Pregenerated sensors for FBXO2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041556Ensembl transcript IDs: ENSMUST00000047951.9
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATCCTACAGTAAAGCAACATGTCCTTCTTTCCTCGGGACCAGACTaGAGGAAGGGGCGGGAGAGAGGCAGGTGCAAGGCGTGGGCGAGG | + |
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Preference number: 1 (lower is better) Translates to: HPTVKQHVLLSSGPD*RKGRERGRCKAWAR Trigger: CCTCGCCCACGCCTTGCACCTGCCTCTCTCCCGCCCCTTCCTTCAGTCTGGTCCCGAGGAAAGAAGGACATGTTGCTTTACTGTAGGATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| 3UTR-3UTR TCA 90 bp | ACAATGCTAGGAGCGCGGGATCCAGCAGCAGCCCCATACCCCCTCGGATCGTACTCCTCGGGACCAGACTaGAGGAAGGGGCGGGAGAGA | + |
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Preference number: 2 (lower is better) Translates to: TMLGARDPAAAPYPLGSYSSGPD*RKGRER Trigger: TCTCTCCCGCCCCTTCCTTCAGTCTGGTCCCGAGGA...GTACGATCCGAGGGGGTATGGGGCTGCTGCTGGATCCCGCGCTCCTAGCATTGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| 3UTR-3UTR TCA 90 bp | CACAATGCTAGGAGCGCGGGATCCAGCAGCAGCCCCATACCCCCTCGGATCGTACGTGGGCGAGGCAGGTaGGGATGCTACCAACTAAAT | + |
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Preference number: 2 (lower is better) Translates to: HNARSAGSSSSPIPPRIVRGRGR*GCYQLN Trigger: ATTTAGTTGGTAGCATCCTCACCTGCCTCGCCCACG...TACGATCCGAGGGGGTATGGGGCTGCTGCTGGATCCCGCGCTCCTAGCATTGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| 3UTR TCA 72 bp | GTACATTCTAGAAGCGACTGCCCGTGGAGATGCAAATaGAAGCCATCCTACAGTAAAGCAACATGTCCTTCT | + |
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Preference number: 3 (lower is better) Translates to: VHSRSDCPWRCK*KPSYSKATCPS Trigger: AGAAGGACATGTTGCTTTACTGTAGGATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTCTAGAATGTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR GCA 90 bp | ACAATGCTAGGAGCGCGGGATCCAGCAGCAGCCCCATACCCCCTCGGATCGTACACCAGGCGGCAGGCCTaGACCAGCTCCGTAGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: TMLGARDPAAAPYPLGSYTRRQA*TSSVAG Trigger: GCCAGCTACGGAGCTGGTGCAGGCCTGCCGCCTGGT...GTACGATCCGAGGGGGTATGGGGCTGCTGCTGGATCCCGCGCTCCTAGCATTGT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR GCA 90 bp | AGCGCGGGATCCAGCAGCAGCCCCATACCCCCTCGGATCGTACATTCTAGAAGCCAGCCGTCCCCACCGTaGTCCACGTCGCTCCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: SAGSSSSPIPPRIVHSRSQPSPP*STSLQP Trigger: GGGCTGGAGCGACGTGGAGCACGGTGGGGACGGCTG...GCTTCTAGAATGTACGATCCGAGGGGGTATGGGGCTGCTGCTGGATCCCGCGCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR TCA 90 bp | CGGGATCCAGCAGCAGCCCCATACCCCCTCGGATCGTACATTCTAGAAGCGACTCCTCCTGCTGGCACTTaGGCAGCCACAGTGGGGCGC | + |
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Preference number: 4 (lower is better) Translates to: RDPAAAPYPLGSYILEATPPAGT*AATVGR Trigger: GCGCCCCACTGTGGCTGCTCAAGTGCCAGCAGGAGG...AGTCGCTTCTAGAATGTACGATCCGAGGGGGTATGGGGCTGCTGCTGGATCCCG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CCA 90 bp | GGAGCGCGGGATCCAGCAGCAGCCCCATACCCCCTCGGATCGTACATTCTAGAAACCACGATGGCGGGCTaGGTGGTGTCCAGTAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: GARDPAAAPYPLGSYILETTMAG*VVSSSS Trigger: GGAGCTACTGGACACCACCCAGCCCGCCATCGTGGT...TTCTAGAATGTACGATCCGAGGGGGTATGGGGCTGCTGCTGGATCCCGCGCTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR GCA 90 bp | CGGGATCCAGCAGCAGCCCCATACCCCCTCGGATCGTACATTCTAGAAGCGACTGAGTCCTGCCCTCCGTaGTCGAAGCGGACAAAGCGG | + |
