Pregenerated sensors for FRAT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067199Ensembl transcript IDs: ENSMUST00000087155.5
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGGTACTCGGTCACTGTCTCAAGGCAGTTTGTCTGCAAGCCAGGTaGAGGGGCAGGGGCGGTGGCCTCGGACGGGAAGCACACTCAGCA | + |
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Preference number: 1 (lower is better) Translates to: VVLGHCLKAVCLQAR*RGRGGGLGREAHSA Trigger: TGCTGAGTGTGCTTCCCGTCCGAGGCCACCGCCCCTGCCCCTCCACCTGGCTTGCAGACAAACTGCCTTGAGACAGTGACCGAGTACCAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 90 bp | CCTCGGACGGGAAGCACACTCAGCACTCGCCATCCCCACCTCCTCTaGGATGTGGCGGGAGCGTCCTTAGGGGACTCTTGCATTTGCAAA | + |
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Preference number: 1 (lower is better) Translates to: PRTGSTLSTRHPHLL*DVAGASLGDSCICK Trigger: TTTGCAAATGCAAGAGTCCCCTAAGGACGCTCCCGCCACATCCCAGAGGAGGTGGGGATGGCGAGTGCTGAGTGTGCTTCCCGTCCGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 90 bp | CCCATTAGAAGAGGCTGTGTGAGACTGTGTCCCAAGCTGTGTCCCTaGAGTGCCCATTATGTGGAATCTCCCCAATCCCCTACCCTGGCC | + |
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Preference number: 1 (lower is better) Translates to: PIRRGCVRLCPKLCP*SAHYVESPQSPTLA Trigger: GGCCAGGGTAGGGGATTGGGGAGATTCCACATAATGGGCACTCCAGGGACACAGCTTGGGACACAGTCTCACACAGCCTCTTCTAATGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR GCA 90 bp | CTCCTCTGGGATGTGGCGGGAGCGTCCTTAGGGGACTCTTGCATTTaGAAAACAGTGTGCTCTCTTCCTAGCAAGGCCATTCGGTTGTCT | + |
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Preference number: 1 (lower is better) Translates to: LLWDVAGASLGDSCI*KTVCSLPSKAIRLS Trigger: AGACAACCGAATGGCCTTGCTAGGAAGAGAGCACACTGTTTTGCAAATGCAAGAGTCCCCTAAGGACGCTCCCGCCACATCCCAGAGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR TCA 90 bp | GCTGTTATTACAAATGGCCCCGAGAGCCCATTAGAAGAGGCTGTGTaGGACTGTGTCCCAAGCTGTGTCCCTGGAGTGCCCATTATGTGG | + |
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Preference number: 1 (lower is better) Translates to: AVITNGPESPLEEAV*DCVPSCVPGVPIMW Trigger: CCACATAATGGGCACTCCAGGGACACAGCTTGGGACACAGTCTCACACAGCCTCTTCTAATGGGCTCTCGGGGCCATTTGTAATAACAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR GCA 90 bp | CTGGGGGAGGGTCAGGAGGAAATCAACTCTGTCTATCCAGGGAACTaGAGCTGTTATTACAAATGGCCCCGAGAGCCCATTAGAAGAGGC | + |
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Preference number: 1 (lower is better) Translates to: LGEGQEEINSVYPGN*SCYYKWPREPIRRG Trigger: GCCTCTTCTAATGGGCTCTCGGGGCCATTTGTAATAACAGCTGCAGTTCCCTGGATAGACAGAGTTGATTTCCTCCTGACCCTCCCCCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 90 bp | TTTTCTACTAGGGTTCCTTCCCTTACAAAGGCCAGCTGGCACAGCTaGGGGAGGGTCAGGAGGAAATCAACTCTGTCTATCCAGGGAACT | + |
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Preference number: 1 (lower is better) Translates to: FSTRVPSLTKASWHS*GRVRRKSTLSIQGT Trigger: AGTTCCCTGGATAGACAGAGTTGATTTCCTCCTGACCCTCCCCCAGCTGTGCCAGCTGGCCTTTGTAAGGGAAGGAACCCTAGTAGAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 90 bp | AGGGTCACATTTTCTACTAGGGTTCCTTCCCTTACAAAGGCCAGCTaGCACAGCTGGGGGAGGGTCAGGAGGAAATCAACTCTGTCTATC | + |
