCAGCATCTGAGGCAGATACTGGAAGAGAGGATTCTGCTGTTCATCCTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp ATCCTCTCTTCCAGTATCTGCCTCAGATGCTGGAAGTaGAGCTTCAATAGGGTTTTCTGCTATTGGAGCACC +
Preference number: 6 (lower is better)
Translates to: ILSSSICLRCWK*SFNRVFCYWST
Trigger: GGTGCTCCAATAGCAGAAAACCCTATTGAAGCTCCACTTCCAGCATCTGAGGCAGATACTGGAAGAGAGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CAA 72 bp CTTCTGCAGTCAGGTCTTCTACAGTTCCCTGTTCAGTaGATGGAGGCAGAACTTCTGAAGGAGCCACTTCTT +
Preference number: 6 (lower is better)
Translates to: LLQSGLLQFPVQ*MEAELLKEPLL
Trigger: AAGAAGTGGCTCCTTCAGAAGTTCTGCCTCCATCAACTGAACAGGGAACTGTAGAAGACCTGACTGCAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CAA 90 bp GAGCACCCTCAAATGATGAAGGCTGTGTTTCAACAGTGTCCTCTCTaGCAGGATTTTCATCAGCTGGAAGAGCCTGAGATTCAGCTGGTA +
Preference number: 6 (lower is better)
Translates to: EHPQMMKAVFQQCPL*QDFHQLEEPEIQLV
Trigger: TACCAGCTGAATCTCAGGCTCTTCCAGCTGATGAAAATCCTGCAAGAGAGGACACTGTTGAAACACAGCCTTCATCATTTGAGGGTGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 72 bp ACCACTTCGGGAAAGCCTTCCTCAGCTGGTAGAGGCTaGTTTTCAACTGGTGACATTTCTGTAGGAATATCG +
Preference number: 6 (lower is better)
Translates to: TTSGKPSSAGRG*FSTGDISVGIS
Trigger: CGATATTCCTACAGAAATGTCACCAGTTGAAAATCAGCCTCTACCAGCTGAGGAAGGCTTTCCCGAAGTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 72 bp GCTACCTGGGACAATCGATGTTCTTTTAGTAGAACCTaGTCTGCAGGGGTTTGTTCTGAAGGTGGAAGTGGA +
Preference number: 6 (lower is better)
Translates to: ATWDNRCSFSRT*SAGVCSEGGSG
Trigger: TCCACTTCCACCTTCAGAACAAACCCCTGCAGATCAGGTTCTACTAAAAGAACATCGATTGTCCCAGGTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp AGCAGGAGCCTCTACAGAAGAAAGCTTATCAGCTGGTaGAGCCTGTATATCCACAACGTCTTTTGCAGTTGT +
Preference number: 6 (lower is better)
Translates to: SRSLYRRKLISW*SLYIHNVFCSC
Trigger: ACAACTGCAAAAGACGTTGTGGATATACAGGCTCCACCAGCTGATAAGCTTTCTTCTGTAGAGGCTCCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp ATCAGCAGGAGCCTCTACAGAAGAAAGCTTATCAGCTaGTGGAGCCTGTATATCCACAACGTCTTTTGCAGT +
Preference number: 6 (lower is better)
Translates to: ISRSLYRRKLIS*WSLYIHNVFCS
Trigger: ACTGCAAAAGACGTTGTGGATATACAGGCTCCACCAGCTGATAAGCTTTCTTCTGTAGAGGCTCCTGCTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp TTCAACAGTGTCCTCTCTTGCAGGATTTTCATCAGCTaGAAGAGCCTGAGATTCAGCTGGTACACCTATTGC +
Preference number: 6 (lower is better)
Translates to: FNSVLSCRIFIS*KSLRFSWYTYC
Trigger: GCAATAGGTGTACCAGCTGAATCTCAGGCTCTTCCAGCTGATGAAAATCCTGCAAGAGAGGACACTGTTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp AGCAGAATCCTCTCTTCCAGTATCTGCCTCAGATGCTaGAAGTGGAGCTTCAATAGGGTTTTCTGCTATTGG +
Preference number: 6 (lower is better)
Translates to: SRILSSSICLRC*KWSFNRVFCYW
Trigger: CCAATAGCAGAAAACCCTATTGAAGCTCCACTTCCAGCATCTGAGGCAGATACTGGAAGAGAGGATTCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 72 bp AACAGCAGAATCCTCTCTTCCAGTATCTGCCTCAGATaGTGGAAGTGGAGCTTCAATAGGGTTTTCTGCTAT +
Preference number: 6 (lower is better)
Translates to: NSRILSSSICLR*WKWSFNRVFCY
Trigger: ATAGCAGAAAACCCTATTGAAGCTCCACTTCCAGCATCTGAGGCAGATACTGGAAGAGAGGATTCTGCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp GGCAAATGTATATCAGGCTCCAGTCACCAGTACAGCTaGTCTGTTGAGATCTGTCTATTAAATGACTGGTGG +