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Preference number: 4 (lower is better) Translates to: RDPAAAPYPLGSYILEATESCPP*SKRTKR Trigger: CCGCTTTGTCCGCTTCGAGCACGGAGGGCAGGACTC...AGTCGCTTCTAGAATGTACGATCCGAGGGGGTATGGGGCTGCTGCTGGATCCCG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CCA 90 bp | GGAGCGCGGGATCCAGCAGCAGCCCCATACCCCCTCGGATCGTACATTCTAGAAACCAGCCCCTCCTGCTaGCACTTGAGCAGCCACAGT | + |
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Preference number: 4 (lower is better) Translates to: GARDPAAAPYPLGSYILETSPSC*HLSSHS Trigger: ACTGTGGCTGCTCAAGTGCCAGCAGGAGGGGCTGGT...TTCTAGAATGTACGATCCGAGGGGGTATGGGGCTGCTGCTGGATCCCGCGCTCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR TCA 90 bp | AGCGCGGGATCCAGCAGCAGCCCCATACCCCCTCGGATCGTACATTCTAGAAGCCTGCCTGCAGATCAATaGCCTGCGCTTTGCGACACC | + |
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Preference number: 4 (lower is better) Translates to: SAGSSSSPIPPRIVHSRSLPADQ*PALCDT Trigger: GGTGTCGCAAAGCGCAGGTCATTGATCTGCAGGCAG...GCTTCTAGAATGTACGATCCGAGGGGGTATGGGGCTGCTGCTGGATCCCGCGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CCA 90 bp | CTCGGATCGTACATTCTAGAAGCGACTGCCCGTGGAGATGCAAATGAAAGCCATGGCGCCCGCCTCCTCTaGCTGCTCCTCTGGGCTCGC | + |
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Preference number: 4 (lower is better) Translates to: LGSYILEATARGDANESHGARLL*LLLWAR Trigger: GCGAGCCCAGAGGAGCAGCCAGAGGAGGCGGGCGCC...ATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTCTAGAATGTACGATCCGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR GCA 90 bp | CTCGGATCGTACATTCTAGAAGCGACTGCCCGTGGAGATGCAAATGAAAGCCATTCCGCCTCCCGGAGCTaGTCCTCCTCCGCACTCGCC | + |
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Preference number: 4 (lower is better) Translates to: LGSYILEATARGDANESHSASRS*SSSALA Trigger: GGCGAGTGCGGAGGAGGAGCAGCTCCGGGAGGCGGA...ATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTCTAGAATGTACGATCCGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR GCA 90 bp | AGCGCGGGATCCAGCAGCAGCCCCATACCCCCTCGGATCGTACATTCTAGAAGCCTCCCAGTAGCCCTCTaGCTGCAGATCAATGACCTG | + |
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Preference number: 4 (lower is better) Translates to: SAGSSSSPIPPRIVHSRSLPVAL*LQINDL Trigger: CAGGTCATTGATCTGCAGGCAGAGGGCTACTGGGAG...GCTTCTAGAATGTACGATCCGAGGGGGTATGGGGCTGCTGCTGGATCCCGCGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CCA 90 bp | AAGGCGTGGGCGAGGCAGGTGAGGATGCTACCAACTAAATTAAGGCCTTTCTACCTCTGGCTGCTCCTCTaGGCTCGCTTCTTCGGGGTG | + |
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Preference number: 4 (lower is better) Translates to: KAWARQVRMLPTKLRPFYLWLLL*ARFFGV Trigger: CACCCCGAAGAAGCGAGCCCAGAGGAGCAGCCAGAG...GTAGAAAGGCCTTAATTTAGTTGGTAGCATCCTCACCTGCCTCGCCCACGCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR GCA 90 bp | ATTCTAGAAGCGACTGCCCGTGGAGATGCAAATGAAAGCCATCCTACAGTAAAGGCTCCTCATCAGCGCTaGCCTCGGGCACCAGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: ILEATARGDANESHPTVKAPHQR*PRAPAP Trigger: AGGGGCTGGTGCCCGAGGGCAGCGCTGATGAGGAGC...CTTTACTGTAGGATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTCTAGAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR GCA 90 bp | GGAGCGCGGGATCCAGCAGCAGCCCCATACCCCCTCGGATCGTACATTCTAGAAGGTTGCGCCTCCTCTTaGTCAGAAAGTAGAACTGTT | + |
