Pregenerated sensors for FAM180A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047420Ensembl transcript IDs: ENSMUST00000051176.9
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCAAGTCAAGTAGGTCACCAAAATACAGAGTCTTCTTCATGGCTTTaGGGCAAGCCAAGTATATCCTTCTTGGCTAATAGCATATTAATT | + |
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Preference number: 1 (lower is better) Translates to: PSQVGHQNTESSSWL*GKPSISFLANSILI Trigger: AATTAATATGCTATTAGCCAAGAAGGATATACTTGGCTTGCCCCAAAGCCATGAAGAAGACTCTGTATTTTGGTGACCTACTTGACTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| 3UTR-3UTR TCA 90 bp | AGGAATCTGCCCACCATCCTCCTGCCATGCTCAGACTCCATCCTCAGTCCCTACCCTCTGGAGGCATCTTaGAAGTCCAGTCTAGCCTTT | + |
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Preference number: 2 (lower is better) Translates to: RNLPTILLPCSDSILSPYPLEAS*KSSLAF Trigger: AAAGGCTAGACTGGACTTTCAAGATGCCTCCAGAGG...GTAGGGACTGAGGATGGAGTCTGAGCATGGCAGGAGGATGGTGGGCAGATTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| 3UTR CAA 90 bp | CACCATCCTCCTGCCATGCTCAGACTCCATCCTCAGTCCCTACTCTaGGGTATGTGTGTAAGTATATCTCAGAAGTCTGCTCATTACCAG | + |
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Preference number: 2 (lower is better) Translates to: HHPPAMLRLHPQSLL*GMCVSISQKSAHYQ Trigger: CTGGTAATGAGCAGACTTCTGAGATATACTTACACACATACCCAAGAGTAGGGACTGAGGATGGAGTCTGAGCATGGCAGGAGGATGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| 3UTR-3UTR GCA 90 bp | TCCTGCCATGCTCAGACTCCATCCTCAGTCCCTACTCTTGGGTATGTGTGTAAGCTAGAAGACTGTGTGTaGCTGTTCCTGCTTCAAAGT | + |
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Preference number: 2 (lower is better) Translates to: SCHAQTPSSVPTLGYVCKLEDCV*LFLLQS Trigger: ACTTTGAAGCAGGAACAGGCACACACAGTCTTCTAG...CTTACACACATACCCAAGAGTAGGGACTGAGGATGGAGTCTGAGCATGGCAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| 3UTR-3UTR GCA 90 bp | TCTTCTTCATGGCTTTGGGGCAAGCCAAGTATATCCTTCTTGGCTAATAGCATAACCATCCTCCTGCCATaGTCAGACTCCATCCTCAGT | + |
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Preference number: 2 (lower is better) Translates to: SSSWLWGKPSISFLANSITILLP*SDSILS Trigger: ACTGAGGATGGAGTCTGAGCATGGCAGGAGGATGGT...TATGCTATTAGCCAAGAAGGATATACTTGGCTTGCCCCAAAGCCATGAAGAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| 3UTR-3UTR CCA 90 bp | AAGTCGCTGACAGTGCTATGGTATTTTAGGAAAAACACGCATAGTGGTGTTACCCTTTGCTATTCTGTGTaGGAAGTATATACTTTTCTC | + |
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Preference number: 2 (lower is better) Translates to: KSLTVLWYFRKNTHSGVTLCYSV*EVYTFL Trigger: GAGAAAAGTATATACTTCCCACACAGAATAGCAAAG...GGTAACACCACTATGCGTGTTTTTCCTAAAATACCATAGCACTGTCAGCGACTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| 3UTR GCA 72 bp | TCCCTTAGAACCAAAGGAATCTGCCCACCATCCTCCTaGCATGCTCAGACTCCATCCTCAGTCCCTACTCTT | + |
