RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FLRT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047787

Ensembl transcript IDs: ENSMUST00000113383.4

Found 279 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGAAGGTCACTGTGGAGTTTCTCTTCCTGGCTCCTGGTGTTGCAGTaGGCTAGACAGAGCCACGTGACACACCGGTGCGGTGCGGCGCGG +
Preference number: 1 (lower is better)
Translates to: GRSLWSFSSWLLVLQ*ARQSHVTHRCGAAR
Trigger: CCGCGCCGCACCGCACCGGTGTGTCACGTGGCTCTGTCTAGCCCACTGCAACACCAGGAGCCAGGAAGAGAAACTCCACAGTGACCTTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 90 bp TGCAAGGTAGGGGTGAGGACGTGGAGTTTGATTTCCCTGCGGCCCTaGGGAAGCTGGCACGGTGCCCTCGATGCCTTGTTCAGCATCTGG +
Preference number: 1 (lower is better)
Translates to: CKVGVRTWSLISLRP*GSWHGALDALFSIW
Trigger: CCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAGGGAAATCAAACTCCACGTCCTCACCCCTACCTTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 90 bp GACGTGGAGTTTGATTTCCCTGCGGCCCTGGGGAAGCTGGCACGGTaGCCTCGATGCCTTGTTCAGCATCTGGGACTCTCCCTCACATAC +
Preference number: 1 (lower is better)
Translates to: DVEFDFPAALGKLAR*PRCLVQHLGLSLTY
Trigger: GTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAGGGAAATCAAACTCCACGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 90 bp GTGGGCAGACAGACGCACCTCCACGCGGCAGAGAGAGCTCCAGTTTaGTTTCCTCAGAGCTTTCTGCAGAGTCCGGTGGATGGAACCGAA +
Preference number: 1 (lower is better)
Translates to: VGRQTHLHAAERAPV*FPQSFLQSPVDGTE
Trigger: TTCGGTTCCATCCACCGGACTCTGCAGAAAGCTCTGAGGAAAGCAAACTGGAGCTCTCTCTGCCGCGTGGAGGTGCGTCTGTCTGCCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 90 bp TGGAAATGTCAGCTGCACACGGACAGCATCCCATTGGCCGTCCAGTaGCAACCCTGGCCTCCCTCACTTCTGAGGGTAGAAAGGCTGGGT +
Preference number: 1 (lower is better)
Translates to: WKCQLHTDSIPLAVQ*QPWPPSLLRVERLG
Trigger: ACCCAGCCTTTCTACCCTCAGAAGTGAGGGAGGCCAGGGTTGGCACTGGACGGCCAATGGGATGCTGTCCGTGTGCAGCTGACATTTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 90 bp CCCTGGGGAAGCTGGCACGGTGCCCTCGATGCCTTGTTCAGCATCTaGGACTCTCCCTCACATACCTGTTCCTTACAGATGGGTCTCCTC +
Preference number: 1 (lower is better)
Translates to: PWGSWHGALDALFSI*DSPSHTCSLQMGLL
Trigger: GAGGAGACCCATCTGTAAGGAACAGGTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 90 bp TTTGATTTCCCTGCGGCCCTGGGGAAGCTGGCACGGTGCCCTCGATaGCTTGTTCAGCATCTGGGACTCTCCCTCACATACCTGTTCCTT +
Preference number: 1 (lower is better)
Translates to: FDFPAALGKLARCPR*LVQHLGLSLTYLFL
Trigger: AAGGAACAGGTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAGGGAAATCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 90 bp GTGCCAACCCTGGCCTCCCTCACTTCTGAGGGTAGAAAGGCTGGGTaGCCTGAGCCTCTTCTATTGTATTGTGAGGCCAGAAGCCAGGTT +
Preference number: 1 (lower is better)
Translates to: VPTLASLTSEGRKAG*PEPLLLYCEARSQV
Trigger: AACCTGGCTTCTGGCCTCACAATACAATAGAAGAGGCTCAGGGCACCCAGCCTTTCTACCCTCAGAAGTGAGGGAGGCCAGGGTTGGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 90 bp GTCACACTTGGGGGCTTTCTGAAAGGATGCCTCCAAGTGCAGTTCTaGGGATGCAGCACAGTGGTGGGGTGTTTGCCTTGCATGGCTAGG +
Preference number: 1 (lower is better)
Translates to: VTLGGFLKGCLQVQF*GCSTVVGCLPCMAR
Trigger: CCTAGCCATGCAAGGCAAACACCCCACCACTGTGCTGCATCCCCAGAACTGCACTTGGAGGCATCCTTTCAGAAAGCCCCCAAGTGTGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 90 bp GTTAGAAACTGTGAGGGTCAGGCTGGCCAGCCACAGACTTCCCTATaGAAATGTCAGCTGCACACGGACAGCATCCCATTGGCCGTCCAG +
Preference number: 1 (lower is better)
Translates to: VRNCEGQAGQPQTSL*KCQLHTDSIPLAVQ
Trigger: CTGGACGGCCAATGGGATGCTGTCCGTGTGCAGCTGACATTTCCATAGGGAAGTCTGTGGCTGGCCAGCCTGACCCTCACAGTTTCTAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 90 bp GCACTGGTCATCAAGGAAAGCTTTTCTTGGTACCAGAAAGGGGAGTaGCCCGGCTCTGGGCTGGCTGACACAGGATCTCTTTCCTACCAC +
Preference number: 1 (lower is better)
Translates to: ALVIKESFSWYQKGE*PGSGLADTGSLSYH
Trigger: GTGGTAGGAAAGAGATCCTGTGTCAGCCAGCCCAGAGCCGGGCCACTCCCCTTTCTGGTACCAAGAAAAGCTTTCCTTGATGACCAGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 90 bp TGCCACAAAATACACTCCCCAGAGCTGAGGCCATGGAGGTTGTTCTaGCTGGTTAGAAACTGTGAGGGTCAGGCTGGCCAGCCACAGACT +
Preference number: 1 (lower is better)
Translates to: CHKIHSPELRPWRLF*LVRNCEGQAGQPQT
Trigger: AGTCTGTGGCTGGCCAGCCTGACCCTCACAGTTTCTAACCAGCCAGAACAACCTCCATGGCCTCAGCTCTGGGGAGTGTATTTTGTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR TCA 90 bp TTCTCCTTTGGAGAACTGGGACAAAGGTCACACTTGGGGGCTTTCTaGAAGGATGCCTCCAAGTGCAGTTCTGGGGATGCAGCACAGTGG +
Preference number: 1 (lower is better)
Translates to: FSFGELGQRSHLGAF*KDASKCSSGDAAQW
Trigger: CCACTGTGCTGCATCCCCAGAACTGCACTTGGAGGCATCCTTTCAGAAAGCCCCCAAGTGTGACCTTTGTCCCAGTTCTCCAAAGGAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 90 bp TGGCTCTTTAATGTCCAGCAAGCAGATGCCCCACCAGGTACACTTTaGGCAGCTGCCTGGCTTTTCTTCCTGCCTTTGCTTTGGATGGAG +
Preference number: 1 (lower is better)
Translates to: WLFNVQQADAPPGTL*AAAWLFFLPLLWME
Trigger: CTCCATCCAAAGCAAAGGCAGGAAGAAAAGCCAGGCAGCTGCCCAAAGTGTACCTGGTGGGGCATCTGCTTGCTGGACATTAAAGAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 90 bp TGTTCAGCATCTGGGACTCTCCCTCACATACCTGTTCCTTACAGATaGGTCTCCTCTGAGCCTGCCAGGACTAGGGCATCATTAGGGTCA +
Preference number: 1 (lower is better)
Translates to: CSASGTLPHIPVPYR*VSSEPARTRASLGS
Trigger: TGACCCTAATGATGCCCTAGTCCTGGCAGGCTCAGAGGAGACCCATCTGTAAGGAACAGGTATGTGAGGGAGAGTCCCAGATGCTGAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR TCA 90 bp CTGAGGCACCTGCCGGGTCCATTTCTTTCTATCTCATCTCTTCACTaGCGGGCTAGTTGGCTCTTTAATGTCCAGCAAGCAGATGCCCCA +
Preference number: 1 (lower is better)
Translates to: LRHLPGPFLSISSLH*RASWLFNVQQADAP
Trigger: TGGGGCATCTGCTTGCTGGACATTAAAGAGCCAACTAGCCCGTCAGTGAAGAGATGAGATAGAAAGAAATGGACCCGGCAGGTGCCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR TCA 90 bp ACCCCTTGGGCTAAGATCAGGAGCCTGTGCCTCTTTCCACTACTCTaGGGCACCTGCCGGGTCCATTTCTTTCTATCTCATCTCTTCACT +
Preference number: 1 (lower is better)
Translates to: TPWAKIRSLCLFPLL*GTCRVHFFLSHLFT
Trigger: AGTGAAGAGATGAGATAGAAAGAAATGGACCCGGCAGGTGCCTCAGAGTAGTGGAAAGAGGCACAGGCTCCTGATCTTAGCCCAAGGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR TCA 90 bp CTCCGTGCCGTCACGTGTTTGTTATCGGCTTCTCTCTGCTGGCCCTaGATGGAGCTCGAGGTGAATACAAATGTTGTACAGGTAGCATCA +
Preference number: 1 (lower is better)
Translates to: LRAVTCLLSASLCWP*MELEVNTNVVQVAS
Trigger: TGATGCTACCTGTACAACATTTGTATTCACCTCGAGCTCCATTCAGGGCCAGCAGAGAGAAGCCGATAACAAACACGTGACGGCACGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 90 bp AAACTTTGCTTTCTGTTTGGAAGGTCACTGTGGAGTTTCTCTTCCTaGCTCCTGGTGTTGCAGTGGGCTAGACAGAGCCACGTGACACAC +
Preference number: 1 (lower is better)
Translates to: KLCFLFGRSLWSFSS*LLVLQWARQSHVTH
Trigger: GTGTGTCACGTGGCTCTGTCTAGCCCACTGCAACACCAGGAGCCAGGAAGAGAAACTCCACAGTGACCTTCCAAACAGAAAGCAAAGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 90 bp AGCTCCAGTTTGCTTTCCTCAGAGCTTTCTGCAGAGTCCGGTGGATaGAACCGAAGTGCTCAGCACTGGAAGGAAAAGTTTGACTTATTT +
Preference number: 1 (lower is better)
Translates to: SSSLLSSELSAESGG*NRSAQHWKEKFDLF
Trigger: AAATAAGTCAAACTTTTCCTTCCAGTGCTGAGCACTTCGGTTCCATCCACCGGACTCTGCAGAAAGCTCTGAGGAAAGCAAACTGGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR TCA 90 bp AACATTTCTCTCTTGACCTCATTATGTGGGAAAAATGACTTGGGATaGAGAGGAAGAAAGGTCTCCTCTGGAGTGATCCGTGTCCATACC +
Preference number: 1 (lower is better)
Translates to: NISLLTSLCGKNDLG*RGRKVSSGVIRVHT
Trigger: GGTATGGACACGGATCACTCCAGAGGAGACCTTTCTTCCTCTTCATCCCAAGTCATTTTTCCCACATAATGAGGTCAAGAGAGAAATGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 90 bp CCTTTCCGGATTTGCTGTCATTATTTTATCATGGTTTTAATCTCATaGCTCACCACACTGTGGTGTCAGTTGATAAATGATAACGACATT +
Preference number: 1 (lower is better)
Translates to: PFRICCHYFIMVLIS*LTTLWCQLINDNDI
Trigger: AATGTCGTTATCATTTATCAACTGACACCACAGTGTGGTGAGCCATGAGATTAAAACCATGATAAAATAATGACAGCAAATCCGGAAAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR GCA 90 bp CTGCGGCCCTGGGGAAGCTGGCACGGTGCCCTCGATGCCTTGTTCAGCATCTGGCCTGGCTCCTGGTGTTaGAGTGGGCTAGACAGAGCC +
Preference number: 2 (lower is better)
Translates to: LRPWGSWHGALDALFSIWPGSWC*SGLDRA
Trigger: GGCTCTGTCTAGCCCACTGCAACACCAGGAGCCAGG...CCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp CTGCGGCCCTGGGGAAGCTGGCACGGTGCCCTCGATGCCTTGTTCAGCATCTGGCTGGGGCTGGTGGGTTaGGGGTCTCCATTTGGTGTG +
Preference number: 2 (lower is better)
Translates to: LRPWGSWHGALDALFSIWLGLVG*GSPFGV
Trigger: CACACCAAATGGAGACCCCCAACCCACCAGCCCCAG...CCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp CCAGGGCTCGTTAGGGGGCAATGCCAGCCTTGGGCTGTCCAACTAGGTGTAATCGCCGTTCCCTGGGGCTaGTGGGTTGGGGGTCTCCAT +
Preference number: 2 (lower is better)
Translates to: PGLVRGQCQPWAVQLGVIAVPWG*WVGGLH
Trigger: ATGGAGACCCCCAACCCACCAGCCCCAGGGAACGGC...GATTACACCTAGTTGGACAGCCCAAGGCTGGCATTGCCCCCTAACGAGCCCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR GCA 90 bp GGCCAGCCACAGACTTCCCTATGGAAATGTCAGCTGCACACGGACAGCATCCCAGGCTATTGGAGGGGCTaGAGGGCCATGGCTGGGCAG +
Preference number: 2 (lower is better)
Translates to: GQPQTSLWKCQLHTDSIPGYWRG*RAMAGQ
Trigger: CTGCCCAGCCATGGCCCTGCAGCCCCTCCAATAGCC...TGGGATGCTGTCCGTGTGCAGCTGACATTTCCATAGGGAAGTCTGTGGCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp GTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTCTTCCCTCCTTTCCGGGCCCGGCTCTGGGCTaGCTGACACAGGATCTCTTT +
Preference number: 2 (lower is better)
Translates to: VQDEADIRTPGTALPSFPGPALG*LTQDLF
Trigger: AAAGAGATCCTGTGTCAGCCAGCCCAGAGCCGGGCC...CGGAAAGGAGGGAAGAGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CAA 90 bp CTGTTTGGAAGGTCACTGTGGAGTTTCTCTTCCTGGCTCCTGGTGTaGCAGTGGGCTAGACAGAGCCACGTGACACACCGGTGCGGTGCG +
Preference number: 2 (lower is better)
Translates to: LFGRSLWSFSSWLLV*QWARQSHVTHRCGA
Trigger: CGCACCGCACCGGTGTGTCACGTGGCTCTGTCTAGCCCACTGCAACACCAGGAGCCAGGAAGAGAAACTCCACAGTGACCTTCCAAACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CAA 90 bp ATTTCCCTGCGGCCCTGGGGAAGCTGGCACGGTGCCCTCGATGCCTaGTTCAGCATCTGGGACTCTCCCTCACATACCTGTTCCTTACAG +
Preference number: 2 (lower is better)
Translates to: ISLRPWGSWHGALDA*FSIWDSPSHTCSLQ
Trigger: CTGTAAGGAACAGGTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAGGGAAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CAA 90 bp CAGACTTCCCTATGGAAATGTCAGCTGCACACGGACAGCATCCCATaGGCCGTCCAGTGCCAACCCTGGCCTCCCTCACTTCTGAGGGTA +
Preference number: 2 (lower is better)
Translates to: QTSLWKCQLHTDSIP*AVQCQPWPPSLLRV
Trigger: TACCCTCAGAAGTGAGGGAGGCCAGGGTTGGCACTGGACGGCCAATGGGATGCTGTCCGTGTGCAGCTGACATTTCCATAGGGAAGTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR TCA 90 bp ACTATTGTGGGGACAGCATCTATTGGGGGAGGGACAGATGAGGGCACTGGTCATTCCTACCACCTGGACTaGGGCACCTCCCCTCCACCT +
Preference number: 2 (lower is better)
Translates to: TIVGTASIGGGTDEGTGHSYHLD*GTSPPP
Trigger: AGGTGGAGGGGAGGTGCCTCAGTCCAGGTGGTAGGA...ATGACCAGTGCCCTCATCTGTCCCTCCCCCAATAGATGCTGTCCCCACAATAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR TCA 90 bp TTGACAGATGGTGACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACTGGGGGAGGGACAGATaGGGGCACTGGTCATCAAGG +
Preference number: 2 (lower is better)
Translates to: LTDGDPGSPSTGRSRHQNWGRDR*GHWSSR
Trigger: CCTTGATGACCAGTGCCCTCATCTGTCCCTCCCCCA...GTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGTCACCATCTGTCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp CCAGGGCTCGTTAGGGGGCAATGCCAGCCTTGGGCTGTCCAACTAGGTGTAATCCCTGTTCCTTACAGATaGGTCTCCTCTGAGCCTGCC +
Preference number: 2 (lower is better)
Translates to: PGLVRGQCQPWAVQLGVIPVPYR*VSSEPA
Trigger: GGCAGGCTCAGAGGAGACCCATCTGTAAGGAACAGG...GATTACACCTAGTTGGACAGCCCAAGGCTGGCATTGCCCCCTAACGAGCCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR GCA 90 bp AGGCTGGGTGCCCTGAGCCTCTTCTATTGTATTGTGAGGCCAGAAGCCAGGTTCGTGCAGTTCTGGGGATaGAGCACAGTGGTGGGGTGT +
