RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FADS2B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075217

Ensembl transcript IDs: ENSMUST00000099923.2

Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp TTTCTTCTTTCTCTCAGTTACAGAGAAGACCTTCAGGGAGAGGTTAATATATATTCAGAGAAAAGCCCATaGACAGCCATCACCCTCTTC +
Preference number: 2 (lower is better)
Translates to: FLLSLSYREDLQGEVNIYSEKSP*TAITLF
Trigger: GAAGAGGGTGATGGCTGTGCATGGGCTTTTCTCTGA...ATATATATTAACCTCTCCCTGAAGGTCTTCTCTGTAACTGAGAGAAAGAAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
3UTR CCA 72 bp AGAGAAGACCTTCAGGGAGAGGTTAATATATATTCTTaGGATTCACATTCCTGGGACACTCATGTATGCTGC +
Preference number: 3 (lower is better)
Translates to: REDLQGEVNIYS*DSHSWDTHVCC
Trigger: GCAGCATACATGAGTGTCCCAGGAATGTGAATCCCAAGAATATATATTAACCTCTCCCTGAAGGTCTTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
3UTR CCA 72 bp GGAGAGGTTAATATATATTCTTGGGATTCACATTCCTaGGACACTCATGTATGCTGCTTTTGCCAGTTAATT +
Preference number: 3 (lower is better)
Translates to: GEVNIYSWDSHS*DTHVCCFCQLI
Trigger: AATTAACTGGCAAAAGCAGCATACATGAGTGTCCCAGGAATGTGAATCCCAAGAATATATATTAACCTCTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
3UTR TCA 72 bp TATATTATTAACTGCCCCCACAAGAAACAATTTCACTaGGGTCTATTGGAACTAAGTCCAATTTTAACCCTA +
Preference number: 3 (lower is better)
Translates to: YIINCPHKKQFH*GLLELSPILTL
Trigger: TAGGGTTAAAATTGGACTTAGTTCCAATAGACCTCAGTGAAATTGTTTCTTGTGGGGGCAGTTAATAATATA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR GCA 90 bp GCCCATGCACAGCCATCACCCTCTTCAGAGACACCAATAAATGCAAGGCTCTGCATGCCCAGATCCAGGTaGATGGCCCTGAAAGCATCC +
Preference number: 4 (lower is better)
Translates to: AHAQPSPSSETPINARLCMPRSR*MALKAS
Trigger: GGATGCTTTCAGGGCCATGCACCTGGATCTGGGCAT...GCAGAGCCTTGCATTTATTGGTGTCTCTGAAGAGGGTGATGGCTGTGCATGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR GCA 90 bp GCCCATGCACAGCCATCACCCTCTTCAGAGACACCAATAAATGCAAGGCTCTGCCTCCACTTTTCCATTTaGTGTCGGATTCCCATTAGC +
Preference number: 4 (lower is better)
Translates to: AHAQPSPSSETPINARLCLHFSI*CRIPIS
Trigger: GCTAATGGGAATCCGACAGCAAATGGAAAAGTGGAG...GCAGAGCCTTGCATTTATTGGTGTCTCTGAAGAGGGTGATGGCTGTGCATGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR TCA 90 bp AATCAGAGAAAAGCCCATGCACAGCCATCACCCTCTTCAGAGACACCAATAAATCCACAACCTGAGTGCTaGGCCAGTCGTGGTTCTCTT +
Preference number: 4 (lower is better)
Translates to: NQRKAHAQPSPSSETPINPQPEC*ASRGSL
Trigger: AAGAGAACCACGACTGGCTCAGCACTCAGGTTGTGG...ATTTATTGGTGTCTCTGAAGAGGGTGATGGCTGTGCATGGGCTTTTCTCTGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR TCA 90 bp GAGAGGTTAATATATATTCTTGGGATTCACATTCCTGGGACACTCATGTATGCTCAGGTGGCCACAACCTaGGTGCTGAGCCAGTCGTGG +
Preference number: 4 (lower is better)
Translates to: ERLIYILGIHIPGTLMYAQVATT*VLSQSW
Trigger: CCACGACTGGCTCAGCACTCAGGTTGTGGCCACCTG...AGCATACATGAGTGTCCCAGGAATGTGAATCCCAAGAATATATATTAACCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR TCA 90 bp TGGGATTCACATTCCTGGGACACTCATGTATGCTGCTTTTGCCAGTTAATTCTCACCGCAGGTTGGCACTaGACATGTTCATGGCCTCTA +
Preference number: 4 (lower is better)
Translates to: WDSHSWDTHVCCFCQLILTAGWH*TCSWPL
Trigger: TAGAGGCCATGAACATGTTCAGTGCCAACCTGCGGT...GAGAATTAACTGGCAAAAGCAGCATACATGAGTGTCCCAGGAATGTGAATCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR TCA 90 bp GTTAATTCTCAGTTAATCAGAGAAAAGCCCATGCACAGCCATCACCCTCTTCAGATGCTTGGCACAAAGTaGCTTCACCAGAGGTGCCAC +