Preference number: 6 (lower is better)
Translates to: GKCISGSSHQYS*SVEICLLNDWW
Trigger: CCACCAGTCATTTAATAGACAGATCTCAACAGACCAGCTGTACTGGTGACTGGAGCCTGATATACATTTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CAA 90 bp AGCTGGTCTGTTGAGATCTGTCTATTAAATGACTGGTGGGTCTGCTaGTTGGAATCTCTACTTCTGGAATACTCTGTGGCAATTCAGGAG +
Preference number: 6 (lower is better)
Translates to: SWSVEICLLNDWWVC*LESLLLEYSVAIQE
Trigger: CTCCTGAATTGCCACAGAGTATTCCAGAAGTAGAGATTCCAACAAGCAGACCCACCAGTCATTTAATAGACAGATCTCAACAGACCAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp GTTATTTCAGTTTGCTGGGACTTATCTACCATTGGTTaGCTGGGTCGTCTTCTCCTTCTATATTCCTGCCTT +
Preference number: 6 (lower is better)
Translates to: VISVCWDLSTIG*LGRLLLLYSCL
Trigger: AAGGCAGGAATATAGAAGGAGAAGACGACCCAGCCAACCAATGGTAGATAAGTCCCAGCAAACTGAAATAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp TCTGCTTGTTGGAATCTCTACTTCTGGAATACTCTGTaGCAATTCAGGAGCTATTTCTCCAACACCAGCTGT +
Preference number: 6 (lower is better)
Translates to: SACWNLYFWNTL*QFRSYFSNTSC
Trigger: ACAGCTGGTGTTGGAGAAATAGCTCCTGAATTGCCACAGAGTATTCCAGAAGTAGAGATTCCAACAAGCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CAA 72 bp TGTTATTTCAGTTTGCTGGGACTTATCTACCATTGGTaGGCTGGGTCGTCTTCTCCTTCTATATTCCTGCCT +
Preference number: 6 (lower is better)
Translates to: CYFSLLGLIYHW*AGSSSPSIFLP
Trigger: AGGCAGGAATATAGAAGGAGAAGACGACCCAGCCAACCAATGGTAGATAAGTCCCAGCAAACTGAAATAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CAA 72 bp CAAATGATGAAGGCTGTGTTTCAACAGTGTCCTCTCTaGCAGGATTTTCATCAGCTGGAAGAGCCTGAGATT +
Preference number: 6 (lower is better)
Translates to: QMMKAVFQQCPL*QDFHQLEEPEI
Trigger: AATCTCAGGCTCTTCCAGCTGATGAAAATCCTGCAAGAGAGGACACTGTTGAAACACAGCCTTCATCATTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CAA 90 bp TGGTCTGTTGAGATCTGTCTATTAAATGACTGGTGGGTCTGCTTGTaGGAATCTCTACTTCTGGAATACTCTGTGGCAATTCAGGAGCTA +
Preference number: 6 (lower is better)
Translates to: WSVEICLLNDWWVCL*ESLLLEYSVAIQEL
Trigger: TAGCTCCTGAATTGCCACAGAGTATTCCAGAAGTAGAGATTCCAACAAGCAGACCCACCAGTCATTTAATAGACAGATCTCAACAGACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 72 bp CCCAAGTCTTCAAGCATAGAGTCAGTTGTTAAAGCTTaGACTTTCTCAAGCACCTCTTCTGAGAATGGATCC +
Preference number: 6 (lower is better)
Translates to: PKSSSIESVVKA*TFSSTSSENGS
Trigger: GGATCCATTCTCAGAAGAGGTGCTTGAGAAAGTTCAAGCTTTAACAACTGACTCTATGCTTGAAGACTTGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp TTCTGTTATTTCAGTTTGCTGGGACTTATCTACCATTaGTTGGCTGGGTCGTCTTCTCCTTCTATATTCCTG +
Preference number: 6 (lower is better)
Translates to: FCYFSLLGLIYH*LAGSSSPSIFL
Trigger: CAGGAATATAGAAGGAGAAGACGACCCAGCCAACCAATGGTAGATAAGTCCCAGCAAACTGAAATAACAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 72 bp GACATTTCTGTAGGAATATCGTCAGTTTGTAGAATCTaGATTTCTGCAGGAGCCTCGTCTGTAGGAGCTAAT +
Preference number: 6 (lower is better)
Translates to: DISVGISSVCRI*ISAGASSVGAN
Trigger: ATTAGCTCCTACAGACGAGGCTCCTGCAGAAATTCAGATTCTACAAACTGACGATATTCCTACAGAAATGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 72 bp GGATCTTCAGCAGGCATCTTTTCCACACGAAACTCTTaGATAGTAACCTCGTTAGTTTTTAAAGGCAGATCA +
Preference number: 6 (lower is better)
Translates to: GSSAGIFSTRNS*IVTSLVFKGRS