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Preference number: 4 (lower is better) Translates to: GARDPAAAPYPLGSYILEGCASS*SESRTV Trigger: AACAGTTCTACTTTCTGAGCAAGAGGAGGCGCAACC...TTCTAGAATGTACGATCCGAGGGGGTATGGGGCTGCTGCTGGATCCCGCGCTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CCA 90 bp | AAGGCGTGGGCGAGGCAGGTGAGGATGCTACCAACTAAATTAAGGCCTTTCTACCCAACTGCCGTCCTCTaGCACAGCCACCTGTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: KAWARQVRMLPTKLRPFYPTAVL*HSHLSC Trigger: ACAGGACAGGTGGCTGTGCCAGAGGACGGCAGTTGG...GTAGAAAGGCCTTAATTTAGTTGGTAGCATCCTCACCTGCCTCGCCCACGCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR GCA 90 bp | ATTCTAGAAGCGACTGCCCGTGGAGATGCAAATGAAAGCCATCCTACAGTAAAGGGCACCAGCCCCTCCTaGTGGCACTTGAGCAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: ILEATARGDANESHPTVKGTSPS*WHLSSH Trigger: GTGGCTGCTCAAGTGCCAGCAGGAGGGGCTGGTGCC...CTTTACTGTAGGATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTCTAGAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CCA 90 bp | CTCGGATCGTACATTCTAGAAGCGACTGCCCGTGGAGATGCAAATGAAAGCCATAGTCCTTCACCACGATaGCGGGCTGGGTGGTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: LGSYILEATARGDANESHSPSPR*RAGWCP Trigger: TGGACACCACCCAGCCCGCCATCGTGGTGAAGGACT...ATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTCTAGAATGTACGATCCGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR TCA 90 bp | GAAGCGACTGCCCGTGGAGATGCAAATGAAAGCCATCCTACAGTAAAGCAACATCTGGCCCGTAGTCGATaGAGGTGTGGGAGATCTCCA | + |
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Preference number: 4 (lower is better) Translates to: EATARGDANESHPTVKQHLARSR*RCGRSP Trigger: TGGAGATCTCCCACACCTTCATCGACTACGGGCCAG...ATGTTGCTTTACTGTAGGATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CCA 90 bp | CTCGGATCGTACATTCTAGAAGCGACTGCCCGTGGAGATGCAAATGAAAGCCATCTCGCTTCTTCGGGGTaGCTCACACTCTCTGGATCA | + |
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Preference number: 4 (lower is better) Translates to: LGSYILEATARGDANESHLASSG*LTLSGS Trigger: TGATCCAGAGAGTGTGAGCCACCCCGAAGAAGCGAG...ATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTCTAGAATGTACGATCCGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CCA 90 bp | GAAGCGACTGCCCGTGGAGATGCAAATGAAAGCCATCCTACAGTAAAGCAACATGACAAAGCGGACACCTaGCCCGTAGTCGATGAAGGT | + |
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Preference number: 4 (lower is better) Translates to: EATARGDANESHPTVKQHDKADT*PVVDEG Trigger: ACCTTCATCGACTACGGGCCAGGTGTCCGCTTTGTC...ATGTTGCTTTACTGTAGGATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CCA 90 bp | CTCGGATCGTACATTCTAGAAGCGACTGCCCGTGGAGATGCAAATGAAAGCCATGTGGCTCACACTCTCTaGATCACCATCTCCATCCAT | + |
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Preference number: 4 (lower is better) Translates to: LGSYILEATARGDANESHVAHTL*ITISIH Trigger: ATGGATGGAGATGGTGATCCAGAGAGTGTGAGCCAC...ATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTCTAGAATGTACGATCCGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR GCA 90 bp | ATTCTAGAAGCGACTGCCCGTGGAGATGCAAATGAAAGCCATCCTACAGTAAAGTGCAGATCAATGACCTaGGCTTTGCGACACCACTCG | + |