Preference number: 2 (lower is better)
Translates to: RLGALSLFYCIVRPEARFVQFWG*STVVGC
Trigger: ACACCCCACCACTGTGCTGCATCCCCAGAACTGCAC...GAACCTGGCTTCTGGCCTCACAATACAATAGAAGAGGCTCAGGGCACCCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp GGCCAGCCACAGACTTCCCTATGGAAATGTCAGCTGCACACGGACAGCATCCCACCACCAGACCCTTCCTaGAGCAGGAAACAAGGAAGG +
Preference number: 2 (lower is better)
Translates to: GQPQTSLWKCQLHTDSIPPPDPS*SRKQGR
Trigger: CCTTCCTTGTTTCCTGCTCCAGGAAGGGTCTGGTGG...TGGGATGCTGTCCGTGTGCAGCTGACATTTCCATAGGGAAGTCTGTGGCTGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR TCA 90 bp CCAGGGCTCGTTAGGGGGCAATGCCAGCCTTGGGCTGTCCAACTAGGTGTAATCTGTGTGTGTGTATGCTaGTGTCTCCCAGCGCTTTTC +
Preference number: 2 (lower is better)
Translates to: PGLVRGQCQPWAVQLGVICVCVC*CLPALF
Trigger: GAAAAGCGCTGGGAGACATCAGCATACACACACACA...GATTACACCTAGTTGGACAGCCCAAGGCTGGCATTGCCCCCTAACGAGCCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR TCA 90 bp CTGCGGCCCTGGGGAAGCTGGCACGGTGCCCTCGATGCCTTGTTCAGCATCTGGATTATGTGGGAAAAATaGCTTGGGATGAAGAGGAAG +
Preference number: 2 (lower is better)
Translates to: LRPWGSWHGALDALFSIWIMWEK*LGMKRK
Trigger: CTTCCTCTTCATCCCAAGTCATTTTTCCCACATAAT...CCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR GCA 90 bp GGCCAGCCACAGACTTCCCTATGGAAATGTCAGCTGCACACGGACAGCATCCCATACACTTTGGGCAGCTaGCTGGCTTTTCTTCCTGCC +
Preference number: 2 (lower is better)
Translates to: GQPQTSLWKCQLHTDSIPYTLGS*LAFLPA
Trigger: GGCAGGAAGAAAAGCCAGGCAGCTGCCCAAAGTGTA...TGGGATGCTGTCCGTGTGCAGCTGACATTTCCATAGGGAAGTCTGTGGCTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp CCCAGGTGTTTCAAGCATTTGGCCACCAGACCCTTCCTGGAGCAGGAAACAAGGCCACCAGGTACACTTTaGGCAGCTGCCTGGCTTTTC +
Preference number: 2 (lower is better)
Translates to: PRCFKHLATRPFLEQETRPPGTL*AAAWLF
Trigger: GAAAAGCCAGGCAGCTGCCCAAAGTGTACCTGGTGG...CCTTGTTTCCTGCTCCAGGAAGGGTCTGGTGGCCAAATGCTTGAAACACCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp ATAAAGGGTACTGGGAAAATGATAGGACCAGCAGGGGTGGAATGGCACAGGAAGCGTGTCCATACCCCTTaGCCGTTCCCTGGGGCTGGT +
Preference number: 2 (lower is better)
Translates to: IKGTGKMIGPAGVEWHRKRVHTP*PFPGAG
Trigger: ACCAGCCCCAGGGAACGGCCAAGGGGTATGGACACG...CTTCCTGTGCCATTCCACCCCTGCTGGTCCTATCATTTTCCCAGTACCCTTTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR GCA 90 bp CACTGGGGACCACAGGGCTCCAGGGTGCATGTTTATACAGACCTGAATCTGGGGCTGCCCTCAGAGCAGTaGCTTCCCTTTGATGACTAT +
Preference number: 2 (lower is better)
Translates to: HWGPQGSRVHVYTDLNLGLPSEQ*LPFDDY
Trigger: ATAGTCATCAAAGGGAAGGCACTGCTCTGAGGGCAG...CCCCAGATTCAGGTCTGTATAAACATGCACCCTGGAGCCCTGTGGTCCCCAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR GCA 90 bp AAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGTCACACTTGGGGGCAGTGGTGGGGTGTTTaGCTTGCATGGCTAGGCCCT +
Preference number: 2 (lower is better)
Translates to: KPGSFSPLENWDKGHTWGQWWGV*LAWLGP
Trigger: AGGGCCTAGCCATGCAAGGCAAACACCCCACCACTG...CCCCCAAGTGTGACCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp GGCCAGCCACAGACTTCCCTATGGAAATGTCAGCTGCACACGGACAGCATCCCATTCCTGCCTTTGCTTTaGATGGAGTGGCAGAGGTCT +
Preference number: 2 (lower is better)
Translates to: GQPQTSLWKCQLHTDSIPFLPLL*MEWQRS
Trigger: AGACCTCTGCCACTCCATCCAAAGCAAAGGCAGGAA...TGGGATGCTGTCCGTGTGCAGCTGACATTTCCATAGGGAAGTCTGTGGCTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp ATTGTGAGGCCAGAAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGCACAGGAAGGGCTATTaGAGGGGCTGCAGGGCCATG +
Preference number: 2 (lower is better)
Translates to: IVRPEARFLFSFGELGQRHRKGY*RGCRAM
Trigger: CATGGCCCTGCAGCCCCTCCAATAGCCCTTCCTGTG...CCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTTCTGGCCTCACAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CAA 90 bp CTTAAATGCCACAAAATACACTCCCCAGAGCTGAGGCCATGGAGGTaGTTCTGGCTGGTTAGAAACTGTGAGGGTCAGGCTGGCCAGCCA +
Preference number: 2 (lower is better)
Translates to: LKCHKIHSPELRPWR*FWLVRNCEGQAGQP
Trigger: TGGCTGGCCAGCCTGACCCTCACAGTTTCTAACCAGCCAGAACAACCTCCATGGCCTCAGCTCTGGGGAGTGTATTTTGTGGCATTTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR TCA 90 bp ATAAAGGGTACTGGGAAAATGATAGGACCAGCAGGGGTGGAATGGCACAGGAAGTGCATTGACAGATGGTaGCCCGGGCTCCCCAAGTAC +
Preference number: 2 (lower is better)
Translates to: IKGTGKMIGPAGVEWHRKCIDRW*PGLPKY
Trigger: GTACTTGGGGAGCCCGGGTCACCATCTGTCAATGCA...CTTCCTGTGCCATTCCACCCCTGCTGGTCCTATCATTTTCCCAGTACCCTTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp CACTGGGGACCACAGGGCTCCAGGGTGCATGTTTATACAGACCTGAATCTGGGGTGCCTTTGCTTTGGATaGAGTGGCAGAGGTCTTTTG +
Preference number: 2 (lower is better)
Translates to: HWGPQGSRVHVYTDLNLGCLCFG*SGRGLL
Trigger: CAAAAGACCTCTGCCACTCCATCCAAAGCAAAGGCA...CCCCAGATTCAGGTCTGTATAAACATGCACCCTGGAGCCCTGTGGTCCCCAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR TCA 90 bp CACTGGGGACCACAGGGCTCCAGGGTGCATGTTTATACAGACCTGAATCTGGGGAAAAATGACTTGGGATaGAGAGGAAGAAAGGTCTCC +
Preference number: 2 (lower is better)
Translates to: HWGPQGSRVHVYTDLNLGKNDLG*RGRKVS
Trigger: GGAGACCTTTCTTCCTCTTCATCCCAAGTCATTTTT...CCCCAGATTCAGGTCTGTATAAACATGCACCCTGGAGCCCTGTGGTCCCCAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR GCA 90 bp ACTATTGTGGGGACAGCATCTATTGGGGGAGGGACAGATGAGGGCACTGGTCATGAGAGAGCTCCAGTTTaGTTTCCTCAGAGCTTTCTG +
Preference number: 2 (lower is better)
Translates to: TIVGTASIGGGTDEGTGHERAPV*FPQSFL
Trigger: CAGAAAGCTCTGAGGAAAGCAAACTGGAGCTCTCTC...ATGACCAGTGCCCTCATCTGTCCCTCCCCCAATAGATGCTGTCCCCACAATAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp ATAAAGGGTACTGGGAAAATGATAGGACCAGCAGGGGTGGAATGGCACAGGAAGTGGAGTTTCTCTTCCTaGCTCCTGGTGTTGCAGTGG +
Preference number: 2 (lower is better)
Translates to: IKGTGKMIGPAGVEWHRKWSFSS*LLVLQW
Trigger: CCACTGCAACACCAGGAGCCAGGAAGAGAAACTCCA...CTTCCTGTGCCATTCCACCCCTGCTGGTCCTATCATTTTCCCAGTACCCTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR TCA 90 bp TTGACAGATGGTGACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACATAGGTCTAGCCAGCTaGTGTGTGTGTATAAACAGT +
Preference number: 2 (lower is better)
Translates to: LTDGDPGSPSTGRSRHQNIGLAS*CVCINS
Trigger: ACTGTTTATACACACACATCAGCTGGCTAGACCTAT...GTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGTCACCATCTGTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp GGCCAGCCACAGACTTCCCTATGGAAATGTCAGCTGCACACGGACAGCATCCCAACTTTGCTTTCTGTTTaGAAGGTCACTGTGGAGTTT +
Preference number: 2 (lower is better)
Translates to: GQPQTSLWKCQLHTDSIPTLLSV*KVTVEF
Trigger: AAACTCCACAGTGACCTTCCAAACAGAAAGCAAAGT...TGGGATGCTGTCCGTGTGCAGCTGACATTTCCATAGGGAAGTCTGTGGCTGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp CCCAGGTGTTTCAAGCATTTGGCCACCAGACCCTTCCTGGAGCAGGAAACAAGGTTTCTGGGCTTTATTTaGACAGCCATGGAAACTCCA +
Preference number: 2 (lower is better)
Translates to: PRCFKHLATRPFLEQETRFLGFI*TAMETP
Trigger: TGGAGTTTCCATGGCTGTCCAAATAAAGCCCAGAAA...CCTTGTTTCCTGCTCCAGGAAGGGTCTGGTGGCCAAATGCTTGAAACACCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp AGGCTGGGTGCCCTGAGCCTCTTCTATTGTATTGTGAGGCCAGAAGCCAGGTTCTTGCTTTGGATGGAGTaGCAGAGGTCTTTTGAAAAC +
Preference number: 2 (lower is better)
Translates to: RLGALSLFYCIVRPEARFLLWME*QRSFEN
Trigger: GTTTTCAAAAGACCTCTGCCACTCCATCCAAAGCAA...GAACCTGGCTTCTGGCCTCACAATACAATAGAAGAGGCTCAGGGCACCCAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp CCCAGGTGTTTCAAGCATTTGGCCACCAGACCCTTCCTGGAGCAGGAAACAAGGGTGGGAAAAATGACTTaGGATGAAGAGGAAGAAAGG +
Preference number: 2 (lower is better)
Translates to: PRCFKHLATRPFLEQETRVGKMT*DEEEER
Trigger: CCTTTCTTCCTCTTCATCCCAAGTCATTTTTCCCAC...CCTTGTTTCCTGCTCCAGGAAGGGTCTGGTGGCCAAATGCTTGAAACACCTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp ATTGTGAGGCCAGAAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGTTTGGAAGGTCACTGTaGAGTTTCTCTTCCTGGCTC +
Preference number: 2 (lower is better)
Translates to: IVRPEARFLFSFGELGQRFGRSL*SFSSWL
Trigger: GAGCCAGGAAGAGAAACTCCACAGTGACCTTCCAAA...CCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTTCTGGCCTCACAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR TCA 90 bp ATTGTGAGGCCAGAAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGGTGGCAGAGGTCTTTTaGAAACATCAGTATCAGGAG +
Preference number: 2 (lower is better)
Translates to: IVRPEARFLFSFGELGQRVAEVF*KHQYQE
Trigger: CTCCTGATACTGATGTTTTCAAAAGACCTCTGCCAC...CCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTTCTGGCCTCACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR TCA 90 bp ATTGTGAGGCCAGAAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGATGTTTATACAGACCTaGATCTGGGGCTCAGGAACA +
Preference number: 2 (lower is better)
Translates to: IVRPEARFLFSFGELGQRMFIQT*IWGSGT
Trigger: TGTTCCTGAGCCCCAGATTCAGGTCTGTATAAACAT...CCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTTCTGGCCTCACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR GCA 90 bp ATTGTGAGGCCAGAAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGTTTTCTTCCTGCCTTTaGTTTGGATGGAGTGGCAGA +
Preference number: 2 (lower is better)
Translates to: IVRPEARFLFSFGELGQRFSSCL*FGWSGR
Trigger: TCTGCCACTCCATCCAAAGCAAAGGCAGGAAGAAAA...CCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTTCTGGCCTCACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp ATTGTGAGGCCAGAAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGAAGGAAAGCTTTTCTTaGTACCAGAAAGGGGAGTGG +
Preference number: 2 (lower is better)
Translates to: IVRPEARFLFSFGELGQRKESFS*YQKGEW
Trigger: CCACTCCCCTTTCTGGTACCAAGAAAAGCTTTCCTT...CCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTTCTGGCCTCACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CCA 90 bp AAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGTCACACTTGGGGGTGGCTCACCACACTGTaGTGTCAGTTGATAAATGAT +
Preference number: 2 (lower is better)
Translates to: KPGSFSPLENWDKGHTWGWLTTL*CQLIND
Trigger: ATCATTTATCAACTGACACCACAGTGTGGTGAGCCA...CCCCCAAGTGTGACCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 72 bp CCTGCGGCCCTGGGGAAGCTGGCACGGTGCCCTCGATaGCTTGTTCAGCATCTGGGACTCTCCCTCACATAC +
Preference number: 3 (lower is better)
Translates to: PAALGKLARCPR*LVQHLGLSLTY
Trigger: GTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp GTCTACCCATCCGTACTGAGACACAGGACACGGCCATaGGTGGGCAGACAGACGCACCTCCACGCGGCAGAG +
Preference number: 3 (lower is better)
Translates to: VYPSVLRHRTRP*VGRQTHLHAAE
Trigger: CTCTGCCGCGTGGAGGTGCGTCTGTCTGCCCACCCATGGCCGTGTCCTGTGTCTCAGTACGGATGGGTAGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp GGGGTGAGGACGTGGAGTTTGATTTCCCTGCGGCCCTaGGGAAGCTGGCACGGTGCCCTCGATGCCTTGTTC +
Preference number: 3 (lower is better)
Translates to: GVRTWSLISLRP*GSWHGALDALF
Trigger: GAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAGGGAAATCAAACTCCACGTCCTCACCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CAA 90 bp CTGCGGCCCTGGGGAAGCTGGCACGGTGCCCTCGATGCCTTGTTCAGCATCTGGCCCACCAGGTACACTTaGGGCAGCTGCCTGGCTTTT +
Preference number: 3 (lower is better)
Translates to: LRPWGSWHGALDALFSIWPTRYT*GSCLAF
Trigger: AAAAGCCAGGCAGCTGCCCAAAGTGTACCTGGTGGG...CCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CAA 90 bp ACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTTCCTGGCTCCTGGTGTaGCAGTGGGCTAGACAGAGC +
Preference number: 3 (lower is better)
Translates to: TRAPQVQDEADIRTPGTASWLLV*QWARQS
Trigger: GCTCTGTCTAGCCCACTGCAACACCAGGAGCCAGGA...AGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR TCA 72 bp CCCCGGTGCAGGGCAAAGCGATGCATTGACAGATGGTaGCCCGGGCTCCCCAAGTACAGGACGAAGCAGACA +
Preference number: 3 (lower is better)
Translates to: PRCRAKRCIDRW*PGLPKYRTKQT