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Preference number: 1 (lower is better) Translates to: RVTFSTRVPSLTKAS*HSWGRVRRKSTLSI Trigger: GATAGACAGAGTTGATTTCCTCCTGACCCTCCCCCAGCTGTGCCAGCTGGCCTTTGTAAGGGAAGGAACCCTAGTAGAAAATGTGACCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 90 bp | TTCCATTACCCAACACAGCTCACTGCTGTCTCCACCTTACACTCATaGGGTGCAGCTTTCCCTCAACACTCTGCTAACAGCAACCCTTTG | + |
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Preference number: 1 (lower is better) Translates to: FHYPTQLTAVSTLHS*GAAFPQHSANSNPL Trigger: CAAAGGGTTGCTGTTAGCAGAGTGTTGAGGGAAAGCTGCACCCCATGAGTGTAAGGTGGAGACAGCAGTGAGCTGTGTTGGGTAATGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 90 bp | GAAATCAACTCTGTCTATCCAGGGAACTGCAGCTGTTATTACAAATaGCCCCGAGAGCCCATTAGAAGAGGCTGTGTGAGACTGTGTCCC | + |
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Preference number: 1 (lower is better) Translates to: EINSVYPGNCSCYYK*PREPIRRGCVRLCP Trigger: GGGACACAGTCTCACACAGCCTCTTCTAATGGGCTCTCGGGGCCATTTGTAATAACAGCTGCAGTTCCCTGGATAGACAGAGTTGATTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 90 bp | GCACTTCACAGTCACAATAGCAGAAAAACCTGCAGCTTTCCCATTTaGAGGGTCACATTTTCTACTAGGGTTCCTTCCCTTACAAAGGCC | + |
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Preference number: 1 (lower is better) Translates to: ALHSHNSRKTCSFPI*RVTFSTRVPSLTKA Trigger: GGCCTTTGTAAGGGAAGGAACCCTAGTAGAAAATGTGACCCTCCAAATGGGAAAGCTGCAGGTTTTTCTGCTATTGTGACTGTGAAGTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR GCA 90 bp | GAACAGTGTTTCCAAGCACTTCACAGTCACAATAGCAGAAAAACCTaGAGCTTTCCCATTTGGAGGGTCACATTTTCTACTAGGGTTCCT | + |
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Preference number: 1 (lower is better) Translates to: EQCFQALHSHNSRKT*SFPIWRVTFSTRVP Trigger: AGGAACCCTAGTAGAAAATGTGACCCTCCAAATGGGAAAGCTGCAGGTTTTTCTGCTATTGTGACTGTGAAGTGCTTGGAAACACTGTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR-3UTR CCA 90 bp | AGCTGTGTCCCTGGAGTGCCCATTATGTGGAATCTCCCCAATCCCCTACCCTGGCACGTGGTCCCCGCTTaGCCAGGAGAGTCTGCGTGG | + |
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Preference number: 2 (lower is better) Translates to: SCVPGVPIMWNLPNPLPWHVVPA*PGESAW Trigger: CCACGCAGACTCTCCTGGCCAAGCGGGGACCACGTG...CCAGGGTAGGGGATTGGGGAGATTCCACATAATGGGCACTCCAGGGACACAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR-3UTR CCA 90 bp | AGGGGGAAAGGTGGTACTCGGTCACTGTCTCAAGGCAGTTTGTCTGCAAGCCAGCATCCCCACCTCCTCTaGGATGTGGCGGGAGCGTCC | + |
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Preference number: 2 (lower is better) Translates to: RGKGGTRSLSQGSLSASQHPHLL*DVAGAS Trigger: GGACGCTCCCGCCACATCCCAGAGGAGGTGGGGATG...CTGGCTTGCAGACAAACTGCCTTGAGACAGTGACCGAGTACCACCTTTCCCCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR-3UTR CCA 90 bp | ACAGTGTGCTCTCTTCCTAGCAAGGCCATTCGGTTGTCTCCGTGTTGGAGTCCCGGCTGGGTGAAGCCCTaGGTAAATCCCTTGGTCCCC | + |