Trigger: TGATCTGCCTTTAAAAACTAACGAGGTTACTATGCAAGAGTTTCGTGTGGAAAAGATGCCTGCTGAAGATCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CAA 72 bp TTTCTGTTATTTCAGTTTGCTGGGACTTATCTACCATaGGTTGGCTGGGTCGTCTTCTCCTTCTATATTCCT +
Preference number: 6 (lower is better)
Translates to: FLLFQFAGTYLP*VGWVVFSFYIP
Trigger: AGGAATATAGAAGGAGAAGACGACCCAGCCAACCAATGGTAGATAAGTCCCAGCAAACTGAAATAACAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CAA 72 bp GAGATTCAGCTGGTACACCTATTGCAATGTCCTCAGTaGGCAGAGGTTGCACTTCAAATGGTAAATTATCTA +
Preference number: 6 (lower is better)
Translates to: EIQLVHLLQCPQ*AEVALQMVNYL
Trigger: TAGATAATTTACCATTTGAAGTGCAACCTCTGCCAACTGAGGACATTGCAATAGGTGTACCAGCTGAATCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 72 bp GGTACTTCTTTAGAAGTCTCTTCAGACAGAGGATGTTaGACTTTACCAGATGTCTCTTCAGCAATAGTAGAC +
Preference number: 6 (lower is better)
Translates to: GTSLEVSSDRGC*TLPDVSSAIVD
Trigger: GTCTACTATTGCTGAAGAGACATCTGGTAAAGTTCAACATCCTCTGTCTGAAGAGACTTCTAAAGAAGTACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 72 bp AACTTTACCAGATGTCTCTTCAGCAATAGTAGACTCTaGTATTCCCAAGTCTTCAAGCATAGAGTCAGTTGT +
Preference number: 6 (lower is better)
Translates to: NFTRCLFSNSRL*YSQVFKHRVSC
Trigger: ACAACTGACTCTATGCTTGAAGACTTGGGAATAGCAGAGTCTACTATTGCTGAAGAGACATCTGGTAAAGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CCA 72 bp AAAGTAGGTCTGTTGTTCTTTGTCCACTTTTTCTTTTaGGCAAATGTATATCAGGCTCCAGTCACCAGTACA +
Preference number: 6 (lower is better)
Translates to: KVGLLFFVHFFF*ANVYQAPVTST
Trigger: TGTACTGGTGACTGGAGCCTGATATACATTTGCCCAAAAGAAAAAGTGGACAAAGAACAACAGACCTACTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CAA 90 bp AGTCATATCCTGGACATGCTTTCTCTTCATCAAAGTTTTCTGAAGTaGAGAGGACAGCCTAAGAGACTCATATTCTTTTCGAGAGTAGTT +
Preference number: 6 (lower is better)
Translates to: SHILDMLSLHQSFLK*RGQPKRLIFFSRVV
Trigger: AACTACTCTCGAAAAGAATATGAGTCTCTTAGGCTGTCCTCTCAACTTCAGAAAACTTTGATGAAGAGAAAGCATGTCCAGGATATGACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 72 bp ATAGCACTTTCTTCAAAGTCTGCAGCTATCGGAAAATaGACTTCAGCAGGTACTTCTTTAGAAGTCTCTTCA +
Preference number: 6 (lower is better)
Translates to: IALSSKSAAIGK*TSAGTSLEVSS
Trigger: TGAAGAGACTTCTAAAGAAGTACCTGCTGAAGTTCATTTTCCGATAGCTGCAGACTTTGAAGAAAGTGCTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS CAA 72 bp AGGTACTTCTTTAGAAGTCTCTTCAGACAGAGGATGTaGAACTTTACCAGATGTCTCTTCAGCAATAGTAGA +
Preference number: 6 (lower is better)
Translates to: RYFFRSLFRQRM*NFTRCLFSNSR
Trigger: TCTACTATTGCTGAAGAGACATCTGGTAAAGTTCAACATCCTCTGTCTGAAGAGACTTCTAAAGAAGTACCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS TCA 72 bp ATAACTTCCACTTTTTCTTCCACAATAGGTTCTGTCTaGAGAGATTTGTCAGTCATATCCTGGACATGCTTT +
Preference number: 6 (lower is better)
Translates to: ITSTFSSTIGSV*RDLSVISWTCF
Trigger: AAAGCATGTCCAGGATATGACTGACAAATCTCTTCAGACAGAACCTATTGTGGAAGAAAAAGTGGAAGTTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8
CDS GCA 72 bp AAGAGAACCATTTATTTCAACCAAAGGATCTTCTTGTaGAATAGGAATTGTTTCTTCCTTCGACTTAGTCAT +
Preference number: 6 (lower is better)
Translates to: KRTIYFNQRIFL*NRNCFFLRLSH
Trigger: ATGACTAAGTCGAAGGAAGAAACAATTCCTATTGCACAAGAAGATCCTTTGGTTGAAATAAATGGTTCTCTT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059833.8