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Preference number: 3 (lower is better) Translates to: SLRTKGICPPSS*HAQTPSSVPTL Trigger: AAGAGTAGGGACTGAGGATGGAGTCTGAGCATGGCAGGAGGATGGTGGGCAGATTCCTTTGGTTCTAAGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| 3UTR GCA 72 bp | TTCATTCAACACAGATCCCTTAGAACCAAAGGAATCTaGCCACCATCCTCCTGCCATGCTCAGACTCCATCC | + |
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Preference number: 3 (lower is better) Translates to: FIQHRSLRTKGI*PPSSCHAQTPS Trigger: GGATGGAGTCTGAGCATGGCAGGAGGATGGTGGGCAGATTCCTTTGGTTCTAAGGGATCTGTGTTGAATGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| 3UTR GCA 72 bp | ACTCTTGGGTATGTGTGTAAGTATATCTCAGAAGTCTaGTCATTACCAGGTAGACCAGTTGGCCTCTGGAGG | + |
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Preference number: 3 (lower is better) Translates to: TLGYVCKYISEV*SLPGRPVGLWR Trigger: CCTCCAGAGGCCAACTGGTCTACCTGGTAATGAGCAGACTTCTGAGATATACTTACACACATACCCAAGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| 3UTR-3UTR CAA 90 bp | TACATTGAAATGATAGGGCATGGGTGGACTGCTAGCATTTCCACCAAGTCAAGTCCTCAGTCCCTACTCTaGGGTATGTGTGTAAGTATA | + |
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Preference number: 3 (lower is better) Translates to: YIEMIGHGWTASISTKSSPQSLL*GMCVSI Trigger: TATACTTACACACATACCCAAGAGTAGGGACTGAGG...ACTTGACTTGGTGGAAATGCTAGCAGTCCACCCATGCCCTATCATTTCAATGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| 3UTR CCA 72 bp | GTAGGTCACCAAAATACAGAGTCTTCTTCATGGCTTTaGGGCAAGCCAAGTATATCCTTCTTGGCTAATAGC | + |
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Preference number: 3 (lower is better) Translates to: VGHQNTESSSWL*GKPSISFLANS Trigger: GCTATTAGCCAAGAAGGATATACTTGGCTTGCCCCAAAGCCATGAAGAAGACTCTGTATTTTGGTGACCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR CCA 90 bp | CACAGATCCCTTAGAACCAAAGGAATCTGCCCACCATCCTCCTGCCATGCTCAGTGGCCGATGGGCAGCTaGGAACAGTGCGGCCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: HRSLRTKGICPPSSCHAQWPMGS*EQCGPA Trigger: AGCAGGGCCGCACTGTTCCCAGCTGCCCATCGGCCA...CTGAGCATGGCAGGAGGATGGTGGGCAGATTCCTTTGGTTCTAAGGGATCTGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR TCA 90 bp | AGGAATCTGCCCACCATCCTCCTGCCATGCTCAGACTCCATCCTCAGTCCCTACTGGATTCAATGGCAGTaGCAAGGACCTCTTTGGCCG | + |
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Preference number: 4 (lower is better) Translates to: RNLPTILLPCSDSILSPYWIQWQ*QGPLWP Trigger: CGGCCAAAGAGGTCCTTGTCACTGCCATTGAATCCA...GTAGGGACTGAGGATGGAGTCTGAGCATGGCAGGAGGATGGTGGGCAGATTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR CCA 90 bp | CCCTTAGAACCAAAGGAATCTGCCCACCATCCTCCTGCCATGCTCAGACTCCATACCTGCAGGACGCAGTaGCCTGGGTGCTGGAGAATA | + |