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Preference number: 2 (lower is better) Translates to: TVCSLPSKAIRLSPCWSPGWVKP*VNPLVP Trigger: GGGGACCAAGGGATTTACCCAGGGCTTCACCCAGCC...GGGACTCCAACACGGAGACAACCGAATGGCCTTGCTAGGAAGAGAGCACACTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR-3UTR GCA 90 bp | AGCTGTGTCCCTGGAGTGCCCATTATGTGGAATCTCCCCAATCCCCTACCCTGGTTGGCCAGGAGAGTCTaGGTGGAATTGCAGCGACCA | + |
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Preference number: 2 (lower is better) Translates to: SCVPGVPIMWNLPNPLPWLARRV*VELQRP Trigger: TGGTCGCTGCAATTCCACGCAGACTCTCCTGGCCAA...CCAGGGTAGGGGATTGGGGAGATTCCACATAATGGGCACTCCAGGGACACAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR-3UTR GCA 90 bp | CCAAGCTGTGTCCCTGGAGTGCCCATTATGTGGAATCTCCCCAATCCCCTACCCTCATCAGCGCCACCCTaGTTGAGTAGGGCAGCAGAA | + |
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Preference number: 2 (lower is better) Translates to: PSCVPGVPIMWNLPNPLPSSAPP*LSRAAE Trigger: TTCTGCTGCCCTACTCAAGCAGGGTGGCGCTGATGA...GGGTAGGGGATTGGGGAGATTCCACATAATGGGCACTCCAGGGACACAGCTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR-3UTR GCA 90 bp | TCCTTTAAAAACACACTTTACGAAGGCAGGAGGGGGTCACTCCTTGCTTCGCCAGCCCTGCTGACAGCCTaGGGTGCGCTCTGTAGATTC | + |
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Preference number: 2 (lower is better) Translates to: SFKNTLYEGRRGSLLASPALLTA*GALCRF Trigger: GAATCTACAGAGCGCACCGCAGGCTGTCAGCAGGGC...TGGCGAAGCAAGGAGTGACCCCCTCCTGCCTTCGTAAAGTGTGTTTTTAAAGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR-3UTR GCA 90 bp | GAAAGGTGGTACTCGGTCACTGTCTCAAGGCAGTTTGTCTGCAAGCCAGGTGGAGAGGGGGTCACTCCTTaGTTCGCCATACCCTTCCAT | + |
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Preference number: 2 (lower is better) Translates to: ERWYSVTVSRQFVCKPGGEGVTP*FAIPFH Trigger: ATGGAAGGGTATGGCGAAGCAAGGAGTGACCCCCTC...TCCACCTGGCTTGCAGACAAACTGCCTTGAGACAGTGACCGAGTACCACCTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR-3UTR CCA 90 bp | GTGTTGGAGTCCCACTACACGGTGCACACCCAGGAAACAGTGACCTTGAACCCCAACAAACCTAAGTCCTaGGTTTCAAACAGTTCGGGG | + |
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Preference number: 2 (lower is better) Translates to: VLESHYTVHTQETVTLNPNKPKS*VSNSSG Trigger: CCCCGAACTGTTTGAAACCCAGGACTTAGGTTTGTT...GGGGTTCAAGGTCACTGTTTCCTGGGTGTGCACCGTGTAGTGGGACTCCAACAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CAA 90 bp | GTGTTGGAGTCCCACTACACGGTGCACACCCAGGAAACAGTGACCTaGAACCCCCAAAGGGATGGGTCTCCTTTAAAAACACACTTTACG | + |
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Preference number: 2 (lower is better) Translates to: VLESHYTVHTQETVT*NPQRDGSPLKTHFT Trigger: CGTAAAGTGTGTTTTTAAAGGAGACCCATCCCTTTGGGGGTTCAAGGTCACTGTTTCCTGGGTGTGCACCGTGTAGTGGGACTCCAACAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR-3UTR GCA 90 bp | GCTTCGCCATACCCTTCCATTACCCAACACAGCTCACTGCTGTCTCCACCTTACACCCATGAAAATATCTaGGATATTTCGGCTGTCTTC | + |
