Pregenerated sensors for FAM166B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042788Ensembl transcript IDs: ENSMUST00000052829.10, ENSMUST00000107928.9, ENSMUST00000107929.10, ENSMUST00000149676.3, ENSMUST00000155080.9, ENSMUST00000171134.9
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GATCTGTATCATCCATGGAGTAGGGGGAAGCTTCTCTCTCTCCCTTaGCTCCGTCTGGCAGTTGATGGCTCTCTTGCTCCCCGTGCCTTC | + |
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Preference number: 1 (lower is better) Translates to: DLYHPWSRGKLLSLP*LRLAVDGSLAPRAF Trigger: GAAGGCACGGGGAGCAAGAGAGCCATCAACTGCCAGACGGAGCCAAGGGAGAGAGAGAAGCTTCCCCCTACTCCATGGATGATACAGATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149676.3 |
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| 3UTR CCA 90 bp | ATCCATGGAGTAGGGGGAAGCTTCTCTCTCTCCCTTGGCTCCGTCTaGCAGTTGATGGCTCTCTTGCTCCCCGTGCCTTCGTGTAAATTC | + |
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Preference number: 1 (lower is better) Translates to: IHGVGGSFSLSLGSV*QLMALLLPVPSCKF Trigger: GAATTTACACGAAGGCACGGGGAGCAAGAGAGCCATCAACTGCCAGACGGAGCCAAGGGAGAGAGAGAAGCTTCCCCCTACTCCATGGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149676.3 |
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| 3UTR TCA 90 bp | AATGTACCGCCAAACTGGAACTTATATCCTGCGTGGCCAAGAGTCTaGCATGTATATAGCCAGAGGCATGAAAAAGCCAGTTGCGTCGAC | + |
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Preference number: 1 (lower is better) Translates to: NVPPNWNLYPAWPRV*HVYSQRHEKASCVD Trigger: GTCGACGCAACTGGCTTTTTCATGCCTCTGGCTATATACATGTCAGACTCTTGGCCACGCAGGATATAAGTTCCAGTTTGGCGGTACATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| 3UTR CAA 90 bp | GGAGTAGGGGGAAGCTTCTCTCTCTCCCTTGGCTCCGTCTGGCAGTaGATGGCTCTCTTGCTCCCCGTGCCTTCGTGTAAATTCACTCAT | + |
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Preference number: 2 (lower is better) Translates to: GVGGSFSLSLGSVWQ*MALLLPVPSCKFTH Trigger: ATGAGTGAATTTACACGAAGGCACGGGGAGCAAGAGAGCCATCAACTGCCAGACGGAGCCAAGGGAGAGAGAGAAGCTTCCCCCTACTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149676.3 |
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| 3UTR-3UTR GCA 90 bp | CAAATGTACCGCCAAACTGGAACTTATATCCTGCGTGGCCAAGAGTCTGACATGAAGCCATTTTCTTTGTaGCCCTCCCCGACCCACCTC | + |
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Preference number: 2 (lower is better) Translates to: QMYRQTGTYILRGQESDMKPFSL*PSPTHL Trigger: GAGGTGGGTCGGGGAGGGGCACAAAGAAAATGGCTT...CATGTCAGACTCTTGGCCACGCAGGATATAAGTTCCAGTTTGGCGGTACATTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| 3UTR-3UTR GCA 90 bp | GAGGCCCAGAGCATCATGGGTAAGATGCCCAAATGTACCGCCAAACTGGAACTTGTCGACCCTCCAAACTaGCCTTTAAAATCTGCTCCC | + |
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Preference number: 2 (lower is better) Translates to: EAQSIMGKMPKCTAKLELVDPPN*PLKSAP Trigger: GGGAGCAGATTTTAAAGGGCAGTTTGGAGGGTCGAC...AAGTTCCAGTTTGGCGGTACATTTGGGCATCTTACCCATGATGCTCTGGGCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| 3UTR-3UTR GCA 90 bp | GAGGCCCAGAGCATCATGGGTAAGATGCCCAAATGTACCGCCAAACTGGAACTTAACTCCCCACTGAACTaGCTCAGAGTTTCCTCTCTA | + |
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Preference number: 2 (lower is better) Translates to: EAQSIMGKMPKCTAKLELNSPLN*LRVSSL Trigger: TAGAGAGGAAACTCTGAGGCAGTTCAGTGGGGAGTT...AAGTTCCAGTTTGGCGGTACATTTGGGCATCTTACCCATGATGCTCTGGGCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| 3UTR-3UTR TCA 90 bp | CAGAGCATCATGGGTAAGATGCCCAAATGTACCGCCAAACTGGAACTTATATCCTTCACTGGGTTAGGATaGGAAGGGAGAACTTGGAAT | + |
