Pregenerated sensors for ERF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040857Ensembl transcript IDs: ENSMUST00000045847.15, ENSMUST00000116343.3
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGAACCAGGAACAGCAGGGCCTTGTTAAGGGTCCTAGAGGCAGATaGGATGATAAGGAACCAGTCAAGGAAAGACAAGACTACGGAAAG | + |
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Preference number: 1 (lower is better) Translates to: ENQEQQGLVKGPRGR*DDKEPVKERQDYGK Trigger: CTTTCCGTAGTCTTGTCTTTCCTTGACTGGTTCCTTATCATCCCATCTGCCTCTAGGACCCTTAACAAGGCCCTGCTGTTCCTGGTTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR CCA 90 bp | TTAACTTTGAACTTCCTACCTCAAGTGCTGGTGGGATTACAGGTGTaGACCACTAAAGCCTCCTCCGAGTACATTGGAGTAAGATGGGGA | + |
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Preference number: 1 (lower is better) Translates to: LTLNFLPQVLVGLQV*TTKASSEYIGVRWG Trigger: TCCCCATCTTACTCCAATGTACTCGGAGGAGGCTTTAGTGGTCCACACCTGTAATCCCACCAGCACTTGAGGTAGGAAGTTCAAAGTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR CCA 90 bp | GCAGGGGGTGGGCGTGAAGGGACTGGACCAGTACTGGGTGGTGTAGGGAACAGGGGGAGGGGCATGGATTaGGGTGGGGGAGGACAAGGT | + |
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Preference number: 2 (lower is better) Translates to: AGGGREGTGPVLGGVGNRGRGMD*GGGGQG Trigger: ACCTTGTCCTCCCCCACCCCAATCCATGCCCCTCCC...CCTGTTCCCTACACCACCCAGTACTGGTCCAGTCCCTTCACGCCCACCCCCTGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR TCA 90 bp | CGAGCGTCTCTCCAGCCCAAGGGCTGCACTTCAGGACACTACAGGCCTCCCGGTCTCCCCAGGCCTAGTTaGCCTGTTCAGGTGGAGTCA | + |
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Preference number: 2 (lower is better) Translates to: RASLQPKGCTSGHYRPPGLPRPS*PVQVES Trigger: TGACTCCACCTGAACAGGTCAACTAGGCCTGGGGAG...ACCGGGAGGCCTGTAGTGTCCTGAAGTGCAGCCCTTGGGCTGGAGAGACGCTCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR GCA 90 bp | GCAGGGGGTGGGCGTGAAGGGACTGGACCAGTACTGGGTGGTGTAGGGAACAGGTGTCCCTCCTGCCCCTaGTGCAACCTTGTGGGGTAT | + |
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Preference number: 2 (lower is better) Translates to: AGGGREGTGPVLGGVGNRCPSCP*CNLVGY Trigger: ATACCCCACAAGGTTGCAGCAGGGGCAGGAGGGACA...CCTGTTCCCTACACCACCCAGTACTGGTCCAGTCCCTTCACGCCCACCCCCTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR CCA 90 bp | CGAGCGTCTCTCCAGCCCAAGGGCTGCACTTCAGGACACTACAGGCCTCCCGGTACTTGTAGAGATTTGTaGCCCACAGGCGGCACCCCT | + |
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Preference number: 2 (lower is better) Translates to: RASLQPKGCTSGHYRPPGTCRDL*PTGGTP Trigger: AGGGGTGCCGCCTGTGGGCCACAAATCTCTACAAGT...ACCGGGAGGCCTGTAGTGTCCTGAAGTGCAGCCCTTGGGCTGGAGAGACGCTCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR CCA 90 bp | GCCTTCTGGCCACAGATGGGAAGCAGGTGTCTAGACCTGTCCAGAATTAAGCCAGGCACTCACAGCCCCTaGAGGGGCAAGAAAGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: AFWPQMGSRCLDLSRIKPGTHSP*RGKKGR Trigger: CCTGCCTTTCTTGCCCCTCCAGGGGCTGTGAGTGCC...TGGCTTAATTCTGGACAGGTCTAGACACCTGCTTCCCATCTGTGGCCAGAAGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR GCA 90 bp | GCCTTCTGGCCACAGATGGGAAGCAGGTGTCTAGACCTGTCCAGAATTAAGCCACCCTCCTGCCCCTGCTaGAACCTTGTGGGGTATAAG | + |
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Preference number: 2 (lower is better) Translates to: AFWPQMGSRCLDLSRIKPPSCPC*NLVGYK Trigger: CTTATACCCCACAAGGTTGCAGCAGGGGCAGGAGGG...TGGCTTAATTCTGGACAGGTCTAGACACCTGCTTCCCATCTGTGGCCAGAAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR CCA 90 bp | GCCTTCTGGCCACAGATGGGAAGCAGGTGTCTAGACCTGTCCAGAATTAAGCCATCTCTGTTGATACTGTaGCTGCGCCCAGCACCTAGG | + |
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Preference number: 2 (lower is better) Translates to: AFWPQMGSRCLDLSRIKPSLLIL*LRPAPR Trigger: CCTAGGTGCTGGGCGCAGCCACAGTATCAACAGAGA...TGGCTTAATTCTGGACAGGTCTAGACACCTGCTTCCCATCTGTGGCCAGAAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR CCA 90 bp | CGAGCGTCTCTCCAGCCCAAGGGCTGCACTTCAGGACACTACAGGCCTCCCGGTTACATTGGAGTAAGATaGGGAGGATTCAAAATACGG | + |