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Preference number: 4 (lower is better) Translates to: PLEPKESAHHPPAMLRLHTCRTQ*PGCWRI Trigger: TATTCTCCAGCACCCAGGCCACTGCGTCCTGCAGGT...ATGGAGTCTGAGCATGGCAGGAGGATGGTGGGCAGATTCCTTTGGTTCTAAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR CCA 90 bp | CCCTTAGAACCAAAGGAATCTGCCCACCATCCTCCTGCCATGCTCAGACTCCATCAGTGGCCTGGGTGCTaGAGAATACCAGCAGAATCG | + |
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Preference number: 4 (lower is better) Translates to: PLEPKESAHHPPAMLRLHQWPGC*RIPAES Trigger: CGATTCTGCTGGTATTCTCCAGCACCCAGGCCACTG...ATGGAGTCTGAGCATGGCAGGAGGATGGTGGGCAGATTCCTTTGGTTCTAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR GCA 90 bp | TACATTGAAATGATAGGGCATGGGTGGACTGCTAGCATTTCCACCAAGTCAAGTGGCAGCTGGGAACAGTaGGGCCCTGCTCCACCTGCA | + |
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Preference number: 4 (lower is better) Translates to: YIEMIGHGWTASISTKSSGSWEQ*GPAPPA Trigger: TGCAGGTGGAGCAGGGCCGCACTGTTCCCAGCTGCC...ACTTGACTTGGTGGAAATGCTAGCAGTCCACCCATGCCCTATCATTTCAATGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR CCA 90 bp | CACAGATCCCTTAGAACCAAAGGAATCTGCCCACCATCCTCCTGCCATGCTCAGTTATTGCAGATTGAGTaGAAACTCAAGGCCTTCCGC | + |
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Preference number: 4 (lower is better) Translates to: HRSLRTKGICPPSSCHAQLLQIE*KLKAFR Trigger: GCGGAAGGCCTTGAGTTTCCACTCAATCTGCAATAA...CTGAGCATGGCAGGAGGATGGTGGGCAGATTCCTTTGGTTCTAAGGGATCTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR GCA 90 bp | TACATTGAAATGATAGGGCATGGGTGGACTGCTAGCATTTCCACCAAGTCAAGTACGCAGTGGCCTGGGTaGTGGAGAATACCAGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: YIEMIGHGWTASISTKSSTQWPG*WRIPAE Trigger: TTCTGCTGGTATTCTCCAGCACCCAGGCCACTGCGT...ACTTGACTTGGTGGAAATGCTAGCAGTCCACCCATGCCCTATCATTTCAATGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR GCA 90 bp | ACCAAGTCAAGTAGGTCACCAAAATACAGAGTCTTCTTCATGGCTTTGGGGCAAGACCGCATCAAGTCATaGCTCAGGGCCTGGAATAGG | + |
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Preference number: 4 (lower is better) Translates to: TKSSRSPKYRVFFMALGQDRIKS*LRAWNR Trigger: CCTATTCCAGGCCCTGAGGCATGACTTGATGCGGTC...TTGCCCCAAAGCCATGAAGAAGACTCTGTATTTTGGTGACCTACTTGACTTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR CCA 90 bp | ACTCTTGGGTATGTGTGTAAGTATATCTCAGAAGTCTGCTCATTACCAGGTAGAGACCTCTTTGGCCGATaGGCAGCTGGGAACAGTGCG | + |
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Preference number: 4 (lower is better) Translates to: TLGYVCKYISEVCSLPGRDLFGR*AAGNSA Trigger: CGCACTGTTCCCAGCTGCCCATCGGCCAAAGAGGTC...TCTACCTGGTAATGAGCAGACTTCTGAGATATACTTACACACATACCCAAGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| 3UTR CAA 72 bp | CCTGCCATGCTCAGACTCCATCCTCAGTCCCTACTCTaGGGTATGTGTGTAAGTATATCTCAGAAGTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: PAMLRLHPQSLL*GMCVSISQKSA Trigger: AGCAGACTTCTGAGATATACTTACACACATACCCAAGAGTAGGGACTGAGGATGGAGTCTGAGCATGGCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR TCA 90 bp | AGGATGAAAGTTCTAGAAGACTGTGTGTGCCTGTTCCTGCTTCAAAGTTCTAGCGCCCAGATGTCCTTCTaGTGCCCTTCAGATAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: RMKVLEDCVCLFLLQSSSAQMSF*CPSDKA Trigger: AGCCTTATCTGAAGGGCATCAGAAGGACATCTGGGC...GCTAGAACTTTGAAGCAGGAACAGGCACACACAGTCTTCTAGAACTTTCATCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR GCA 90 bp | TCTTCTTCATGGCTTTGGGGCAAGCCAAGTATATCCTTCTTGGCTAATAGCATATCCTCCAGGGAGGTCTaGAGGACTGGATTCAATGGC | + |
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Preference number: 4 (lower is better) Translates to: SSSWLWGKPSISFLANSISSREV*RTGFNG Trigger: GCCATTGAATCCAGTCCTGCAGACCTCCCTGGAGGA...TATGCTATTAGCCAAGAAGGATATACTTGGCTTGCCCCAAAGCCATGAAGAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR GCA 90 bp | TCTTCTTCATGGCTTTGGGGCAAGCCAAGTATATCCTTCTTGGCTAATAGCATAGATTCCAGGGTGGTTTaGCAGGTTGGCACTCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: SSSWLWGKPSISFLANSIDSRVV*QVGTQP Trigger: AGGCTGAGTGCCAACCTGGCAAACCACCCTGGAATC...TATGCTATTAGCCAAGAAGGATATACTTGGCTTGCCCCAAAGCCATGAAGAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR TCA 90 bp | ACCTGCCAGAAAATATTCATTCAACACAGATCCCTTAGAACCAAAGGAATCTGCCTAGCTCCTCGTCCTTaGTGGAGATCTCCAGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: TCQKIFIQHRSLRTKGICLAPRP*WRSPGL Trigger: CAGACCTGGAGATCTCCATCAAGGACGAGGAGCTAG...GCAGATTCCTTTGGTTCTAAGGGATCTGTGTTGAATGAATATTTTCTGGCAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR GCA 90 bp | TCCTGCCATGCTCAGACTCCATCCTCAGTCCCTACTCTTGGGTATGTGTGTAAGTGGGGATTATGTTATTaGAGATTGAGTGGAAACTCA | + |
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Preference number: 4 (lower is better) Translates to: SCHAQTPSSVPTLGYVCKWGLCY*RLSGNS Trigger: TGAGTTTCCACTCAATCTGCAATAACATAATCCCCA...CTTACACACATACCCAAGAGTAGGGACTGAGGATGGAGTCTGAGCATGGCAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR TCA 90 bp | AGGATGAAAGTTCTAGAAGACTGTGTGTGCCTGTTCCTGCTTCAAAGTTCTAGCCAAAGTCTTCTTTCTTaGGGATTCCAGGGTGGTTTG | + |
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Preference number: 4 (lower is better) Translates to: RMKVLEDCVCLFLLQSSSQSLLS*GFQGGL Trigger: CAAACCACCCTGGAATCCTCAAGAAAGAAGACTTTG...GCTAGAACTTTGAAGCAGGAACAGGCACACACAGTCTTCTAGAACTTTCATCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR CCA 90 bp | ACTCTTGGGTATGTGTGTAAGTATATCTCAGAAGTCTGCTCATTACCAGGTAGAGGAGATCTCCAGGTCTaGGCTGATCTCAATTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: TLGYVCKYISEVCSLPGRGDLQV*ADLNFS Trigger: GCTGAAATTGAGATCAGCCCAGACCTGGAGATCTCC...TCTACCTGGTAATGAGCAGACTTCTGAGATATACTTACACACATACCCAAGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR TCA 90 bp | GCAGTAGAGGATGAAAGTTCTAGAAGACTGTGTGTGCCTGTTCCTGCTTCAAAGTATGTTATTGCAGATTaGGTGGAAACTCAAGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: AVEDESSRRLCVPVPASKYVIAD*VETQGL Trigger: AAGGCCTTGAGTTTCCACTCAATCTGCAATAACATA...CTTTGAAGCAGGAACAGGCACACACAGTCTTCTAGAACTTTCATCCTCTACTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS CCA 90 bp | GGGCAGCTGGGAACAGTGCGGCCCTGCTCCACCTGCAGGACGCAGTaGCCTGGGTGCTGGAGAATACCAGCAGAATCGTCAGCGCCTTCC | + |