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Preference number: 2 (lower is better) Translates to: QSIMGKMPKCTAKLELISFTGLG*EGRTWN Trigger: ATTCCAAGTTCTCCCTTCTCATCCTAACCCAGTGAA...GGATATAAGTTCCAGTTTGGCGGTACATTTGGGCATCTTACCCATGATGCTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| 3UTR CCA 72 bp | GTAGGGGGAAGCTTCTCTCTCTCCCTTGGCTCCGTCTaGCAGTTGATGGCTCTCTTGCTCCCCGTGCCTTCG | + |
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Preference number: 3 (lower is better) Translates to: VGGSFSLSLGSV*QLMALLLPVPS Trigger: CGAAGGCACGGGGAGCAAGAGAGCCATCAACTGCCAGACGGAGCCAAGGGAGAGAGAGAAGCTTCCCCCTAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149676.3 |
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| 3UTR TCA 72 bp | GAAGCTTCTCTCTCTCCCTTGGCTCCGTCTGGCAGTTaGTGGCTCTCTTGCTCCCCGTGCCTTCGTGTAAAT | + |
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Preference number: 3 (lower is better) Translates to: EASLSPLAPSGS*WLSCSPCLRVN Trigger: ATTTACACGAAGGCACGGGGAGCAAGAGAGCCATCAACTGCCAGACGGAGCCAAGGGAGAGAGAGAAGCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149676.3 |
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| 3UTR TCA 72 bp | GAGGAAGCGGGCACGGGGCACATAGCCCGTGAAACCTaGCATGAAGAACTTGTGGGGATCTGTATCATCCAT | + |
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Preference number: 3 (lower is better) Translates to: EEAGTGHIARET*HEELVGICIIH Trigger: ATGGATGATACAGATCCCCACAAGTTCTTCATGTCAGGTTTCACGGGCTATGTGCCCCGTGCCCGCTTCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149676.3 |
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| 3UTR GCA 72 bp | TGCCCTTTAAAATCTGCTCCCAACTCCCCACTGAACTaGCTCAGAGTTTCCTCTCTAAAGCTAAATCCCAGG | + |
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Preference number: 3 (lower is better) Translates to: CPLKSAPNSPLN*LRVSSLKLNPR Trigger: CCTGGGATTTAGCTTTAGAGAGGAAACTCTGAGGCAGTTCAGTGGGGAGTTGGGAGCAGATTTTAAAGGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR TCA 90 bp | CCCTCCAAACTGCCCTTTAAAATCTGCTCCCAACTCCCCACTGAACTGCCTCAGAGGTCTGGCCCATGCTaGACCGAAGTAGCGGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: PSKLPFKICSQLPTELPQRSGPC*TEVAGS Trigger: ACTGCCCGCTACTTCGGTTCAGCATGGGCCAGACCT...CTGAGGCAGTTCAGTGGGGAGTTGGGAGCAGATTTTAAAGGGCAGTTTGGAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR TCA 90 bp | CTGAGGCCCAGAGCATCATGGGTAAGATGCCCAAATGTACCGCCAAACTGGAACGGATTATGCTGGAGCTaGGCCTTTCATGCCCGCGCC | + |
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Preference number: 4 (lower is better) Translates to: LRPRASWVRCPNVPPNWNGLCWS*AFHARA Trigger: GGCGCGGGCATGAAAGGCTCAGCTCCAGCATAATCC...GTTCCAGTTTGGCGGTACATTTGGGCATCTTACCCATGATGCTCTGGGCCTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| 3UTR CAA 72 bp | GGAAGCTTCTCTCTCTCCCTTGGCTCCGTCTGGCAGTaGATGGCTCTCTTGCTCCCCGTGCCTTCGTGTAAA | + |
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Preference number: 4 (lower is better) Translates to: GSFSLSLGSVWQ*MALLLPVPSCK Trigger: TTTACACGAAGGCACGGGGAGCAAGAGAGCCATCAACTGCCAGACGGAGCCAAGGGAGAGAGAGAAGCTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149676.3 |
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| CDS-3UTR GCA 90 bp | CTGTTTCTGAGTAATGCTGAGGCCCAGAGCATCATGGGTAAGATGCCCAAATGTCAGCGGTGGCTCCTCTaGCTCCCGCAGCTGGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: LFLSNAEAQSIMGKMPKCQRWLL*LPQLVF Trigger: GAAGACCAGCTGCGGGAGGCAGAGGAGCCACCGCTG...ACATTTGGGCATCTTACCCATGATGCTCTGGGCCTCAGCATTACTCAGAAACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CCA 90 bp | AGGGAGAACTTGGAATCCAGGTACTTAGGCCGGGAGCTGTTTCTGAGTAATGCTCGTGGGCCTGGGAAGTaGGGAGAGAGGTTTGGGGTC | + |