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Preference number: 2 (lower is better) Translates to: ASPYPSITQHSSLLSPPYTHENI*DISAVF Trigger: GAAGACAGCCGAAATATCGCAGATATTTTCATGGGT...GTAAGGTGGAGACAGCAGTGAGCTGTGTTGGGTAATGGAAGGGTATGGCGAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 72 bp | CTCGAGTCCACCACCAGCTCCGGCTGGGTGAAGCCCTaGGTAAATCCCTTGGTCCCCGGCTACAGGCTGGTG | + |
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Preference number: 3 (lower is better) Translates to: LESTTSSGWVKP*VNPLVPGYRLV Trigger: CACCAGCCTGTAGCCGGGGACCAAGGGATTTACCCAGGGCTTCACCCAGCCGGAGCTGGTGGTGGACTCGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 72 bp | CCTGAGAGCATGCACCGTGGCCACGTGGTCCCCGCTTaGCCAGGAGAGTCTGCGTGGAATTGCAGCGACCAG | + |
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Preference number: 3 (lower is better) Translates to: PESMHRGHVVPA*PGESAWNCSDQ Trigger: CTGGTCGCTGCAATTCCACGCAGACTCTCCTGGCCAAGCGGGGACCACGTGGCCACGGTGCATGCTCTCAGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 72 bp | GCTGAGCCGATCCTGAGAGCATGCACCGTGGCCACGTaGTCCCCGCTTGGCCAGGAGAGTCTGCGTGGAATT | + |
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Preference number: 3 (lower is better) Translates to: AEPILRACTVAT*SPLGQESLRGI Trigger: AATTCCACGCAGACTCTCCTGGCCAAGCGGGGACCACGTGGCCACGGTGCATGCTCTCAGGATCGGCTCAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 72 bp | GGAAGCACACTCAGCACTCGCCATCCCCACCTCCTCTaGGATGTGGCGGGAGCGTCCTTAGGGGACTCTTGC | + |
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Preference number: 3 (lower is better) Translates to: GSTLSTRHPHLL*DVAGASLGDSC Trigger: GCAAGAGTCCCCTAAGGACGCTCCCGCCACATCCCAGAGGAGGTGGGGATGGCGAGTGCTGAGTGTGCTTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR TCA 72 bp | ACAAATGGCCCCGAGAGCCCATTAGAAGAGGCTGTGTaGGACTGTGTCCCAAGCTGTGTCCCTGGAGTGCCC | + |
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Preference number: 3 (lower is better) Translates to: TNGPESPLEEAV*DCVPSCVPGVP Trigger: GGGCACTCCAGGGACACAGCTTGGGACACAGTCTCACACAGCCTCTTCTAATGGGCTCTCGGGGCCATTTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 72 bp | AGAGGCTGTGTGAGACTGTGTCCCAAGCTGTGTCCCTaGAGTGCCCATTATGTGGAATCTCCCCAATCCCCT | + |
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Preference number: 3 (lower is better) Translates to: RGCVRLCPKLCP*SAHYVESPQSP Trigger: AGGGGATTGGGGAGATTCCACATAATGGGCACTCCAGGGACACAGCTTGGGACACAGTCTCACACAGCCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 72 bp | AGGGTTCCTTCCCTTACAAAGGCCAGCTGGCACAGCTaGGGGAGGGTCAGGAGGAAATCAACTCTGTCTATC | + |
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Preference number: 3 (lower is better) Translates to: RVPSLTKASWHS*GRVRRKSTLSI Trigger: GATAGACAGAGTTGATTTCCTCCTGACCCTCCCCCAGCTGTGCCAGCTGGCCTTTGTAAGGGAAGGAACCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 72 bp | CCAACACAGCTCACTGCTGTCTCCACCTTACACTCATaGGGTGCAGCTTTCCCTCAACACTCTGCTAACAGC | + |