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Preference number: 2 (lower is better) Translates to: RASLQPKGCTSGHYRPPGYIGVR*GGFKIR Trigger: CCGTATTTTGAATCCTCCCCATCTTACTCCAATGTA...ACCGGGAGGCCTGTAGTGTCCTGAAGTGCAGCCCTTGGGCTGGAGAGACGCTCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR GCA 90 bp | TCTATGCCAATTCTGAGTGGTTGCCAGAAGCTGCCTCCCCTGGAACTGAAGCTGCCCCCACCACCACTTTaGCCAGAACTTAGAAACCCA | + |
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Preference number: 2 (lower is better) Translates to: SMPILSGCQKLPPLELKLPPPPL*PELRNP Trigger: TGGGTTTCTAAGTTCTGGGCAAAGTGGTGGTGGGGG...CAGCTTCAGTTCCAGGGGAGGCAGCTTCTGGCAACCACTCAGAATTGGCATAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR GCA 90 bp | TCTATGCCAATTCTGAGTGGTTGCCAGAAGCTGCCTCCCCTGGAACTGAAGCTGAAAATTTGTCCCTCCTaGCCCTGCTGCAACCTTGTG | + |
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Preference number: 2 (lower is better) Translates to: SMPILSGCQKLPPLELKLKICPS*PCCNLV Trigger: CACAAGGTTGCAGCAGGGGCAGGAGGGACAAATTTT...CAGCTTCAGTTCCAGGGGAGGCAGCTTCTGGCAACCACTCAGAATTGGCATAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR CCA 90 bp | AAGGAACCAGTCAAGGAAAGACAAGACTACGGAAAGCCAGAAACCTTAATCATCTGGAGTCAGGCCTTCTaGCCACAGATGGGAAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: KEPVKERQDYGKPETLIIWSQAF*PQMGSR Trigger: CCTGCTTCCCATCTGTGGCCAGAAGGCCTGACTCCA...GATGATTAAGGTTTCTGGCTTTCCGTAGTCTTGTCTTTCCTTGACTGGTTCCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR CCA 90 bp | GTCAAGGAAAGACAAGACTACGGAAAGCCAGAAACCTTAATCATCAGCTCTGAGTGGACCAGTACTGGGTaGTGTAGGGAACAGGCACTT | + |
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Preference number: 2 (lower is better) Translates to: VKERQDYGKPETLIISSEWTSTG*CREQAL Trigger: AAGTGCCTGTTCCCTACACCACCCAGTACTGGTCCA...CTCAGAGCTGATGATTAAGGTTTCTGGCTTTCCGTAGTCTTGTCTTTCCTTGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR CAA 90 bp | CGAGCGTCTCTCCAGCCCAAGGGCTGCACTTCAGGACACTACAGGCCTCCCGGTGGCACTTGTAGAGATTaGTGGCCCACAGGCGGCACC | + |
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Preference number: 3 (lower is better) Translates to: RASLQPKGCTSGHYRPPGGTCRD*WPTGGT Trigger: GGTGCCGCCTGTGGGCCACAAATCTCTACAAGTGCC...ACCGGGAGGCCTGTAGTGTCCTGAAGTGCAGCCCTTGGGCTGGAGAGACGCTCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR CAA 90 bp | CACAGAGCCGAGCGTCTCTCCAGCCCAAGGGCTGCACTTCAGGACACTACAGGCAGAGGGGCTTCCAGTTaGGTTTTGAGAGACAACCCC | + |
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Preference number: 3 (lower is better) Translates to: HRAERLSSPRAALQDTTGRGASS*VLRDNP Trigger: GGGGTTGTCTCTCAAAACCAAACTGGAAGCCCCTCT...GCCTGTAGTGTCCTGAAGTGCAGCCCTTGGGCTGGAGAGACGCTCGGCTCTGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR CCA 72 bp | GCCAATAACTCCCCAGGCCTAGTTGACCTGTTCAGGTaGAGTCAGGCCTTCTGGCCACAGATGGGAAGCAGG | + |
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Preference number: 3 (lower is better) Translates to: ANNSPGLVDLFR*SQAFWPQMGSR Trigger: CCTGCTTCCCATCTGTGGCCAGAAGGCCTGACTCCACCTGAACAGGTCAACTAGGCCTGGGGAGTTATTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR GCA 72 bp | TGTGAGCTGTCACGAGCCACCCCACATGAGGTACTCTaGAACAGACGGAGGTTCTCCGAAGAGCAGAAGCAC | + |
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Preference number: 3 (lower is better) Translates to: CELSRATPHEVL*NRRRFSEEQKH Trigger: GTGCTTCTGCTCTTCGGAGAACCTCCGTCTGTTGCAGAGTACCTCATGTGGGGTGGCTCGTGACAGCTCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR CAA 90 bp | TCTATGCCAATTCTGAGTGGTTGCCAGAAGCTGCCTCCCCTGGAACTGAAGCTGAGAGCAGAAGCACCCTaGAACACAGAGCCGAGCGTC | + |
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Preference number: 3 (lower is better) Translates to: SMPILSGCQKLPPLELKLRAEAP*NTEPSV Trigger: GACGCTCGGCTCTGTGTTCAAGGGTGCTTCTGCTCT...CAGCTTCAGTTCCAGGGGAGGCAGCTTCTGGCAACCACTCAGAATTGGCATAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR-3UTR CAA 90 bp | CACGAGCCACCCCACATGAGGTACTCTGCAACAGACGGAGGTTCTCCGAAGAGCAAAAAGTTCCTGGGTTaGAAGGCCAAAGCCTCTGTT | + |