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Preference number: 4 (lower is better) Translates to: RENLESRYLGRELFLSNARGPGK*GERFGV Trigger: GACCCCAAACCTCTCTCCCCACTTCCCAGGCCCACG...AGCATTACTCAGAAACAGCTCCCGGCCTAAGTACCTGGATTCCAAGTTCTCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR TCA 90 bp | AAATCTGCTCCCAACTCCCCACTGAACTGCCTCAGAGTTTCCTCTCTAAAGCTAGCTCCGTCTGGCAGTTaGTGGCTCTCTTGCTCCCCG | + |
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Preference number: 4 (lower is better) Translates to: KSAPNSPLNCLRVSSLKLAPSGS*WLSCSP Trigger: CGGGGAGCAAGAGAGCCATCAACTGCCAGACGGAGC...TAGCTTTAGAGAGGAAACTCTGAGGCAGTTCAGTGGGGAGTTGGGAGCAGATTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR TCA 90 bp | CAGAGCATCATGGGTAAGATGCCCAAATGTACCGCCAAACTGGAACTTATATCCGTGCGCCCGGCCCCGTaGGCACATCTGCCCAAATTC | + |
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Preference number: 4 (lower is better) Translates to: QSIMGKMPKCTAKLELISVRPAP*AHLPKF Trigger: GAATTTGGGCAGATGTGCTCACGGGGCCGGGCGCAC...GGATATAAGTTCCAGTTTGGCGGTACATTTGGGCATCTTACCCATGATGCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR GCA 90 bp | TTTAAAATCTGCTCCCAACTCCCCACTGAACTGCCTCAGAGTTTCCTCTCTAAAGGTTTGGGGTCCTTGTaGGCCCGGCCCCGTGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: FKICSQLPTELPQSFLSKGLGSL*ARPREH Trigger: GTGCTCACGGGGCCGGGCGCACAAGGACCCCAAACC...TTTAGAGAGGAAACTCTGAGGCAGTTCAGTGGGGAGTTGGGAGCAGATTTTAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CCA 90 bp | CCCTCCAAACTGCCCTTTAAAATCTGCTCCCAACTCCCCACTGAACTGCCTCAGTCTGCCTCCCGCAGCTaGTCTTCTTCCACTTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: PSKLPFKICSQLPTELPQSASRS*SSSTSL Trigger: GAGAGAAGTGGAAGAAGACCAGCTGCGGGAGGCAGA...CTGAGGCAGTTCAGTGGGGAGTTGGGAGCAGATTTTAAAGGGCAGTTTGGAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CCA 90 bp | CTGAGGCCCAGAGCATCATGGGTAAGATGCCCAAATGTACCGCCAAACTGGAACGGAGATCTTGGAGACTaGATGGGAGGCAGAAGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: LRPRASWVRCPNVPPNWNGDLGD*MGGRSV Trigger: CACACTTCTGCCTCCCATCCAGTCTCCAAGATCTCC...GTTCCAGTTTGGCGGTACATTTGGGCATCTTACCCATGATGCTCTGGGCCTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CCA 90 bp | CACTGGGTTAGGATGAGAAGGGAGAACTTGGAATCCAGGTACTTAGGCCGGGAGCTTCTCTCTCTCCCTTaGCTCCGTCTGGCAGTTGAT | + |
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Preference number: 4 (lower is better) Translates to: HWVRMRRENLESRYLGRELLSLP*LRLAVD Trigger: ATCAACTGCCAGACGGAGCCAAGGGAGAGAGAGAAG...CTCCCGGCCTAAGTACCTGGATTCCAAGTTCTCCCTTCTCATCCTAACCCAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CCA 90 bp | GAGGCCCAGAGCATCATGGGTAAGATGCCCAAATGTACCGCCAAACTGGAACTTCCAGATTCTGAAACGTaGGCCTGGGAAGTGGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: EAQSIMGKMPKCTAKLELPDSET*AWEVGR Trigger: TCTCCCCACTTCCCAGGCCCACGTTTCAGAATCTGG...AAGTTCCAGTTTGGCGGTACATTTGGGCATCTTACCCATGATGCTCTGGGCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR GCA 90 bp | TCTGCTCCCAACTCCCCACTGAACTGCCTCAGAGTTTCCTCTCTAAAGCTAAATGCATGTGCCAACTCCTaGTTCAGCGGTGGCTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: SAPNSPLNCLRVSSLKLNACANS*FSGGSS Trigger: AGAGGAGCCACCGCTGAAGCAGGAGTTGGCACATGC...ATTTAGCTTTAGAGAGGAAACTCTGAGGCAGTTCAGTGGGGAGTTGGGAGCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CCA 90 bp | ACTTATATCCTGCGTGGCCAAGAGTCTGACATGTATATAGCCAGAGGCATGAAAGGCAGAAGTGTGCGGTaGGCAGGAGGCCAGGCTAGA | + |