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Preference number: 3 (lower is better) Translates to: PTQLTAVSTLHS*GAAFPQHSANS Trigger: GCTGTTAGCAGAGTGTTGAGGGAAAGCTGCACCCCATGAGTGTAAGGTGGAGACAGCAGTGAGCTGTGTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR-3UTR CAA 90 bp | AGCTGTGTCCCTGGAGTGCCCATTATGTGGAATCTCCCCAATCCCCTACCCTGGAGGGGACTCTTGCATTaGCAAAACAGTGTGCTCTCT | + |
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Preference number: 3 (lower is better) Translates to: SCVPGVPIMWNLPNPLPWRGLLH*QNSVLS Trigger: AGAGAGCACACTGTTTTGCAAATGCAAGAGTCCCCT...CCAGGGTAGGGGATTGGGGAGATTCCACATAATGGGCACTCCAGGGACACAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR GCA 72 bp | AAACACACTTTACGAAGGCAGGAGGGGGTCACTCCTTaGTTCGCCATACCCTTCCATTACCCAACACAGCTC | + |
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Preference number: 3 (lower is better) Translates to: KHTLRRQEGVTP*FAIPFHYPTQL Trigger: GAGCTGTGTTGGGTAATGGAAGGGTATGGCGAAGCAAGGAGTGACCCCCTCCTGCCTTCGTAAAGTGTGTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR GCA 72 bp | GATGTGGCGGGAGCGTCCTTAGGGGACTCTTGCATTTaGAAAACAGTGTGCTCTCTTCCTAGCAAGGCCATT | + |
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Preference number: 3 (lower is better) Translates to: DVAGASLGDSCI*KTVCSLPSKAI Trigger: AATGGCCTTGCTAGGAAGAGAGCACACTGTTTTGCAAATGCAAGAGTCCCCTAAGGACGCTCCCGCCACATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 72 bp | TTTTCTACTAGGGTTCCTTCCCTTACAAAGGCCAGCTaGCACAGCTGGGGGAGGGTCAGGAGGAAATCAACT | + |
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Preference number: 3 (lower is better) Translates to: FSTRVPSLTKAS*HSWGRVRRKST Trigger: AGTTGATTTCCTCCTGACCCTCCCCCAGCTGTGCCAGCTGGCCTTTGTAAGGGAAGGAACCCTAGTAGAAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR-3UTR CAA 90 bp | ATTAGAAGAGGCTGTGTGAGACTGTGTCCCAAGCTGTGTCCCTGGAGTGCCCATGTCCTTAGGGGACTCTaGCATTTGCAAAACAGTGTG | + |
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Preference number: 3 (lower is better) Translates to: IRRGCVRLCPKLCPWSAHVLRGL*HLQNSV Trigger: CACACTGTTTTGCAAATGCAAGAGTCCCCTAAGGAC...ATGGGCACTCCAGGGACACAGCTTGGGACACAGTCTCACACAGCCTCTTCTAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR GCA 72 bp | GGTCAGGAGGAAATCAACTCTGTCTATCCAGGGAACTaGAGCTGTTATTACAAATGGCCCCGAGAGCCCATT | + |
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Preference number: 3 (lower is better) Translates to: GQEEINSVYPGN*SCYYKWPREPI Trigger: AATGGGCTCTCGGGGCCATTTGTAATAACAGCTGCAGTTCCCTGGATAGACAGAGTTGATTTCCTCCTGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CCA 72 bp | CACCCAGGAAACAGTGACCTTGAACCCCCAAAGGGATaGGTCTCCTTTAAAAACACACTTTACGAAGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: HPGNSDLEPPKG*VSFKNTLYEGR Trigger: CCTGCCTTCGTAAAGTGTGTTTTTAAAGGAGACCCATCCCTTTGGGGGTTCAAGGTCACTGTTTCCTGGGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR-3UTR CAA 90 bp | GGAAATCAACTCTGTCTATCCAGGGAACTGCAGCTGTTATTACAAATGGCCCCGGCTAACAGCAACCCTTaGAAAGAAAAAGGGAACGGA | + |