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Preference number: 3 (lower is better) Translates to: HEPPHMRYSATDGGSPKSKKFLG*KAKASV Trigger: AACAGAGGCTTTGGCCTTCAAACCCAGGAACTTTTT...GCTCTTCGGAGAACCTCCGTCTGTTGCAGAGTACCTCATGTGGGGTGGCTCGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR CCA 72 bp | AACTTCCTACCTCAAGTGCTGGTGGGATTACAGGTGTaGACCACTAAAGCCTCCTCCGAGTACATTGGAGTA | + |
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Preference number: 3 (lower is better) Translates to: NFLPQVLVGLQV*TTKASSEYIGV Trigger: TACTCCAATGTACTCGGAGGAGGCTTTAGTGGTCCACACCTGTAATCCCACCAGCACTTGAGGTAGGAAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | CACAGAGCCGAGCGTCTCTCCAGCCCAAGGGCTGCACTTCAGGACACTACAGGCCTCCGGGCTCTGGCTTaGGGGGTGCAGGCGGGGCAC | + |
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Preference number: 4 (lower is better) Translates to: HRAERLSSPRAALQDTTGLRALA*GVQAGH Trigger: GTGCCCCGCCTGCACCCCCCAAGCCAGAGCCCGGAG...GCCTGTAGTGTCCTGAAGTGCAGCCCTTGGGCTGGAGAGACGCTCGGCTCTGTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | GCAGGGGGTGGGCGTGAAGGGACTGGACCAGTACTGGGTGGTGTAGGGAACAGGGGGCACCACCAGCCCTaGGTAGTGCAGGAAGGCGCG | + |
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Preference number: 4 (lower is better) Translates to: AGGGREGTGPVLGGVGNRGHHQP*VVQEGA Trigger: CGCGCCTTCCTGCACTACCCAGGGCTGGTGGTGCCC...CCTGTTCCCTACACCACCCAGTACTGGTCCAGTCCCTTCACGCCCACCCCCTGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR GCA 90 bp | GCCAATTCTGAGTGGTTGCCAGAAGCTGCCTCCCCTGGAACTGAAGCTGTGAGCCGGCGGGGTCTCCGGTaGCATGGGCGGCAGTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: ANSEWLPEAASPGTEAVSRRGLR*HGRQWA Trigger: TGCCCACTGCCGCCCATGGCACCGGAGACCCCGCCG...GCTCACAGCTTCAGTTCCAGGGGAGGCAGCTTCTGGCAACCACTCAGAATTGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR GCA 90 bp | CACGAGCCACCCCACATGAGGTACTCTGCAACAGACGGAGGTTCTCCGAAGAGCTCTCCAGCTGCCCGCTaGCGGCGTCCTAGCGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: HEPPHMRYSATDGGSPKSSPAAR*RRPSGG Trigger: ACCCCCGCTAGGACGCCGGCAGCGGGCAGCTGGAGA...GCTCTTCGGAGAACCTCCGTCTGTTGCAGAGTACCTCATGTGGGGTGGCTCGTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | GCAGGGGGTGGGCGTGAAGGGACTGGACCAGTACTGGGTGGTGTAGGGAACAGGGGCTCCACCTTAATCTaGGGTGGTGGCGGTGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: AGGGREGTGPVLGGVGNRGSTLI*GGGGGG Trigger: TCCCCCACCGCCACCACCCCAGATTAAGGTGGAGCC...CCTGTTCCCTACACCACCCAGTACTGGTCCAGTCCCTTCACGCCCACCCCCTGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | GCAGGGGGTGGGCGTGAAGGGACTGGACCAGTACTGGGTGGTGTAGGGAACAGGTGGGCTGTGGCGTGCTaGAGGTCAGAGCTCACCCGT | + |
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Preference number: 4 (lower is better) Translates to: AGGGREGTGPVLGGVGNRWAVAC*RSELTR Trigger: ACGGGTGAGCTCTGACCTCCAGCACGCCACAGCCCA...CCTGTTCCCTACACCACCCAGTACTGGTCCAGTCCCTTCACGCCCACCCCCTGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR GCA 90 bp | GGAACAGGCACTTGTAGAGATTTGTGGCCCACAGGCGGCACCCCTCACCTTCCTAGGGCCAGGTGGTCGTaGCCTGGGGTCCTCTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: GTGTCRDLWPTGGTPHLPRARWS*PGVLSQ Trigger: CTGGGAGAGGACCCCAGGGCACGACCACCTGGCCCT...AGGAAGGTGAGGGGTGCCGCCTGTGGGCCACAAATCTCTACAAGTGCCTGTTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR GCA 90 bp | GCAGGGGGTGGGCGTGAAGGGACTGGACCAGTACTGGGTGGTGTAGGGAACAGGAGTTGGGCTGTGGCGTaGTGGAGGTCAGAGCTCACC | + |
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Preference number: 4 (lower is better) Translates to: AGGGREGTGPVLGGVGNRSWAVA*WRSELT Trigger: GGTGAGCTCTGACCTCCAGCACGCCACAGCCCAACT...CCTGTTCCCTACACCACCCAGTACTGGTCCAGTCCCTTCACGCCCACCCCCTGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | CGAGCGTCTCTCCAGCCCAAGGGCTGCACTTCAGGACACTACAGGCCTCCCGGTATCGGGGATCCTCAGTaGGGGACAGCACCTCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: RASLQPKGCTSGHYRPPGIGDPQ*GTAPQR Trigger: CCTCTGAGGTGCTGTCCCCCACTGAGGATCCCCGAT...ACCGGGAGGCCTGTAGTGTCCTGAAGTGCAGCCCTTGGGCTGGAGAGACGCTCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | CACAGAGCCGAGCGTCTCTCCAGCCCAAGGGCTGCACTTCAGGACACTACAGGCGGTGGGTGGGAGTCATaGGCAGAGCTGGGGAGAGCT | + |