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Preference number: 4 (lower is better) Translates to: TYILRGQESDMYIARGMKGRSVR*AGGQAR Trigger: TCTAGCCTGGCCTCCTGCCCACCGCACACTTCTGCC...TTTCATGCCTCTGGCTATATACATGTCAGACTCTTGGCCACGCAGGATATAAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CCA 90 bp | ATGCCCAAATGTACCGCCAAACTGGAACTTATATCCTGCGTGGCCAAGAGTCTGTCTGAAACGTGGGCCTaGGAAGTGGGGAGAGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: MPKCTAKLELISCVAKSLSETWA*EVGREV Trigger: AACCTCTCTCCCCACTTCCCAGGCCCACGTTTCAGA...CAGACTCTTGGCCACGCAGGATATAAGTTCCAGTTTGGCGGTACATTTGGGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CCA 90 bp | AAATCTGCTCCCAACTCCCCACTGAACTGCCTCAGAGTTTCCTCTCTAAAGCTAATCTTGGAGACTGGATaGGAGGCAGAAGTGTGCGGT | + |
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Preference number: 4 (lower is better) Translates to: KSAPNSPLNCLRVSSLKLILETG*EAEVCG Trigger: ACCGCACACTTCTGCCTCCCATCCAGTCTCCAAGAT...TAGCTTTAGAGAGGAAACTCTGAGGCAGTTCAGTGGGGAGTTGGGAGCAGATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CCA 90 bp | TTTAAAATCTGCTCCCAACTCCCCACTGAACTGCCTCAGAGTTTCCTCTCTAAAGAGGCAGCCTCCCCTTaGAGATCACAGGAGATCTTG | + |
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Preference number: 4 (lower is better) Translates to: FKICSQLPTELPQSFLSKEAASP*RSQEIL Trigger: CAAGATCTCCTGTGATCTCCAAGGGGAGGCTGCCTC...TTTAGAGAGGAAACTCTGAGGCAGTTCAGTGGGGAGTTGGGAGCAGATTTTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CCA 90 bp | TTTAAAATCTGCTCCCAACTCCCCACTGAACTGCCTCAGAGTTTCCTCTCTAAAGATCACAGGAGATCTTaGAGACTGGATGGGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: FKICSQLPTELPQSFLSKDHRRS*RLDGRQ Trigger: CTGCCTCCCATCCAGTCTCCAAGATCTCCTGTGATC...TTTAGAGAGGAAACTCTGAGGCAGTTCAGTGGGGAGTTGGGAGCAGATTTTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CCA 90 bp | CAAATGTACCGCCAAACTGGAACTTATATCCTGCGTGGCCAAGAGTCTGACATGGCTTCAGCCCAAACCTaGTTGCAGTTCTTGGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: QMYRQTGTYILRGQESDMASAQT*LQFLAK Trigger: TTTTGCCAAGAACTGCAACCAGGTTTGGGCTGAAGC...CATGTCAGACTCTTGGCCACGCAGGATATAAGTTCCAGTTTGGCGGTACATTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CCA 90 bp | CACATCTGCCCAAATTCCTGCAATGCCTGGTTGGTAAGCACAGGGAAGCTGGAGCGTGGTATAAAACCCTaGAATATAATGCGGATTCTC | + |
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Preference number: 4 (lower is better) Translates to: HICPNSCNAWLVSTGKLERGIKP*NIMRIL Trigger: GAGAATCCGCATTATATTCCAGGGTTTTATACCACG...CTCCAGCTTCCCTGTGCTTACCAACCAGGCATTGCAGGAATTTGGGCAGATGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149676.3 |
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| CDS-3UTR CCA 90 bp | ATGCCCAAATGTACCGCCAAACTGGAACTTATATCCTGCGTGGCCAAGAGTCTGAATGAACTGTGCCCGTaGTATAAAACCTGTATACCC | + |
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Preference number: 4 (lower is better) Translates to: MPKCTAKLELISCVAKSLNELCP*YKTCIP Trigger: GGGTATACAGGTTTTATACCACGGGCACAGTTCATT...CAGACTCTTGGCCACGCAGGATATAAGTTCCAGTTTGGCGGTACATTTGGGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CCA 90 bp | ACTTATATCCTGCGTGGCCAAGAGTCTGACATGTATATAGCCAGAGGCATGAAAAATTCCTGCAATGCCTaGTTGGTAAGCACAGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: TYILRGQESDMYIARGMKNSCNA*LVSTGK Trigger: CTTCCCTGTGCTTACCAACCAGGCATTGCAGGAATT...TTTCATGCCTCTGGCTATATACATGTCAGACTCTTGGCCACGCAGGATATAAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CCA 90 bp | CAGAGCATCATGGGTAAGATGCCCAAATGTACCGCCAAACTGGAACTTATATCCGACATGAAGAACTTGTaGGGATCTGTATCATCCATG | + |