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Preference number: 3 (lower is better) Translates to: GNQLCLSRELQLLLQMAPANSNP*KEKGNG Trigger: TCCGTTCCCTTTTTCTTTCAAAGGGTTGCTGTTAGC...CGGGGCCATTTGTAATAACAGCTGCAGTTCCCTGGATAGACAGAGTTGATTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR GCA 72 bp | TTCCAAGCACTTCACAGTCACAATAGCAGAAAAACCTaGAGCTTTCCCATTTGGAGGGTCACATTTTCTACT | + |
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Preference number: 3 (lower is better) Translates to: FQALHSHNSRKT*SFPIWRVTFST Trigger: AGTAGAAAATGTGACCCTCCAAATGGGAAAGCTGCAGGTTTTTCTGCTATTGTGACTGTGAAGTGCTTGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS-3UTR GCA 90 bp | TGGCCACGTGGTCCCCGCTTGGCCAGGAGAGTCTGCGTGGAATTGCAGCGACCAGAGGCCGGGCGATCGTaGGCTGCGTCCAGCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: WPRGPRLARRVCVELQRPEAGRS*AASSCS Trigger: GCTGCAGCTGGACGCAGCGCACGATCGCCCGGCCTC...TGGTCGCTGCAATTCCACGCAGACTCTCCTGGCCAAGCGGGGACCACGTGGCCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CAA 72 bp | ACCAGCTCCGGCTGGGTGAAGCCCTGGGTAAATCCCTaGGTCCCCGGCTACAGGCTGGTGCTGTGGCCACTT | + |
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Preference number: 4 (lower is better) Translates to: TSSGWVKPWVNP*VPGYRLVLWPL Trigger: AAGTGGCCACAGCACCAGCCTGTAGCCGGGGACCAAGGGATTTACCCAGGGCTTCACCCAGCCGGAGCTGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CAA 72 bp | CTACCCTGGCCCCTAGCATCATCAGCGCCACCCTGCTaGAGTAGGGCAGCAGAACCAAGGGGGAAAGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: LPWPLASSAPPC*SRAAEPRGKGG Trigger: ACCACCTTTCCCCCTTGGTTCTGCTGCCCTACTCAAGCAGGGTGGCGCTGATGATGCTAGGGGCCAGGGTAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS-3UTR TCA 90 bp | TGGCCAGGAGAGTCTGCGTGGAATTGCAGCGACCAGGTTGAATCACGCCAAAAAGTGCGGGTCTCCGGCTaGGATCCGCGTCGCTGTTGC | + |
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Preference number: 4 (lower is better) Translates to: WPGESAWNCSDQVESRQKVRVSG*DPRRCC Trigger: GCAACAGCGACGCGGATCTCAGCCGGAGACCCGCAC...TTTTTGGCGTGATTCAACCTGGTCGCTGCAATTCCACGCAGACTCTCCTGGCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS-3UTR TCA 90 bp | GTCCCAAGCTGTGTCCCTGGAGTGCCCATTATGTGGAATCTCCCCAATCCCCTACTCATGCACTGGGGCTaGCAGAGGCCCGAGGAACGG | + |
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Preference number: 4 (lower is better) Translates to: VPSCVPGVPIMWNLPNPLLMHWG*QRPEER Trigger: CCGTTCCTCGGGCCTCTGTCAGCCCCAGTGCATGAG...TAGGGGATTGGGGAGATTCCACATAATGGGCACTCCAGGGACACAGCTTGGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS-3UTR GCA 90 bp | GAAAGGTGGTACTCGGTCACTGTCTCAAGGCAGTTTGTCTGCAAGCCAGGTGGACGGGCGATCGTGCGCTaGGTCCAGCTGCAGCGTCTC | + |