Preference number: 4 (lower is better)
Translates to: VNSQLIREKPMHSHHPLQMLGTK*LHQRCH
Trigger: GTGGCACCTCTGGTGAAGTCACTTTGTGCCAAGCAT...CTGAAGAGGGTGATGGCTGTGCATGGGCTTTTCTCTGATTAACTGAGAATTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR GCA 90 bp AATCAGAGAAAAGCCCATGCACAGCCATCACCCTCTTCAGAGACACCAATAAATCGAGCCTGTTGCCCTTaGCATTTGCCTCCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: NQRKAHAQPSPSSETPINRACCP*HLPPAF
Trigger: AAAAGCAGGAGGCAAATGGCAAGGGCAACAGGCTCG...ATTTATTGGTGTCTCTGAAGAGGGTGATGGCTGTGCATGGGCTTTTCTCTGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR TCA 90 bp TCTCAGTTAATCAGAGAAAAGCCCATGCACAGCCATCACCCTCTTCAGAGACACCAGCTGACAGGCCCTTaGGATGACACATTACAAATT +
Preference number: 4 (lower is better)
Translates to: SQLIREKPMHSHHPLQRHQLTGP*DDTLQI
Trigger: AATTTGTAATGTGTCATCTCAAGGGCCTGTCAGCTG...GTGTCTCTGAAGAGGGTGATGGCTGTGCATGGGCTTTTCTCTGATTAACTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR TCA 90 bp AATCAGAGAAAAGCCCATGCACAGCCATCACCCTCTTCAGAGACACCAATAAATATTCCACCAATCAGCTaGCAGGCCCTTGAGATGACA +
Preference number: 4 (lower is better)
Translates to: NQRKAHAQPSPSSETPINIPPIS*QALEMT
Trigger: TGTCATCTCAAGGGCCTGTCAGCTGATTGGTGGAAT...ATTTATTGGTGTCTCTGAAGAGGGTGATGGCTGTGCATGGGCTTTTCTCTGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CCA 90 bp TCTCAGTTAATCAGAGAAAAGCCCATGCACAGCCATCACCCTCTTCAGAGACACCAGCTGCTGCCAAAATaGTGTAGTATTAGCCATGCT +
Preference number: 4 (lower is better)
Translates to: SQLIREKPMHSHHPLQRHQLLPK*CSISHA
Trigger: AGCATGGCTAATACTACACCATTTTGGCAGCAGCTG...GTGTCTCTGAAGAGGGTGATGGCTGTGCATGGGCTTTTCTCTGATTAACTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CCA 90 bp TCTCAGTTAATCAGAGAAAAGCCCATGCACAGCCATCACCCTCTTCAGAGACACGCCCACATCAATGTCTaGATCCTTGGGGTAGATATT +
Preference number: 4 (lower is better)
Translates to: SQLIREKPMHSHHPLQRHAHINV*ILGVDI
Trigger: AATATCTACCCCAAGGATCCAGACATTGATGTGGGC...GTGTCTCTGAAGAGGGTGATGGCTGTGCATGGGCTTTTCTCTGATTAACTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR GCA 90 bp GTTAATTCTCAGTTAATCAGAGAAAAGCCCATGCACAGCCATCACCCTCTTCAGGTTGCCCTTGCCATTTaGCTCCTGCTTTTCATAGAC +
Preference number: 4 (lower is better)
Translates to: VNSQLIREKPMHSHHPLQVALAI*LLLFID
Trigger: GTCTATGAAAAGCAGGAGGCAAATGGCAAGGGCAAC...CTGAAGAGGGTGATGGCTGTGCATGGGCTTTTCTCTGATTAACTGAGAATTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CCA 90 bp TTTCTTCTTTCTCTCAGTTACAGAGAAGACCTTCAGGGAGAGGTTAATATATATAACCCGACGTCCACCTaGATGCTTGCCAGCCCAGTC +
Preference number: 4 (lower is better)
Translates to: FLLSLSYREDLQGEVNIYNPTST*MLASPV
Trigger: GACTGGGCTGGCAAGCATCCAGGTGGACGTCGGGTT...ATATATATTAACCTCTCCCTGAAGGTCTTCTCTGTAACTGAGAGAAAGAAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CCA 90 bp TGGGATTCACATTCCTGGGACACTCATGTATGCTGCTTTTGCCAGTTAATTCTCGTGGTAATTATGGCGTaGCATTGTGGGAAAGAGGTG +
Preference number: 4 (lower is better)
Translates to: WDSHSWDTHVCCFCQLILVVIMA*HCGKEV
Trigger: CACCTCTTTCCCACAATGCCACGCCATAATTACCAC...GAGAATTAACTGGCAAAAGCAGCATACATGAGTGTCCCAGGAATGTGAATCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR GCA 90 bp TTTCTCTCAGTTACAGAGAAGACCTTCAGGGAGAGGTTAATATATATTCTTGGGATTTCCCGAGCCTGTTaGCCTTGCCATTTGCCTCCT +