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Preference number: 4 (lower is better) Translates to: QSIMGKMPKCTAKLELISDMKNL*GSVSSM Trigger: CATGGATGATACAGATCCCCACAAGTTCTTCATGTC...GGATATAAGTTCCAGTTTGGCGGTACATTTGGGCATCTTACCCATGATGCTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS GCA 90 bp | GAGAGAGGTTTGGGGTCCTTGTGCGCCCGGCCCCGTGAGCACATCTaGCCAAATTCCTGCAATGCCTGGTTGGTAAGCACAGGGAAGCTG | + |
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Preference number: 5 (lower is better) Translates to: ERGLGSLCARPREHI*PNSCNAWLVSTGKL Trigger: CAGCTTCCCTGTGCTTACCAACCAGGCATTGCAGGAATTTGGGCAGATGTGCTCACGGGGCCGGGCGCACAAGGACCCCAAACCTCTCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000052829.10 ENSMUST00000107928.9 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS GCA 90 bp | GAACTTGTGGGGATCTGTATCATCCATGGAGTAGGGGGAAGCATGTaGCAACTCCTGCTTCAGCGGTGGCTCCTCTGCCTCCCGCAGCTG | + |
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Preference number: 5 (lower is better) Translates to: ELVGICIIHGVGGSM*QLLLQRWLLCLPQL Trigger: CAGCTGCGGGAGGCAGAGGAGCCACCGCTGAAGCAGGAGTTGGCACATGCTTCCCCCTACTCCATGGATGATACAGATCCCCACAAGTTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000052829.10 ENSMUST00000107929.10 ENSMUST00000155080.9 ENSMUST00000171134.9 |
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| CDS CCA 90 bp | ATCCATGGAGTAGGGGGAAGCATGTGCCAACTCCTGCTTCAGCGGTaGCTCCTCTGCCTCCCGCAGCTGGTCTTCTTCCACTTCTCTCTC | + |
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Preference number: 5 (lower is better) Translates to: IHGVGGSMCQLLLQR*LLCLPQLVFFHFSL Trigger: GAGAGAGAAGTGGAAGAAGACCAGCTGCGGGAGGCAGAGGAGCCACCGCTGAAGCAGGAGTTGGCACATGCTTCCCCCTACTCCATGGAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000052829.10 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS-3UTR CAA 90 bp | CTGAGGCCCAGAGCATCATGGGTAAGATGCCCAAATGTACCGCCAAACTGGAACGGCTCCGTCTGGCAGTaGATGGCTCTCTTGCTCCCC | + |
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Preference number: 5 (lower is better) Translates to: LRPRASWVRCPNVPPNWNGSVWQ*MALLLP Trigger: GGGGAGCAAGAGAGCCATCAACTGCCAGACGGAGCC...GTTCCAGTTTGGCGGTACATTTGGGCATCTTACCCATGATGCTCTGGGCCTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CAA 90 bp | CTGTTTCTGAGTAATGCTGAGGCCCAGAGCATCATGGGTAAGATGCCCAAATGTAGTGGGGAGAGAGGTTaGGGGTCCTTGTGCGCCCGG | + |
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Preference number: 5 (lower is better) Translates to: LFLSNAEAQSIMGKMPKCSGERG*GSLCAR Trigger: CCGGGCGCACAAGGACCCCAAACCTCTCTCCCCACT...ACATTTGGGCATCTTACCCATGATGCTCTGGGCCTCAGCATTACTCAGAAACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CAA 90 bp | GTAGGGGGAAGCTTCTCTCTCTCCCTTGGCTCCGTCTGGCAGTTGATGGCTCTCTCAGCCCAAACCTGGTaGCAGTTCTTGGCAAAAATG | + |
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Preference number: 5 (lower is better) Translates to: VGGSFSLSLGSVWQLMALSAQTW*QFLAKM Trigger: CATTTTTGCCAAGAACTGCAACCAGGTTTGGGCTGA...GAGAGCCATCAACTGCCAGACGGAGCCAAGGGAGAGAGAGAAGCTTCCCCCTAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000149676.3 |
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| CDS-3UTR CAA 90 bp | CAAATGTACCGCCAAACTGGAACTTATATCCTGCGTGGCCAAGAGTCTGACATGGGAGGCAGCCTCCCCTaGGAGATCACAGGAGATCTT | + |