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Preference number: 5 (lower is better) Translates to: GQLGTVRPCSTCRTQ*PGCWRIPAESSAPS Trigger: GGAAGGCGCTGACGATTCTGCTGGTATTCTCCAGCACCCAGGCCACTGCGTCCTGCAGGTGGAGCAGGGCCGCACTGTTCCCAGCTGCCC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS CCA 90 bp | GCTGGGAACAGTGCGGCCCTGCTCCACCTGCAGGACGCAGTGGCCTaGGTGCTGGAGAATACCAGCAGAATCGTCAGCGCCTTCCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: AGNSAALLHLQDAVA*VLENTSRIVSAFQD Trigger: GTCCTGGAAGGCGCTGACGATTCTGCTGGTATTCTCCAGCACCCAGGCCACTGCGTCCTGCAGGTGGAGCAGGGCCGCACTGTTCCCAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS GCA 90 bp | TCTTTGGCCGATGGGCAGCTGGGAACAGTGCGGCCCTGCTCCACCTaGAGGACGCAGTGGCCTGGGTGCTGGAGAATACCAGCAGAATCG | + |
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Preference number: 5 (lower is better) Translates to: SLADGQLGTVRPCST*RTQWPGCWRIPAES Trigger: CGATTCTGCTGGTATTCTCCAGCACCCAGGCCACTGCGTCCTGCAGGTGGAGCAGGGCCGCACTGTTCCCAGCTGCCCATCGGCCAAAGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS GCA 90 bp | ACAAGGACCTCTTTGGCCGATGGGCAGCTGGGAACAGTGCGGCCCTaGTCCACCTGCAGGACGCAGTGGCCTGGGTGCTGGAGAATACCA | + |
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Preference number: 5 (lower is better) Translates to: TRTSLADGQLGTVRP*STCRTQWPGCWRIP Trigger: TGGTATTCTCCAGCACCCAGGCCACTGCGTCCTGCAGGTGGAGCAGGGCCGCACTGTTCCCAGCTGCCCATCGGCCAAAGAGGTCCTTGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS TCA 90 bp | TTCCACCTCCTCCAGGGAGGTCTGCAGGACTGGATTCAATGGCAGTaGCAAGGACCTCTTTGGCCGATGGGCAGCTGGGAACAGTGCGGC | + |
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Preference number: 5 (lower is better) Translates to: FHLLQGGLQDWIQWQ*QGPLWPMGSWEQCG Trigger: GCCGCACTGTTCCCAGCTGCCCATCGGCCAAAGAGGTCCTTGTCACTGCCATTGAATCCAGTCCTGCAGACCTCCCTGGAGGAGGTGGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR CAA 90 bp | AGGAATCTGCCCACCATCCTCCTGCCATGCTCAGACTCCATCCTCAGTCCCTACGCTAGCTCCTCGTCCTaGATGGAGATCTCCAGGTCT | + |
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Preference number: 5 (lower is better) Translates to: RNLPTILLPCSDSILSPYASSSS*MEISRS Trigger: AGACCTGGAGATCTCCATCAAGGACGAGGAGCTAGC...GTAGGGACTGAGGATGGAGTCTGAGCATGGCAGGAGGATGGTGGGCAGATTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS CCA 90 bp | CGGATATCTGGGATACGCTTGGGGATTATGTTATTGCAGATTGAGTaGAAACTCAAGGCCTTCCGCAGGGAAGCTAGCTCCTCGTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: RISGIRLGIMLLQIE*KLKAFRREASSSSL Trigger: CAAGGACGAGGAGCTAGCTTCCCTGCGGAAGGCCTTGAGTTTCCACTCAATCTGCAATAACATAATCCCCAAGCGTATCCCAGATATCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS GCA 90 bp | CACTCAGCCTTCGGATATCTGGGATACGCTTGGGGATTATGTTATTaGAGATTGAGTGGAAACTCAAGGCCTTCCGCAGGGAAGCTAGCT | + |