Preference number: 4 (lower is better)
Translates to: FLSVTEKTFRERLIYILGISRAC*PCHLPP
Trigger: AGGAGGCAAATGGCAAGGGCAACAGGCTCGGGAAAT...CCCAAGAATATATATTAACCTCTCCCTGAAGGTCTTCTCTGTAACTGAGAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR GCA 90 bp CAATTCTCTTCTAAGAACAACTACACTGATTTCCAATGGGCTCTGTCAGAGATCTGTCTCTGGATCTCCTaGCAGGTGTACAGGTTGAGA +
Preference number: 4 (lower is better)
Translates to: QFSSKNNYTDFQWALSEICLWIS*QVYRLR
Trigger: TCTCAACCTGTACACCTGGCAGGAGATCCAGAGACA...GATCTCTGACAGAGCCCATTGGAAATCAGTGTAGTTGTTCTTAGAAGAGAATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR GCA 90 bp CAATTCTCTTCTAAGAACAACTACACTGATTTCCAATGGGCTCTGTCAGAGATCAAGATCTGGGCAAGGTaGAGAAAGAAGAACCGCAGG +
Preference number: 4 (lower is better)
Translates to: QFSSKNNYTDFQWALSEIKIWAR*RKKNRR
Trigger: CCTGCGGTTCTTCTTTCTGCACCTTGCCCAGATCTT...GATCTCTGACAGAGCCCATTGGAAATCAGTGTAGTTGTTCTTAGAAGAGAATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CCA 90 bp CAATTCTCTTCTAAGAACAACTACACTGATTTCCAATGGGCTCTGTCAGAGATCTCCAACCAGAAAGAGTaGGCCCACATCAATGTCTGG +
Preference number: 4 (lower is better)
Translates to: QFSSKNNYTDFQWALSEISNQKE*AHINVW
Trigger: CCAGACATTGATGTGGGCCCACTCTTTCTGGTTGGA...GATCTCTGACAGAGCCCATTGGAAATCAGTGTAGTTGTTCTTAGAAGAGAATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CCA 90 bp TCTCAGTTAATCAGAGAAAAGCCCATGCACAGCCATCACCCTCTTCAGAGACACACTGCTCATTTTCATTaGTATGTGACTCATCTGGGT +
Preference number: 4 (lower is better)
Translates to: SQLIREKPMHSHHPLQRHTAHFH*YVTHLG
Trigger: ACCCAGATGAGTCACATACCAATGAAAATGAGCAGT...GTGTCTCTGAAGAGGGTGATGGCTGTGCATGGGCTTTTCTCTGATTAACTGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR TCA 90 bp AATAAACAATTCTCTTCTAAGAACAACTACACTGATTTCCAATGGGCTCTGTCACACTGGTCTGCTTCCTaGCTGTGTCTCTGGATCTCC +
Preference number: 4 (lower is better)
Translates to: NKQFSSKNNYTDFQWALSHWSAS*LCLWIS
Trigger: GGAGATCCAGAGACACAGTCAGGAAGCAGACCAGTG...TGACAGAGCCCATTGGAAATCAGTGTAGTTGTTCTTAGAAGAGAATTGTTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CCA 90 bp CTTCAGGGAGAGGTTAATATATATTCTTGGGATTCACATTCCTGGGACACTCATTATGGCGTGGCATTGTaGGAAAGAGGTGGTGTTCAA +
Preference number: 4 (lower is better)
Translates to: LQGEVNIYSWDSHSWDTHYGVAL*ERGGVQ
Trigger: TTGAACACCACCTCTTTCCCACAATGCCACGCCATA...ATGAGTGTCCCAGGAATGTGAATCCCAAGAATATATATTAACCTCTCCCTGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
3UTR CAA 72 bp GGATTCACATTCCTGGGACACTCATGTATGCTGCTTTaGCCAGTTAATTCTCAGTTAATCAGAGAAAAGCCC +
Preference number: 4 (lower is better)
Translates to: GFTFLGHSCMLL*PVNSQLIREKP
Trigger: GGGCTTTTCTCTGATTAACTGAGAATTAACTGGCAAAAGCAGCATACATGAGTGTCCCAGGAATGTGAATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR GCA 90 bp CTTCAGGGAGAGGTTAATATATATTCTTGGGATTCACATTCCTGGGACACTCATTCACATTGTAAACCTTaGGATCAATCACCAGCCACT +
Preference number: 4 (lower is better)
Translates to: LQGEVNIYSWDSHSWDTHSHCKP*DQSPAT
Trigger: AGTGGCTGGTGATTGATCGCAAGGTTTACAATGTGA...ATGAGTGTCCCAGGAATGTGAATCCCAAGAATATATATTAACCTCTCCCTGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR GCA 90 bp TGGGATTCACATTCCTGGGACACTCATGTATGCTGCTTTTGCCAGTTAATTCTCATCTTCCACCAACTGTaGGTTTTTGTTTTTCTCTTG +
Preference number: 4 (lower is better)
Translates to: WDSHSWDTHVCCFCQLILIFHQL*VFVFLL