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Preference number: 5 (lower is better) Translates to: QMYRQTGTYILRGQESDMGGSLP*EITGDL Trigger: AAGATCTCCTGTGATCTCCAAGGGGAGGCTGCCTCC...CATGTCAGACTCTTGGCCACGCAGGATATAAGTTCCAGTTTGGCGGTACATTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CAA 90 bp | CTGTATCATCCATGGAGTAGGGGGAAGCTTCTCTCTCTCCCTTGGCTCCGTCTGACCTGGTTGCAGTTCTaGGCAAAAATGAACTGTGCC | + |
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Preference number: 5 (lower is better) Translates to: LYHPWSRGKLLSLPWLRLTWLQF*AKMNCA Trigger: GGCACAGTTCATTTTTGCCAAGAACTGCAACCAGGT...CAGACGGAGCCAAGGGAGAGAGAGAAGCTTCCCCCTACTCCATGGATGATACAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000149676.3 |
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| CDS CCA 90 bp | TTGCAGTTCTTGGCAAAAATGAACTGTGCCCGTGGTATAAAACCCTaGAATATAATGCGGATTCTCGCCGCTGAGCCCTGGGATGGAAGT | + |
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Preference number: 5 (lower is better) Translates to: LQFLAKMNCARGIKP*NIMRILAAEPWDGS Trigger: ACTTCCATCCCAGGGCTCAGCGGCGAGAATCCGCATTATATTCCAGGGTTTTATACCACGGGCACAGTTCATTTTTGCCAAGAACTGCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149676.3 |
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| CDS-3UTR CAA 90 bp | TTTAAAATCTGCTCCCAACTCCCCACTGAACTGCCTCAGAGTTTCCTCTCTAAAAGATCACAGGAGATCTaGGAGACTGGATGGGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: FKICSQLPTELPQSFLSKRSQEI*ETGWEA Trigger: TGCCTCCCATCCAGTCTCCAAGATCTCCTGTGATCT...TTTAGAGAGGAAACTCTGAGGCAGTTCAGTGGGGAGTTGGGAGCAGATTTTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS-3UTR CAA 90 bp | CTGTTTCTGAGTAATGCTGAGGCCCAGAGCATCATGGGTAAGATGCCCAAATGTACCTGGTTGCAGTTCTaGGCAAAAATGAACTGTGCC | + |
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Preference number: 5 (lower is better) Translates to: LFLSNAEAQSIMGKMPKCTWLQF*AKMNCA Trigger: GGCACAGTTCATTTTTGCCAAGAACTGCAACCAGGT...ACATTTGGGCATCTTACCCATGATGCTCTGGGCCTCAGCATTACTCAGAAACAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171134.9 |
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| CDS CCA 90 bp | TCCCCGTGCCTTCGTGTAAATTCACTCATAGCTTCAGCCCAAACCTaGTTGCAGTTCTTGGCAAAAATGAACTGTGCCCGTGGTATAAAA | + |
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Preference number: 5 (lower is better) Translates to: SPCLRVNSLIASAQT*LQFLAKMNCARGIK Trigger: TTTTATACCACGGGCACAGTTCATTTTTGCCAAGAACTGCAACCAGGTTTGGGCTGAAGCTATGAGTGAATTTACACGAAGGCACGGGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000052829.10 ENSMUST00000107928.9 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS CCA 72 bp | GCCTTTCATGCCCGCGCCTGGGAGGCAGCCTCCCCTTaGAGATCACAGGAGATCTTGGAGACTGGATGGGAG | + |
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Preference number: 6 (lower is better) Translates to: AFHARAWEAASP*RSQEILETGWE Trigger: CTCCCATCCAGTCTCCAAGATCTCCTGTGATCTCCAAGGGGAGGCTGCCTCCCAGGCGCGGGCATGAAAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000052829.10 ENSMUST00000107928.9 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS CCA 72 bp | GTAGGGGGAAGCATGTGCCAACTCCTGCTTCAGCGGTaGCTCCTCTGCCTCCCGCAGCTGGTCTTCTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: VGGSMCQLLLQR*LLCLPQLVFFH Trigger: GTGGAAGAAGACCAGCTGCGGGAGGCAGAGGAGCCACCGCTGAAGCAGGAGTTGGCACATGCTTCCCCCTAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000052829.10 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS TCA 72 bp | GGAGAGAGGTTTGGGGTCCTTGTGCGCCCGGCCCCGTaGGCACATCTGCCCAAATTCCTGCAATGCCTGGTT | + |