Trigger: TGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGTCACCATCTGTCAATGCATCGCTTTGCCCTGCACCGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 72 bp TTTGATTTCCCTGCGGCCCTGGGGAAGCTGGCACGGTaGCCTCGATGCCTTGTTCAGCATCTGGGACTCTCC +
Preference number: 3 (lower is better)
Translates to: FDFPAALGKLAR*PRCLVQHLGLS
Trigger: GGAGAGTCCCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAGGGAAATCAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR TCA 72 bp GAGGACAGACACGCAGCTCTGTCTACCCATCCGTACTaGGACACAGGACACGGCCATGGGTGGGCAGACAGA +
Preference number: 3 (lower is better)
Translates to: EDRHAALSTHPY*DTGHGHGWADR
Trigger: TCTGTCTGCCCACCCATGGCCGTGTCCTGTGTCTCAGTACGGATGGGTAGACAGAGCTGCGTGTCTGTCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 72 bp CTGGCCAGCCACAGACTTCCCTATGGAAATGTCAGCTaGACACGGACAGCATCCCATTGGCCGTCCAGTGCC +
Preference number: 3 (lower is better)
Translates to: LASHRLPYGNVS*TRTASHWPSSA
Trigger: GGCACTGGACGGCCAATGGGATGCTGTCCGTGTGCAGCTGACATTTCCATAGGGAAGTCTGTGGCTGGCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp CTTGGTACCAGAAAGGGGAGTGGCCCGGCTCTGGGCTaGCTGACACAGGATCTCTTTCCTACCACCTGGACT +
Preference number: 3 (lower is better)
Translates to: LGTRKGSGPALG*LTQDLFPTTWT
Trigger: AGTCCAGGTGGTAGGAAAGAGATCCTGTGTCAGCCAGCCCAGAGCCGGGCCACTCCCCTTTCTGGTACCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CAA 90 bp ATGCCTTGTTCAGCATCTGGGACTCTCCCTCACATACCTGTTCCTTACAGATGGCCGTGTCCATACCCCTaGGCCGTTCCCTGGGGCTGG +
Preference number: 3 (lower is better)
Translates to: MPCSASGTLPHIPVPYRWPCPYP*AVPWGW
Trigger: CCAGCCCCAGGGAACGGCCAAGGGGTATGGACACGG...CCATCTGTAAGGAACAGGTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 72 bp CAGACGCACCTCCACGCGGCAGAGAGAGCTCCAGTTTaGTTTCCTCAGAGCTTTCTGCAGAGTCCGGTGGAT +
Preference number: 3 (lower is better)
Translates to: QTHLHAAERAPV*FPQSFLQSPVD
Trigger: ATCCACCGGACTCTGCAGAAAGCTCTGAGGAAAGCAAACTGGAGCTCTCTCTGCCGCGTGGAGGTGCGTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp GCCTCCAAGTGCAGTTCTGGGGATGCAGCACAGTGGTaGGGTGTTTGCCTTGCATGGCTAGGCCCTGGATTT +
Preference number: 3 (lower is better)
Translates to: ASKCSSGDAAQW*GVCLAWLGPGF
Trigger: AAATCCAGGGCCTAGCCATGCAAGGCAAACACCCCACCACTGTGCTGCATCCCCAGAACTGCACTTGGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp GGGGGCTTTCTGAAAGGATGCCTCCAAGTGCAGTTCTaGGGATGCAGCACAGTGGTGGGGTGTTTGCCTTGC +
Preference number: 3 (lower is better)
Translates to: GGFLKGCLQVQF*GCSTVVGCLPC
Trigger: GCAAGGCAAACACCCCACCACTGTGCTGCATCCCCAGAACTGCACTTGGAGGCATCCTTTCAGAAAGCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp TATGGAAATGTCAGCTGCACACGGACAGCATCCCATTaGCCGTCCAGTGCCAACCCTGGCCTCCCTCACTTC +
Preference number: 3 (lower is better)
Translates to: YGNVSCTRTASH*PSSANPGLPHF
Trigger: GAAGTGAGGGAGGCCAGGGTTGGCACTGGACGGCCAATGGGATGCTGTCCGTGTGCAGCTGACATTTCCATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 72 bp CACTCTGATCAGCATCCAGGGCTCGTTAGGGGGCAATaGCAGCCTTGGGCTGTCCAACTAGGTGTAATCTGG +
Preference number: 3 (lower is better)
Translates to: HSDQHPGLVRGQ*QPWAVQLGVIW
Trigger: CCAGATTACACCTAGTTGGACAGCCCAAGGCTGGCATTGCCCCCTAACGAGCCCTGGATGCTGATCAGAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp CAGATGAGGGCACTGGTCATCAAGGAAAGCTTTTCTTaGTACCAGAAAGGGGAGTGGCCCGGCTCTGGGCTG +
Preference number: 3 (lower is better)
Translates to: QMRALVIKESFS*YQKGEWPGSGL
Trigger: CAGCCCAGAGCCGGGCCACTCCCCTTTCTGGTACCAAGAAAAGCTTTCCTTGATGACCAGTGCCCTCATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp GCAGATGCCCCACCAGGTACACTTTGGGCAGCTGCCTaGCTTTTCTTCCTGCCTTTGCTTTGGATGGAGTGG +
Preference number: 3 (lower is better)
Translates to: ADAPPGTLWAAA*LFFLPLLWMEW
Trigger: CCACTCCATCCAAAGCAAAGGCAGGAAGAAAAGCCAGGCAGCTGCCCAAAGTGTACCTGGTGGGGCATCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CAA 90 bp CCCAGGTGTTTCAAGCATTTGGCCACCAGACCCTTCCTGGAGCAGGAAACAAGGCTTCCTGCCTTTGCTTaGGATGGAGTGGCAGAGGTC +
Preference number: 3 (lower is better)
Translates to: PRCFKHLATRPFLEQETRLPAFA*DGVAEV
Trigger: GACCTCTGCCACTCCATCCAAAGCAAAGGCAGGAAG...CCTTGTTTCCTGCTCCAGGAAGGGTCTGGTGGCCAAATGCTTGAAACACCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 72 bp GCAAGCAGATGCCCCACCAGGTACACTTTGGGCAGCTaGCTGGCTTTTCTTCCTGCCTTTGCTTTGGATGGA +
Preference number: 3 (lower is better)
Translates to: ASRCPTRYTLGS*LAFLPAFALDG
Trigger: TCCATCCAAAGCAAAGGCAGGAAGAAAAGCCAGGCAGCTGCCCAAAGTGTACCTGGTGGGGCATCTGCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp TCTGGGACTCTCCCTCACATACCTGTTCCTTACAGATaGGTCTCCTCTGAGCCTGCCAGGACTAGGGCATCA +
Preference number: 3 (lower is better)
Translates to: SGTLPHIPVPYR*VSSEPARTRAS
Trigger: TGATGCCCTAGTCCTGGCAGGCTCAGAGGAGACCCATCTGTAAGGAACAGGTATGTGAGGGAGAGTCCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp AGCTGGCACGGTGCCCTCGATGCCTTGTTCAGCATCTaGGACTCTCCCTCACATACCTGTTCCTTACAGATG +
Preference number: 3 (lower is better)
Translates to: SWHGALDALFSI*DSPSHTCSLQM
Trigger: CATCTGTAAGGAACAGGTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 72 bp CAGAGAGAGCTCCAGTTTGCTTTCCTCAGAGCTTTCTaGAGAGTCCGGTGGATGGAACCGAAGTGCTCAGCA +
Preference number: 3 (lower is better)
Translates to: QRELQFAFLRAF*RVRWMEPKCSA
Trigger: TGCTGAGCACTTCGGTTCCATCCACCGGACTCTGCAGAAAGCTCTGAGGAAAGCAAACTGGAGCTCTCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 72 bp CATCAGTATCAGGAGCTGGACCCCTTCTCATCCGGCTaGCCTCAGAGCAGTGCCTTCCCTTTGATGACTATT +
Preference number: 3 (lower is better)
Translates to: HQYQELDPFSSG*PQSSAFPLMTI
Trigger: AATAGTCATCAAAGGGAAGGCACTGCTCTGAGGGCAGCCGGATGAGAAGGGGTCCAGCTCCTGATACTGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 72 bp TTTCTGAAAGGATGCCTCCAAGTGCAGTTCTGGGGATaGAGCACAGTGGTGGGGTGTTTGCCTTGCATGGCT +
Preference number: 3 (lower is better)
Translates to: FLKGCLQVQFWG*STVVGCLPCMA
Trigger: AGCCATGCAAGGCAAACACCCCACCACTGTGCTGCATCCCCAGAACTGCACTTGGAGGCATCCTTTCAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp ATCAAGGAAAGCTTTTCTTGGTACCAGAAAGGGGAGTaGCCCGGCTCTGGGCTGGCTGACACAGGATCTCTT +
Preference number: 3 (lower is better)
Translates to: IKESFSWYQKGE*PGSGLADTGSL
Trigger: AAGAGATCCTGTGTCAGCCAGCCCAGAGCCGGGCCACTCCCCTTTCTGGTACCAAGAAAAGCTTTCCTTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp AATGTCCAGCAAGCAGATGCCCCACCAGGTACACTTTaGGCAGCTGCCTGGCTTTTCTTCCTGCCTTTGCTT +
Preference number: 3 (lower is better)
Translates to: NVQQADAPPGTL*AAAWLFFLPLL
Trigger: AAGCAAAGGCAGGAAGAAAAGCCAGGCAGCTGCCCAAAGTGTACCTGGTGGGGCATCTGCTTGCTGGACATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CAA 90 bp GTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTCTTCCCTCCTTTCCGTTTTCTGGGCTTTATTaGGACAGCCATGGAAACTCC +
Preference number: 3 (lower is better)
Translates to: VQDEADIRTPGTALPSFPFSGLY*DSHGNS
Trigger: GGAGTTTCCATGGCTGTCCAAATAAAGCCCAGAAAA...CGGAAAGGAGGGAAGAGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CAA 90 bp AGGCTGGGTGCCCTGAGCCTCTTCTATTGTATTGTGAGGCCAGAAGCCAGGTTCCTTTTCTTCCTGCCTTaGCTTTGGATGGAGTGGCAG +
Preference number: 3 (lower is better)
Translates to: RLGALSLFYCIVRPEARFLFFLP*LWMEWQ
Trigger: CTGCCACTCCATCCAAAGCAAAGGCAGGAAGAAAAG...GAACCTGGCTTCTGGCCTCACAATACAATAGAAGAGGCTCAGGGCACCCAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 72 bp CAGGTACACTTTGGGCAGCTGCCTGGCTTTTCTTCCTaGCTTTGCTTTGGATGGAGTGGCAGAGGTCTTTTG +
Preference number: 3 (lower is better)
Translates to: QVHFGQLPGFSS*LCFGWSGRGLL
Trigger: CAAAAGACCTCTGCCACTCCATCCAAAGCAAAGGCAGGAAGAAAAGCCAGGCAGCTGCCCAAAGTGTACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 72 bp GGGCATGAAAGCGTATCAGACAGGGCAAGTTACAGGTaGAAGGTAGGGGTGAGGACGTGGAGTTTGATTTCC +
Preference number: 3 (lower is better)
Translates to: GHESVSDRASYR*KVGVRTWSLIS
Trigger: GGAAATCAAACTCCACGTCCTCACCCCTACCTTGCACCTGTAACTTGCCCTGTCTGATACGCTTTCATGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp TTTCTGTTTGGAAGGTCACTGTGGAGTTTCTCTTCCTaGCTCCTGGTGTTGCAGTGGGCTAGACAGAGCCAC +
Preference number: 3 (lower is better)
Translates to: FLFGRSLWSFSS*LLVLQWARQSH
Trigger: GTGGCTCTGTCTAGCCCACTGCAACACCAGGAGCCAGGAAGAGAAACTCCACAGTGACCTTCCAAACAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp GGCCAGAAGCCAGGTTCCTTTTCTCCTTTGGAGAACTaGGACAAAGGTCACACTTGGGGGCTTTCTGAAAGG +
Preference number: 3 (lower is better)
Translates to: GQKPGSFSPLEN*DKGHTWGLSER
Trigger: CCTTTCAGAAAGCCCCCAAGTGTGACCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTTCTGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CAA 90 bp ATGCCTTGTTCAGCATCTGGGACTCTCCCTCACATACCTGTTCCTTACAGATGGAGCAGTGCCTTCCCTTaGATGACTATTTTCCCCCGG +
Preference number: 3 (lower is better)
Translates to: MPCSASGTLPHIPVPYRWSSAFP*MTIFPR
Trigger: CCGGGGGAAAATAGTCATCAAAGGGAAGGCACTGCT...CCATCTGTAAGGAACAGGTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp CTCCCCAAACTTTGCTTTCTGTTTGGAAGGTCACTGTaGAGTTTCTCTTCCTGGCTCCTGGTGTTGCAGTGG +
Preference number: 3 (lower is better)
Translates to: LPKLCFLFGRSL*SFSSWLLVLQW
Trigger: CCACTGCAACACCAGGAGCCAGGAAGAGAAACTCCACAGTGACCTTCCAAACAGAAAGCAAAGTTTGGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp GAAGAGATTTACCACAGCCCAGGTGTTTCAAGCATTTaGCCACCAGACCCTTCCTGGAGCAGGAAACAAGGA +
Preference number: 3 (lower is better)
Translates to: EEIYHSPGVSSI*PPDPSWSRKQG
Trigger: TCCTTGTTTCCTGCTCCAGGAAGGGTCTGGTGGCCAAATGCTTGAAACACCTGGGCTGTGGTAAATCTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CAA 90 bp AGGCTGGGTGCCCTGAGCCTCTTCTATTGTATTGTGAGGCCAGAAGCCAGGTTCAACTTTGCTTTCTGTTaGGAAGGTCACTGTGGAGTT +
Preference number: 3 (lower is better)
Translates to: RLGALSLFYCIVRPEARFNFAFC*EGHCGV
Trigger: AACTCCACAGTGACCTTCCAAACAGAAAGCAAAGTT...GAACCTGGCTTCTGGCCTCACAATACAATAGAAGAGGCTCAGGGCACCCAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CAA 90 bp GGCCAGCCACAGACTTCCCTATGGAAATGTCAGCTGCACACGGACAGCATCCCAAGGAACATTTCTCTCTaGACCTCATTATGTGGGAAA +
Preference number: 3 (lower is better)
Translates to: GQPQTSLWKCQLHTDSIPRNISL*TSLCGK
Trigger: TTTCCCACATAATGAGGTCAAGAGAGAAATGTTCCT...TGGGATGCTGTCCGTGTGCAGCTGACATTTCCATAGGGAAGTCTGTGGCTGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR TCA 72 bp CCTGGCTCTTTTGTGAGGAACCTGAAAACCTTTCACTaGGTTGTCACCCGTGAGCATCCACAAGGACAGTTG +
Preference number: 3 (lower is better)
Translates to: PGSFVRNLKTFH*VVTREHPQGQL
Trigger: CAACTGTCCTTGTGGATGCTCACGGGTGACAACTCAGTGAAAGGTTTTCAGGTTCCTCACAAAAGAGCCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR TCA 72 bp CCTGCCTTTGCTTTGGATGGAGTGGCAGAGGTCTTTTaGAAACATCAGTATCAGGAGCTGGACCCCTTCTCA +
Preference number: 3 (lower is better)
Translates to: PAFALDGVAEVF*KHQYQELDPFS
Trigger: TGAGAAGGGGTCCAGCTCCTGATACTGATGTTTTCAAAAGACCTCTGCCACTCCATCCAAAGCAAAGGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp TTGCTTTCCTCAGAGCTTTCTGCAGAGTCCGGTGGATaGAACCGAAGTGCTCAGCACTGGAAGGAAAAGTTT +
Preference number: 3 (lower is better)
Translates to: LLSSELSAESGG*NRSAQHWKEKF
Trigger: AAACTTTTCCTTCCAGTGCTGAGCACTTCGGTTCCATCCACCGGACTCTGCAGAAAGCTCTGAGGAAAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp ATTCTGCCTGTGACTGCCAAGGCTTATTCTGTGTGGTaGGGGAAGAGATTTACCACAGCCCAGGTGTTTCAA +
Preference number: 3 (lower is better)
Translates to: ILPVTAKAYSVW*GKRFTTAQVFQ
Trigger: TTGAAACACCTGGGCTGTGGTAAATCTCTTCCCCCACCACACAGAATAAGCCTTGGCAGTCACAGGCAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp AAATGCCACAAAATACACTCCCCAGAGCTGAGGCCATaGAGGTTGTTCTGGCTGGTTAGAAACTGTGAGGGT +
Preference number: 3 (lower is better)
Translates to: KCHKIHSPELRP*RLFWLVRNCEG
Trigger: ACCCTCACAGTTTCTAACCAGCCAGAACAACCTCCATGGCCTCAGCTCTGGGGAGTGTATTTTGTGGCATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CAA 90 bp ATGCCTTGTTCAGCATCTGGGACTCTCCCTCACATACCTGTTCCTTACAGATGGAACCCTCCCCAAACTTaGCTTTCTGTTTGGAAGGTC +