Trigger: CAAGAGAAAAACAAAAACGCACAGTTGGTGGAAGAT...GAGAATTAACTGGCAAAAGCAGCATACATGAGTGTCCCAGGAATGTGAATCCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR GCA 90 bp CTTCAGGGAGAGGTTAATATATATTCTTGGGATTCACATTCCTGGGACACTCATAAAGCTGCTGACCCATaGAATGTCCATCCAGTATTT +
Preference number: 4 (lower is better)
Translates to: LQGEVNIYSWDSHSWDTHKAADP*NVHPVF
Trigger: AAATACTGGATGGACATTGCATGGGTCAGCAGCTTT...ATGAGTGTCCCAGGAATGTGAATCCCAAGAATATATATTAACCTCTCCCTGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR TCA 90 bp TTTCTTCTTTCTCTCAGTTACAGAGAAGACCTTCAGGGAGAGGTTAATATATATGAATGTAAAAGCTGCTaGCCCATGCAATGTCCATCC +
Preference number: 4 (lower is better)
Translates to: FLLSLSYREDLQGEVNIYECKSC*PMQCPS
Trigger: GGATGGACATTGCATGGGTCAGCAGCTTTTACATTC...ATATATATTAACCTCTCCCTGAAGGTCTTCTCTGTAACTGAGAGAAAGAAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR GCA 90 bp AATAAACAATTCTCTTCTAAGAACAACTACACTGATTTCCAATGGGCTCTGTCACATGAGGAAGGGGAGTaGAACCATGTAGAAGTACAG +
Preference number: 4 (lower is better)
Translates to: NKQFSSKNNYTDFQWALSHEEGE*NHVEVQ
Trigger: CTGTACTTCTACATGGTTGCACTCCCCTTCCTCATG...TGACAGAGCCCATTGGAAATCAGTGTAGTTGTTCTTAGAAGAGAATTGTTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CCA 90 bp ATATATTCTTGGGATTCACATTCCTGGGACACTCATGTATGCTGCTTTTGCCAGAATTTGTGCATCAGATaGTTCCACTTGGACTTCTTA +
Preference number: 4 (lower is better)
Translates to: IYSWDSHSWDTHVCCFCQNLCIR*FHLDFL
Trigger: TAAGAAGTCCAAGTGGAACCATCTGATGCACAAATT...CTGGCAAAAGCAGCATACATGAGTGTCCCAGGAATGTGAATCCCAAGAATATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR GCA 90 bp CTTCAGGGAGAGGTTAATATATATTCTTGGGATTCACATTCCTGGGACACTCATCACATTACAAATTTGTaGATCAGATGGTTCCACTTG +
Preference number: 4 (lower is better)
Translates to: LQGEVNIYSWDSHSWDTHHITNL*IRWFHL
Trigger: CAAGTGGAACCATCTGATGCACAAATTTGTAATGTG...ATGAGTGTCCCAGGAATGTGAATCCCAAGAATATATATTAACCTCTCCCTGAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CCA 90 bp GAGAGGTTAATATATATTCTTGGGATTCACATTCCTGGGACACTCATGTATGCTCTTGGGGTAGATATTTaGTTTTACATGATGCTGGAA +
Preference number: 4 (lower is better)
Translates to: ERLIYILGIHIPGTLMYALGVDI*FYMMLE
Trigger: TTCCAGCATCATGTAAAACCAAATATCTACCCCAAG...AGCATACATGAGTGTCCCAGGAATGTGAATCCCAAGAATATATATTAACCTCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR GCA 90 bp TTTCTTCTTTCTCTCAGTTACAGAGAAGACCTTCAGGGAGAGGTTAATATATATCGTGGTTCTCTTCACTaGTCATTTTCATTGGTATGT +
Preference number: 4 (lower is better)
Translates to: FLLSLSYREDLQGEVNIYRGSLH*SFSLVC
Trigger: ACATACCAATGAAAATGAGCAGTGAAGAGAACCACG...ATATATATTAACCTCTCCCTGAAGGTCTTCTCTGTAACTGAGAGAAAGAAGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CCA 90 bp TTTCTTCTTTCTCTCAGTTACAGAGAAGACCTTCAGGGAGAGGTTAATATATATCAAAGGCCTTCAATATaGGCTTATTTATATACTGCA +
Preference number: 4 (lower is better)
Translates to: FLLSLSYREDLQGEVNIYQRPSI*AYLYTA
Trigger: TGCAGTATATAAATAAGCCCATATTGAAGGCCTTTG...ATATATATTAACCTCTCCCTGAAGGTCTTCTCTGTAACTGAGAGAAAGAAGAAA
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS GCA 90 bp GTCCACCTGGATGCTTGCCAGCCCAGTCAGTCACATTGTAAACCTTaGGATCAATCACCAGCCACTGGTCTGCTTCCTGACTGTGTCTCT +
Preference number: 5 (lower is better)
Translates to: VHLDACQPSQSHCKP*DQSPATGLLPDCVS