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Preference number: 4 (lower is better) Translates to: HRAERLSSPRAALQDTTGGGWES*AELGRA Trigger: AGCTCTCCCCAGCTCTGCCCATGACTCCCACCCACC...GCCTGTAGTGTCCTGAAGTGCAGCCCTTGGGCTGGAGAGACGCTCGGCTCTGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR TCA 90 bp | TCTGAGTGGTTGCCAGAAGCTGCCTCCCCTGGAACTGAAGCTGTGAGCTGTCACAGAGGAAGACGAGGCTaGGGAGGGGACCGGCGGGGT | + |
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Preference number: 4 (lower is better) Translates to: SEWLPEAASPGTEAVSCHRGRRG*GGDRRG Trigger: ACCCCGCCGGTCCCCTCCTCAGCCTCGTCTTCCTCT...GTGACAGCTCACAGCTTCAGTTCCAGGGGAGGCAGCTTCTGGCAACCACTCAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR GCA 90 bp | GCCAATTCTGAGTGGTTGCCAGAAGCTGCCTCCCCTGGAACTGAAGCTGTGAGCAAGACACCAGGGTCATaGGGGAGGCGGGCCAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: ANSEWLPEAASPGTEAVSKTPGS*GRRARG Trigger: CCCCCTGGCCCGCCTCCCGCATGACCCTGGTGTCTT...GCTCACAGCTTCAGTTCCAGGGGAGGCAGCTTCTGGCAACCACTCAGAATTGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR GCA 90 bp | CGAGCGTCTCTCCAGCCCAAGGGCTGCACTTCAGGACACTACAGGCCTCCCGGTCCTAGCGGGGGTGGCTaGAGCTTAAACTTGAACGGG | + |
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Preference number: 4 (lower is better) Translates to: RASLQPKGCTSGHYRPPGPSGGG*SLNLNG Trigger: CCCGTTCAAGTTTAAGCTGCAGCCACCCCCGCTAGG...ACCGGGAGGCCTGTAGTGTCCTGAAGTGCAGCCCTTGGGCTGGAGAGACGCTCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR TCA 90 bp | GGAACAGGCACTTGTAGAGATTTGTGGCCCACAGGCGGCACCCCTCACCTTCCTAGGACTCAGCGTGGGTaGGGGTGTGTAGGCCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: GTGTCRDLWPTGGTPHLPRTQRG*GCVGQV Trigger: CACCTGGCCTACACACCCTCACCCACGCTGAGTCCT...AGGAAGGTGAGGGGTGCCGCCTGTGGGCCACAAATCTCTACAAGTGCCTGTTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | CACAGAGCCGAGCGTCTCTCCAGCCCAAGGGCTGCACTTCAGGACACTACAGGCGGACTGAAGGAGAAGTaGGAACCTCCCCCTGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: HRAERLSSPRAALQDTTGGLKEK*EPPPEP Trigger: TGGCTCAGGGGGAGGTTCCCACTTCTCCTTCAGTCC...GCCTGTAGTGTCCTGAAGTGCAGCCCTTGGGCTGGAGAGACGCTCGGCTCTGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | CACGAGCCACCCCACATGAGGTACTCTGCAACAGACGGAGGTTCTCCGAAGAGCGGGAGAGTTGGGCTGTaGCGTGCTGGAGGTCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: HEPPHMRYSATDGGSPKSGRVGL*RAGGQS Trigger: GCTCTGACCTCCAGCACGCCACAGCCCAACTCTCCC...GCTCTTCGGAGAACCTCCGTCTGTTGCAGAGTACCTCATGTGGGGTGGCTCGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR TCA 90 bp | CGAGCGTCTCTCCAGCCCAAGGGCTGCACTTCAGGACACTACAGGCCTCCCGGTTCATGTCCTCAGGACTaGAGGAGAAGTGGGAACCTC | + |
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Preference number: 4 (lower is better) Translates to: RASLQPKGCTSGHYRPPGSCPQD*RRSGNL Trigger: GAGGTTCCCACTTCTCCTTCAGTCCTGAGGACATGA...ACCGGGAGGCCTGTAGTGTCCTGAAGTGCAGCCCTTGGGCTGGAGAGACGCTCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR TCA 90 bp | TCTGAGTGGTTGCCAGAAGCTGCCTCCCCTGGAACTGAAGCTGTGAGCTGTCACGGAAGGCGCGGGGACTaGGGTGGTAGTTGTAGACGC | + |
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Preference number: 4 (lower is better) Translates to: SEWLPEAASPGTEAVSCHGRRGD*GGSCRR Trigger: GCGTCTACAACTACCACCTCAGTCCCCGCGCCTTCC...GTGACAGCTCACAGCTTCAGTTCCAGGGGAGGCAGCTTCTGGCAACCACTCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | GGAACAGGCACTTGTAGAGATTTGTGGCCCACAGGCGGCACCCCTCACCTTCCTGGAGGGAAGCGGAAATaGCTGCCGCCTGATGGCACT | + |
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Preference number: 4 (lower is better) Translates to: GTGTCRDLWPTGGTPHLPGGKRK*LPPDGT Trigger: AGTGCCATCAGGCGGCAGCCATTTCCGCTTCCCTCC...AGGAAGGTGAGGGGTGCCGCCTGTGGGCCACAAATCTCTACAAGTGCCTGTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | GGAACAGGCACTTGTAGAGATTTGTGGCCCACAGGCGGCACCCCTCACCTTCCTTGTAGGCCAGGTGGGTaGGAGTCATGGGCAGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: GTGTCRDLWPTGGTPHLPCRPGG*ESWAEL Trigger: CAGCTCTGCCCATGACTCCCACCCACCTGGCCTACA...AGGAAGGTGAGGGGTGCCGCCTGTGGGCCACAAATCTCTACAAGTGCCTGTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR GCA 90 bp | GCCTTCTGGCCACAGATGGGAAGCAGGTGTCTAGACCTGTCCAGAATTAAGCCAGGGAGCTACTGCACCTaGCCCCTCAGCCAGTCCACC | + |