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Preference number: 5 (lower is better) Translates to: HSAFGYLGYAWGLCY*RLSGNSRPSAGKLA Trigger: AGCTAGCTTCCCTGCGGAAGGCCTTGAGTTTCCACTCAATCTGCAATAACATAATCCCCAAGCGTATCCCAGATATCCGAAGGCTGAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR CAA 90 bp | TCTTCTTCATGGCTTTGGGGCAAGCCAAGTATATCCTTCTTGGCTAATAGCATAGGGTGGTTTGCCAGGTaGGCACTCAGCCTTCGGATA | + |
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Preference number: 5 (lower is better) Translates to: SSSWLWGKPSISFLANSIGWFAR*ALSLRI Trigger: TATCCGAAGGCTGAGTGCCAACCTGGCAAACCACCC...TATGCTATTAGCCAAGAAGGATATACTTGGCTTGCCCCAAAGCCATGAAGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS-3UTR CAA 90 bp | ATGCTCAGACTCCATCCTCAGTCCCTACTCTTGGGTATGTGTGTAAGTATATCTTCAAAGTCTTCTTTCTaGAGGATTCCAGGGTGGTTT | + |
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Preference number: 5 (lower is better) Translates to: MLRLHPQSLLLGMCVSISSKSSF*RIPGWF Trigger: AAACCACCCTGGAATCCTCAAGAAAGAAGACTTTGA...AGATATACTTACACACATACCCAAGAGTAGGGACTGAGGATGGAGTCTGAGCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS GCA 72 bp | CAAGGACCTCTTTGGCCGATGGGCAGCTGGGAACAGTaGGGCCCTGCTCCACCTGCAGGACGCAGTGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: QGPLWPMGSWEQ*GPAPPAGRSGL Trigger: CAGGCCACTGCGTCCTGCAGGTGGAGCAGGGCCGCACTGTTCCCAGCTGCCCATCGGCCAAAGAGGTCCTTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS GCA 72 bp | CGGCCCTGCTCCACCTGCAGGACGCAGTGGCCTGGGTaGTGGAGAATACCAGCAGAATCGTCAGCGCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: RPCSTCRTQWPG*WRIPAESSAPS Trigger: GGAAGGCGCTGACGATTCTGCTGGTATTCTCCAGCACCCAGGCCACTGCGTCCTGCAGGTGGAGCAGGGCCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS CCA 72 bp | CCCTGCTCCACCTGCAGGACGCAGTGGCCTGGGTGCTaGAGAATACCAGCAGAATCGTCAGCGCCTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: PCSTCRTQWPGC*RIPAESSAPSR Trigger: CCTGGAAGGCGCTGACGATTCTGCTGGTATTCTCCAGCACCCAGGCCACTGCGTCCTGCAGGTGGAGCAGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS CAA 72 bp | GCAGGACTGGATTCAATGGCAGTGACAAGGACCTCTTaGGCCGATGGGCAGCTGGGAACAGTGCGGCCCTGC | + |
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Preference number: 6 (lower is better) Translates to: AGLDSMAVTRTS*ADGQLGTVRPC Trigger: GCAGGGCCGCACTGTTCCCAGCTGCCCATCGGCCAAAGAGGTCCTTGTCACTGCCATTGAATCCAGTCCTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS CAA 72 bp | CTCAAGGCCTTCCGCAGGGAAGCTAGCTCCTCGTCCTaGATGGAGATCTCCAGGTCTGGGCTGATCTCAATT | + |