Preference number: 3 (lower is better)
Translates to: MPCSASGTLPHIPVPYRWNPPQT*LSVWKV
Trigger: GACCTTCCAAACAGAAAGCAAAGTTTGGGGAGGGTT...CCATCTGTAAGGAACAGGTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR-3UTR CAA 90 bp ATTCCACAGAGAGGGAATAAAATCTTAGCTCTTCTGAGGGCCCGGTCAGTACCCCAAGGAAAGCTTTTCTaGGTACCAGAAAGGGGAGTG +
Preference number: 3 (lower is better)
Translates to: IPQRGNKILALLRARSVPQGKLF*VPERGV
Trigger: CACTCCCCTTTCTGGTACCAAGAAAAGCTTTCCTTG...GGGTACTGACCGGGCCCTCAGAAGAGCTAAGATTTTATTCCCTCTCTGTGGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR TCA 72 bp CTGCCGGGTCCATTTCTTTCTATCTCATCTCTTCACTaGCGGGCTAGTTGGCTCTTTAATGTCCAGCAAGCA +
Preference number: 3 (lower is better)
Translates to: LPGPFLSISSLH*RASWLFNVQQA
Trigger: TGCTTGCTGGACATTAAAGAGCCAACTAGCCCGTCAGTGAAGAGATGAGATAGAAAGAAATGGACCCGGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp TTTTCTCCTTTGGAGAACTGGGACAAAGGTCACACTTaGGGGCTTTCTGAAAGGATGCCTCCAAGTGCAGTT +
Preference number: 3 (lower is better)
Translates to: FSPLENWDKGHT*GLSERMPPSAV
Trigger: AACTGCACTTGGAGGCATCCTTTCAGAAAGCCCCCAAGTGTGACCTTTGTCCCAGTTCTCCAAAGGAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR TCA 72 bp CTCTTGACCTCATTATGTGGGAAAAATGACTTGGGATaGAGAGGAAGAAAGGTCTCCTCTGGAGTGATCCGT +
Preference number: 3 (lower is better)
Translates to: LLTSLCGKNDLG*RGRKVSSGVIR
Trigger: ACGGATCACTCCAGAGGAGACCTTTCTTCCTCTTCATCCCAAGTCATTTTTCCCACATAATGAGGTCAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR GCA 72 bp TGGTGTTCTGCAAAATCACCAACCCTCCCCAAACTTTaGTTTCTGTTTGGAAGGTCACTGTGGAGTTTCTCT +
Preference number: 3 (lower is better)
Translates to: WCSAKSPTLPKL*FLFGRSLWSFS
Trigger: AGAGAAACTCCACAGTGACCTTCCAAACAGAAAGCAAAGTTTGGGGAGGGTTGGTGATTTTGCAGAACACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CCA 72 bp ATTTGCTGTCATTATTTTATCATGGTTTTAATCTCATaGCTCACCACACTGTGGTGTCAGTTGATAAATGAT +
Preference number: 3 (lower is better)
Translates to: ICCHYFIMVLIS*LTTLWCQLIND
Trigger: ATCATTTATCAACTGACACCACAGTGTGGTGAGCCATGAGATTAAAACCATGATAAAATAATGACAGCAAAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp CTGCGGCCCTGGGGAAGCTGGCACGGTGCCCTCGATGCCTTGTTCAGCATCTGGCCCGAGGCAGCGTGGTaGGGTTGTTGTTGGACAGGT +
Preference number: 4 (lower is better)
Translates to: LRPWGSWHGALDALFSIWPEAAW*GCCWTG
Trigger: ACCTGTCCAACAACAACCTCACCACGCTGCCTCGGG...CCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp CCAGGGCTCGTTAGGGGGCAATGCCAGCCTTGGGCTGTCCAACTAGGTGTAATCCGTGTGGGGCAGCCCTaGCGGGATGCTGCTCAGGTG +
Preference number: 4 (lower is better)
Translates to: PGLVRGQCQPWAVQLGVIRVGQP*RDAAQV
Trigger: CACCTGAGCAGCATCCCGTCAGGGCTGCCCCACACG...GATTACACCTAGTTGGACAGCCCAAGGCTGGCATTGCCCCCTAACGAGCCCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp CTGCGGCCCTGGGGAAGCTGGCACGGTGCCCTCGATGCCTTGTTCAGCATCTGGAGTCCCGCAGGTCCATaGTGGCTGTGGTCATCACGA +
Preference number: 4 (lower is better)
Translates to: LRPWGSWHGALDALFSIWSPAGP*WLWSSR
Trigger: TCGTGATGACCACAGCCACCATGGACCTGCGGGACT...CCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp CCAGGGCTCGTTAGGGGGCAATGCCAGCCTTGGGCTGTCCAACTAGGTGTAATCGCAGCCCTGACGGGATaGTGCTCAGGTGGTTCCGGC +
Preference number: 4 (lower is better)
Translates to: PGLVRGQCQPWAVQLGVIAALTG*CSGGSG
Trigger: GCCGGAACCACCTGAGCAGCATCCCGTCAGGGCTGC...GATTACACCTAGTTGGACAGCCCAAGGCTGGCATTGCCCCCTAACGAGCCCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp CTGCGGCCCTGGGGAAGCTGGCACGGTGCCCTCGATGCCTTGTTCAGCATCTGGGAGCCAAAGAGTCCCTaGCGATGGTGCGCACATTGT +
Preference number: 4 (lower is better)
Translates to: LRPWGSWHGALDALFSIWEPKSP*RWCAHC
Trigger: ACAATGTGCGCACCATCGCCAGGGACTCTTTGGCTC...CCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CAA 72 bp CGGCCCTGGGGAAGCTGGCACGGTGCCCTCGATGCCTaGTTCAGCATCTGGGACTCTCCCTCACATACCTGT +
Preference number: 4 (lower is better)
Translates to: RPWGSWHGALDA*FSIWDSPSHTC
Trigger: ACAGGTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp GTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTCTTCCCTCCTTTCCGGGTTCTGCAGCCGGCTaGAGGTGTCGTCGGCAATGC +
Preference number: 4 (lower is better)
Translates to: VQDEADIRTPGTALPSFPGSAAG*RCRRQC
Trigger: GCATTGCCGACGACACCTTCAGCCGGCTGCAGAACC...CGGAAAGGAGGGAAGAGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp GACCCAGGAAGTGCTGAGAGGACAGACACGCAGCTCTGTCTACCCATCCGTACTAGCAGCACCGCCCTGTaGCCCCGCCTCAAAGCACTC +
Preference number: 4 (lower is better)
Translates to: DPGSAERTDTQLCLPIRTSSTAL*PRLKAL
Trigger: GAGTGCTTTGAGGCGGGGTCACAGGGCGGTGCTGCT...AGTACGGATGGGTAGACAGAGCTGCGTGTCTGTCCTCTCAGCACTTCCTGGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp ACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTCGTCCTTCCTCCTGCTaGCCCTGTTGTAGACCCTCT +
Preference number: 4 (lower is better)
Translates to: TRAPQVQDEADIRTPGTARPSSC*PCCRPS
Trigger: AGAGGGTCTACAACAGGGGCAGCAGGAGGAAGGACG...AGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp ACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTCCAGCTCCCGCATCTTaGCCAGGGTGTTGTAGGGAA +
Preference number: 4 (lower is better)
Translates to: TRAPQVQDEADIRTPGTAPAPAS*PGCCRE
Trigger: TTCCCTACAACACCCTGGCCAAGATGCGGGAGCTGG...AGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp ACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTGTAAACAGAGAGCCCTaGGGTGTGGTGGCAGAGGCA +
Preference number: 4 (lower is better)
Translates to: TRAPQVQDEADIRTPGTAVNREP*GVVAEA
Trigger: TGCCTCTGCCACCACACCCCAGGGCTCTCTGTTTAC...AGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp CCAGGGCTCGTTAGGGGGCAATGCCAGCCTTGGGCTGTCCAACTAGGTGTAATCCAGAGGCATGGTTGCTaGCTGTGGTCTTGGCGGCTG +
Preference number: 4 (lower is better)
Translates to: PGLVRGQCQPWAVQLGVIQRHGC*LWSWRL
Trigger: CAGCCGCCAAGACCACAGTCAGCAACCATGCCTCTG...GATTACACCTAGTTGGACAGCCCAAGGCTGGCATTGCCCCCTAACGAGCCCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp ACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTTTGTTGTCCTGCAGATaGAGCTCTCTCAGGGAGCGG +
Preference number: 4 (lower is better)
Translates to: TRAPQVQDEADIRTPGTALLSCR*SSLRER
Trigger: CCGCTCCCTGAGAGAGCTGCATCTGCAGGACAACAA...AGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp CCGTCACGTGTTTGTTATCGGCTTCTCTCTGCTGGCCCTGAATGGAGCTCGAGGGCCCTGACGGGATGCTaGTCAGGTGGTTCCGGCTCA +
Preference number: 4 (lower is better)
Translates to: PSRVCYRLLSAGPEWSSRALTGC*SGGSGS
Trigger: TGAGCCGGAACCACCTGAGCAGCATCCCGTCAGGGC...CCTCGAGCTCCATTCAGGGCCAGCAGAGAGAAGCCGATAACAAACACGTGACGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp CACTGGGGACCACAGGGCTCCAGGGTGCATGTTTATACAGACCTGAATCTGGGGGGTTGGCCAGCAGGTTaGCATCCAGAACCAGGCGCC +
Preference number: 4 (lower is better)
Translates to: HWGPQGSRVHVYTDLNLGGWPAG*HPEPGA
Trigger: GGCGCCTGGTTCTGGATGGCAACCTGCTGGCCAACC...CCCCAGATTCAGGTCTGTATAAACATGCACCCTGGAGCCCTGTGGTCCCCAGTG
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp TTGACAGATGGTGACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACTCACGACAGTGGCTGTaGCCGTGGCAGCAGGTGTGG +
Preference number: 4 (lower is better)
Translates to: LTDGDPGSPSTGRSRHQNSRQWL*PWQQVW
Trigger: CCACACCTGCTGCCACGGTCACAGCCACTGTCGTGA...GTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGTCACCATCTGTCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp GGCCAGCCACAGACTTCCCTATGGAAATGTCAGCTGCACACGGACAGCATCCCACCCGCAGGTCCATGGTaGCTGTGGTCATCACGACAG +
Preference number: 4 (lower is better)
Translates to: GQPQTSLWKCQLHTDSIPPAGPW*LWSSRQ
Trigger: CTGTCGTGATGACCACAGCCACCATGGACCTGCGGG...TGGGATGCTGTCCGTGTGCAGCTGACATTTCCATAGGGAAGTCTGTGGCTGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp GTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTCTTCCCTCCTTTCCGGGGATGCTGCTCAGGTaGTTCCGGCTCAGGAAAAGC +
Preference number: 4 (lower is better)
Translates to: VQDEADIRTPGTALPSFPGMLLR*FRLRKS
Trigger: GCTTTTCCTGAGCCGGAACCACCTGAGCAGCATCCC...CGGAAAGGAGGGAAGAGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp CTGCGGCCCTGGGGAAGCTGGCACGGTGCCCTCGATGCCTTGTTCAGCATCTGGCATTGGAGGGAAATATaGTGTGCACCACGTACTCCT +
Preference number: 4 (lower is better)
Translates to: LRPWGSWHGALDALFSIWHWREI*CAPRTP
Trigger: AGGAGTACGTGGTGCACACCATATTTCCCTCCAATG...CCAGATGCTGAACAAGGCATCGAGGGCACCGTGCCAGCTTCCCCAGGGCCGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp CACTGGGGACCACAGGGCTCCAGGGTGCATGTTTATACAGACCTGAATCTGGGGCTGAGGGGATGGATGTaGGTCCCCGGTCATTGCAGT +
Preference number: 4 (lower is better)
Translates to: HWGPQGSRVHVYTDLNLGLRGWM*VPGHCS
Trigger: ACTGCAATGACCGGGGACTCACATCCATCCCCTCAG...CCCCAGATTCAGGTCTGTATAAACATGCACCCTGGAGCCCTGTGGTCCCCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp CGCAGCTCTGTCTACCCATCCGTACTGAGACACAGGACACGGCCATGGGTGGGCGGATGCCCGCATTGTTaGTCTGGTTGTTCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: RSSVYPSVLRHRTRPWVGGCPHC*SGCSVG
Trigger: ACCTACAGAACAACCAGATCAACAATGCGGGCATCC...GCCCACCCATGGCCGTGTCCTGTGTCTCAGTACGGATGGGTAGACAGAGCTGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp CCCAGGTGTTTCAAGCATTTGGCCACCAGACCCTTCCTGGAGCAGGAAACAAGGAGGTGTCGTCGGCAATaGGCTGGTTGGCCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: PRCFKHLATRPFLEQETRRCRRQ*AGWPAG
Trigger: ACCTGCTGGCCAACCAGCGCATTGCCGACGACACCT...CCTTGTTTCCTGCTCCAGGAAGGGTCTGGTGGCCAAATGCTTGAAACACCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp ACTATTGTGGGGACAGCATCTATTGGGGGAGGGACAGATGAGGGCACTGGTCATTGGGAGGCGCAGTCCTaGCCTCTTGGCCTTGAGGGT +
Preference number: 4 (lower is better)
Translates to: TIVGTASIGGGTDEGTGHWEAQS*PLGLEG
Trigger: ACCCTCAAGGCCAAGAGGCCAGGACTGCGCCTCCCA...ATGACCAGTGCCCTCATCTGTCCCTCCCCCAATAGATGCTGTCCCCACAATAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CAA 72 bp AGGTCACTGTGGAGTTTCTCTTCCTGGCTCCTGGTGTaGCAGTGGGCTAGACAGAGCCACGTGACACACCGG +
Preference number: 4 (lower is better)
Translates to: RSLWSFSSWLLV*QWARQSHVTHR
Trigger: CCGGTGTGTCACGTGGCTCTGTCTAGCCCACTGCAACACCAGGAGCCAGGAAGAGAAACTCCACAGTGACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CAA 72 bp ACAGACGCACCTCCACGCGGCAGAGAGAGCTCCAGTTaGCTTTCCTCAGAGCTTTCTGCAGAGTCCGGTGGA +
Preference number: 4 (lower is better)
Translates to: TDAPPRGRESSS*LSSELSAESGG
Trigger: TCCACCGGACTCTGCAGAAAGCTCTGAGGAAAGCAAACTGGAGCTCTCTCTGCCGCGTGGAGGTGCGTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CAA 72 bp CTATGGAAATGTCAGCTGCACACGGACAGCATCCCATaGGCCGTCCAGTGCCAACCCTGGCCTCCCTCACTT +
Preference number: 4 (lower is better)
Translates to: LWKCQLHTDSIP*AVQCQPWPPSL
Trigger: AAGTGAGGGAGGCCAGGGTTGGCACTGGACGGCCAATGGGATGCTGTCCGTGTGCAGCTGACATTTCCATAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp GTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTCTTCCCTCCTTTCCGGGTCATTGCAGTAGATaGAGCCATTGTCACAGCGGC +
Preference number: 4 (lower is better)
Translates to: VQDEADIRTPGTALPSFPGHCSR*SHCHSG
Trigger: GCCGCTGTGACAATGGCTTCATCTACTGCAATGACC...CGGAAAGGAGGGAAGAGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp GGGCACTGGTCATCAAGGAAAGCTTTTCTTGGTACCAGAAAGGGGAGTGGCCCGATCGTCGGGGATGTCTaGGGGGATGGATGTGAGTCC +
Preference number: 4 (lower is better)
Translates to: GHWSSRKAFLGTRKGSGPIVGDV*GDGCES
Trigger: GGACTCACATCCATCCCCTCAGACATCCCCGACGAT...CGGGCCACTCCCCTTTCTGGTACCAAGAAAAGCTTTCCTTGATGACCAGTGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp GTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTCTTCCCTCCTTTCCGGATTCGGATAGAGTCTaGCGTCAGTGGCTTCACCTG +
Preference number: 4 (lower is better)
Translates to: VQDEADIRTPGTALPSFPDSDRV*RQWLHL
Trigger: CAGGTGAAGCCACTGACGGCAGACTCTATCCGAATC...CGGAAAGGAGGGAAGAGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp CCAGGGCTCGTTAGGGGGCAATGCCAGCCTTGGGCTGTCCAACTAGGTGTAATCGCTATCTGCTGTCTCTaGCTTGGCACACACAGGTGT +