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Preference number: 4 (lower is better) Translates to: AFWPQMGSRCLDLSRIKPGSYCT*PLSQST Trigger: GGTGGACTGGCTGAGGGGGCAGGTGCAGTAGCTCCC...TGGCTTAATTCTGGACAGGTCTAGACACCTGCTTCCCATCTGTGGCCAGAAGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR TCA 90 bp | TCTGAGTGGTTGCCAGAAGCTGCCTCCCCTGGAACTGAAGCTGTGAGCTGTCACCACCTCAGAGGGTGTTaGGGGAGGGAAGCGGAAATG | + |
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Preference number: 4 (lower is better) Translates to: SEWLPEAASPGTEAVSCHHLRGC*GREAEM Trigger: CATTTCCGCTTCCCTCCCTCAACACCCTCTGAGGTG...GTGACAGCTCACAGCTTCAGTTCCAGGGGAGGCAGCTTCTGGCAACCACTCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR GCA 90 bp | GGAACAGGCACTTGTAGAGATTTGTGGCCCACAGGCGGCACCCCTCACCTTCCTAGCCACTGCCACCACTaGTCTTGTCAGTGCCTCCTA | + |
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Preference number: 4 (lower is better) Translates to: GTGTCRDLWPTGGTPHLPSHCHH*SCQCLL Trigger: TAGGAGGCACTGACAAGAGCAGTGGTGGCAGTGGCT...AGGAAGGTGAGGGGTGCCGCCTGTGGGCCACAAATCTCTACAAGTGCCTGTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR TCA 90 bp | TCTATGCCAATTCTGAGTGGTTGCCAGAAGCTGCCTCCCCTGGAACTGAAGCTGAGGCCCAGCCAAAGGTaGCACAGGGAAGGGACTCAG | + |
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Preference number: 4 (lower is better) Translates to: SMPILSGCQKLPPLELKLRPSQR*HREGTQ Trigger: CTGAGTCCCTTCCCTGTGTCACCTTTGGCTGGGCCT...CAGCTTCAGTTCCAGGGGAGGCAGCTTCTGGCAACCACTCAGAATTGGCATAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR TCA 90 bp | GGAACAGGCACTTGTAGAGATTTGTGGCCCACAGGCGGCACCCCTCACCTTCCTCTCCGACTCTCCTTCTaGGATGGGCTCCACCTTAAT | + |
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Preference number: 4 (lower is better) Translates to: GTGTCRDLWPTGGTPHLPLRLSF*DGLHLN Trigger: ATTAAGGTGGAGCCCATCTCAGAAGGAGAGTCGGAG...AGGAAGGTGAGGGGTGCCGCCTGTGGGCCACAAATCTCTACAAGTGCCTGTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR GCA 90 bp | GCCAATTCTGAGTGGTTGCCAGAAGCTGCCTCCCCTGGAACTGAAGCTGTGAGCCTTTGGGTGTGGGCCTaGAGGTACCGTTTCATGTCC | + |
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Preference number: 4 (lower is better) Translates to: ANSEWLPEAASPGTEAVSLWVWA*RYRFMS Trigger: GGACATGAAACGGTACCTGCAGGCCCACACCCAAAG...GCTCACAGCTTCAGTTCCAGGGGAGGCAGCTTCTGGCAACCACTCAGAATTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | GTCAAGGAAAGACAAGACTACGGAAAGCCAGAAACCTTAATCATCAGCTCTGAGCTGGGGTGGTGGCGGTaGGGGAGCTACTGCACCTGC | + |
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Preference number: 4 (lower is better) Translates to: VKERQDYGKPETLIISSELGWWR*GSYCTC Trigger: GCAGGTGCAGTAGCTCCCCCACCGCCACCACCCCAG...CTCAGAGCTGATGATTAAGGTTTCTGGCTTTCCGTAGTCTTGTCTTTCCTTGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | GTCAAGGAAAGACAAGACTACGGAAAGCCAGAAACCTTAATCATCAGCTCTGAGTGCCATGGGCGGCAGTaGGCACTTGTCAGGGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: VKERQDYGKPETLIISSECHGRQ*ALVRAL Trigger: CAGCGCCCTGACAAGTGCCCACTGCCGCCCATGGCA...CTCAGAGCTGATGATTAAGGTTTCTGGCTTTCCGTAGTCTTGTCTTTCCTTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR GCA 90 bp | AAGCGGAAATGGCTGCCGCCTGATGGCACTGGTGGGGCGCTTTGGGGAACTGCATGGTCTTGTGTAGAATaGGCTTGTTGTAATAATAGC | + |
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Preference number: 4 (lower is better) Translates to: KRKWLPPDGTGGALWGTAWSCVE*ACCNNS Trigger: GCTATTATTACAACAAGCGCATTCTACACAAGACCA...TGCAGTTCCCCAAAGCGCCCCACCAGTGCCATCAGGCGGCAGCCATTTCCGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116343.3 |