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Preference number: 4 (lower is better) Translates to: ILEATARGDANESHPTVKCRSMT*ALRHHS Trigger: CGAGTGGTGTCGCAAAGCGCAGGTCATTGATCTGCA...CTTTACTGTAGGATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTCTAGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS CCA 90 bp | CCAGCGCAGGCACACCAGGCGGCAGGCCTGCACCAGCTCCGTAGCTaGCAGCTCGGCCAGCACGCGCAGCAGCAGTGGCTCCGGCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: PAQAHQAAGLHQLRS*QLGQHAQQQWLRQL Trigger: GAGCTGCCGGAGCCACTGCTGCTGCGCGTGCTGGCCGAGCTGCCAGCTACGGAGCTGGTGCAGGCCTGCCGCCTGGTGTGCCTGCGCTGG 73% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS GCA 90 bp | CCGTCCACCAGCTCCTTCCAGCGCAGGCACACCAGGCGGCAGGCCTaGACCAGCTCCGTAGCTGGCAGCTCGGCCAGCACGCGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: PSTSSFQRRHTRRQA*TSSVAGSSASTRSS Trigger: GCTGCTGCGCGTGCTGGCCGAGCTGCCAGCTACGGAGCTGGTGCAGGCCTGCCGCCTGGTGTGCCTGCGCTGGAAGGAGCTGGTGGACGG 72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS CCA 90 bp | GCCCTCGGGCACCAGCCCCTCCTGCTGGCACTTGAGCAGCCACAGTaGGGCGCCGTCCACCAGCTCCTTCCAGCGCAGGCACACCAGGCG | + |
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Preference number: 5 (lower is better) Translates to: ALGHQPLLLALEQPQ*GAVHQLLPAQAHQA Trigger: CGCCTGGTGTGCCTGCGCTGGAAGGAGCTGGTGGACGGCGCCCCACTGTGGCTGCTCAAGTGCCAGCAGGAGGGGCTGGTGCCCGAGGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS CCA 90 bp | CACCAGCTCCGTAGCTGGCAGCTCGGCCAGCACGCGCAGCAGCAGTaGCTCCGGCAGCTCGGCCAGGTACTCCACGGCCTCCGCCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: HQLRSWQLGQHAQQQ*LRQLGQVLHGLRLF Trigger: GAAGAGGCGGAGGCCGTGGAGTACCTGGCCGAGCTGCCGGAGCCACTGCTGCTGCGCGTGCTGGCCGAGCTGCCAGCTACGGAGCTGGTG 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS TCA 90 bp | CCTCATCAGCGCTGCCCTCGGGCACCAGCCCCTCCTGCTGGCACTTaGGCAGCCACAGTGGGGCGCCGTCCACCAGCTCCTTCCAGCGCA | + |
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Preference number: 5 (lower is better) Translates to: PHQRCPRAPAPPAGT*AATVGRRPPAPSSA Trigger: TGCGCTGGAAGGAGCTGGTGGACGGCGCCCCACTGTGGCTGCTCAAGTGCCAGCAGGAGGGGCTGGTGCCCGAGGGCAGCGCTGATGAGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS CCA 90 bp | CTCCTCCGCACTCGCCTCGGCGCCCGCCTCCTCTGGCTGCTCCTCTaGGCTCGCTTCTTCGGGGTGGCTCACACTCTCTGGATCACCATC | + |
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Preference number: 5 (lower is better) Translates to: LLRTRLGARLLWLLL*ARFFGVAHTLWITI Trigger: GATGGTGATCCAGAGAGTGTGAGCCACCCCGAAGAAGCGAGCCCAGAGGAGCAGCCAGAGGAGGCGGGCGCCGAGGCGAGTGCGGAGGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CAA 90 bp | ACAATGCTAGGAGCGCGGGATCCAGCAGCAGCCCCATACCCCCTCGGATCGTACGGGTTGCGCAGCAGGTaGCGCCTCCTCTTGCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: TMLGARDPAAAPYPLGSYGLRSR*RLLLLR Trigger: TCTGAGCAAGAGGAGGCGCAACCTGCTGCGCAACCC...GTACGATCCGAGGGGGTATGGGGCTGCTGCTGGATCCCGCGCTCCTAGCATTGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS CCA 90 bp | GACCGAGTCCTGCCCTCCGTGCTCGAAGCGGACAAAGCGGACACCTaGCCCGTAGTCGATGAAGGTGTGGGAGATCTCCATCCAACTGCC | + |