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Preference number: 6 (lower is better) Translates to: LKAFRREASSSS*MEISRSGLISI Trigger: AATTGAGATCAGCCCAGACCTGGAGATCTCCATCAAGGACGAGGAGCTAGCTTCCCTGCGGAAGGCCTTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS CAA 90 bp | GAGTGGAAACTCAAGGCCTTCCGCAGGGAAGCTAGCTCCTCGTCCTaGATGGAGATCTCCAGGTCTGGGCTGATCTCAATTTCAGCTAGC | + |
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Preference number: 6 (lower is better) Translates to: EWKLKAFRREASSSS*MEISRSGLISISAS Trigger: GCTAGCTGAAATTGAGATCAGCCCAGACCTGGAGATCTCCATCAAGGACGAGGAGCTAGCTTCCCTGCGGAAGGCCTTGAGTTTCCACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS CAA 90 bp | GCCTTCGGATATCTGGGATACGCTTGGGGATTATGTTATTGCAGATaGAGTGGAAACTCAAGGCCTTCCGCAGGGAAGCTAGCTCCTCGT | + |
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Preference number: 6 (lower is better) Translates to: AFGYLGYAWGLCYCR*SGNSRPSAGKLAPR Trigger: ACGAGGAGCTAGCTTCCCTGCGGAAGGCCTTGAGTTTCCACTCAATCTGCAATAACATAATCCCCAAGCGTATCCCAGATATCCGAAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS CAA 90 bp | GCACTCAGCCTTCGGATATCTGGGATACGCTTGGGGATTATGTTATaGCAGATTGAGTGGAAACTCAAGGCCTTCCGCAGGGAAGCTAGC | + |
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Preference number: 6 (lower is better) Translates to: ALSLRISGIRLGIML*QIEWKLKAFRREAS Trigger: GCTAGCTTCCCTGCGGAAGGCCTTGAGTTTCCACTCAATCTGCAATAACATAATCCCCAAGCGTATCCCAGATATCCGAAGGCTGAGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS CCA 72 bp | GGGATACGCTTGGGGATTATGTTATTGCAGATTGAGTaGAAACTCAAGGCCTTCCGCAGGGAAGCTAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: GIRLGIMLLQIE*KLKAFRREASS Trigger: GGAGCTAGCTTCCCTGCGGAAGGCCTTGAGTTTCCACTCAATCTGCAATAACATAATCCCCAAGCGTATCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS GCA 72 bp | CTCAAAGTCTTCTTTCTTGAGGATTCCAGGGTGGTTTaGCAGGTTGGCACTCAGCCTTCGGATATCTGGGAT | + |
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Preference number: 6 (lower is better) Translates to: LKVFFLEDSRVV*QVGTQPSDIWD Trigger: ATCCCAGATATCCGAAGGCTGAGTGCCAACCTGGCAAACCACCCTGGAATCCTCAAGAAAGAAGACTTTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS CAA 72 bp | CTTCGGATATCTGGGATACGCTTGGGGATTATGTTATaGCAGATTGAGTGGAAACTCAAGGCCTTCCGCAGG | + |
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Preference number: 6 (lower is better) Translates to: LRISGIRLGIML*QIEWKLKAFRR Trigger: CCTGCGGAAGGCCTTGAGTTTCCACTCAATCTGCAATAACATAATCCCCAAGCGTATCCCAGATATCCGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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| CDS CAA 72 bp | TATCTGGGATACGCTTGGGGATTATGTTATTGCAGATaGAGTGGAAACTCAAGGCCTTCCGCAGGGAAGCTA | + |
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Preference number: 6 (lower is better) Translates to: YLGYAWGLCYCR*SGNSRPSAGKL Trigger: TAGCTTCCCTGCGGAAGGCCTTGAGTTTCCACTCAATCTGCAATAACATAATCCCCAAGCGTATCCCAGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051176.9 |
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