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Preference number: 4 (lower is better) Translates to: ERWYSVTVSRQFVCKPGGRAIVR*VQLQRL Trigger: GAGACGCTGCAGCTGGACGCAGCGCACGATCGCCCG...TCCACCTGGCTTGCAGACAAACTGCCTTGAGACAGTGACCGAGTACCACCTTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS-3UTR GCA 90 bp | ACCAAGGGGGAAAGGTGGTACTCGGTCACTGTCTCAAGGCAGTTTGTCTGCAAGGATCCGCGTCGCTGTTaGAAGCGGCGGGACGCGGCT | + |
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Preference number: 4 (lower is better) Translates to: TKGERWYSVTVSRQFVCKDPRRC*KRRDAA Trigger: AGCCGCGTCCCGCCGCTTGCAACAGCGACGCGGATC...CTTGCAGACAAACTGCCTTGAGACAGTGACCGAGTACCACCTTTCCCCCTTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS-3UTR GCA 90 bp | CCCATTTGGAGGGTCACATTTTCTACTAGGGTTCCTTCCCTTACAAAGGCCAGCAAGCGCCAGGGTCGCTaGAGGCCGCGCGAGGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: PIWRVTFSTRVPSLTKASKRQGR*RPREGS Trigger: GGAGCCCTCGCGCGGCCTGCAGCGACCCTGGCGCTT...GCTGGCCTTTGTAAGGGAAGGAACCCTAGTAGAAAATGTGACCCTCCAAATGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS-3UTR CCA 90 bp | ACAGTGTGCTCTCTTCCTAGCAAGGCCATTCGGTTGTCTCCGTGTTGGAGTCCCCAGCAGCCTCCTAGCTaGGGTCCCGGTCTTGTCCGC | + |
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Preference number: 4 (lower is better) Translates to: TVCSLPSKAIRLSPCWSPQQPPS*GPGLVR Trigger: GCGGACAAGACCGGGACCCCAGCTAGGAGGCTGCTG...GGGACTCCAACACGGAGACAACCGAATGGCCTTGCTAGGAAGAGAGCACACTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS-3UTR TCA 90 bp | CCCATTTGGAGGGTCACATTTTCTACTAGGGTTCCTTCCCTTACAAAGGCCAGCGCTGCGCCCTCCCCATaGAAGCGCCAGGGTCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: PIWRVTFSTRVPSLTKASAAPSP*KRQGRC Trigger: GCAGCGACCCTGGCGCTTTCATGGGGAGGGCGCAGC...GCTGGCCTTTGTAAGGGAAGGAACCCTAGTAGAAAATGTGACCCTCCAAATGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS-3UTR GCA 90 bp | AACGAAATGGTCGCTCAGAGTGAACAGTGTTTCCAAGCACTTCACAGTCACAATGGCGAAGGCGGCTCATaGACTGGGGCTGACAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: NEMVAQSEQCFQALHSHNGEGGS*TGADRG Trigger: GCCTCTGTCAGCCCCAGTGCATGAGCCGCCTTCGCC...ATTGTGACTGTGAAGTGCTTGGAAACACTGTTCACTCTGAGCGACCATTTCGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CAA 72 bp | AAAACAGTGTGCTCTCTTCCTAGCAAGGCCATTCGGTaGTCTCCGTGTTGGAGTCCCACTACACGGTGCACA | + |
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Preference number: 4 (lower is better) Translates to: KTVCSLPSKAIR*SPCWSPTTRCT Trigger: TGTGCACCGTGTAGTGGGACTCCAACACGGAGACAACCGAATGGCCTTGCTAGGAAGAGAGCACACTGTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CAA 72 bp | AAAACACACTTTACGAAGGCAGGAGGGGGTCACTCCTaGCTTCGCCATACCCTTCCATTACCCAACACAGCT | + |
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Preference number: 4 (lower is better) Translates to: KTHFTKAGGGHS*LRHTLPLPNTA Trigger: AGCTGTGTTGGGTAATGGAAGGGTATGGCGAAGCAAGGAGTGACCCCCTCCTGCCTTCGTAAAGTGTGTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CAA 72 bp | TCCCACTACACGGTGCACACCCAGGAAACAGTGACCTaGAACCCCCAAAGGGATGGGTCTCCTTTAAAAACA | + |