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Preference number: 5 (lower is better) Translates to: DRVLPSVLEADKADT*PVVDEGVGDLHPTA Trigger: GGCAGTTGGATGGAGATCTCCCACACCTTCATCGACTACGGGCCAGGTGTCCGCTTTGTCCGCTTCGAGCACGGAGGGCAGGACTCGGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS TCA 90 bp | CTCCGTGCTCGAAGCGGACAAAGCGGACACCTGGCCCGTAGTCGATaGAGGTGTGGGAGATCTCCATCCAACTGCCGTCCTCTGGCACAG | + |
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Preference number: 5 (lower is better) Translates to: LRARSGQSGHLARSR*RCGRSPSNCRPLAQ Trigger: CTGTGCCAGAGGACGGCAGTTGGATGGAGATCTCCCACACCTTCATCGACTACGGGCCAGGTGTCCGCTTTGTCCGCTTCGAGCACGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CAA 90 bp | GGAGCGCGGGATCCAGCAGCAGCCCCATACCCCCTCGGATCGTACATTCTAGAATCAATGACCTGCGCTTaGCGACACCACTCGAAGGAG | + |
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Preference number: 5 (lower is better) Translates to: GARDPAAAPYPLGSYILESMTCA*RHHSKE Trigger: CTCCTTCGAGTGGTGTCGCAAAGCGCAGGTCATTGA...TTCTAGAATGTACGATCCGAGGGGGTATGGGGCTGCTGCTGGATCCCGCGCTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS GCA 90 bp | AGTCCTCTTCCCCACAAGGGTTGCGCAGCAGGTTGCGCCTCCTCTTaGTCAGAAAGTAGAACTGTTGCCAGTGGTCCCGCTCCTCATCAG | + |
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Preference number: 5 (lower is better) Translates to: SPLPHKGCAAGCASS*SESRTVASGPAPHQ Trigger: CTGATGAGGAGCGGGACCACTGGCAACAGTTCTACTTTCTGAGCAAGAGGAGGCGCAACCTGCTGCGCAACCCTTGTGGGGAAGAGGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS CCA 90 bp | GTAGTCGATGAAGGTGTGGGAGATCTCCATCCAACTGCCGTCCTCTaGCACAGCCACCTGTCCTGTAGCGAACTCCGCCAGCACATCTTC | + |
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Preference number: 5 (lower is better) Translates to: VVDEGVGDLHPTAVL*HSHLSCSELRQHIF Trigger: GAAGATGTGCTGGCGGAGTTCGCTACAGGACAGGTGGCTGTGCCAGAGGACGGCAGTTGGATGGAGATCTCCCACACCTTCATCGACTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CAA 90 bp | GAAGCGACTGCCCGTGGAGATGCAAATGAAAGCCATCCTACAGTAAAGCAACATCCCTCCTGCTGGCACTaGAGCAGCCACAGTGGGGCG | + |
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Preference number: 5 (lower is better) Translates to: EATARGDANESHPTVKQHPSCWH*SSHSGA Trigger: CGCCCCACTGTGGCTGCTCAAGTGCCAGCAGGAGGG...ATGTTGCTTTACTGTAGGATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CAA 90 bp | CTCGGATCGTACATTCTAGAAGCGACTGCCCGTGGAGATGCAAATGAAAGCCATGTAAATTCCACCCCATaGTCTCCGGGCAGTTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: LGSYILEATARGDANESHVNSTP*SPGSSS Trigger: GGAGGAACTGCCCGGAGACAATGGGGTGGAATTTAC...ATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTCTAGAATGTACGATCCGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CAA 90 bp | GAAGCGACTGCCCGTGGAGATGCAAATGAAAGCCATCCTACAGTAAAGCAACATCAGAAAGTAGAACTGTaGCCAGTGGTCCCGCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: EATARGDANESHPTVKQHQKVEL*PVVPLL Trigger: GAGGAGCGGGACCACTGGCAACAGTTCTACTTTCTG...ATGTTGCTTTACTGTAGGATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS-3UTR CAA 90 bp | CTCGGATCGTACATTCTAGAAGCGACTGCCCGTGGAGATGCAAATGAAAGCCATCTTAACGCTGTCATCTaGGGTAAATTCCACCCCATT | + |