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Preference number: 6 (lower is better) Translates to: GERFGVLVRPAP*AHLPKFLQCLV Trigger: AACCAGGCATTGCAGGAATTTGGGCAGATGTGCTCACGGGGCCGGGCGCACAAGGACCCCAAACCTCTCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000052829.10 ENSMUST00000107928.9 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS GCA 72 bp | GTATACCCAGGGATTATGCTGGAGCTGAGCCTTTCATaGCCGCGCCTGGGAGGCAGCCTCCCCTTGGAGATC | + |
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Preference number: 6 (lower is better) Translates to: VYPGIMLELSLS*PRLGGSLPLEI Trigger: GATCTCCAAGGGGAGGCTGCCTCCCAGGCGCGGGCATGAAAGGCTCAGCTCCAGCATAATCCCTGGGTATAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000052829.10 ENSMUST00000107928.9 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS GCA 72 bp | AGCATGTGCCAACTCCTGCTTCAGCGGTGGCTCCTCTaGCTCCCGCAGCTGGTCTTCTTCCACTTCTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: SMCQLLLQRWLL*LPQLVFFHFSL Trigger: GAGAGAGAAGTGGAAGAAGACCAGCTGCGGGAGGCAGAGGAGCCACCGCTGAAGCAGGAGTTGGCACATGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052829.10 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS GCA 72 bp | TTGGGGTCCTTGTGCGCCCGGCCCCGTGAGCACATCTaGCCAAATTCCTGCAATGCCTGGTTGGTAAGCACA | + |
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Preference number: 6 (lower is better) Translates to: LGSLCARPREHI*PNSCNAWLVST Trigger: TGTGCTTACCAACCAGGCATTGCAGGAATTTGGGCAGATGTGCTCACGGGGCCGGGCGCACAAGGACCCCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000052829.10 ENSMUST00000107928.9 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS GCA 72 bp | GGGATCTGTATCATCCATGGAGTAGGGGGAAGCATGTaGCAACTCCTGCTTCAGCGGTGGCTCCTCTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: GICIIHGVGGSM*QLLLQRWLLCL Trigger: GAGGCAGAGGAGCCACCGCTGAAGCAGGAGTTGGCACATGCTTCCCCCTACTCCATGGATGATACAGATCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000052829.10 ENSMUST00000107929.10 ENSMUST00000155080.9 ENSMUST00000171134.9 |
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| CDS TCA 72 bp | TCCACTTCTCTCTCTCCCTTGGCTCCGTCTGGCAGTTaGTGGCTCTCTTGCTCCCCGTGCCTTCGTGTAAAT | + |
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Preference number: 6 (lower is better) Translates to: STSLSPLAPSGS*WLSCSPCLRVN Trigger: ATTTACACGAAGGCACGGGGAGCAAGAGAGCCATCAACTGCCAGACGGAGCCAAGGGAGAGAGAGAAGTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052829.10 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS CAA 72 bp | TTCCACTTCTCTCTCTCCCTTGGCTCCGTCTGGCAGTaGATGGCTCTCTTGCTCCCCGTGCCTTCGTGTAAA | + |
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Preference number: 6 (lower is better) Translates to: FHFSLSLGSVWQ*MALLLPVPSCK Trigger: TTTACACGAAGGCACGGGGAGCAAGAGAGCCATCAACTGCCAGACGGAGCCAAGGGAGAGAGAGAAGTGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052829.10 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS CAA 90 bp | CACTTCTCTCTCTCCCTTGGCTCCGTCTGGCAGTTGATGGCTCTCTaGCTCCCCGTGCCTTCGTGTAAATTCACTCATAGCTTCAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: HFSLSLGSVWQLMAL*LPVPSCKFTHSFSP Trigger: TGGGCTGAAGCTATGAGTGAATTTACACGAAGGCACGGGGAGCAAGAGAGCCATCAACTGCCAGACGGAGCCAAGGGAGAGAGAGAAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052829.10 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS TCA 72 bp | CGCCTTTGGTTGCTACCCACTTCCTCTCACCTGACATaGAGAACTTGTGGGGATCTGTATCATCCATGGAGT | + |
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Preference number: 6 (lower is better) Translates to: RLWLLPTSSHLT*RTCGDLYHPWS Trigger: ACTCCATGGATGATACAGATCCCCACAAGTTCTTCATGTCAGGTGAGAGGAAGTGGGTAGCAACCAAAGGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052829.10 |