Preference number: 4 (lower is better)
Translates to: PGLVRGQCQPWAVQLGVIAICCL*LGTHRC
Trigger: ACACCTGTGTGTGCCAAGGCAGAGACAGCAGATAGC...GATTACACCTAGTTGGACAGCCCAAGGCTGGCATTGCCCCCTAACGAGCCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp CCAGGGCTCGTTAGGGGGCAATGCCAGCCTTGGGCTGTCCAACTAGGTGTAATCAGGGCCATAGCTATCTaGTGTCTCTGCCTTGGCACA +
Preference number: 4 (lower is better)
Translates to: PGLVRGQCQPWAVQLGVIRAIAI*CLCLGT
Trigger: TGTGCCAAGGCAGAGACAGCAGATAGCTATGGCCCT...GATTACACCTAGTTGGACAGCCCAAGGCTGGCATTGCCCCCTAACGAGCCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp TTGACAGATGGTGACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACAGTCGTCCTTCCTCCTaGTGCCCCTGTTGTAGACCC +
Preference number: 4 (lower is better)
Translates to: LTDGDPGSPSTGRSRHQNSRPSS*CPCCRP
Trigger: GGGTCTACAACAGGGGCAGCAGGAGGAAGGACGACT...GTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGTCACCATCTGTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp TTGACAGATGGTGACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACGGTCCATGGTGGCTGTaGTCATCACGACAGTGGCTG +
Preference number: 4 (lower is better)
Translates to: LTDGDPGSPSTGRSRHQNGPWWL*SSRQWL
Trigger: CAGCCACTGTCGTGATGACCACAGCCACCATGGACC...GTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGTCACCATCTGTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp CCCAGGTGTTTCAAGCATTTGGCCACCAGACCCTTCCTGGAGCAGGAAACAAGGGTAGGTAGAGGGTGGTaGCATCGTCGGGGATGTCTG +
Preference number: 4 (lower is better)
Translates to: PRCFKHLATRPFLEQETRVGRGW*HRRGCL
Trigger: CAGACATCCCCGACGATGCCACCACCCTCTACCTAC...CCTTGTTTCCTGCTCCAGGAAGGGTCTGGTGGCCAAATGCTTGAAACACCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp CCAGGGCTCGTTAGGGGGCAATGCCAGCCTTGGGCTGTCCAACTAGGTGTAATCAAGAGTCCCTGGCGATaGTGCGCACATTGTTGTCCT +
Preference number: 4 (lower is better)
Translates to: PGLVRGQCQPWAVQLGVIKSPWR*CAHCCP
Trigger: AGGACAACAATGTGCGCACCATCGCCAGGGACTCTT...GATTACACCTAGTTGGACAGCCCAAGGCTGGCATTGCCCCCTAACGAGCCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp CCGTCACGTGTTTGTTATCGGCTTCTCTCTGCTGGCCCTGAATGGAGCTCGAGGGCACGTACCAGCAAATaGCTCCCAGGACCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: PSRVCYRLLSAGPEWSSRARTSK*LPGPGR
Trigger: TCTTCCTGGTCCTGGGAGCCATTTGCTGGTACGTGC...CCTCGAGCTCCATTCAGGGCCAGCAGAGAGAAGCCGATAACAAACACGTGACGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp AGCTTTTCTTGGTACCAGAAAGGGGAGTGGCCCGGCTCTGGGCTGGCTGACACATCAGGAAAAGCAGCTTaGGCTGCTTGCTGTCAGCAA +
Preference number: 4 (lower is better)
Translates to: SFSWYQKGEWPGSGLADTSGKAA*AACCQQ
Trigger: TTGCTGACAGCAAGCAGCTCAAGCTGCTTTTCCTGA...TGTGTCAGCCAGCCCAGAGCCGGGCCACTCCCCTTTCTGGTACCAAGAAAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp TTGACAGATGGTGACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACGTGGCTTCACCTGGATaGCCAATGTCTTGGCGCCAT +
Preference number: 4 (lower is better)
Translates to: LTDGDPGSPSTGRSRHQNVASPG*PMSWRH
Trigger: ATGGCGCCAAGACATTGGTCATCCAGGTGAAGCCAC...GTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGTCACCATCTGTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp CCGTCACGTGTTTGTTATCGGCTTCTCTCTGCTGGCCCTGAATGGAGCTCGAGGCACCCTTGCAGAGGCTaGTGCCATTGGAGGGAAATA +
Preference number: 4 (lower is better)
Translates to: PSRVCYRLLSAGPEWSSRHPCRG*CHWREI
Trigger: TATTTCCCTCCAATGGCAGCAGCCTCTGCAAGGGTG...CCTCGAGCTCCATTCAGGGCCAGCAGAGAGAAGCCGATAACAAACACGTGACGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp TTGACAGATGGTGACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACCCTCGATGCTCACGGTaGAAACGGAGTTGTCGTCCA +
Preference number: 4 (lower is better)
Translates to: LTDGDPGSPSTGRSRHQNPRCSR*KRSCRP
Trigger: TGGACGACAACTCCGTTTCCACCGTGAGCATCGAGG...GTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGTCACCATCTGTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp AAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGTCACACTTGGGGGCGGCAATGCGCTGGTTaGCCAGCAGGTTGCCATCCA +
Preference number: 4 (lower is better)
Translates to: KPGSFSPLENWDKGHTWGRQCAG*PAGCHP
Trigger: TGGATGGCAACCTGCTGGCCAACCAGCGCATTGCCG...CCCCCAAGTGTGACCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp AAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGTCACACTTGGGGGTCGTCGGCAATGCGCTaGTTGGCCAGCAGGTTGCCA +
Preference number: 4 (lower is better)
Translates to: KPGSFSPLENWDKGHTWGSSAMR*LASRLP
Trigger: TGGCAACCTGCTGGCCAACCAGCGCATTGCCGACGA...CCCCCAAGTGTGACCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp ATTGTGAGGCCAGAAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGACCTTCTCAGGGCCCTaGCACATGAGGCCCCGCACA +
Preference number: 4 (lower is better)
Translates to: IVRPEARFLFSFGELGQRTFSGP*HMRPRT
Trigger: TGTGCGGGGCCTCATGTGCCAGGGCCCTGAGAAGGT...CCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTTCTGGCCTCACAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp TTGACAGATGGTGACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACGTGGTGGCAGAGGCATaGTTGCTGACTGTGGTCTTG +
Preference number: 4 (lower is better)
Translates to: LTDGDPGSPSTGRSRHQNVVAEA*LLTVVL
Trigger: CAAGACCACAGTCAGCAACCATGCCTCTGCCACCAC...GTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGTCACCATCTGTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp ACTATTGTGGGGACAGCATCTATTGGGGGAGGGACAGATGAGGGCACTGGTCATGTCAATGTTGGAGTCTaGGAGGCGCAGTCCTGGCCT +
Preference number: 4 (lower is better)
Translates to: TIVGTASIGGGTDEGTGHVNVGV*EAQSWP
Trigger: AGGCCAGGACTGCGCCTCCCAGACTCCAACATTGAC...ATGACCAGTGCCCTCATCTGTCCCTCCCCCAATAGATGCTGTCCCCACAATAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp GACCCAGGAAGTGCTGAGAGGACAGACACGCAGCTCTGTCTACCCATCCGTACTCATCGCCAGTGGCCATaGGGTAGTCAATGTTGGAGT +
Preference number: 4 (lower is better)
Translates to: DPGSAERTDTQLCLPIRTHRQWP*GSQCWS
Trigger: ACTCCAACATTGACTACCCCATGGCCACTGGCGATG...AGTACGGATGGGTAGACAGAGCTGCGTGTCTGTCCTCTCAGCACTTCCTGGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp CCCAGGTGTTTCAAGCATTTGGCCACCAGACCCTTCCTGGAGCAGGAAACAAGGCCAGCATTCTGTTCCTaGTTGAGCGTGGTGGTAGGG +
Preference number: 4 (lower is better)
Translates to: PRCFKHLATRPFLEQETRPAFCS*LSVVVG
Trigger: CCCTACCACCACGCTCAACCAGGAACAGAATGCTGG...CCTTGTTTCCTGCTCCAGGAAGGGTCTGGTGGCCAAATGCTTGAAACACCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CAA 72 bp ACAGATGAGGGCACTGGTCATCAAGGAAAGCTTTTCTaGGTACCAGAAAGGGGAGTGGCCCGGCTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: TDEGTGHQGKLF*VPERGVARLWA
Trigger: AGCCCAGAGCCGGGCCACTCCCCTTTCTGGTACCAAGAAAAGCTTTCCTTGATGACCAGTGCCCTCATCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp CACTGGGGACCACAGGGCTCCAGGGTGCATGTTTATACAGACCTGAATCTGGGGTGTAGGGAATGTGACTaGTGGCATTGTCCTGCAGGT +
Preference number: 4 (lower is better)
Translates to: HWGPQGSRVHVYTDLNLGCRECD*WHCPAG
Trigger: ACCTGCAGGACAATGCCATCAGTCACATTCCCTACA...CCCCAGATTCAGGTCTGTATAAACATGCACCCTGGAGCCCTGTGGTCCCCAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp GGGCACTGGTCATCAAGGAAAGCTTTTCTTGGTACCAGAAAGGGGAGTGGCCCGCGCACATTGTTGTCCTaGAGATGCAGCTCTCTCAGG +
Preference number: 4 (lower is better)
Translates to: GHWSSRKAFLGTRKGSGPRTLLS*RCSSLR
Trigger: CCTGAGAGAGCTGCATCTGCAGGACAACAATGTGCG...CGGGCCACTCCCCTTTCTGGTACCAAGAAAAGCTTTCCTTGATGACCAGTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp ATGCCTTGTTCAGCATCTGGGACTCTCCCTCACATACCTGTTCCTTACAGATGGTCTCCAGCAGCGGGATaGGAGCCAAAGAGTCCCTGG +
Preference number: 4 (lower is better)
Translates to: MPCSASGTLPHIPVPYRWSPAAG*EPKSPW
Trigger: CCAGGGACTCTTTGGCTCGCATCCCGCTGCTGGAGA...CCATCTGTAAGGAACAGGTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp ATTGTGAGGCCAGAAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGGAGTTGTCGTCCAGGTaGAGCTTCTCCAGCAGCGGG +
Preference number: 4 (lower is better)
Translates to: IVRPEARFLFSFGELGQRELSSR*SFSSSG
Trigger: CCCGCTGCTGGAGAAGCTGCACCTGGACGACAACTC...CCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTTCTGGCCTCACAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp ATGCCTTGTTCAGCATCTGGGACTCTCCCTCACATACCTGTTCCTTACAGATGGAGCTCGCCAGCCCGGTaGACGTACCAGCAAATGGCT +
Preference number: 4 (lower is better)
Translates to: MPCSASGTLPHIPVPYRWSSPAR*TYQQMA
Trigger: AGCCATTTGCTGGTACGTGCACCGGGCTGGCGAGCT...CCATCTGTAAGGAACAGGTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp ACTATTGTGGGGACAGCATCTATTGGGGGAGGGACAGATGAGGGCACTGGTCATTGGGGTAGTCAATGTTaGAGTCTGGGAGGCGCAGTC +
Preference number: 4 (lower is better)
Translates to: TIVGTASIGGGTDEGTGHWGSQC*SLGGAV
Trigger: GACTGCGCCTCCCAGACTCCAACATTGACTACCCCA...ATGACCAGTGCCCTCATCTGTCCCTCCCCCAATAGATGCTGTCCCCACAATAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp TTGACAGATGGTGACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACAGAGTCTGCCGTCAGTaGCTTCACCTGGATGACCAA +
Preference number: 4 (lower is better)
Translates to: LTDGDPGSPSTGRSRHQNRVCRQ*LHLDDQ
Trigger: TTGGTCATCCAGGTGAAGCCACTGACGGCAGACTCT...GTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGTCACCATCTGTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp ATTCCACAGAGAGGGAATAAAATCTTAGCTCTTCTGAGGGCCCGGTCAGTACCCTGGAGCGGTACGGGTTaGTGGGTAGCATCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: IPQRGNKILALLRARSVPWSGTG*WVASAV
Trigger: GACTGCAGATGCTACCCATCAACCCGTACCGCTCCA...GGGTACTGACCGGGCCCTCAGAAGAGCTAAGATTTTATTCCCTCTCTGTGGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp ACTATTGTGGGGACAGCATCTATTGGGGGAGGGACAGATGAGGGCACTGGTCATGGACTTGGGCTCCAGTaGTGTCAGCAAGTACTCTGT +
Preference number: 4 (lower is better)
Translates to: TIVGTASIGGGTDEGTGHGLGLQ*CQQVLC
Trigger: ACAGAGTACTTGCTGACAGCACTGGAGCCCAAGTCC...ATGACCAGTGCCCTCATCTGTCCCTCCCCCAATAGATGCTGTCCCCACAATAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp GACCCAGGAAGTGCTGAGAGGACAGACACGCAGCTCTGTCTACCCATCCGTACTGAGGGAAATATGGTGTaGACCACGTACTCCTCTTTG +
Preference number: 4 (lower is better)
Translates to: DPGSAERTDTQLCLPIRTEGNMV*TTYSSL
Trigger: CAAAGAGGAGTACGTGGTGCACACCATATTTCCCTC...AGTACGGATGGGTAGACAGAGCTGCGTGTCTGTCCTCTCAGCACTTCCTGGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp ATTGTGAGGCCAGAAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGTGGCGCCATCGCCAGTaGCCATGGGGTAGTCAATGT +
Preference number: 4 (lower is better)
Translates to: IVRPEARFLFSFGELGQRWRHRQ*PWGSQC
Trigger: ACATTGACTACCCCATGGCCACTGGCGATGGCGCCA...CCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTTCTGGCCTCACAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp TTGACAGATGGTGACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACAGAGGCTGCTGCCATTaGAGGGAAATATGGTGTGCA +
Preference number: 4 (lower is better)
Translates to: LTDGDPGSPSTGRSRHQNRGCCH*REIWCA
Trigger: TGCACACCATATTTCCCTCCAATGGCAGCAGCCTCT...GTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGTCACCATCTGTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CAA 72 bp GGAAGAGATTTACCACAGCCCAGGTGTTTCAAGCATTaGGCCACCAGACCCTTCCTGGAGCAGGAAACAAGG +
Preference number: 4 (lower is better)
Translates to: GRDLPQPRCFKH*ATRPFLEQETR
Trigger: CCTTGTTTCCTGCTCCAGGAAGGGTCTGGTGGCCAAATGCTTGAAACACCTGGGCTGTGGTAAATCTCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CAA 72 bp GAGGGTAGAAAGGCTGGGTGCCCTGAGCCTCTTCTATaGTATTGTGAGGCCAGAAGCCAGGTTCCTTTTCTC +
Preference number: 4 (lower is better)
Translates to: EGRKAGCPEPLL*YCEARSQVPFL
Trigger: GAGAAAAGGAACCTGGCTTCTGGCCTCACAATACAATAGAAGAGGCTCAGGGCACCCAGCCTTTCTACCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CAA 72 bp CACAAAATACACTCCCCAGAGCTGAGGCCATGGAGGTaGTTCTGGCTGGTTAGAAACTGTGAGGGTCAGGCT +
Preference number: 4 (lower is better)
Translates to: HKIHSPELRPWR*FWLVRNCEGQA