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| CDS-3UTR CCA 90 bp | GTCAAGGAAAGACAAGACTACGGAAAGCCAGAAACCTTAATCATCAGCTCTGAGAGAGCTCACCCGTCGTaGGGTAAGGGGTCCCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: VKERQDYGKPETLIISSERAHPS*GKGSPR Trigger: TCTGGGGGACCCCTTACCCCACGACGGGTGAGCTCT...CTCAGAGCTGATGATTAAGGTTTCTGGCTTTCCGTAGTCTTGTCTTTCCTTGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR TCA 90 bp | GTCAAGGAAAGACAAGACTACGGAAAGCCAGAAACCTTAATCATCAGCTCTGAGCATCACTACAGTCACTaGCTGAGCCTCGGCCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: VKERQDYGKPETLIISSEHHYSH*LSLGPG Trigger: GCCTGGGCCGAGGCTCAGTCAGTGACTGTAGTGATG...CTCAGAGCTGATGATTAAGGTTTCTGGCTTTCCGTAGTCTTGTCTTTCCTTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | GTCAAGGAAAGACAAGACTACGGAAAGCCAGAAACCTTAATCATCAGCTCTGAGCACCTTAATCTGGGGTaGTGGCGGTGGGGGAGCTAC | + |
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Preference number: 4 (lower is better) Translates to: VKERQDYGKPETLIISSEHLNLG*WRWGSY Trigger: GTAGCTCCCCCACCGCCACCACCCCAGATTAAGGTG...CTCAGAGCTGATGATTAAGGTTTCTGGCTTTCCGTAGTCTTGTCTTTCCTTGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | AAGGAACCAGTCAAGGAAAGACAAGACTACGGAAAGCCAGAAACCTTAATCATCTTAAGGGGCATGCACTaGGCCACCCCCGGTGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: KEPVKERQDYGKPETLIILRGMH*ATPGAS Trigger: AGAGGCACCGGGGGTGGCCCAGTGCATGCCCCTTAA...GATGATTAAGGTTTCTGGCTTTCCGTAGTCTTGTCTTTCCTTGACTGGTTCCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| 3UTR CAA 72 bp | CGCACACCTCCCTTTCACATGGTCCTGGCCTTAACTTaGAACTTCCTACCTCAAGTGCTGGTGGGATTACAG | + |
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Preference number: 4 (lower is better) Translates to: RTPPFHMVLALT*NFLPQVLVGLQ Trigger: CTGTAATCCCACCAGCACTTGAGGTAGGAAGTTCAAAGTTAAGGCCAGGACCATGTGAAAGGGAGGTGTGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR TCA 90 bp | GTCAAGGAAAGACAAGACTACGGAAAGCCAGAAACCTTAATCATCAGCTCTGAGAGGCTCCTCCAGCTCTaGGGTGCCATCACTACAGTC | + |
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Preference number: 4 (lower is better) Translates to: VKERQDYGKPETLIISSERLLQL*GAITTV Trigger: GACTGTAGTGATGGCACCTCAGAGCTGGAGGAGCCT...CTCAGAGCTGATGATTAAGGTTTCTGGCTTTCCGTAGTCTTGTCTTTCCTTGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CCA 90 bp | AAGGAACCAGTCAAGGAAAGACAAGACTACGGAAAGCCAGAAACCTTAATCATCCTTAATCTGGGGTGGTaGCGGTGGGGGAGCTACTGC | + |
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Preference number: 4 (lower is better) Translates to: KEPVKERQDYGKPETLIILNLGW*RWGSYC Trigger: GCAGTAGCTCCCCCACCGCCACCACCCCAGATTAAG...GATGATTAAGGTTTCTGGCTTTCCGTAGTCTTGTCTTTCCTTGACTGGTTCCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR GCA 90 bp | TCTGAGTGGTTGCCAGAAGCTGCCTCCCCTGGAACTGAAGCTGTGAGCTGTCACTGGTCTTGTGTAGAATaGGCTTGTTGTAATAATAGC | + |
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Preference number: 4 (lower is better) Translates to: SEWLPEAASPGTEAVSCHWSCVE*ACCNNS Trigger: GCTATTATTACAACAAGCGCATTCTACACAAGACCA...GTGACAGCTCACAGCTTCAGTTCCAGGGGAGGCAGCTTCTGGCAACCACTCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR TCA 90 bp | GTCAAGGAAAGACAAGACTACGGAAAGCCAGAAACCTTAATCATCAGCTCTGAGCCTCATCTTCGTCACTaGTGTCAGTCACCTCCACCT | + |
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Preference number: 4 (lower is better) Translates to: VKERQDYGKPETLIISSEPHLRH*CQSPPP Trigger: AGGTGGAGGTGACTGACATCAGTGACGAAGATGAGG...CTCAGAGCTGATGATTAAGGTTTCTGGCTTTCCGTAGTCTTGTCTTTCCTTGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS GCA 90 bp | CCTCAGCCAGTCCACCCGAGCCACTGCCACCACTGCTCTTGTCAGTaGCTCCTAGAGCCTTCTCTCCAGCTGCCCGCTGCCGGCGTCCTA | + |
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Preference number: 5 (lower is better) Translates to: PQPVHPSHCHHCSCQ*LLEPSLQLPAAGVL Trigger: TAGGACGCCGGCAGCGGGCAGCTGGAGAGAAGGCTCTAGGAGGCACTGACAAGAGCAGTGGTGGCAGTGGCTCGGGTGGACTGGCTGAGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CAA 90 bp | GCAGGGGGTGGGCGTGAAGGGACTGGACCAGTACTGGGTGGTGTAGGGAACAGGGTGCTCCAGGGAGAGTaGGGCTGTGGCGTGCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: AGGGREGTGPVLGGVGNRVLQGE*GCGVLE Trigger: CTCCAGCACGCCACAGCCCAACTCTCCCTGGAGCAC...CCTGTTCCCTACACCACCCAGTACTGGTCCAGTCCCTTCACGCCCACCCCCTGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS GCA 90 bp | CTGCTCTTGTCAGTGCCTCCTAGAGCCTTCTCTCCAGCTGCCCGCTaGCGGCGTCCTAGCGGGGGTGGCTGCAGCTTAAACTTGAACGGG | + |