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Preference number: 4 (lower is better) Translates to: SHYTVHTQETVT*NPQRDGSPLKT Trigger: TGTTTTTAAAGGAGACCCATCCCTTTGGGGGTTCAAGGTCACTGTTTCCTGGGTGTGCACCGTGTAGTGGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| 3UTR CAA 72 bp | CGGTTACTTCTATTCAGCCCCAAGAGGGTCCTCTCGTaGTACCGCATGTTTTACATTGAAACCAGCACCGCA | + |
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Preference number: 4 (lower is better) Translates to: RLLLFSPKRVLS*YRMFYIETSTA Trigger: TGCGGTGCTGGTTTCAATGTAAAACATGCGGTACAACGAGAGGACCCTCTTGGGGCTGAATAGAAGTAACCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS GCA 90 bp | GGGTCGCTGCAGGCCGCGCGAGGGCTCCCGGGCGAAGGCGGCTCATaGACTGGGGCTGACAGAGGCCCGAGGAACGGGTGTGCGGGAAGC | + |
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Preference number: 5 (lower is better) Translates to: GSLQAARGLPGEGGS*TGADRGPRNGCAGS Trigger: GCTTCCCGCACACCCGTTCCTCGGGCCTCTGTCAGCCCCAGTGCATGAGCCGCCTTCGCCCGGGAGCCCTCGCGCGGCCTGCAGCGACCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS-3UTR CAA 90 bp | ATGGTCGCTCAGAGTGAACAGTGTTTCCAAGCACTTCACAGTCACAATAGCAGAAGATCCGCGTCGCTGTaGCAAGCGGCGGGACGCGGC | + |
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Preference number: 5 (lower is better) Translates to: MVAQSEQCFQALHSHNSRRSASL*QAAGRG Trigger: GCCGCGTCCCGCCGCTTGCAACAGCGACGCGGATCT...TCTGCTATTGTGACTGTGAAGTGCTTGGAAACACTGTTCACTCTGAGCGACCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS GCA 72 bp | CAGGCCGCGCGAGGGCTCCCGGGCGAAGGCGGCTCATaGACTGGGGCTGACAGAGGCCCGAGGAACGGGTGT | + |
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Preference number: 6 (lower is better) Translates to: QAARGLPGEGGS*TGADRGPRNGC Trigger: ACACCCGTTCCTCGGGCCTCTGTCAGCCCCAGTGCATGAGCCGCCTTCGCCCGGGAGCCCTCGCGCGGCCTG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS GCA 72 bp | CTGCCAGGGACAAGAAGGTCGTCCCCAGTTCTGAGCTaGGCCCTCCCCATGAAAGCGCCAGGGTCGCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: LPGTRRSSPVLS*ALPMKAPGSLQ Trigger: CTGCAGCGACCCTGGCGCTTTCATGGGGAGGGCGCAGCTCAGAACTGGGGACGACCTTCTTGTCCCTGGCAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS CAA 90 bp | GCACTGGGGCTGACAGAGGCCCGAGGAACGGGTGTGCGGGAAGCTTaGCGTGTAACTGTAGCTGTCGCGAATGAAGTCTGCGCACCGCCT | + |
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Preference number: 6 (lower is better) Translates to: ALGLTEARGTGVREA*RVTVAVANEVCAPP Trigger: AGGCGGTGCGCAGACTTCATTCGCGACAGCTACAGTTACACGCAAAGCTTCCCGCACACCCGTTCCTCGGGCCTCTGTCAGCCCCAGTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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| CDS CAA 72 bp | CTGACAGAGGCCCGAGGAACGGGTGTGCGGGAAGCTTaGCGTGTAACTGTAGCTGTCGCGAATGAAGTCTGC | + |
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Preference number: 6 (lower is better) Translates to: LTEARGTGVREA*RVTVAVANEVC Trigger: GCAGACTTCATTCGCGACAGCTACAGTTACACGCAAAGCTTCCCGCACACCCGTTCCTCGGGCCTCTGTCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087155.5 |
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