Trigger: AGAGACACAGTCAGGAAGCAGACCAGTGGCTGGTGATTGATCGCAAGGTTTACAATGTGACTGACTGGGCTGGCAAGCATCCAGGTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp GTTAATTCTCAGTTAATCAGAGAAAAGCCCATGCACAGCCATCACCCTCTTCAGCGTCCACCTGGATGCTaGCCAGCCCAGTCAGTCACA +
Preference number: 5 (lower is better)
Translates to: VNSQLIREKPMHSHHPLQRPPGC*PAQSVT
Trigger: TGTGACTGACTGGGCTGGCAAGCATCCAGGTGGACG...CTGAAGAGGGTGATGGCTGTGCATGGGCTTTTCTCTGATTAACTGAGAATTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CCA 90 bp CTGAGTGCTGAGCCAGTCGTGGTTCTCTTCACTGCTCATTTTCATTaGTATGTGACTCATCTGGGTAACGTAAGCAATCCAGGGGCTCTC +
Preference number: 5 (lower is better)
Translates to: LSAEPVVVLFTAHFH*YVTHLGNVSNPGAL
Trigger: GAGAGCCCCTGGATTGCTTACGTTACCCAGATGAGTCACATACCAATGAAAATGAGCAGTGAAGAGAACCACGACTGGCTCAGCACTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS TCA 90 bp TCAAGATCTGGGCAAGGTGCAGAAAGAAGAACCGCAGGTTGGCACTaGACATGTTCATGGCCTCTAACGTCTTGCGCAATTCACGGAAAT +
Preference number: 5 (lower is better)
Translates to: SRSGQGAERRTAGWH*TCSWPLTSCAIHGN
Trigger: ATTTCCGTGAATTGCGCAAGACGTTAGAGGCCATGAACATGTTCAGTGCCAACCTGCGGTTCTTCTTTCTGCACCTTGCCCAGATCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS GCA 90 bp AGTATTAGCCATGCTGAGATTTCCAAGATCAAGATCTGGGCAAGGTaGAGAAAGAAGAACCGCAGGTTGGCACTGAACATGTTCATGGCC +
Preference number: 5 (lower is better)
Translates to: SISHAEISKIKIWAR*RKKNRRLALNMFMA
Trigger: GGCCATGAACATGTTCAGTGCCAACCTGCGGTTCTTCTTTCTGCACCTTGCCCAGATCTTGATCTTGGAAATCTCAGCATGGCTAATACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp CAATTCTCTTCTAAGAACAACTACACTGATTTCCAATGGGCTCTGTCAGAGATCCCGAGCCTGTTGCCCTaGCCATTTGCCTCCTGCTTT +
Preference number: 5 (lower is better)
Translates to: QFSSKNNYTDFQWALSEIPSLLP*PFASCF
Trigger: AAAGCAGGAGGCAAATGGCAAGGGCAACAGGCTCGG...GATCTCTGACAGAGCCCATTGGAAATCAGTGTAGTTGTTCTTAGAAGAGAATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp TCTCAGTTAATCAGAGAAAAGCCCATGCACAGCCATCACCCTCTTCAGAGACACAAGAAGAACCGCAGGTaGGCACTGAACATGTTCATG +
Preference number: 5 (lower is better)
Translates to: SQLIREKPMHSHHPLQRHKKNRR*ALNMFM
Trigger: CATGAACATGTTCAGTGCCAACCTGCGGTTCTTCTT...GTGTCTCTGAAGAGGGTGATGGCTGTGCATGGGCTTTTCTCTGATTAACTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CCA 90 bp AGGCTGAGTATCTCCAACCAGAAAGAGTGGGCCCACATCAATGTCTaGATCCTTGGGGTAGATATTTGGTTTTACATGATGCTGGAAGTG +
Preference number: 5 (lower is better)
Translates to: RLSISNQKEWAHINV*ILGVDIWFYMMLEV
Trigger: CACTTCCAGCATCATGTAAAACCAAATATCTACCCCAAGGATCCAGACATTGATGTGGGCCCACTCTTTCTGGTTGGAGATACTCAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CCA 90 bp AAATGGTGTAGTATTAGCCATGCTGAGATTTCCAAGATCAAGATCTaGGCAAGGTGCAGAAAGAAGAACCGCAGGTTGGCACTGAACATG +
Preference number: 5 (lower is better)
Translates to: KWCSISHAEISKIKI*ARCRKKNRRLALNM
Trigger: CATGTTCAGTGCCAACCTGCGGTTCTTCTTTCTGCACCTTGCCCAGATCTTGATCTTGGAAATCTCAGCATGGCTAATACTACACCATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp TCTCAGTTAATCAGAGAAAAGCCCATGCACAGCCATCACCCTCTTCAGAGACACGAGGTGGTGTTCAATTaGGAAGTTCAAATGTCCAGT +
Preference number: 5 (lower is better)
Translates to: SQLIREKPMHSHHPLQRHEVVFN*EVQMSS
Trigger: ACTGGACATTTGAACTTCCAAATTGAACACCACCTC...GTGTCTCTGAAGAGGGTGATGGCTGTGCATGGGCTTTTCTCTGATTAACTGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp TGGGATTCACATTCCTGGGACACTCATGTATGCTGCTTTTGCCAGTTAATTCTCAATTATGGCGTGGCATaGTGGGAAAGAGGTGGTGTT +