Trigger: AGCCTGACCCTCACAGTTTCTAACCAGCCAGAACAACCTCCATGGCCTCAGCTCTGGGGAGTGTATTTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp ATGCCTTGTTCAGCATCTGGGACTCTCCCTCACATACCTGTTCCTTACAGATGGTTGGTCTTGAGGTCCTaGGGGATGCCCGCATTGTTG +
Preference number: 4 (lower is better)
Translates to: MPCSASGTLPHIPVPYRWLVLRS*GMPALL
Trigger: CAACAATGCGGGCATCCCTCAGGACCTCAAGACCAA...CCATCTGTAAGGAACAGGTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp ATTGTGAGGCCAGAAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGTCTGTAGGTAGAGGGTaGTGGCATCGTCGGGGATGT +
Preference number: 4 (lower is better)
Translates to: IVRPEARFLFSFGELGQRSVGRG*WHRRGC
Trigger: ACATCCCCGACGATGCCACCACCCTCTACCTACAGA...CCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTTCTGGCCTCACAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp AAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGTCACACTTGGGGGCTGCTGTCTCTGCCTTaGCACACACAGGTGTCTCAT +
Preference number: 4 (lower is better)
Translates to: KPGSFSPLENWDKGHTWGLLSLP*HTQVSH
Trigger: ATGAGACACCTGTGTGTGCCAAGGCAGAGACAGCAG...CCCCCAAGTGTGACCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR TCA 90 bp AAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGTCACACTTGGGGGATCCTTCTTGGTCCCTaGCTCCATGTAGTCGTCCTT +
Preference number: 4 (lower is better)
Translates to: KPGSFSPLENWDKGHTWGILLGP*LHVVVL
Trigger: AAGGACGACTACATGGAGTCAGGGACCAAGAAGGAT...CCCCCAAGTGTGACCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp ATAAAGGGTACTGGGAAAATGATAGGACCAGCAGGGGTGGAATGGCACAGGAAGGTTGAGACCCTTGAATaGGTGCAGGGGGATGGTAGA +
Preference number: 4 (lower is better)
Translates to: IKGTGKMIGPAGVEWHRKVETLE*VQGDGR
Trigger: TCTACCATCCCCCTGCACGCATTCAAGGGTCTCAAC...CTTCCTGTGCCATTCCACCCCTGCTGGTCCTATCATTTTCCCAGTACCCTTTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR GCA 90 bp ATGCCTTGTTCAGCATCTGGGACTCTCCCTCACATACCTGTTCCTTACAGATGGAAAAGCAGCTTGAGCTaGTTGCTGTCAGCAAAAGCA +
Preference number: 4 (lower is better)
Translates to: MPCSASGTLPHIPVPYRWKSSLS*LLSAKA
Trigger: TGCTTTTGCTGACAGCAAGCAGCTCAAGCTGCTTTT...CCATCTGTAAGGAACAGGTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CCA 90 bp AAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGTCACACTTGGGGGCACGGATTTCTAGAATaGAGTTATCCTTCTTGGTCC +
Preference number: 4 (lower is better)
Translates to: KPGSFSPLENWDKGHTWGHGFLE*SYPSWS
Trigger: GGACCAAGAAGGATAACTCCATTCTAGAAATCCGTG...CCCCCAAGTGTGACCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CAA 72 bp GTGGTGTTCTGCAAAATCACCAACCCTCCCCAAACTTaGCTTTCTGTTTGGAAGGTCACTGTGGAGTTTCTC +
Preference number: 4 (lower is better)
Translates to: VVFCKITNPPQT*LSVWKVTVEFL
Trigger: GAGAAACTCCACAGTGACCTTCCAAACAGAAAGCAAAGTTTGGGGAGGGTTGGTGATTTTGCAGAACACCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
3UTR CAA 72 bp GTTTTAATCTCATGGCTCACCACACTGTGGTGTCAGTaGATAAATGATAACGACATTGATTCCACAGAGAGG +
Preference number: 4 (lower is better)
Translates to: VLISWLTTLWCQ*INDNDIDSTER
Trigger: CCTCTCTGTGGAATCAATGTCGTTATCATTTATCAACTGACACCACAGTGTGGTGAGCCATGAGATTAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 90 bp AGGGCCCTGGCACATGAGGCCCCGCACATTGACCACTGCAGCCCGTaGCCTCACCCAGTCCCTCAGCCACATGAGGTTACAGCCACAGAA +
Preference number: 5 (lower is better)
Translates to: RALAHEAPHIDHCSP*PHPVPQPHEVTATE
Trigger: TTCTGTGGCTGTAACCTCATGTGGCTGAGGGACTGGGTGAGGGCACGGGCTGCAGTGGTCAATGTGCGGGGCCTCATGTGCCAGGGCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 90 bp GCTTCTCCAGCAGCGGGATGCGAGCCAAAGAGTCCCTGGCGATGGTaGGCACATTGTTGTCCTGCAGATGCAGCTCTCTCAGGGAGCGGG +
Preference number: 5 (lower is better)
Translates to: ASPAAGCEPKSPWRW*AHCCPADAALSGSG
Trigger: CCCGCTCCCTGAGAGAGCTGCATCTGCAGGACAACAATGTGCGCACCATCGCCAGGGACTCTTTGGCTCGCATCCCGCTGCTGGAGAAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 90 bp GCATCCTCCTCGATGCTCACGGTGGAAACGGAGTTGTCGTCCAGGTaGAGCTTCTCCAGCAGCGGGATGCGAGCCAAAGAGTCCCTGGCG +
Preference number: 5 (lower is better)
Translates to: ASSSMLTVETELSSR*SFSSSGMRAKESLA
Trigger: CGCCAGGGACTCTTTGGCTCGCATCCCGCTGCTGGAGAAGCTGCACCTGGACGACAACTCCGTTTCCACCGTGAGCATCGAGGAGGATGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 90 bp GCCTTGAGGGTAAACAGAGAGCCCTGGGGTGTGGTGGCAGAGGCATaGTTGCTGACTGTGGTCTTGGCGGCTGCATTAGCAGCACCGCCC +
Preference number: 5 (lower is better)
Translates to: ALRVNREPWGVVAEA*LLTVVLAAALAAPP
Trigger: GGGCGGTGCTGCTAATGCAGCCGCCAAGACCACAGTCAGCAACCATGCCTCTGCCACCACACCCCAGGGCTCTCTGTTTACCCTCAAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 90 bp AGGCGCAGTCCTGGCCTCTTGGCCTTGAGGGTAAACAGAGAGCCCTaGGGTGTGGTGGCAGAGGCATGGTTGCTGACTGTGGTCTTGGCG +
Preference number: 5 (lower is better)
Translates to: RRSPGLLALRVNREP*GVVAEAWLLTVVLA
Trigger: CGCCAAGACCACAGTCAGCAACCATGCCTCTGCCACCACACCCCAGGGCTCTCTGTTTACCCTCAAGGCCAAGAGGCCAGGACTGCGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp GTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTCTTCCCTCCTTTCCGATGAGGCCCCGCACATaGACCACTGCAGCCCGTGCC +
Preference number: 5 (lower is better)
Translates to: VQDEADIRTPGTALPSFPMRPRT*TTAARA
Trigger: GGCACGGGCTGCAGTGGTCAATGTGCGGGGCCTCAT...CGGAAAGGAGGGAAGAGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 90 bp GCAGCTTCTCCAGCAGCGGGATGCGAGCCAAAGAGTCCCTGGCGATaGTGCGCACATTGTTGTCCTGCAGATGCAGCTCTCTCAGGGAGC +
Preference number: 5 (lower is better)
Translates to: AASPAAGCEPKSPWR*CAHCCPADAALSGS
Trigger: GCTCCCTGAGAGAGCTGCATCTGCAGGACAACAATGTGCGCACCATCGCCAGGGACTCTTTGGCTCGCATCCCGCTGCTGGAGAAGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 90 bp AGTTCCTCCAGCGTGTGGGGCAGCCCTGACGGGATGCTGCTCAGGTaGTTCCGGCTCAGGAAAAGCAGCTTGAGCTGCTTGCTGTCAGCA +
Preference number: 5 (lower is better)
Translates to: SSSSVWGSPDGMLLR*FRLRKSSLSCLLSA
Trigger: TGCTGACAGCAAGCAGCTCAAGCTGCTTTTCCTGAGCCGGAACCACCTGAGCAGCATCCCGTCAGGGCTGCCCCACACGCTGGAGGAACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 90 bp ATGGTAGAGATGCGGTTGTCATCTAGCCTCAGTTCCTCCAGCGTGTaGGGCAGCCCTGACGGGATGCTGCTCAGGTGGTTCCGGCTCAGG +
Preference number: 5 (lower is better)
Translates to: MVEMRLSSSLSSSSV*GSPDGMLLRWFRLR
Trigger: CCTGAGCCGGAACCACCTGAGCAGCATCCCGTCAGGGCTGCCCCACACGCTGGAGGAACTGAGGCTAGATGACAACCGCATCTCTACCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 90 bp TCTCTCGGGTCAGCAGCTCGCCAGCCCGGTGCACGTACCAGCAAATaGCTCCCAGGACCAGGAAGAGAAATACAAGAGCCACGGCACCAC +
Preference number: 5 (lower is better)
Translates to: SLGSAARQPGARTSK*LPGPGREIQEPRHH
Trigger: GTGGTGCCGTGGCTCTTGTATTTCTCTTCCTGGTCCTGGGAGCCATTTGCTGGTACGTGCACCGGGCTGGCGAGCTGCTGACCCGAGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp CGCAGCTCTGTCTACCCATCCGTACTGAGACACAGGACACGGCCATGGGTGGGCGCATTCTGTTCCTGGTaGAGCGTGGTGGTAGGGCCA +
Preference number: 5 (lower is better)
Translates to: RSSVYPSVLRHRTRPWVGAFCSW*SVVVGP
Trigger: TGGCCCTACCACCACGCTCAACCAGGAACAGAATGC...GCCCACCCATGGCCGTGTCCTGTGTCTCAGTACGGATGGGTAGACAGAGCTGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp ACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTATAGTGTGGGCACCCTaGCAGAGGCTGCTGCCATTG +
Preference number: 5 (lower is better)
Translates to: TRAPQVQDEADIRTPGTAIVWAP*QRLLPL
Trigger: CAATGGCAGCAGCCTCTGCAAGGGTGCCCACACTAT...AGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 90 bp TATCCTTCTTGGTCCCTGACTCCATGTAGTCGTCCTTCCTCCTGCTaGCCCTGTTGTAGACCCTCTCTCGGGTCAGCAGCTCGCCAGCCC +
Preference number: 5 (lower is better)
Translates to: YPSWSLTPCSRPSSC*PCCRPSLGSAARQP
Trigger: GGGCTGGCGAGCTGCTGACCCGAGAGAGGGTCTACAACAGGGGCAGCAGGAGGAAGGACGACTACATGGAGTCAGGGACCAAGAAGGATA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 90 bp CCAGGTGCAGCTTCTCCAGCAGCGGGATGCGAGCCAAAGAGTCCCTaGCGATGGTGCGCACATTGTTGTCCTGCAGATGCAGCTCTCTCA +
Preference number: 5 (lower is better)
Translates to: PGAASPAAGCEPKSP*RWCAHCCPADAALS
Trigger: TGAGAGAGCTGCATCTGCAGGACAACAATGTGCGCACCATCGCCAGGGACTCTTTGGCTCGCATCCCGCTGCTGGAGAAGCTGCACCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 90 bp AGTGGCCATGGGGTAGTCAATGTTGGAGTCTGGGAGGCGCAGTCCTaGCCTCTTGGCCTTGAGGGTAAACAGAGAGCCCTGGGGTGTGGT +
Preference number: 5 (lower is better)
Translates to: SGHGVVNVGVWEAQS*PLGLEGKQRALGCG
Trigger: ACCACACCCCAGGGCTCTCTGTTTACCCTCAAGGCCAAGAGGCCAGGACTGCGCCTCCCAGACTCCAACATTGACTACCCCATGGCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp GGCCAGCCACAGACTTCCCTATGGAAATGTCAGCTGCACACGGACAGCATCCCAAGGCGCCGCAGGCTGTaGAGACCCTTGAATGCGTGC +
Preference number: 5 (lower is better)
Translates to: GQPQTSLWKCQLHTDSIPRRRRL*RPLNAC
Trigger: GCACGCATTCAAGGGTCTCAACAGCCTGCGGCGCCT...TGGGATGCTGTCCGTGTGCAGCTGACATTTCCATAGGGAAGTCTGTGGCTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp ACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTACCACGTACTCCTCTTaGGAGCGGTACGGGTTGATG +
Preference number: 5 (lower is better)
Translates to: TRAPQVQDEADIRTPGTATTYSS*ERYGLM
Trigger: CATCAACCCGTACCGCTCCAAAGAGGAGTACGTGGT...AGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 90 bp GCCAAAGAGTCCCTGGCGATGGTGCGCACATTGTTGTCCTGCAGATaGAGCTCTCTCAGGGAGCGGGGGAGATTGATAGGGAACTCGTCC +
Preference number: 5 (lower is better)
Translates to: AKESLAMVRTLLSCR*SSLRERGRLIGNSS
Trigger: GGACGAGTTCCCTATCAATCTCCCCCGCTCCCTGAGAGAGCTGCATCTGCAGGACAACAATGTGCGCACCATCGCCAGGGACTCTTTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 90 bp CCATCCAGAACCAGGCGCCGCAGGCTGTTGAGACCCTTGAATGCGTaGAGGGGGATGGTAGAGATGCGGTTGTCATCTAGCCTCAGTTCC +
Preference number: 5 (lower is better)
Translates to: PSRTRRRRLLRPLNA*RGMVEMRLSSSLSS
Trigger: GGAACTGAGGCTAGATGACAACCGCATCTCTACCATCCCCCTGCACGCATTCAAGGGTCTCAACAGCCTGCGGCGCCTGGTTCTGGATGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp CACTGGGGACCACAGGGCTCCAGGGTGCATGTTTATACAGACCTGAATCTGGGGTCGCTGGTGATGTCTTaGATGGCCATGCCCCGGACC +
Preference number: 5 (lower is better)
Translates to: HWGPQGSRVHVYTDLNLGSLVMS*MAMPRT
Trigger: GGTCCGGGGCATGGCCATCAAAGACATCACCAGCGA...CCCCAGATTCAGGTCTGTATAAACATGCACCCTGGAGCCCTGTGGTCCCCAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS TCA 90 bp CTGACGGGATGCTGCTCAGGTGGTTCCGGCTCAGGAAAAGCAGCTTaGGCTGCTTGCTGTCAGCAAAAGCATCCTCCTCGATGCTCACGG +
Preference number: 5 (lower is better)
Translates to: LTGCCSGGSGSGKAA*AACCQQKHPPRCSR
Trigger: CCGTGAGCATCGAGGAGGATGCTTTTGCTGACAGCAAGCAGCTCAAGCTGCTTTTCCTGAGCCGGAACCACCTGAGCAGCATCCCGTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS TCA 90 bp GTTGCTGACTGTGGTCTTGGCGGCTGCATTAGCAGCACCGCCCTGTaGCCCCGCCTCAAAGCACTCATCCATCTCGCTGGTGATGTCTTT +
Preference number: 5 (lower is better)
Translates to: VADCGLGGCISSTAL*PRLKALIHLAGDVF
Trigger: AAAGACATCACCAGCGAGATGGATGAGTGCTTTGAGGCGGGGTCACAGGGCGGTGCTGCTAATGCAGCCGCCAAGACCACAGTCAGCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 90 bp TTCCTGGTTGAGCGTGGTGGTAGGGCCATAGCTATCTGCTGTCTCTaGCTTGGCACACACAGGTGTCTCATCGGCCACGTAGGTGTTGCC +
Preference number: 5 (lower is better)
Translates to: FLVERGGRAIAICCL*LGTHRCLIGHVGVA
Trigger: GGCAACACCTACGTGGCCGATGAGACACCTGTGTGTGCCAAGGCAGAGACAGCAGATAGCTATGGCCCTACCACCACGCTCAACCAGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 90 bp AGTTATCCTTCTTGGTCCCTGACTCCATGTAGTCGTCCTTCCTCCTaGTGCCCCTGTTGTAGACCCTCTCTCGGGTCAGCAGCTCGCCAG +
Preference number: 5 (lower is better)
Translates to: SYPSWSLTPCSRPSS*CPCCRPSLGSAARQ
Trigger: CTGGCGAGCTGCTGACCCGAGAGAGGGTCTACAACAGGGGCAGCAGGAGGAAGGACGACTACATGGAGTCAGGGACCAAGAAGGATAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp TTGACAGATGGTGACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACAGGGAGCGGGGGAGATaGATAGGGAACTCGTCCAGG +
Preference number: 5 (lower is better)
Translates to: LTDGDPGSPSTGRSRHQNRERGR*IGNSSR