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Preference number: 5 (lower is better) Translates to: LLLSVPPRAFSPAAR*RRPSGGGCSLNLNG Trigger: CCCGTTCAAGTTTAAGCTGCAGCCACCCCCGCTAGGACGCCGGCAGCGGGCAGCTGGAGAGAAGGCTCTAGGAGGCACTGACAAGAGCAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CAA 90 bp | CACAGAGCCGAGCGTCTCTCCAGCCCAAGGGCTGCACTTCAGGACACTACAGGCCTGCCACCACTGCTCTaGTCAGTGCCTCCTAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: HRAERLSSPRAALQDTTGLPPLL*SVPPRA Trigger: GGCTCTAGGAGGCACTGACAAGAGCAGTGGTGGCAG...GCCTGTAGTGTCCTGAAGTGCAGCCCTTGGGCTGGAGAGACGCTCGGCTCTGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CAA 90 bp | AAGCGGAAATGGCTGCCGCCTGATGGCACTGGTGGGGCGCTTTGGGGAACTGCAGTGAACCGTTTCCCCTaGGTCTTGTGTAGAATGCGC | + |
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Preference number: 5 (lower is better) Translates to: KRKWLPPDGTGGALWGTAVNRFP*VLCRMR Trigger: GCGCATTCTACACAAGACCAAGGGGAAACGGTTCAC...TGCAGTTCCCCAAAGCGCCCCACCAGTGCCATCAGGCGGCAGCCATTTCCGCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000116343.3 |
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| CDS-3UTR CAA 90 bp | AAGCGGAAATGGCTGCCGCCTGATGGCACTGGTGGGGCGCTTTGGGGAACTGCACGTTTCCCCTTGGTCTaGTGTAGAATGCGCTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: KRKWLPPDGTGGALWGTARFPLV*CRMRLL Trigger: CAACAAGCGCATTCTACACAAGACCAAGGGGAAACG...TGCAGTTCCCCAAAGCGCCCCACCAGTGCCATCAGGCGGCAGCCATTTCCGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000116343.3 |
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| CDS-3UTR CAA 90 bp | CACGAGCCACCCCACATGAGGTACTCTGCAACAGACGGAGGTTCTCCGAAGAGCTCCCCACGCACCTTCTaGTCCTCACCCTCATCTTCA | + |
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Preference number: 5 (lower is better) Translates to: HEPPHMRYSATDGGSPKSSPRTF*SSPSSS Trigger: TGAAGATGAGGGTGAGGACAAGAAGGTGCGTGGGGA...GCTCTTCGGAGAACCTCCGTCTGTTGCAGAGTACCTCATGTGGGGTGGCTCGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CAA 90 bp | TCTATGCCAATTCTGAGTGGTTGCCAGAAGCTGCCTCCCCTGGAACTGAAGCTGGTGAACCGTTTCCCCTaGGTCTTGTGTAGAATGCGC | + |
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Preference number: 5 (lower is better) Translates to: SMPILSGCQKLPPLELKLVNRFP*VLCRMR Trigger: GCGCATTCTACACAAGACCAAGGGGAAACGGTTCAC...CAGCTTCAGTTCCAGGGGAGGCAGCTTCTGGCAACCACTCAGAATTGGCATAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CAA 90 bp | TCTATGCCAATTCTGAGTGGTTGCCAGAAGCTGCCTCCCCTGGAACTGAAGCTGCGTTTCCCCTTGGTCTaGTGTAGAATGCGCTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: SMPILSGCQKLPPLELKLRFPLV*CRMRLL Trigger: CAACAAGCGCATTCTACACAAGACCAAGGGGAAACG...CAGCTTCAGTTCCAGGGGAGGCAGCTTCTGGCAACCACTCAGAATTGGCATAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS-3UTR CAA 90 bp | AAGGAACCAGTCAAGGAAAGACAAGACTACGGAAAGCCAGAAACCTTAATCATCGTAGTTGTAGACGCTTaGGGTGTGGGCCTGCAGGTA | + |
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Preference number: 5 (lower is better) Translates to: KEPVKERQDYGKPETLIIVVVDA*GVGLQV Trigger: TACCTGCAGGCCCACACCCAAAGCGTCTACAACTAC...GATGATTAAGGTTTCTGGCTTTCCGTAGTCTTGTCTTTCCTTGACTGGTTCCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS CCA 72 bp | AGGCTGAGGAGGGGACCGGCGGGGTCTCCGGTGCCATaGGCGGCAGTGGGCACTTGTCAGGGCGCTGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: RLRRGPAGSPVP*AAVGTCQGAEA Trigger: AGCCTCAGCGCCCTGACAAGTGCCCACTGCCGCCCATGGCACCGGAGACCCCGCCGGTCCCCTCCTCAGCCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS CCA 72 bp | AGGCACCCAGCTCCGGAGGGCCAGGTGGTCGTGCCCTaGGGTCCTCTCCCAGAGGCTCCTCCAGCTCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: RHPAPEGQVVVP*GPLPEAPPALR Trigger: CCTCAGAGCTGGAGGAGCCTCTGGGAGAGGACCCCAGGGCACGACCACCTGGCCCTCCGGAGCTGGGTGCCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS CAA 90 bp | CCTGCCCCCTCAGCCAGTCCACCCGAGCCACTGCCACCACTGCTCTaGTCAGTGCCTCCTAGAGCCTTCTCTCCAGCTGCCCGCTGCCGG | + |