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| CDS TCA 72 bp | AGTGAGGTAGGAGACCCAGATTCTGAAACGTGGGCCTaGCATGAAGAACTTGTGGGGATCTGTATCATCCAT | + |
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Preference number: 6 (lower is better) Translates to: SEVGDPDSETWA*HEELVGICIIH Trigger: ATGGATGATACAGATCCCCACAAGTTCTTCATGTCAGGCCCACGTTTCAGAATCTGGGTCTCCTACCTCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155080.9 |
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| CDS CAA 90 bp | CCGTGCCTTCGTGTAAATTCACTCATAGCTTCAGCCCAAACCTGGTaGCAGTTCTTGGCAAAAATGAACTGTGCCCGTGGTATAAAACCT | + |
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Preference number: 6 (lower is better) Translates to: PCLRVNSLIASAQTW*QFLAKMNCARGIKP Trigger: AGGTTTTATACCACGGGCACAGTTCATTTTTGCCAAGAACTGCAACCAGGTTTGGGCTGAAGCTATGAGTGAATTTACACGAAGGCACGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000052829.10 ENSMUST00000107928.9 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS CAA 72 bp | CGTGTAAATTCACTCATAGCTTCAGCCCAAACCTGGTaGCAGTTCTTGGCAAAAATGAACTGTGCCCGTGGT | + |
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Preference number: 6 (lower is better) Translates to: RVNSLIASAQTW*QFLAKMNCARG Trigger: ACCACGGGCACAGTTCATTTTTGCCAAGAACTGCAACCAGGTTTGGGCTGAAGCTATGAGTGAATTTACACG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000052829.10 ENSMUST00000107928.9 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS CCA 72 bp | CTTCGTGTAAATTCACTCATAGCTTCAGCCCAAACCTaGTTGCAGTTCTTGGCAAAAATGAACTGTGCCCGT | + |
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Preference number: 6 (lower is better) Translates to: LRVNSLIASAQT*LQFLAKMNCAR Trigger: ACGGGCACAGTTCATTTTTGCCAAGAACTGCAACCAGGTTTGGGCTGAAGCTATGAGTGAATTTACACGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000052829.10 ENSMUST00000107928.9 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS CCA 72 bp | CTGGTTGCAGTTCTTGGCAAAAATGAACTGTGCCCGTaGTATAAAACCCTGGAATATAATGCGGATTCTCGC | + |
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Preference number: 6 (lower is better) Translates to: LVAVLGKNELCP*YKTLEYNADSR Trigger: GCGAGAATCCGCATTATATTCCAGGGTTTTATACCACGGGCACAGTTCATTTTTGCCAAGAACTGCAACCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149676.3 |
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| CDS CAA 90 bp | CGTGTAAATTCACTCATAGCTTCAGCCCAAACCTGGTTGCAGTTCTaGGCAAAAATGAACTGTGCCCGTGGTATAAAACCTGTATACCCA | + |
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Preference number: 6 (lower is better) Translates to: RVNSLIASAQTWLQF*AKMNCARGIKPVYP Trigger: TGGGTATACAGGTTTTATACCACGGGCACAGTTCATTTTTGCCAAGAACTGCAACCAGGTTTGGGCTGAAGCTATGAGTGAATTTACACG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000052829.10 ENSMUST00000107928.9 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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| CDS GCA 72 bp | CCAAACCTGGTTGCAGTTCTTGGCAAAAATGAACTGTaGCCGTGGTATAAAACCTGTATACCCAGGGATTAT | + |
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Preference number: 6 (lower is better) Translates to: PNLVAVLGKNEL*PWYKTCIPRDY Trigger: ATAATCCCTGGGTATACAGGTTTTATACCACGGGCACAGTTCATTTTTGCCAAGAACTGCAACCAGGTTTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000052829.10 ENSMUST00000107928.9 ENSMUST00000107929.10 ENSMUST00000171134.9 |
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