Trigger: CCTGGACGAGTTCCCTATCAATCTCCCCCGCTCCCT...GTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGTCACCATCTGTCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp GTACAGGACGAAGCAGACATCAGAACCCCAGGCACCGCTCTTCCCTCCTTTCCGAGCGTGGTGAGGTTGTaGTTGGACAGGTCCAACCTC +
Preference number: 5 (lower is better)
Translates to: VQDEADIRTPGTALPSFPSVVRL*LDRSNL
Trigger: GAGGTTGGACCTGTCCAACAACAACCTCACCACGCT...CGGAAAGGAGGGAAGAGCGGTGCCTGGGGTTCTGATGTCTGCTTCGTCCTGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp AGCTTTTCTTGGTACCAGAAAGGGGAGTGGCCCGGCTCTGGGCTGGCTGACACACCACAGAACCAGGGGTaGTTCCTGAGAAGCAGCTGT +
Preference number: 5 (lower is better)
Translates to: SFSWYQKGEWPGSGLADTPQNQG*FLRSSC
Trigger: ACAGCTGCTTCTCAGGAACAACCCCTGGTTCTGTGG...TGTGTCAGCCAGCCCAGAGCCGGGCCACTCCCCTTTCTGGTACCAAGAAAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp TTGACAGATGGTGACCCGGGCTCCCCAAGTACAGGACGAAGCAGACATCAGAACCCTGGCCTCTTGGCCTaGAGGGTAAACAGAGAGCCC +
Preference number: 5 (lower is better)
Translates to: LTDGDPGSPSTGRSRHQNPGLLA*RVNREP
Trigger: GGGCTCTCTGTTTACCCTCAAGGCCAAGAGGCCAGG...GTTCTGATGTCTGCTTCGTCCTGTACTTGGGGAGCCCGGGTCACCATCTGTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp CCCAGGTGTTTCAAGCATTTGGCCACCAGACCCTTCCTGGAGCAGGAAACAAGGAGGCTGTTGAGACCCTaGAATGCGTGCAGGGGGATG +
Preference number: 5 (lower is better)
Translates to: PRCFKHLATRPFLEQETRRLLRP*NACRGM
Trigger: CATCCCCCTGCACGCATTCAAGGGTCTCAACAGCCT...CCTTGTTTCCTGCTCCAGGAAGGGTCTGGTGGCCAAATGCTTGAAACACCTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp CACTGGGGACCACAGGGCTCCAGGGTGCATGTTTATACAGACCTGAATCTGGGGTTGCTGACTGTGGTCTaGGCGGCTGCATTAGCAGCA +
Preference number: 5 (lower is better)
Translates to: HWGPQGSRVHVYTDLNLGLLTVV*AAALAA
Trigger: TGCTGCTAATGCAGCCGCCAAGACCACAGTCAGCAA...CCCCAGATTCAGGTCTGTATAAACATGCACCCTGGAGCCCTGTGGTCCCCAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp ACTATTGTGGGGACAGCATCTATTGGGGGAGGGACAGATGAGGGCACTGGTCATGTGGCAGAGGCATGGTaGCTGACTGTGGTCTTGGCG +
Preference number: 5 (lower is better)
Translates to: TIVGTASIGGGTDEGTGHVAEAW*LTVVLA
Trigger: CGCCAAGACCACAGTCAGCAACCATGCCTCTGCCAC...ATGACCAGTGCCCTCATCTGTCCCTCCCCCAATAGATGCTGTCCCCACAATAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp GGCCAGCCACAGACTTCCCTATGGAAATGTCAGCTGCACACGGACAGCATCCCACAGAGGCTGCTGCCATaGGAGGGAAATATGGTGTGC +
Preference number: 5 (lower is better)
Translates to: GQPQTSLWKCQLHTDSIPQRLLP*EGNMVC
Trigger: GCACACCATATTTCCCTCCAATGGCAGCAGCCTCTG...TGGGATGCTGTCCGTGTGCAGCTGACATTTCCATAGGGAAGTCTGTGGCTGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS TCA 90 bp TCCCCGGTCATTGCAGTAGATGAAGCCATTGTCACAGCGGCACACTaGTGGGCAGGTGGTGCTATCGATGACCTCCGTGAGGAAGGCAAT +
Preference number: 5 (lower is better)
Translates to: SPVIAVDEAIVTAAH*WAGGAIDDLREEGN
Trigger: ATTGCCTTCCTCACGGAGGTCATCGATAGCACCACCTGCCCATCAGTGTGCCGCTGTGACAATGGCTTCATCTACTGCAATGACCGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 90 bp CTCCATGGTGACCATACAGATGATGTAGGTGGACTTGGGCTCCAGTaGTGTCAGCAAGTACTCTGTCTTGTCCCCCTGCACCAGGGTCTC +
Preference number: 5 (lower is better)
Translates to: LHGDHTDDVGGLGLQ*CQQVLCLVPLHQGL
Trigger: GAGACCCTGGTGCAGGGGGACAAGACAGAGTACTTGCTGACAGCACTGGAGCCCAAGTCCACCTACATCATCTGTATGGTCACCATGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 90 bp AGCATTCTGTTCCTGGTTGAGCGTGGTGGTAGGGCCATAGCTATCTaGTGTCTCTGCCTTGGCACACACAGGTGTCTCATCGGCCACGTA +
Preference number: 5 (lower is better)
Translates to: SILFLVERGGRAIAI*CLCLGTHRCLIGHV
Trigger: TACGTGGCCGATGAGACACCTGTGTGTGCCAAGGCAGAGACAGCAGATAGCTATGGCCCTACCACCACGCTCAACCAGGAACAGAATGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp GGCCAGCCACAGACTTCCCTATGGAAATGTCAGCTGCACACGGACAGCATCCCAGGGATGCCCGCATTGTaGATCTGGTTGTTCTGTAGG +
Preference number: 5 (lower is better)
Translates to: GQPQTSLWKCQLHTDSIPGMPAL*IWLFCR
Trigger: CCTACAGAACAACCAGATCAACAATGCGGGCATCCC...TGGGATGCTGTCCGTGTGCAGCTGACATTTCCATAGGGAAGTCTGTGGCTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp ATAAAGGGTACTGGGAAAATGATAGGACCAGCAGGGGTGGAATGGCACAGGAAGTGGTTGGCCAGCAGGTaGCCATCCAGAACCAGGCGC +
Preference number: 5 (lower is better)
Translates to: IKGTGKMIGPAGVEWHRKWLASR*PSRTRR
Trigger: GCGCCTGGTTCTGGATGGCAACCTGCTGGCCAACCA...CTTCCTGTGCCATTCCACCCCTGCTGGTCCTATCATTTTCCCAGTACCCTTTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp ATTGTGAGGCCAGAAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGTCGGCAATGCGCTGGTaGGCCAGCAGGTTGCCATCC +
Preference number: 5 (lower is better)
Translates to: IVRPEARFLFSFGELGQRSAMRW*ASRLPS
Trigger: GGATGGCAACCTGCTGGCCAACCAGCGCATTGCCGA...CCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTTCTGGCCTCACAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp ACTATTGTGGGGACAGCATCTATTGGGGGAGGGACAGATGAGGGCACTGGTCATAGCAAGTACTCTGTCTaGTCCCCCTGCACCAGGGTC +
Preference number: 5 (lower is better)
Translates to: TIVGTASIGGGTDEGTGHSKYSV*SPCTRV
Trigger: GACCCTGGTGCAGGGGGACAAGACAGAGTACTTGCT...ATGACCAGTGCCCTCATCTGTCCCTCCCCCAATAGATGCTGTCCCCACAATAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp AAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGTCACACTTGGGGGGGCAGCGTGGTGAGGTaGTTGTTGGACAGGTCCAAC +
Preference number: 5 (lower is better)
Translates to: KPGSFSPLENWDKGHTWGGSVVR*LLDRSN
Trigger: GTTGGACCTGTCCAACAACAACCTCACCACGCTGCC...CCCCCAAGTGTGACCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTT
54% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS TCA 90 bp GAAATATGGTGTGCACCACGTACTCCTCTTTGGAGCGGTACGGGTTaGTGGGTAGCATCTGCAGTCCTGGGCCACGGATTTCTAGAATGG +
Preference number: 5 (lower is better)
Translates to: EIWCAPRTPLWSGTG*WVASAVLGHGFLEW
Trigger: CCATTCTAGAAATCCGTGGCCCAGGACTGCAGATGCTACCCATCAACCCGTACCGCTCCAAAGAGGAGTACGTGGTGCACACCATATTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp ATGCCTTGTTCAGCATCTGGGACTCTCCCTCACATACCTGTTCCTTACAGATGGGCGATGGTGCGCACATaGTTGTCCTGCAGATGCAGC +
Preference number: 5 (lower is better)
Translates to: MPCSASGTLPHIPVPYRWAMVRT*LSCRCS
Trigger: GCTGCATCTGCAGGACAACAATGTGCGCACCATCGC...CCATCTGTAAGGAACAGGTATGTGAGGGAGAGTCCCAGATGCTGAACAAGGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp ATAAAGGGTACTGGGAAAATGATAGGACCAGCAGGGGTGGAATGGCACAGGAAGCGCAGTCCTGGCCTCTaGGCCTTGAGGGTAAACAGA +
Preference number: 5 (lower is better)
Translates to: IKGTGKMIGPAGVEWHRKRSPGL*ALRVNR
Trigger: TCTGTTTACCCTCAAGGCCAAGAGGCCAGGACTGCG...CTTCCTGTGCCATTCCACCCCTGCTGGTCCTATCATTTTCCCAGTACCCTTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 90 bp ACCACGTACTCCTCTTTGGAGCGGTACGGGTTGATGGGTAGCATCTaGAGTCCTGGGCCACGGATTTCTAGAATGGAGTTATCCTTCTTG +
Preference number: 5 (lower is better)
Translates to: TTYSSLERYGLMGSI*SPGPRISRMELSFL
Trigger: CAAGAAGGATAACTCCATTCTAGAAATCCGTGGCCCAGGACTGCAGATGCTACCCATCAACCCGTACCGCTCCAAAGAGGAGTACGTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp AAGCCAGGTTCCTTTTCTCCTTTGGAGAACTGGGACAAAGGTCACACTTGGGGGAGCAGCTTGAGCTGCTaGCTGTCAGCAAAAGCATCC +
Preference number: 5 (lower is better)
Translates to: KPGSFSPLENWDKGHTWGSSLSC*LSAKAS
Trigger: GGATGCTTTTGCTGACAGCAAGCAGCTCAAGCTGCT...CCCCCAAGTGTGACCTTTGTCCCAGTTCTCCAAAGGAGAAAAGGAACCTGGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp ATTCCACAGAGAGGGAATAAAATCTTAGCTCTTCTGAGGGCCCGGTCAGTACCCGTGGTGAGGTTGTTGTaGGACAGGTCCAACCTCTCC +
Preference number: 5 (lower is better)
Translates to: IPQRGNKILALLRARSVPVVRLL*DRSNLS
Trigger: GGAGAGGTTGGACCTGTCCAACAACAACCTCACCAC...GGGTACTGACCGGGCCCTCAGAAGAGCTAAGATTTTATTCCCTCTCTGTGGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp ATTCCACAGAGAGGGAATAAAATCTTAGCTCTTCTGAGGGCCCGGTCAGTACCCTTGGAGCGGTACGGGTaGATGGGTAGCATCTGCAGT +
Preference number: 5 (lower is better)
Translates to: IPQRGNKILALLRARSVPLERYG*MGSICS
Trigger: ACTGCAGATGCTACCCATCAACCCGTACCGCTCCAA...GGGTACTGACCGGGCCCTCAGAAGAGCTAAGATTTTATTCCCTCTCTGTGGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp ATTCCACAGAGAGGGAATAAAATCTTAGCTCTTCTGAGGGCCCGGTCAGTACCCATGGTGCGCACATTGTaGTCCTGCAGATGCAGCTCT +
Preference number: 5 (lower is better)
Translates to: IPQRGNKILALLRARSVPMVRTL*SCRCSS
Trigger: AGAGCTGCATCTGCAGGACAACAATGTGCGCACCAT...GGGTACTGACCGGGCCCTCAGAAGAGCTAAGATTTTATTCCCTCTCTGTGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS-3UTR CAA 90 bp ATTCCACAGAGAGGGAATAAAATCTTAGCTCTTCTGAGGGCCCGGTCAGTACCCCTCAGGAAAAGCAGCTaGAGCTGCTTGCTGTCAGCA +
Preference number: 5 (lower is better)
Translates to: IPQRGNKILALLRARSVPLRKSS*SCLLSA
Trigger: TGCTGACAGCAAGCAGCTCAAGCTGCTTTTCCTGAG...GGGTACTGACCGGGCCCTCAGAAGAGCTAAGATTTTATTCCCTCTCTGTGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 90 bp GAGCCCTGGGGTGTGGTGGCAGAGGCATGGTTGCTGACTGTGGTCTaGGCGGCTGCATTAGCAGCACCGCCCTGTGACCCCGCCTCAAAG +
Preference number: 6 (lower is better)
Translates to: EPWGVVAEAWLLTVV*AAALAAPPCDPASK
Trigger: CTTTGAGGCGGGGTCACAGGGCGGTGCTGCTAATGCAGCCGCCAAGACCACAGTCAGCAACCATGCCTCTGCCACCACACCCCAGGGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 72 bp TGGCGCCATCGCCAGTGGCCATGGGGTAGTCAATGTTaGAGTCTGGGAGGCGCAGTCCTGGCCTCTTGGCCT +
Preference number: 6 (lower is better)
Translates to: WRHRQWPWGSQC*SLGGAVLASWP
Trigger: AGGCCAAGAGGCCAGGACTGCGCCTCCCAGACTCCAACATTGACTACCCCATGGCCACTGGCGATGGCGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp GGTGTGGTGGCAGAGGCATGGTTGCTGACTGTGGTCTaGGCGGCTGCATTAGCAGCACCGCCCTGTGACCCC +
Preference number: 6 (lower is better)
Translates to: GVVAEAWLLTVV*AAALAAPPCDP
Trigger: GGGGTCACAGGGCGGTGCTGCTAATGCAGCCGCCAAGACCACAGTCAGCAACCATGCCTCTGCCACCACACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 72 bp GCACATGAGGCCCCGCACATTGACCACTGCAGCCCGTaGCCTCACCCAGTCCCTCAGCCACATGAGGTTACA +
Preference number: 6 (lower is better)
Translates to: AHEAPHIDHCSP*PHPVPQPHEVT
Trigger: TGTAACCTCATGTGGCTGAGGGACTGGGTGAGGGCACGGGCTGCAGTGGTCAATGTGCGGGGCCTCATGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 72 bp AGCGTGTGGGGCAGCCCTGACGGGATGCTGCTCAGGTaGTTCCGGCTCAGGAAAAGCAGCTTGAGCTGCTTG +
Preference number: 6 (lower is better)
Translates to: SVWGSPDGMLLR*FRLRKSSLSCL
Trigger: CAAGCAGCTCAAGCTGCTTTTCCTGAGCCGGAACCACCTGAGCAGCATCCCGTCAGGGCTGCCCCACACGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp AAGGTGTCGTCGGCAATGCGCTGGTTGGCCAGCAGGTaGCCATCCAGAACCAGGCGCCGCAGGCTGTTGAGA +
Preference number: 6 (lower is better)
Translates to: KVSSAMRWLASR*PSRTRRRRLLR
Trigger: TCTCAACAGCCTGCGGCGCCTGGTTCTGGATGGCAACCTGCTGGCCAACCAGCGCATTGCCGACGACACCTT
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 90 bp AGCAGCGGGATGCGAGCCAAAGAGTCCCTGGCGATGGTGCGCACATaGTTGTCCTGCAGATGCAGCTCTCTCAGGGAGCGGGGGAGATTG +
Preference number: 6 (lower is better)
Translates to: SSGMRAKESLAMVRT*LSCRCSSLRERGRL
Trigger: CAATCTCCCCCGCTCCCTGAGAGAGCTGCATCTGCAGGACAACAATGTGCGCACCATCGCCAGGGACTCTTTGGCTCGCATCCCGCTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 90 bp TGGTTGGCCAGCAGGTTGCCATCCAGAACCAGGCGCCGCAGGCTGTaGAGACCCTTGAATGCGTGCAGGGGGATGGTAGAGATGCGGTTG +
Preference number: 6 (lower is better)
Translates to: WLASRLPSRTRRRRL*RPLNACRGMVEMRL
Trigger: CAACCGCATCTCTACCATCCCCCTGCACGCATTCAAGGGTCTCAACAGCCTGCGGCGCCTGGTTCTGGATGGCAACCTGCTGGCCAACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 72 bp AGTTGTCGTCCAGGTGCAGCTTCTCCAGCAGCGGGATaGGAGCCAAAGAGTCCCTGGCGATGGTGCGCACAT +
Preference number: 6 (lower is better)
Translates to: SCRPGAASPAAG*EPKSPWRWCAH
Trigger: ATGTGCGCACCATCGCCAGGGACTCTTTGGCTCGCATCCCGCTGCTGGAGAAGCTGCACCTGGACGACAACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 72 bp CCAGCAGCGGGATGCGAGCCAAAGAGTCCCTGGCGATaGTGCGCACATTGTTGTCCTGCAGATGCAGCTCTC +
Preference number: 6 (lower is better)
Translates to: PAAGCEPKSPWR*CAHCCPADAAL