Preference number: 5 (lower is better)
Translates to: WDSHSWDTHVCCFCQLILNYGVA*WERGGV
Trigger: AACACCACCTCTTTCCCACAATGCCACGCCATAATT...GAGAATTAACTGGCAAAAGCAGCATACATGAGTGTCCCAGGAATGTGAATCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CCA 90 bp CTTCTTGCCATACTTTATAGGCTGAGTATCTCCAACCAGAAAGAGTaGGCCCACATCAATGTCTGGATCCTTGGGGTAGATATTTGGTTT +
Preference number: 5 (lower is better)
Translates to: LLAILYRLSISNQKE*AHINVWILGVDIWF
Trigger: AAACCAAATATCTACCCCAAGGATCCAGACATTGATGTGGGCCCACTCTTTCTGGTTGGAGATACTCAGCCTATAAAGTATGGCAAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp TCTCAGTTAATCAGAGAAAAGCCCATGCACAGCCATCACCCTCTTCAGAGACACGTTTTTGTTTTTCTCTaGGCTTGGTTCTTCTGGAGA +
Preference number: 5 (lower is better)
Translates to: SQLIREKPMHSHHPLQRHVFVFL*AWFFWR
Trigger: TCTCCAGAAGAACCAAGCCAAGAGAAAAACAAAAAC...GTGTCTCTGAAGAGGGTGATGGCTGTGCATGGGCTTTTCTCTGATTAACTGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CCA 90 bp TATCTCCAACCAGAAAGAGTGGGCCCACATCAATGTCTGGATCCTTaGGGTAGATATTTGGTTTTACATGATGCTGGAAGTGTCGATAAT +
Preference number: 5 (lower is better)
Translates to: YLQPERVGPHQCLDP*GRYLVLHDAGSVDN
Trigger: ATTATCGACACTTCCAGCATCATGTAAAACCAAATATCTACCCCAAGGATCCAGACATTGATGTGGGCCCACTCTTTCTGGTTGGAGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp GAGAGGTTAATATATATTCTTGGGATTCACATTCCTGGGACACTCATGTATGCTCCAACAAGGCTCTCATaGTGCTCAAGCTTTTCCTCC +
Preference number: 5 (lower is better)
Translates to: ERLIYILGIHIPGTLMYAPTRLS*CSSFSS
Trigger: GGAGGAAAAGCTTGAGCACAATGAGAGCCTTGTTGG...AGCATACATGAGTGTCCCAGGAATGTGAATCCCAAGAATATATATTAACCTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS TCA 90 bp TGGTTTTACATGATGCTGGAAGTGTCGATAATTCCACCAATCAGCTaGCAGGCCCTTGAGATGACACATTACAAATTTGTGCATCAGATG +
Preference number: 5 (lower is better)
Translates to: WFYMMLEVSIIPPIS*QALEMTHYKFVHQM
Trigger: CATCTGATGCACAAATTTGTAATGTGTCATCTCAAGGGCCTGTCAGCTGATTGGTGGAATTATCGACACTTCCAGCATCATGTAAAACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS GCA 90 bp AGGGCCAAATGTGATGAAATAACGAATGTAAAAGCTGCTGACCCATaGAATGTCCATCCAGTATTTTCGAAGGTACATCACTTGCATGGA +
Preference number: 5 (lower is better)
Translates to: RAKCDEITNVKAADP*NVHPVFSKVHHLHG
Trigger: TCCATGCAAGTGATGTACCTTCGAAAATACTGGATGGACATTGCATGGGTCAGCAGCTTTTACATTCGTTATTTCATCACATTTGGCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp GAGAGGTTAATATATATTCTTGGGATTCACATTCCTGGGACACTCATGTATGCTTGTTGCCCTTGCCATTaGCCTCCTGCTTTTCATAGA +
Preference number: 5 (lower is better)
Translates to: ERLIYILGIHIPGTLMYACCPCH*PPAFHR
Trigger: TCTATGAAAAGCAGGAGGCAAATGGCAAGGGCAACA...AGCATACATGAGTGTCCCAGGAATGTGAATCCCAAGAATATATATTAACCTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp CTTCAGGGAGAGGTTAATATATATTCTTGGGATTCACATTCCTGGGACACTCATCACTGCTCATTTTCATaGGTATGTGACTCATCTGGG +
Preference number: 5 (lower is better)
Translates to: LQGEVNIYSWDSHSWDTHHCSFS*VCDSSG
Trigger: CCCAGATGAGTCACATACCAATGAAAATGAGCAGTG...ATGAGTGTCCCAGGAATGTGAATCCCAAGAATATATATTAACCTCTCCCTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp TTTCTCTCAGTTACAGAGAAGACCTTCAGGGAGAGGTTAATATATATTCTTGGGTACTGCAATCCATGCTaGGCACAAAGTGACTTCACC +
Preference number: 5 (lower is better)
Translates to: FLSVTEKTFRERLIYILGYCNPC*AQSDFT