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Preference number: 6 (lower is better) Translates to: PAPSASPPEPLPPLL*SVPPRAFSPAARCR Trigger: CCGGCAGCGGGCAGCTGGAGAGAAGGCTCTAGGAGGCACTGACAAGAGCAGTGGTGGCAGTGGCTCGGGTGGACTGGCTGAGGGGGCAGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS CCA 72 bp | CAGCGCCGCTTAAAGCGCAGTTTAAGGGGCATGCACTaGGCCACCCCCGGTGCCTCTCCGGGCTCTGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: QRRLKRSLRGMH*ATPGASPGSGL Trigger: CAAGCCAGAGCCCGGAGAGGCACCGGGGGTGGCCCAGTGCATGCCCCTTAAACTGCGCTTTAAGCGGCGCTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS GCA 72 bp | TCAGTGCCTCCTAGAGCCTTCTCTCCAGCTGCCCGCTaGCGGCGTCCTAGCGGGGGTGGCTGCAGCTTAAAC | + |
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Preference number: 6 (lower is better) Translates to: SVPPRAFSPAAR*RRPSGGGCSLN Trigger: GTTTAAGCTGCAGCCACCCCCGCTAGGACGCCGGCAGCGGGCAGCTGGAGAGAAGGCTCTAGGAGGCACTGA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS GCA 72 bp | GTCCACCCGAGCCACTGCCACCACTGCTCTTGTCAGTaGCTCCTAGAGCCTTCTCTCCAGCTGCCCGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: VHPSHCHHCSCQ*LLEPSLQLPAA Trigger: GGCAGCGGGCAGCTGGAGAGAAGGCTCTAGGAGGCACTGACAAGAGCAGTGGTGGCAGTGGCTCGGGTGGAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS CCA 72 bp | TCTCGGTGCTCCAGGGAGAGTTGGGCTGTGGCGTGCTaGAGGTCAGAGCTCACCCGTCGTGGGGTAAGGGGT | + |
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Preference number: 6 (lower is better) Translates to: SRCSRESWAVAC*RSELTRRGVRG Trigger: ACCCCTTACCCCACGACGGGTGAGCTCTGACCTCCAGCACGCCACAGCCCAACTCTCCCTGGAGCACCGAGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS TCA 72 bp | GCTCCTCCAGCTCTGAGGTGCCATCACTACAGTCACTaGCTGAGCCTCGGCCCAGGCGTCGGGCAACCACAG | + |
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Preference number: 6 (lower is better) Translates to: APPALRCHHYSH*LSLGPGVGQPQ Trigger: CTGTGGTTGCCCGACGCCTGGGCCGAGGCTCAGTCAGTGACTGTAGTGATGGCACCTCAGAGCTGGAGGAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS GCA 72 bp | CCAGCTGCCCGCTGCCGGCGTCCTAGCGGGGGTGGCTaGAGCTTAAACTTGAACGGGGATGAAGAGGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: PAARCRRPSGGG*SLNLNGDEEEE Trigger: TTCCTCCTCTTCATCCCCGTTCAAGTTTAAGCTGCAGCCACCCCCGCTAGGACGCCGGCAGCGGGCAGCTGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS GCA 72 bp | GAATCTCGGTGCTCCAGGGAGAGTTGGGCTGTGGCGTaGTGGAGGTCAGAGCTCACCCGTCGTGGGGTAAGG | + |
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Preference number: 6 (lower is better) Translates to: ESRCSRESWAVA*WRSELTRRGVR Trigger: CCTTACCCCACGACGGGTGAGCTCTGACCTCCAGCACGCCACAGCCCAACTCTCCCTGGAGCACCGAGATTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS CAA 72 bp | TCAGCCAGTCCACCCGAGCCACTGCCACCACTGCTCTaGTCAGTGCCTCCTAGAGCCTTCTCTCCAGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: SASPPEPLPPLL*SVPPRAFSPAA Trigger: GGCAGCTGGAGAGAAGGCTCTAGGAGGCACTGACAAGAGCAGTGGTGGCAGTGGCTCGGGTGGACTGGCTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS CAA 72 bp | GAAGGCGCGGGGACTGAGGTGGTAGTTGTAGACGCTTaGGGTGTGGGCCTGCAGGTACCGTTTCATGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: EGAGTEVVVVDA*GVGLQVPFHVL Trigger: GAGGACATGAAACGGTACCTGCAGGCCCACACCCAAAGCGTCTACAACTACCACCTCAGTCCCCGCGCCTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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| CDS CAA 90 bp | GTAGTGCAGGAAGGCGCGGGGACTGAGGTGGTAGTTGTAGACGCTTaGGGTGTGGGCCTGCAGGTACCGTTTCATGTCCTCAGGACTGAA | + |
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Preference number: 6 (lower is better) Translates to: VVQEGAGTEVVVVDA*GVGLQVPFHVLRTE Trigger: TTCAGTCCTGAGGACATGAAACGGTACCTGCAGGCCCACACCCAAAGCGTCTACAACTACCACCTCAGTCCCCGCGCCTTCCTGCACTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045847.15 |
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