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Preference number: 5 (lower is better) Translates to: LGSYILEATARGDANESHLNAVI*GKFHPI Trigger: AATGGGGTGGAATTTACCCAAGATGACAGCGTTAAG...ATGGCTTTCATTTGCATCTCCACGGGCAGTCGCTTCTAGAATGTACGATCCGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS CCA 72 bp | GCACACCAGGCGGCAGGCCTGCACCAGCTCCGTAGCTaGCAGCTCGGCCAGCACGCGCAGCAGCAGTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: AHQAAGLHQLRS*QLGQHAQQQWL Trigger: GAGCCACTGCTGCTGCGCGTGCTGGCCGAGCTGCCAGCTACGGAGCTGGTGCAGGCCTGCCGCCTGGTGTGC 72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS GCA 72 bp | TCCTCCGCACTCGCCTCGGCGCCCGCCTCCTCTGGCTaGTCCTCTGGGCTCGCTTCTTCGGGGTGGCTCACA | + |
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Preference number: 6 (lower is better) Translates to: SSALASAPASSG*SSGLASSGWLT Trigger: TGTGAGCCACCCCGAAGAAGCGAGCCCAGAGGAGCAGCCAGAGGAGGCGGGCGCCGAGGCGAGTGCGGAGGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS GCA 72 bp | AGCTCCTTCCAGCGCAGGCACACCAGGCGGCAGGCCTaGACCAGCTCCGTAGCTGGCAGCTCGGCCAGCACG | + |
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Preference number: 6 (lower is better) Translates to: SSFQRRHTRRQA*TSSVAGSSAST Trigger: CGTGCTGGCCGAGCTGCCAGCTACGGAGCTGGTGCAGGCCTGCCGCCTGGTGTGCCTGCGCTGGAAGGAGCT 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS CAA 90 bp | TCCTCATCAGCGCTGCCCTCGGGCACCAGCCCCTCCTGCTGGCACTaGAGCAGCCACAGTGGGGCGCCGTCCACCAGCTCCTTCCAGCGC | + |
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Preference number: 6 (lower is better) Translates to: SSSALPSGTSPSCWH*SSHSGAPSTSSFQR Trigger: GCGCTGGAAGGAGCTGGTGGACGGCGCCCCACTGTGGCTGCTCAAGTGCCAGCAGGAGGGGCTGGTGCCCGAGGGCAGCGCTGATGAGGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS CCA 72 bp | ACTCGCCTCGGCGCCCGCCTCCTCTGGCTGCTCCTCTaGGCTCGCTTCTTCGGGGTGGCTCACACTCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: TRLGARLLWLLL*ARFFGVAHTLW Trigger: CCAGAGAGTGTGAGCCACCCCGAAGAAGCGAGCCCAGAGGAGCAGCCAGAGGAGGCGGGCGCCGAGGCGAGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS CAA 90 bp | GTTGCGCAGCAGGTTGCGCCTCCTCTTGCTCAGAAAGTAGAACTGTaGCCAGTGGTCCCGCTCCTCATCAGCGCTGCCCTCGGGCACCAG | + |
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Preference number: 6 (lower is better) Translates to: VAQQVAPPLAQKVEL*PVVPLLISAALGHQ Trigger: CTGGTGCCCGAGGGCAGCGCTGATGAGGAGCGGGACCACTGGCAACAGTTCTACTTTCTGAGCAAGAGGAGGCGCAACCTGCTGCGCAAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS CCA 72 bp | CTGCCCTCCGTGCTCGAAGCGGACAAAGCGGACACCTaGCCCGTAGTCGATGAAGGTGTGGGAGATCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: LPSVLEADKADT*PVVDEGVGDLH Trigger: ATGGAGATCTCCCACACCTTCATCGACTACGGGCCAGGTGTCCGCTTTGTCCGCTTCGAGCACGGAGGGCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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| CDS TCA 72 bp | CGAAGCGGACAAAGCGGACACCTGGCCCGTAGTCGATaGAGGTGTGGGAGATCTCCATCCAACTGCCGTCCT | + |
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Preference number: 6 (lower is better) Translates to: RSGQSGHLARSR*RCGRSPSNCRP Trigger: AGGACGGCAGTTGGATGGAGATCTCCCACACCTTCATCGACTACGGGCCAGGTGTCCGCTTTGTCCGCTTCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047951.9 |
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