Trigger: GGTGAAGTCACTTTGTGCCAAGCATGGATTGCAGTA...CCCAAGAATATATATTAACCTCTCCCTGAAGGTCTTCTCTGTAACTGAGAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CCA 90 bp AGGAGAAAGGAAATAAGTATTGTAACAAGCCAGCTGCTGCCAAAATaGTGTAGTATTAGCCATGCTGAGATTTCCAAGATCAAGATCTGG +
Preference number: 5 (lower is better)
Translates to: RRKEISIVTSQLLPK*CSISHAEISKIKIW
Trigger: CCAGATCTTGATCTTGGAAATCTCAGCATGGCTAATACTACACCATTTTGGCAGCAGCTGGCTTGTTACAATACTTATTTCCTTTCTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp CTTCAGGGAGAGGTTAATATATATTCTTGGGATTCACATTCCTGGGACACTCATTGTTTTTCTCTTGGCTaGGTTCTTCTGGAGAAAGTT +
Preference number: 5 (lower is better)
Translates to: LQGEVNIYSWDSHSWDTHCFSLG*VLLEKV
Trigger: AACTTTCTCCAGAAGAACCAAGCCAAGAGAAAAACA...ATGAGTGTCCCAGGAATGTGAATCCCAAGAATATATATTAACCTCTCCCTGAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp TTTCTCTCAGTTACAGAGAAGACCTTCAGGGAGAGGTTAATATATATTCTTGGGACCAACTGTGCGTTTTaGTTTTTCTCTTGGCTTGGT +
Preference number: 5 (lower is better)
Translates to: FLSVTEKTFRERLIYILGTNCAF*FFSWLG
Trigger: ACCAAGCCAAGAGAAAAACAAAAACGCACAGTTGGT...CCCAAGAATATATATTAACCTCTCCCTGAAGGTCTTCTCTGTAACTGAGAGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp GAGAGGTTAATATATATTCTTGGGATTCACATTCCTGGGACACTCATGTATGCTCCAGTGAACCAGTCATaGAAAAAGGACTGTTCAATA +
Preference number: 5 (lower is better)
Translates to: ERLIYILGIHIPGTLMYAPVNQS*KKDCSI
Trigger: TATTGAACAGTCCTTTTTCAATGACTGGTTCACTGG...AGCATACATGAGTGTCCCAGGAATGTGAATCCCAAGAATATATATTAACCTCTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp AATAAACAATTCTCTTCTAAGAACAACTACACTGATTTCCAATGGGCTCTGTCACATCACTTGCATGGATaGCAAATTAAAGTAGACAGG +
Preference number: 5 (lower is better)
Translates to: NKQFSSKNNYTDFQWALSHHLHG*QIKVDR
Trigger: CCTGTCTACTTTAATTTGCAATCCATGCAAGTGATG...TGACAGAGCCCATTGGAAATCAGTGTAGTTGTTCTTAGAAGAGAATTGTTTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS-3UTR CAA 90 bp AATAAACAATTCTCTTCTAAGAACAACTACACTGATTTCCAATGGGCTCTGTCAGGGCTCTCAATAAACTaGACCAAATATATGAGCAAC +
Preference number: 5 (lower is better)
Translates to: NKQFSSKNNYTDFQWALSGLSIN*TKYMSN
Trigger: GTTGCTCATATATTTGGTCAAGTTTATTGAGAGCCC...TGACAGAGCCCATTGGAAATCAGTGTAGTTGTTCTTAGAAGAGAATTGTTTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CCA 72 bp TTGCCCAGCATAGTGGTTGAGAACCCGACGTCCACCTaGATGCTTGCCAGCCCAGTCAGTCACATTGTAAAC +
Preference number: 6 (lower is better)
Translates to: LPSIVVENPTST*MLASPVSHIVN
Trigger: GTTTACAATGTGACTGACTGGGCTGGCAAGCATCCAGGTGGACGTCGGGTTCTCAACCACTATGCTGGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS TCA 72 bp AAAAAGGACTGTTCAATATTACAGGTGGCCACAACCTaGGTGCTGAGCCAGTCGTGGTTCTCTTCACTGCTC +
Preference number: 6 (lower is better)
Translates to: KKDCSILQVATT*VLSQSWFSSLL
Trigger: GAGCAGTGAAGAGAACCACGACTGGCTCAGCACTCAGGTTGTGGCCACCTGTAATATTGAACAGTCCTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS GCA 72 bp CATGCTGAGATTTCCAAGATCAAGATCTGGGCAAGGTaGAGAAAGAAGAACCGCAGGTTGGCACTGAACATG +
Preference number: 6 (lower is better)
Translates to: HAEISKIKIWAR*RKKNRRLALNM
Trigger: CATGTTCAGTGCCAACCTGCGGTTCTTCTTTCTGCACCTTGCCCAGATCTTGATCTTGGAAATCTCAGCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CAA 90 bp GCTGACCCATGCAATGTCCATCCAGTATTTTCGAAGGTACATCACTaGCATGGATTGCAAATTAAAGTAGACAGGCATGAGGAAGGGGAG +
Preference number: 6 (lower is better)