Trigger: GAGAGCTGCATCTGCAGGACAACAATGTGCGCACCATCGCCAGGGACTCTTTGGCTCGCATCCCGCTGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp CCATCCAGAACCAGGCGCCGCAGGCTGTTGAGACCCTaGAATGCGTGCAGGGGGATGGTAGAGATGCGGTTG +
Preference number: 6 (lower is better)
Translates to: PSRTRRRRLLRP*NACRGMVEMRL
Trigger: CAACCGCATCTCTACCATCCCCCTGCACGCATTCAAGGGTCTCAACAGCCTGCGGCGCCTGGTTCTGGATGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp AGCAGGTTGCCATCCAGAACCAGGCGCCGCAGGCTGTaGAGACCCTTGAATGCGTGCAGGGGGATGGTAGAG +
Preference number: 6 (lower is better)
Translates to: SRLPSRTRRRRL*RPLNACRGMVE
Trigger: CTCTACCATCCCCCTGCACGCATTCAAGGGTCTCAACAGCCTGCGGCGCCTGGTTCTGGATGGCAACCTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 90 bp TTGAGGGTAAACAGAGAGCCCTGGGGTGTGGTGGCAGAGGCATGGTaGCTGACTGTGGTCTTGGCGGCTGCATTAGCAGCACCGCCCTGT +
Preference number: 6 (lower is better)
Translates to: LRVNREPWGVVAEAW*LTVVLAAALAAPPC
Trigger: ACAGGGCGGTGCTGCTAATGCAGCCGCCAAGACCACAGTCAGCAACCATGCCTCTGCCACCACACCCCAGGGCTCTCTGTTTACCCTCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 72 bp TCCCTGGCGATGGTGCGCACATTGTTGTCCTGCAGATaGAGCTCTCTCAGGGAGCGGGGGAGATTGATAGGG +
Preference number: 6 (lower is better)
Translates to: SLAMVRTLLSCR*SSLRERGRLIG
Trigger: CCCTATCAATCTCCCCCGCTCCCTGAGAGAGCTGCATCTGCAGGACAACAATGTGCGCACCATCGCCAGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 72 bp TCGATGCTCACGGTGGAAACGGAGTTGTCGTCCAGGTaGAGCTTCTCCAGCAGCGGGATGCGAGCCAAAGAG +
Preference number: 6 (lower is better)
Translates to: SMLTVETELSSR*SFSSSGMRAKE
Trigger: CTCTTTGGCTCGCATCCCGCTGCTGGAGAAGCTGCACCTGGACGACAACTCCGTTTCCACCGTGAGCATCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 72 bp ACCAGGCGCCGCAGGCTGTTGAGACCCTTGAATGCGTaGAGGGGGATGGTAGAGATGCGGTTGTCATCTAGC +
Preference number: 6 (lower is better)
Translates to: TRRRRLLRPLNA*RGMVEMRLSSS
Trigger: GCTAGATGACAACCGCATCTCTACCATCCCCCTGCACGCATTCAAGGGTCTCAACAGCCTGCGGCGCCTGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 72 bp CAGAACCAGGCGCCGCAGGCTGTTGAGACCCTTGAATaGGTGCAGGGGGATGGTAGAGATGCGGTTGTCATC +
Preference number: 6 (lower is better)
Translates to: QNQAPQAVETLE*VQGDGRDAVVI
Trigger: GATGACAACCGCATCTCTACCATCCCCCTGCACGCATTCAAGGGTCTCAACAGCCTGCGGCGCCTGGTTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 72 bp TGGTCCCTGACTCCATGTAGTCGTCCTTCCTCCTGCTaGCCCTGTTGTAGACCCTCTCTCGGGTCAGCAGCT +
Preference number: 6 (lower is better)
Translates to: WSLTPCSRPSSC*PCCRPSLGSAA
Trigger: AGCTGCTGACCCGAGAGAGGGTCTACAACAGGGGCAGCAGGAGGAAGGACGACTACATGGAGTCAGGGACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 72 bp GCTTCTCCAGCAGCGGGATGCGAGCCAAAGAGTCCCTaGCGATGGTGCGCACATTGTTGTCCTGCAGATGCA +
Preference number: 6 (lower is better)
Translates to: ASPAAGCEPKSP*RWCAHCCPADA
Trigger: TGCATCTGCAGGACAACAATGTGCGCACCATCGCCAGGGACTCTTTGGCTCGCATCCCGCTGCTGGAGAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 72 bp GGGGTAGTCAATGTTGGAGTCTGGGAGGCGCAGTCCTaGCCTCTTGGCCTTGAGGGTAAACAGAGAGCCCTG +
Preference number: 6 (lower is better)
Translates to: GVVNVGVWEAQS*PLGLEGKQRAL
Trigger: CAGGGCTCTCTGTTTACCCTCAAGGCCAAGAGGCCAGGACTGCGCCTCCCAGACTCCAACATTGACTACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp ATGCGAGCCAAAGAGTCCCTGGCGATGGTGCGCACATaGTTGTCCTGCAGATGCAGCTCTCTCAGGGAGCGG +
Preference number: 6 (lower is better)
Translates to: MRAKESLAMVRT*LSCRCSSLRER
Trigger: CCGCTCCCTGAGAGAGCTGCATCTGCAGGACAACAATGTGCGCACCATCGCCAGGGACTCTTTGGCTCGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp CCCTTGAATGCGTGCAGGGGGATGGTAGAGATGCGGTaGTCATCTAGCCTCAGTTCCTCCAGCGTGTGGGGC +
Preference number: 6 (lower is better)
Translates to: PLNACRGMVEMR*SSSLSSSSVWG
Trigger: GCCCCACACGCTGGAGGAACTGAGGCTAGATGACAACCGCATCTCTACCATCCCCCTGCACGCATTCAAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp TCAAACAGGCCCCGAGGCAGCGTGGTGAGGTTGTTGTaGGACAGGTCCAACCTCTCCAGCTCCCGCATCTTG +
Preference number: 6 (lower is better)
Translates to: SNRPRGSVVRLL*DRSNLSSSRIL
Trigger: CAAGATGCGGGAGCTGGAGAGGTTGGACCTGTCCAACAACAACCTCACCACGCTGCCTCGGGGCCTGTTTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp TCATCAAACAGGCCCCGAGGCAGCGTGGTGAGGTTGTaGTTGGACAGGTCCAACCTCTCCAGCTCCCGCATC +
Preference number: 6 (lower is better)
Translates to: SSNRPRGSVVRL*LDRSNLSSSRI
Trigger: GATGCGGGAGCTGGAGAGGTTGGACCTGTCCAACAACAACCTCACCACGCTGCCTCGGGGCCTGTTTGATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp GCCTCAAAGCACTCATCCATCTCGCTGGTGATGTCTTaGATGGCCATGCCCCGGACCTTCTCAGGGCCCTGG +
Preference number: 6 (lower is better)
Translates to: ASKHSSISLVMS*MAMPRTFSGPW
Trigger: CCAGGGCCCTGAGAAGGTCCGGGGCATGGCCATCAAAGACATCACCAGCGAGATGGATGAGTGCTTTGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp AACAGAGAGCCCTGGGGTGTGGTGGCAGAGGCATGGTaGCTGACTGTGGTCTTGGCGGCTGCATTAGCAGCA +
Preference number: 6 (lower is better)
Translates to: NREPWGVVAEAW*LTVVLAAALAA
Trigger: TGCTGCTAATGCAGCCGCCAAGACCACAGTCAGCAACCATGCCTCTGCCACCACACCCCAGGGCTCTCTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 90 bp AGCGGGATGCGAGCCAAAGAGTCCCTGGCGATGGTGCGCACATTGTaGTCCTGCAGATGCAGCTCTCTCAGGGAGCGGGGGAGATTGATA +
Preference number: 6 (lower is better)
Translates to: SGMRAKESLAMVRTL*SCRCSSLRERGRLI
Trigger: TATCAATCTCCCCCGCTCCCTGAGAGAGCTGCATCTGCAGGACAACAATGTGCGCACCATCGCCAGGGACTCTTTGGCTCGCATCCCGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 90 bp CTGTTGAGACCCTTGAATGCGTGCAGGGGGATGGTAGAGATGCGGTaGTCATCTAGCCTCAGTTCCTCCAGCGTGTGGGGCAGCCCTGAC +
Preference number: 6 (lower is better)
Translates to: LLRPLNACRGMVEMR*SSSLSSSSVWGSPD
Trigger: GTCAGGGCTGCCCCACACGCTGGAGGAACTGAGGCTAGATGACAACCGCATCTCTACCATCCCCCTGCACGCATTCAAGGGTCTCAACAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 72 bp GAGCGTGGTGGTAGGGCCATAGCTATCTGCTGTCTCTaGCTTGGCACACACAGGTGTCTCATCGGCCACGTA +
Preference number: 6 (lower is better)
Translates to: ERGGRAIAICCL*LGTHRCLIGHV
Trigger: TACGTGGCCGATGAGACACCTGTGTGTGCCAAGGCAGAGACAGCAGATAGCTATGGCCCTACCACCACGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 72 bp TCTTGGTCCCTGACTCCATGTAGTCGTCCTTCCTCCTaGTGCCCCTGTTGTAGACCCTCTCTCGGGTCAGCA +
Preference number: 6 (lower is better)
Translates to: SWSLTPCSRPSS*CPCCRPSLGSA
Trigger: TGCTGACCCGAGAGAGGGTCTACAACAGGGGCAGCAGGAGGAAGGACGACTACATGGAGTCAGGGACCAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 72 bp GTGATTCGGATAGAGTCTGCCGTCAGTGGCTTCACCTaGATGACCAATGTCTTGGCGCCATCGCCAGTGGCC +
Preference number: 6 (lower is better)
Translates to: VIRIESAVSGFT*MTNVLAPSPVA
Trigger: GGCCACTGGCGATGGCGCCAAGACATTGGTCATCCAGGTGAAGCCACTGACGGCAGACTCTATCCGAATCAC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 72 bp TCAGCAGCTCGCCAGCCCGGTGCACGTACCAGCAAATaGCTCCCAGGACCAGGAAGAGAAATACAAGAGCCA +
Preference number: 6 (lower is better)
Translates to: SAARQPGARTSK*LPGPGREIQEP
Trigger: TGGCTCTTGTATTTCTCTTCCTGGTCCTGGGAGCCATTTGCTGGTACGTGCACCGGGCTGGCGAGCTGCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp CTCAGCCACATGAGGTTACAGCCACAGAACCAGGGGTaGTTCCTGAGAAGCAGCTGTGCCAGGTTCCCCAGG +
Preference number: 6 (lower is better)
Translates to: LSHMRLQPQNQG*FLRSSCARFPR
Trigger: CCTGGGGAACCTGGCACAGCTGCTTCTCAGGAACAACCCCTGGTTCTGTGGCTGTAACCTCATGTGGCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp GTGTGCACCACGTACTCCTCTTTGGAGCGGTACGGGTaGATGGGTAGCATCTGCAGTCCTGGGCCACGGATT +
Preference number: 6 (lower is better)
Translates to: VCTTYSSLERYG*MGSICSPGPRI
Trigger: AATCCGTGGCCCAGGACTGCAGATGCTACCCATCAACCCGTACCGCTCCAAAGAGGAGTACGTGGTGCACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 90 bp ACCCAGTCCCTCAGCCACATGAGGTTACAGCCACAGAACCAGGGGTaGTTCCTGAGAAGCAGCTGTGCCAGGTTCCCCAGGTCATCAAAC +
Preference number: 6 (lower is better)
Translates to: TQSLSHMRLQPQNQG*FLRSSCARFPRSSN
Trigger: GTTTGATGACCTGGGGAACCTGGCACAGCTGCTTCTCAGGAACAACCCCTGGTTCTGTGGCTGTAACCTCATGTGGCTGAGGGACTGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 90 bp CTGCTGCCATTGGAGGGAAATATGGTGTGCACCACGTACTCCTCTTaGGAGCGGTACGGGTTGATGGGTAGCATCTGCAGTCCTGGGCCA +
Preference number: 6 (lower is better)
Translates to: LLPLEGNMVCTTYSS*ERYGLMGSICSPGP
Trigger: TGGCCCAGGACTGCAGATGCTACCCATCAACCCGTACCGCTCCAAAGAGGAGTACGTGGTGCACACCATATTTCCCTCCAATGGCAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS TCA 72 bp TGTGCACCACGTACTCCTCTTTGGAGCGGTACGGGTTaGTGGGTAGCATCTGCAGTCCTGGGCCACGGATTT +
Preference number: 6 (lower is better)
Translates to: CAPRTPLWSGTG*WVASAVLGHGF
Trigger: AAATCCGTGGCCCAGGACTGCAGATGCTACCCATCAACCCGTACCGCTCCAAAGAGGAGTACGTGGTGCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS TCA 72 bp TGCTGCTCAGGTGGTTCCGGCTCAGGAAAAGCAGCTTaGGCTGCTTGCTGTCAGCAAAAGCATCCTCCTCGA +
Preference number: 6 (lower is better)
Translates to: CCSGGSGSGKAA*AACCQQKHPPR
Trigger: TCGAGGAGGATGCTTTTGCTGACAGCAAGCAGCTCAAGCTGCTTTTCCTGAGCCGGAACCACCTGAGCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 72 bp TTCCTGGTTGAGCGTGGTGGTAGGGCCATAGCTATCTaGTGTCTCTGCCTTGGCACACACAGGTGTCTCATC +
Preference number: 6 (lower is better)
Translates to: FLVERGGRAIAI*CLCLGTHRCLI
Trigger: GATGAGACACCTGTGTGTGCCAAGGCAGAGACAGCAGATAGCTATGGCCCTACCACCACGCTCAACCAGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CCA 72 bp GGCCTTCCATGTGATTCGGATAGAGTCTGCCGTCAGTaGCTTCACCTGGATGACCAATGTCTTGGCGCCATC +
Preference number: 6 (lower is better)
Translates to: GLPCDSDRVCRQ*LHLDDQCLGAI
Trigger: GATGGCGCCAAGACATTGGTCATCCAGGTGAAGCCACTGACGGCAGACTCTATCCGAATCACATGGAAGGCC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp TCCTGCAGATGCAGCTCTCTCAGGGAGCGGGGGAGATaGATAGGGAACTCGTCCAGGTCATTCTCATACAGG +
Preference number: 6 (lower is better)
Translates to: SCRCSSLRERGR*IGNSSRSFSYR
Trigger: CCTGTATGAGAATGACCTGGACGAGTTCCCTATCAATCTCCCCCGCTCCCTGAGAGAGCTGCATCTGCAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp AGGTGGTTCCGGCTCAGGAAAAGCAGCTTGAGCTGCTaGCTGTCAGCAAAAGCATCCTCCTCGATGCTCACG +
Preference number: 6 (lower is better)
Translates to: RWFRLRKSSLSC*LSAKASSSMLT
Trigger: CGTGAGCATCGAGGAGGATGCTTTTGCTGACAGCAAGCAGCTCAAGCTGCTTTTCCTGAGCCGGAACCACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS TCA 72 bp ATTGCAGTAGATGAAGCCATTGTCACAGCGGCACACTaGTGGGCAGGTGGTGCTATCGATGACCTCCGTGAG +
Preference number: 6 (lower is better)
Translates to: IAVDEAIVTAAH*WAGGAIDDLRE
Trigger: CTCACGGAGGTCATCGATAGCACCACCTGCCCATCAGTGTGCCGCTGTGACAATGGCTTCATCTACTGCAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 72 bp GACCATACAGATGATGTAGGTGGACTTGGGCTCCAGTaGTGTCAGCAAGTACTCTGTCTTGTCCCCCTGCAC +
Preference number: 6 (lower is better)
Translates to: DHTDDVGGLGLQ*CQQVLCLVPLH
Trigger: GTGCAGGGGGACAAGACAGAGTACTTGCTGACAGCACTGGAGCCCAAGTCCACCTACATCATCTGTATGGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 90 bp GGAAATATGGTGTGCACCACGTACTCCTCTTTGGAGCGGTACGGGTaGATGGGTAGCATCTGCAGTCCTGGGCCACGGATTTCTAGAATG +
Preference number: 6 (lower is better)
Translates to: GNMVCTTYSSLERYG*MGSICSPGPRISRM
Trigger: CATTCTAGAAATCCGTGGCCCAGGACTGCAGATGCTACCCATCAACCCGTACCGCTCCAAAGAGGAGTACGTGGTGCACACCATATTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS GCA 72 bp TCCTCTTTGGAGCGGTACGGGTTGATGGGTAGCATCTaGAGTCCTGGGCCACGGATTTCTAGAATGGAGTTA +
Preference number: 6 (lower is better)
Translates to: SSLERYGLMGSI*SPGPRISRMEL
Trigger: TAACTCCATTCTAGAAATCCGTGGCCCAGGACTGCAGATGCTACCCATCAACCCGTACCGCTCCAAAGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4
CDS CAA 72 bp TTGGAGGGAAATATGGTGTGCACCACGTACTCCTCTTaGGAGCGGTACGGGTTGATGGGTAGCATCTGCAGT +
Preference number: 6 (lower is better)
Translates to: LEGNMVCTTYSS*ERYGLMGSICS
Trigger: ACTGCAGATGCTACCCATCAACCCGTACCGCTCCAAAGAGGAGTACGTGGTGCACACCATATTTCCCTCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113383.4