Translates to: ADPCNVHPVFSKVHH*HGLQIKVDRHEEGE
Trigger: CTCCCCTTCCTCATGCCTGTCTACTTTAATTTGCAATCCATGCAAGTGATGTACCTTCGAAAATACTGGATGGACATTGCATGGGTCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CCA 72 bp ATACTTTATAGGCTGAGTATCTCCAACCAGAAAGAGTaGGCCCACATCAATGTCTGGATCCTTGGGGTAGAT +
Preference number: 6 (lower is better)
Translates to: ILYRLSISNQKE*AHINVWILGVD
Trigger: ATCTACCCCAAGGATCCAGACATTGATGTGGGCCCACTCTTTCTGGTTGGAGATACTCAGCCTATAAAGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CCA 72 bp GAGCCAGTCGTGGTTCTCTTCACTGCTCATTTTCATTaGTATGTGACTCATCTGGGTAACGTAAGCAATCCA +
Preference number: 6 (lower is better)
Translates to: EPVVVLFTAHFH*YVTHLGNVSNP
Trigger: TGGATTGCTTACGTTACCCAGATGAGTCACATACCAATGAAAATGAGCAGTGAAGAGAACCACGACTGGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS GCA 72 bp TTGCAAATTAAAGTAGACAGGCATGAGGAAGGGGAGTaGAACCATGTAGAAGTACAGGTGCTGCTTCTCATA +
Preference number: 6 (lower is better)
Translates to: LQIKVDRHEEGE*NHVEVQVLLLI
Trigger: TATGAGAAGCAGCACCTGTACTTCTACATGGTTGCACTCCCCTTCCTCATGCCTGTCTACTTTAATTTGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS GCA 72 bp GCCTTCAATATGGGCTTATTTATATACTGCAATCCATaGTTGGCACAAAGTGACTTCACCAGAGGTGCCACT +
Preference number: 6 (lower is better)
Translates to: AFNMGLFIYCNP*LAQSDFTRGAT
Trigger: AGTGGCACCTCTGGTGAAGTCACTTTGTGCCAAGCATGGATTGCAGTATATAAATAAGCCCATATTGAAGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CCA 72 bp ATCTCCAACCAGAAAGAGTGGGCCCACATCAATGTCTaGATCCTTGGGGTAGATATTTGGTTTTACATGATG +
Preference number: 6 (lower is better)
Translates to: ISNQKEWAHINV*ILGVDIWFYMM
Trigger: CATCATGTAAAACCAAATATCTACCCCAAGGATCCAGACATTGATGTGGGCCCACTCTTTCTGGTTGGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CAA 72 bp CATCCAGTATTTTCGAAGGTACATCACTTGCATGGATaGCAAATTAAAGTAGACAGGCATGAGGAAGGGGAG +
Preference number: 6 (lower is better)
Translates to: HPVFSKVHHLHG*QIKVDRHEEGE
Trigger: CTCCCCTTCCTCATGCCTGTCTACTTTAATTTGCAATCCATGCAAGTGATGTACCTTCGAAAATACTGGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CCA 72 bp TCAATATGGGCTTATTTATATACTGCAATCCATGCTTaGCACAAAGTGACTTCACCAGAGGTGCCACTTTGT +
Preference number: 6 (lower is better)
Translates to: SIWAYLYTAIHA*HKVTSPEVPLC
Trigger: ACAAAGTGGCACCTCTGGTGAAGTCACTTTGTGCCAAGCATGGATTGCAGTATATAAATAAGCCCATATTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CAA 72 bp TTCAATATGGGCTTATTTATATACTGCAATCCATGCTaGGCACAAAGTGACTTCACCAGAGGTGCCACTTTG +
Preference number: 6 (lower is better)
Translates to: FNMGLFIYCNPC*AQSDFTRGATL
Trigger: CAAAGTGGCACCTCTGGTGAAGTCACTTTGTGCCAAGCATGGATTGCAGTATATAAATAAGCCCATATTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS GCA 72 bp TGTGATGAAATAACGAATGTAAAAGCTGCTGACCCATaGAATGTCCATCCAGTATTTTCGAAGGTACATCAC +
Preference number: 6 (lower is better)
Translates to: CDEITNVKAADP*NVHPVFSKVHH
Trigger: GTGATGTACCTTCGAAAATACTGGATGGACATTGCATGGGTCAGCAGCTTTTACATTCGTTATTTCATCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2
CDS CAA 72 bp TGCAATGTCCATCCAGTATTTTCGAAGGTACATCACTaGCATGGATTGCAAATTAAAGTAGACAGGCATGAG +
Preference number: 6 (lower is better)
Translates to: CNVHPVFSKVHH*HGLQIKVDRHE
Trigger: CTCATGCCTGTCTACTTTAATTTGCAATCCATGCAAGTGATGTACCTTCGAAAATACTGGATGGACATTGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099923.2